BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA031523.1|CA031523 HX10D23r HX Hordeum vulgare subsp. v... 331 2e-089
gb|BI776406.2|BI776406 EBpi05_SQ001_E05_R pistil, 8 DPA, no... 287 3e-076
gb|BI780944.2|BI780944 EBma05_SQ001_J17_R maternal, 12 DPA,... 278 3e-073
gb|BQ765772.1|BQ765772 EBro03_SQ008_J04_R root, 3 week, wat... 254 4e-066
gb|CB876258.1|CB876258 HX10M02w HX Hordeum vulgare subsp. v... 238 3e-061
gb|BM100842.2|BM100842 EBpi01_SQ002_C12_R pistil, 1 DPA, no... 226 1e-057
gb|BU970562.1|BU970562 HB15A07r BC Hordeum vulgare subsp. v... 214 4e-054
gb|BQ754697.1|BQ754697 EBed01_SQ003_I23_R endosperm, 6 DPA,... 133 1e-029
gb|BM374291.1|BM374291 EBpi03_SQ003_D12_R pistil, 4 DPA, no... 109 2e-022
gb|BM374292.1|BM374292 EBpi03_SQ003_D13_R pistil, 4 DPA, no... 109 2e-022
gb|BJ469039.1|BJ469039 BJ469039 K. Sato unpublished cDNA li... 40 0.12
gb|BQ462912.1|BQ462912 HI02G10r HI Hordeum vulgare subsp. v... 40 0.12
gb|CA030163.1|CA030163 HX06E08r HX Hordeum vulgare subsp. v... 40 0.12
gb|AV919983.1|AV919983 AV919983 K. Sato unpublished cDNA li... 38 0.47
gb|AV921002.1|AV921002 AV921002 K. Sato unpublished cDNA li... 38 0.47
gb|AV921834.1|AV921834 AV921834 K. Sato unpublished cDNA li... 38 0.47
gb|AV932050.1|AV932050 AV932050 K. Sato unpublished cDNA li... 38 0.47
gb|AV932620.1|AV932620 AV932620 K. Sato unpublished cDNA li... 38 0.47
gb|AV932666.1|AV932666 AV932666 K. Sato unpublished cDNA li... 38 0.47
gb|AV933223.1|AV933223 AV933223 K. Sato unpublished cDNA li... 38 0.47
gb|AV934728.1|AV934728 AV934728 K. Sato unpublished cDNA li... 38 0.47
gb|AV934893.1|AV934893 AV934893 K. Sato unpublished cDNA li... 38 0.47
gb|AV935008.1|AV935008 AV935008 K. Sato unpublished cDNA li... 38 0.47
gb|AV935095.1|AV935095 AV935095 K. Sato unpublished cDNA li... 38 0.47
gb|AV936769.1|AV936769 AV936769 K. Sato unpublished cDNA li... 38 0.47
gb|AJ462225.1|AJ462225 AJ462225 S00002 Hordeum vulgare subs... 38 0.47
gb|AJ462226.1|AJ462226 AJ462226 S00002 Hordeum vulgare subs... 38 0.47
gb|BJ452941.1|BJ452941 BJ452941 K. Sato unpublished cDNA li... 38 0.47
gb|BJ460490.1|BJ460490 BJ460490 K. Sato unpublished cDNA li... 38 0.47
gb|BJ465957.1|BJ465957 BJ465957 K. Sato unpublished cDNA li... 38 0.47
gb|BJ466660.1|BJ466660 BJ466660 K. Sato unpublished cDNA li... 38 0.47
gb|BJ469480.1|BJ469480 BJ469480 K. Sato unpublished cDNA li... 38 0.47
gb|BJ471508.1|BJ471508 BJ471508 K. Sato unpublished cDNA li... 38 0.47
gb|BJ473912.1|BJ473912 BJ473912 K. Sato unpublished cDNA li... 38 0.47
gb|BJ474070.1|BJ474070 BJ474070 K. Sato unpublished cDNA li... 38 0.47
gb|BJ474090.1|BJ474090 BJ474090 K. Sato unpublished cDNA li... 38 0.47
gb|BJ474672.1|BJ474672 BJ474672 K. Sato unpublished cDNA li... 38 0.47
gb|BJ474789.1|BJ474789 BJ474789 K. Sato unpublished cDNA li... 38 0.47
gb|BJ475180.1|BJ475180 BJ475180 K. Sato unpublished cDNA li... 38 0.47
gb|BJ475897.1|BJ475897 BJ475897 K. Sato unpublished cDNA li... 38 0.47
gb|BJ476777.1|BJ476777 BJ476777 K. Sato unpublished cDNA li... 38 0.47
gb|BJ477287.1|BJ477287 BJ477287 K. Sato unpublished cDNA li... 38 0.47
gb|BQ656965.1|BQ656965 HA01D22u HA Hordeum vulgare subsp. v... 38 0.47
gb|BQ660803.1|BQ660803 HI05I16u HI Hordeum vulgare subsp. v... 38 0.47
gb|BM376856.2|BM376856 EBem05_SQ003_G21_R embryo, 14 DPA, n... 38 0.47
gb|BM372340.2|BM372340 EBro03_SQ004_L02_R root, 3 week, wat... 38 0.47
gb|BQ766519.1|BQ766519 EBro08_SQ006_G07_R root, 3 week, dro... 38 0.47
gb|BU986671.1|BU986671 HF12J07r HF Hordeum vulgare subsp. v... 38 0.47
