BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550132.2.1
(603 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike... 313 4e-084
gb|CV060332.1|CV060332 BNEL57a10 Barley EST endosperm libra... 260 5e-068
gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA li... 80 9e-014
gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA li... 80 9e-014
gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA li... 80 9e-014
gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA li... 80 9e-014
gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. v... 80 9e-014
gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. v... 80 9e-014
gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. v... 80 9e-014
gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day ger... 80 9e-014
gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. v... 80 9e-014
gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. v... 80 9e-014
gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. v... 80 9e-014
gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. v... 80 9e-014
gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. v... 80 9e-014
gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. v... 76 1e-012
gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedl... 64 6e-009
gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedl... 64 6e-009
gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedl... 64 6e-009
gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots... 56 1e-006
gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, sal... 56 1e-006
gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. v... 56 1e-006
gb|AV913129.1|AV913129 AV913129 K. Sato unpublished cDNA li... 40 0.082
>gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011N01f, mRNA sequence
Length = 525
Score = 313 bits (158), Expect = 4e-084
Identities = 272/310 (87%)
Strand = Plus / Minus
Query: 155 agcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcag 214
|||||||||||||| ||||||| ||||| || ||||||||||| || ||||| ||||||
Sbjct: 310 agcgcgtgcatgccgtcgtcctgcccgaacccactcatcttgcgccccccgaacgggcag 251
Query: 215 tcgctgcccatggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcacc 274
|||||| ||||||||||||||||||||||||||||||||||||| || | ||||| | |
Sbjct: 250 tcgctgtccatggcgaagtagcagttcacccacaccaccccggcacggatcgaccgcgtc 191
Query: 275 acccggttcgccacgtccaggtcccgcgtcaccacccccgcccccagcccgtaccgcgtg 334
| || ||| |||||||| | || | ||||||||||||||| |||||||||||| ||||
Sbjct: 190 atcctgttggccacgtcgatgttcttggtcaccacccccgccgccagcccgtacctcgtg 131
Query: 335 tcgttcgccctcgcgatcgcctcctccaccggcttgaacttcatcaggcacatgacgggt 394
| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130 ttgttggccctcgcgatcgcctcctccaccgtggtgaacttcatcaggcacatgacgggc 71
Query: 395 ccgaagatctcctccttcgctatgatcatgtcctccttgacgttggtgaaaactgtgggc 454
||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 70 ccgaagatctcctcccccgctatgatcatgtcatccttgacatcggtgaaaactgtgggc 11
Query: 455 tcaatgtagt 464
|| |||||||
Sbjct: 10 tcgatgtagt 1
>gb|CV060332.1|CV060332 BNEL57a10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL57a10 5' similar to cytosolic
aldehyde dehydrogenase RF2C, mRNA sequence
Length = 551
Score = 260 bits (131), Expect = 5e-068
Identities = 218/247 (88%)
Strand = Plus / Minus
Query: 119 ggcgtgacgacggacttgacggccaggtacttgtcgagcgcgtgcatgccctcgtccttg 178
||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 251 ggcgtgacgacggccttgacggcgaggaacttgtcgagcgcgtgcatgccgtcgtccttg 192
Query: 179 ccgaagccgctcatcttgcggccgccgaaggggcagtcgctgcccatggcgaagtagcag 238
||||| || ||||||||||| || ||||| |||||||||||| |||||||||||||||||
Sbjct: 191 ccgaacccactcatcttgcgccccccgaacgggcagtcgctgtccatggcgaagtagcag 132
Query: 239 ttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgccacgtccaggtcc 298
|||||||||||||||||||| || | ||||| | || || ||| |||||||| | || |
Sbjct: 131 ttcacccacaccaccccggcacggatcgaccgcgtcatcctgttggccacgtcgatgttc 72
Query: 299 cgcgtcaccacccccgcccccagcccgtaccgcgtgtcgttcgccctcgcgatcgcctcc 358
||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||
Sbjct: 71 ttggtcaccacccccgccgccagcccgtacctcgtgttgttggccctcgcgatcgcctcc 12
Query: 359 tccaccg 365
|||||||
Sbjct: 11 tccaccg 5
>gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11p17 3', mRNA sequence
Length = 614
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 116 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 175
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 176 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 231
>gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11e16 3', mRNA sequence
Length = 636
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 173 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 232
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 233 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 288
>gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 5', mRNA sequence
Length = 670
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 592 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 533
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 532 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 477
>gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 3', mRNA sequence
Length = 706
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 114 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 173
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 174 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 229
>gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
5-PRIME, mRNA sequence
Length = 511
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 350 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 291
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 290 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 235
>gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B02
5-PRIME, mRNA sequence