gb|CA006529.1|CA006529 HU13E21u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA015953.1|CA015953 HV11K09u HV Hordeum vulgare subsp. v... 38 0.47
gb|CD663912.1|CD663912 UCRHV18_07ac09_b1 Drought-stressed D... 38 0.47
>gb|CA031523.1|CA031523 HX10D23r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D23
5-PRIME, mRNA sequence
Length = 622
Score = 331 bits (167), Expect = 2e-089
Identities = 413/495 (83%)
Strand = Plus / Minus
Query: 287 gcaaggagctggaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgc 346
|||||||||||||| ||||| || |||||||||||||||||||| | |||||||||||||
Sbjct: 604 gcaaggagctggaactggcgttctgcctccatccagcggaaccccatgaccttgaagcgc 545
Query: 347 acggcggtgtccttctccagcttcgagtggtcgttcatgaacatcgcattctccccacct 406
|| ||||||||| |||||||||| |||||||| ||||||||||| | ||||| || ||
Sbjct: 544 acagcggtgtccctctccagctttgagtggtccttcatgaacatggggttctcgccgccc 485
Query: 407 atgtacttgtaattactcatcgacttctcagccaggaagatgctctccacgggtccggat 466
||||||||||| | |||||||||||||| | ||||||||||||||| | || ||||||
Sbjct: 484 atgtacttgtagtcgctcatcgacttctccgacaggaagatgctctcgattggcccggat 425
Query: 467 ttgaggaacacgccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttc 526
|||||||| || || |||||||||||| | |||||| || |||| || ||| ||||||
Sbjct: 424 ttgaggaagaccccgtgcttgaggatcttctccacggagccgaccaagatctcccccttc 365
Query: 527 ataggcttctgggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctca 586
|||||| |||| || ||||| || |||| || ||||| ||||| ||||| || || |||
Sbjct: 364 ataggcctctgagtgatgcaggtgaatgtgaccgggaaaagaacgtctccggtcagttca 305
Query: 587 cgcactttcccttcagatattgccttcagctgattaacagcaatgtagtagccatgctct 646
|| || ||||||||||| || | |||||||| || |||||||||||||||||||||||
Sbjct: 304 cgaaccttcccttcagagatcgtcttcagctcgttgacagcaatgtagtagccatgctca 245
Query: 647 ttcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagccttgcggagc 706
|| || ||| |||||| |||| ||||||||||||||||| ||||| | ||||||||||
Sbjct: 244 ttggaggccttcctgttggtgatgtcctccagaagacgcacgatgatcgacttgcggagc 185
Query: 707 aggaggcccttgcggtccagctggctaggtgagatcaacacattccatgacatctctgcc 766
|| ||||||||| || ||||||| |||||||||| ||| ||||| |||||||| ||
Sbjct: 184 agcaggcccttggggctcagctggtccggtgagatcagcacgttccaagacatctcctcc 125
Query: 767 tcaagaaaaaccatg 781
| ||| |||||||||
Sbjct: 124 tgaaggaaaaccatg 110
>gb|BI776406.2|BI776406 EBpi05_SQ001_E05_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_E05 5', mRNA sequence
Length = 488
Score = 287 bits (145), Expect = 3e-076
Identities = 337/401 (84%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 415 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 356
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || |||||||||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct: 355 cgttctgcctccatccagcggaaccccatgaccttgaagcgcacagcggtgtccctctcc 296
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||| |||||||| ||||||||||| | ||||| || || ||||||||||| | |||
Sbjct: 295 agctttgagtggtccttcatgaacatggggttctcgccgcccatgtacttgtagtcgctc 236
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
||||||||||| | ||||||||||||||| | || |||||||||||||| || || |||
Sbjct: 235 atcgacttctccgacaggaagatgctctcgattggcccggatttgaggaagaccccgtgc 176
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| | |||||| || |||| || ||| |||||||||||| |||| || |||
Sbjct: 175 ttgaggatcttctccacggagccgaccaagatctcccccttcataggcctctgagtgatg 116
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || |||| || ||||| ||||| ||||| || || ||||| || |||||||||||
Sbjct: 115 caggtgaatgtgaccgggaaaagaacgtctccggtcagttcacgaaccttcccttcagag 56
Query: 605 attgccttcagctgattaacagcaatgtagtagccatgctc 645
|| | |||||||| || |||||||||||||||||||||||
Sbjct: 55 atcgtcttcagctcgttgacagcaatgtagtagccatgctc 15
>gb|BI780944.2|BI780944 EBma05_SQ001_J17_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_J17 5', mRNA sequence
Length = 522
Score = 278 bits (140), Expect = 3e-073
Identities = 371/448 (82%)
Strand = Plus / Minus
Query: 334 gaccttgaagcgcacggcggtgtccttctccagcttcgagtggtcgttcatgaacatcgc 393
||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct: 517 gaccttgaagcgcacagcggtgtccctctccagctttgagtggtccttcatgaacatggg 458
Query: 394 attctccccacctatgtacttgtaattactcatcgacttctcagccaggaagatgctctc 453
||||| || || ||||||||||| | |||||||||||||| | |||||||||||||||
Sbjct: 457 gttctcgccgcccatgtacttgtagtcgctcatcgacttctccgacaggaagatgctctc 398
Query: 454 cacgggtccggatttgaggaacacgccatgcttgaggatcctgtccacgtgcccaaccat 513
| || |||||||||||||| || || |||||||||||| | |||||| || ||||
Sbjct: 397 gattggcccggatttgaggaagaccccgtgcttgaggatcttctccacggagccgaccaa 338
Query: 514 gacctctcccttcataggcttctgggtaatgcaagtaaatgaaactgggaacagaacatc 573
|| ||| |||||||||||| |||| || ||||| || |||| || ||||| ||||| ||
Sbjct: 337 gatctcccccttcataggcctctgagtgatgcaggtgaatgtgaccgggaaaagaacgtc 278
Query: 574 tccagttagctcacgcactttcccttcagatattgccttcagctgattaacagcaatgta 633
||| || || ||||| || ||||||||||| || | |||||||| || |||||||||||
Sbjct: 277 tccggtcagttcacgaaccttcccttcagagatcgtcttcagctcgttgacagcaatgta 218
Query: 634 gtagccatgctctttcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgat 693
|||||||||||| || || ||| |||||| |||| ||||||||||||||||| |||||
Sbjct: 217 gtagccatgctcattggaggccttcctgttggtgatgtcctccagaagacgcacgatgat 158
Query: 694 agccttgcggagcaggaggcccttgcggtccagctggctaggtgagatcaacacattcca 753
| |||||||||||| ||||||||| || ||||||| |||||||||| ||| |||||
Sbjct: 157 cgacttgcggagcagcaggcccttggggctcagctggtccggtgagatcagcacgttcca 98
Query: 754 tgacatctctgcctcaagaaaaaccatg 781
|||||||| ||| ||| |||||||||
Sbjct: 97 agacatctcctcctgaaggaaaaccatg 70
>gb|BQ765772.1|BQ765772 EBro03_SQ008_J04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_J04 5', mRNA sequence
Length = 591
Score = 254 bits (128), Expect = 4e-066
Identities = 311/372 (83%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 372 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 313
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || |||||||||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct: 312 cgttctgcctccatccagcggaaccccatgaccttgaagcgcacagcggtgtccctctcc 253
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||| |||||||| ||||||||||| | ||||| || || ||||||||||| | |||
Sbjct: 252 agctttgagtggtccttcatgaacatggggttctcgccgcccatgtacttgtagtcgctc 193
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
||||||||||| | ||||||||||||||| | || |||||||||||||| || || |||
Sbjct: 192 atcgacttctccgacaggaagatgctctcgattggcccggatttgaggaagaccccgtgc 133
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| | |||||| || |||| || ||| |||||||||||| |||| || |||
Sbjct: 132 ttgaggatcttctccacggagccgaccaagatctcccccttcataggcctctgagtgatg 73
Query: 545 caagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcagat 604
|| || |||| || ||||| ||||| ||||| || || ||||| || |||||||||||
Sbjct: 72 caggtgaatgtgaccgggaaaagaacgtctccggtcagttcacgaaccttcccttcagag 13
Query: 605 attgccttcagc 616
|| | |||||||
Sbjct: 12 atcgtcttcagc 1
>gb|CB876258.1|CB876258 HX10M02w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M02
3-PRIME, mRNA sequence
Length = 519
Score = 238 bits (120), Expect = 3e-061
Identities = 279/332 (84%)
Strand = Plus / Plus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 176 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 235
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || |||||||||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct: 236 cgttctgcctccatccagcggaaccccatgaccttgaagcgcacagcggtgtccctctcc 295
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||| |||||||| ||||||||||| | ||||| || || ||||||||||| | |||
Sbjct: 296 agctttgagtggtccttcatgaacatggggttctcgccgcccatgtacttgtagtcgctc 355
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
||||||||||| | ||||||||||||||| | || |||||||||||||| || || |||
Sbjct: 356 atcgacttctccgacaggaagatgctctcgattggcccggatttgaggaagaccccgtgc 415
Query: 485 ttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaatg 544
||||||||| | |||||| || |||| || ||| |||||||||||| |||| || |||
Sbjct: 416 ttgaggatcttctccacggagccgaccaagatctcccccttcataggcctctgagtgatg 475
Query: 545 caagtaaatgaaactgggaacagaacatctcc 576
|| || |||| || ||||| ||||| |||||
Sbjct: 476 caggtgaatgtgaccgggaaaagaacgtctcc 507
>gb|BM100842.2|BM100842 EBpi01_SQ002_C12_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_C12 5', mRNA sequence
Length = 467
Score = 226 bits (114), Expect = 1e-057
Identities = 222/258 (86%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 277 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 218
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgcacggcggtgtccttctcc 364
|| || |||||||||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct: 217 cgttctgcctccatccagcggaaccccatgaccttgaagcgcacagcggtgtccctctcc 158
Query: 365 agcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattactc 424
||||| |||||||| ||||||||||| | ||||| || || ||||||||||| | |||
Sbjct: 157 agctttgagtggtccttcatgaacatggggttctcgccgcccatgtacttgtagtcgctc 98
Query: 425 atcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatgc 484
||||||||||| | ||||||||||||||| | || |||||||||||||| || || |||
Sbjct: 97 atcgacttctccgacaggaagatgctctcgattggcccggatttgaggaagaccccgtgc 38
Query: 485 ttgaggatcctgtccacg 502
||||||||| | ||||||
Sbjct: 37 ttgaggatcttctccacg 20
>gb|BU970562.1|BU970562 HB15A07r BC Hordeum vulgare subsp. vulgare cDNA clone HB15A07
5-PRIME, mRNA sequence
Length = 486
Score = 214 bits (108), Expect = 4e-054
Identities = 327/400 (81%)
Strand = Plus / Minus
Query: 382 catgaacatcgcattctccccacctatgtacttgtaattactcatcgacttctcagccag 441
||||||||| | ||||| || || ||||||||||| | |||||||||||||| | |||
Sbjct: 486 catgaacatggggttctcgccgcccatgtacttgtagtcgctcatcgacttctccgacag 427
Query: 442 gaagatgctctccacgggtccggatttgaggaacacgccatgcttgaggatcctgtccac 501
|||||||||||| | || |||||||||||||| || || |||||||||||| | |||||
Sbjct: 426 gaagatgctctcgattggcccggatttgaggaagaccccgtgcttgaggatcttctccac 367
Query: 502 gtgcccaaccatgacctctcccttcataggcttctgggtaatgcaagtaaatgaaactgg 561
| || |||| || ||| |||||||||||| |||| || ||||| || |||| || ||
Sbjct: 366 ggagccgaccaagatctcccccttcataggcctctgagtgatgcaggtgaatgtgaccgg 307
Query: 562 gaacagaacatctccagttagctcacgcactttcccttcagatattgccttcagctgatt 621
||| ||||| ||||| || || ||||| || ||||||||||| || | |||||||| ||
Sbjct: 306 gaaaagaacgtctccggtcagttcacgaaccttcccttcagagatcgtcttcagctcgtt 247
Query: 622 aacagcaatgtagtagccatgctctttcgaagccctcctgtgtgtgacatcctccagaag 681
||||||||||||||||||||||| || || ||| |||||| |||| |||||||||||
Sbjct: 246 gacagcaatgtagtagccatgctcattggaggccttcctgttggtgatgtcctccagaag 187
Query: 682 acgcacaatgatagccttgcggagcaggaggcccttgcggtccagctggctaggtgagat 741
|||||| ||||| | |||||||||||| ||||||||| || ||||||| ||||||||
Sbjct: 186 acgcacgatgatcgacttgcggagcagcaggcccttggggctcagctggtccggtgagat 127
Query: 742 caacacattccatgacatctctgcctcaagaaaaaccatg 781
|| ||| ||||| |||||||| ||| ||| |||||||||
Sbjct: 126 cagcacgttccaagacatctcctcctgaaggaaaaccatg 87
>gb|BQ754697.1|BQ754697 EBed01_SQ003_I23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_I23 5', mRNA sequence
Length = 349
Score = 133 bits (67), Expect = 1e-029
Identities = 169/203 (83%)
Strand = Plus / Minus
Query: 560 gggaacagaacatctccagttagctcacgcactttcccttcagatattgccttcagctga 619
||||| ||||| ||||| || || ||||| || ||||||||||| || | ||||||||
Sbjct: 324 gggaaaagaacgtctccggtcagttcacgaaccttcccttcagagatcgtcttcagctcg 265
Query: 620 ttaacagcaatgtagtagccatgctctttcgaagccctcctgtgtgtgacatcctccaga 679
|| ||||||||||||||||||||||| || || ||| |||||| |||| |||||||||
Sbjct: 264 ttgacagcaatgtagtagccatgctcattggaggccttcctgttggtgatgtcctccaga 205
Query: 680 agacgcacaatgatagccttgcggagcaggaggcccttgcggtccagctggctaggtgag 739
|||||||| ||||| | |||||||||||| ||||||||| || ||||||| ||||||
Sbjct: 204 agacgcacgatgatcgacttgcggagcagcaggcccttggggctcagctggtccggtgag 145
Query: 740 atcaacacattccatgacatctc 762
|||| ||| ||||| ||||||||
Sbjct: 144 atcagcacgttccaagacatctc 122
>gb|BM374291.1|BM374291 EBpi03_SQ003_D12_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_D12 5', mRNA sequence
Length = 294
Score = 109 bits (55), Expect = 2e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 103 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 44
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgca 347
|| || |||||||||||||||||||| | ||||||||||||||
Sbjct: 43 cgttctgcctccatccagcggaaccccatgaccttgaagcgca 1
>gb|BM374292.1|BM374292 EBpi03_SQ003_D13_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_D13 5', mRNA sequence
Length = 294
Score = 109 bits (55), Expect = 2e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 245 gaagcagttcacagcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattgg 304
||||||| |||||||||||| ||||| |||||||| | || |||||||||||||| |||
Sbjct: 103 gaagcagctcacagcggcccgaggaaatcaccagccagcgacgcaaggagctggaactgg 44
Query: 305 cggtcagcctccatccagcggaaccctaggaccttgaagcgca 347
|| || |||||||||||||||||||| | ||||||||||||||
Sbjct: 43 cgttctgcctccatccagcggaaccccatgaccttgaagcgca 1
>gb|BJ469039.1|BJ469039 BJ469039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12l17 5', mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 851 agggcggcggcgccggcggt 870
||||||||||||||||||||
Sbjct: 231 agggcggcggcgccggcggt 250
>gb|BQ462912.1|BQ462912 HI02G10r HI Hordeum vulgare subsp. vulgare cDNA clone HI02G10
5-PRIME, mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 851 agggcggcggcgccggcggt 870
||||||||||||||||||||
Sbjct: 298 agggcggcggcgccggcggt 317
>gb|CA030163.1|CA030163 HX06E08r HX Hordeum vulgare subsp. vulgare cDNA clone HX06E08
5-PRIME, mRNA sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 851 agggcggcggcgccggcggt 870
||||||||||||||||||||
Sbjct: 327 agggcggcggcgccggcggt 346
>gb|AV919983.1|AV919983 AV919983 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8m22 3', mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 253 agaacctgtttgacctgtg 271
>gb|AV921002.1|AV921002 AV921002 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h13 3', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 267 agaacctgtttgacctgtg 285
>gb|AV921834.1|AV921834 AV921834 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13c19 3', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 192 agaacctgtttgacctgtg 210
>gb|AV932050.1|AV932050 AV932050 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a21 5', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 534 agaacctgtttgacctgtg 516
>gb|AV932620.1|AV932620 AV932620 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1g15 5', mRNA sequence
Length = 557
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 503 agaacctgtttgacctgtg 485
>gb|AV932666.1|AV932666 AV932666 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1j11 5', mRNA sequence
Length = 608
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 512 agaacctgtttgacctgtg 494
>gb|AV933223.1|AV933223 AV933223 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5o05 5', mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 526 agaacctgtttgacctgtg 508
>gb|AV934728.1|AV934728 AV934728 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1g15 3', mRNA sequence
Length = 495
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|AV934893.1|AV934893 AV934893 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a21 3', mRNA sequence
Length = 596
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 225 agaacctgtttgacctgtg 243
>gb|AV935008.1|AV935008 AV935008 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2i15 3', mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|AV935095.1|AV935095 AV935095 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2n23 3', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|AV936769.1|AV936769 AV936769 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5o05 3', mRNA sequence
Length = 715
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 252 agaacctgtttgacctgtg 270
>gb|AJ462225.1|AJ462225 AJ462225 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200015C08F1, mRNA sequence
Length = 180
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 75 agaacctgtttgacctgtg 57
>gb|AJ462226.1|AJ462226 AJ462226 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200042A03F1, mRNA sequence
Length = 180
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 63 agaacctgtttgacctgtg 45
>gb|BJ452941.1|BJ452941 BJ452941 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41a11 5', mRNA sequence
Length = 683
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 478 agaacctgtttgacctgtg 460
>gb|BJ460490.1|BJ460490 BJ460490 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41a11 3', mRNA sequence
Length = 672
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|BJ465957.1|BJ465957 BJ465957 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28a20 3', mRNA sequence
Length = 253
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 163 agaacctgtttgacctgtg 181
>gb|BJ466660.1|BJ466660 BJ466660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33e20 3', mRNA sequence
Length = 696
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 258 agaacctgtttgacctgtg 276
>gb|BJ469480.1|BJ469480 BJ469480 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23e10 5', mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 539 agaacctgtttgacctgtg 521
>gb|BJ471508.1|BJ471508 BJ471508 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18p15 5', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 526 agaacctgtttgacctgtg 508
>gb|BJ473912.1|BJ473912 BJ473912 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17k24 3', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|BJ474070.1|BJ474070 BJ474070 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18l23 3', mRNA sequence
Length = 750
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 250 agaacctgtttgacctgtg 268
>gb|BJ474090.1|BJ474090 BJ474090 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18p15 3', mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 253 agaacctgtttgacctgtg 271
>gb|BJ474672.1|BJ474672 BJ474672 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20j03 3', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 189 agaacctgtttgacctgtg 207
>gb|BJ474789.1|BJ474789 BJ474789 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22g15 3', mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|BJ475180.1|BJ475180 BJ475180 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21p09 3', mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 231 agaacctgtttgacctgtg 249
>gb|BJ475897.1|BJ475897 BJ475897 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30h17 3', mRNA sequence
Length = 557
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 190 agaacctgtttgacctgtg 208
>gb|BJ476777.1|BJ476777 BJ476777 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37a03 3', mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 224 agaacctgtttgacctgtg 242
>gb|BJ477287.1|BJ477287 BJ477287 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16h23 3', mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 254 agaacctgtttgacctgtg 272
>gb|BQ656965.1|BQ656965 HA01D22u HA Hordeum vulgare subsp. vulgare cDNA clone HA01D22
3-PRIME, mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 246 agaacctgtttgacctgtg 264
>gb|BQ660803.1|BQ660803 HI05I16u HI Hordeum vulgare subsp. vulgare cDNA clone HI05I16
3-PRIME, mRNA sequence
Length = 443
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 852 gggcggcggcgccggcggt 870
|||||||||||||||||||
Sbjct: 382 gggcggcggcgccggcggt 400
>gb|BM376856.2|BM376856 EBem05_SQ003_G21_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_G21 5', mRNA sequence
Length = 516
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 257 agaacctgtttgacctgtg 239
>gb|BM372340.2|BM372340 EBro03_SQ004_L02_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_L02 5', mRNA sequence
Length = 449
Score = 38.2 bits (19), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 694 agccttgcggagcaggaggcccttgcggtcc 724
|||||||||| ||||||||||||||||||
Sbjct: 428 agccttgcggtcgaggaggcccttgcggtcc 398
>gb|BQ766519.1|BQ766519 EBro08_SQ006_G07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_G07 5', mRNA sequence
Length = 491
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 205 agaacctgtttgacctgtg 187
>gb|BU986671.1|BU986671 HF12J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF12J07
5-PRIME, mRNA sequence
Length = 605
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 321 agaacctgtttgacctgtg 303
>gb|CA006529.1|CA006529 HU13E21u HU Hordeum vulgare subsp. vulgare cDNA clone HU13E21
3-PRIME, mRNA sequence
Length = 374
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 259 agaacctgtttgacctgtg 277
>gb|CA015953.1|CA015953 HV11K09u HV Hordeum vulgare subsp. vulgare cDNA clone HV11K09
3-PRIME, mRNA sequence
Length = 318
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226 agaacctgtttgacctgtg 244
|||||||||||||||||||
Sbjct: 237 agaacctgtttgacctgtg 255
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,181
Number of Sequences: 312970
Number of extensions: 110181
Number of successful extensions: 33590
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33535
Number of HSP's gapped (non-prelim): 55
length of query: 876
length of database: 175,134,539
effective HSP length: 19
effective length of query: 857
effective length of database: 169,188,109
effective search space: 144994209413
effective search space used: 144994209413
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)