Length = 438
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 155 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 214
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 215 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 270
>gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
3-PRIME, mRNA sequence
Length = 475
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 163 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 222
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 223 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 278
>gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N02 5', mRNA sequence
Length = 347
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 12 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 71
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 72 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 127
>gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA25C12
5-PRIME, mRNA sequence
Length = 572
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 420 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 361
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 360 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 305
>gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. vulgare cDNA clone HF03J09
5-PRIME, mRNA sequence
Length = 526
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 521 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 462
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 461 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 406
>gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS07N10
3-PRIME, mRNA sequence
Length = 574
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 113 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 172
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 173 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 228
>gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. vulgare cDNA clone HT12M08
3-PRIME, mRNA sequence
Length = 532
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 181 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 240
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 241 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 296
>gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. vulgare cDNA clone HT14K09
5-PRIME, mRNA sequence
Length = 584
Score = 79.8 bits (40), Expect = 9e-014
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 404 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 345
Query: 202 gccgaaggggcagtcgctgcccatggcgaagtagcagttcacccacaccaccccgg 257
|||||| ||| ||| | | | ||||||||||||||| ||||| || |||||||
Sbjct: 344 gccgaacggggcgtccgggtcgaaggcgaagtagcagttaacccagacgaccccgg 289
>gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40A05
5-PRIME, mRNA sequence
Length = 530
Score = 75.8 bits (38), Expect = 1e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 142 caggtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttgcggcc 201
||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||
Sbjct: 163 caggtacttgtcgagggcatccgtgcccatgtccttgccgaagccgctcatcttgcagcc 222
Query: 202 gccgaa 207
||||||
Sbjct: 223 gccgaa 228
>gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002G19f, mRNA sequence
Length = 844
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
|||||||| || |||| |||||||||||| ||| |||| ||||| ||||||||||| ||
Sbjct: 586 atcgcctcatcgaccgtcttgaacttcatgagggacatcacggggccgaagatctcgtct 527
Query: 410 ttcgctatgatcatgtcctccttgacgt 437
| || || ||||||||||||||||||
Sbjct: 526 tgagcgatcttcatgtcctccttgacgt 499
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacc 244
|||||||||||||||||||
Sbjct: 710 ggcgaagtagcagttcacc 692
>gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021K17f, mRNA sequence
Length = 542
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
|||||||| || |||| |||||||||||| ||| |||| ||||| ||||||||||| ||
Sbjct: 505 atcgcctcatcgaccgtcttgaacttcatgagggacatcacggggccgaagatctcgtct 446
Query: 410 ttcgctatgatcatgtcctccttgacgt 437
| || || ||||||||||||||||||
Sbjct: 445 tgagcgatcttcatgtcctccttgacgt 418
>gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P08f, mRNA sequence
Length = 727
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcctcc 409
|||||||| || |||| |||||||||||| ||| |||| ||||| ||||||||||| ||
Sbjct: 505 atcgcctcatcgaccgtcttgaacttcatgagggacatcacggggccgaagatctcgtct 446
Query: 410 ttcgctatgatcatgtcctccttgacgt 437
| || || ||||||||||||||||||
Sbjct: 445 tgagcgatcttcatgtcctccttgacgt 418
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 230 aagtagcagttcacccacac 249
||||||||||||||||||||
Sbjct: 625 aagtagcagttcacccacac 606
>gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05C24u 3', mRNA sequence
Length = 556
Score = 56.0 bits (28), Expect = 1e-006
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 163 catgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcagtcgctgcc 222
|||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |
Sbjct: 305 catgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcctcggggtc 364
Query: 223 catggcgaagtagcagttcacccacaccaccccggcgcgcaccgacct 270
| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 365 gaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgacct 412
Score = 40.1 bits (20), Expect = 0.082
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 350 atcgcctcctccaccggcttgaacttcatcaggcacatgacggg 393
|||||||| || |||| |||||||||||| ||| |||| |||||
Sbjct: 493 atcgcctcatcgaccgtcttgaacttcatgagggacatcacggg 536
>gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_O18 5', mRNA sequence
Length = 423
Score = 56.0 bits (28), Expect = 1e-006
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 163 catgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcagtcgctgcc 222
|||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |
Sbjct: 206 catgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcctcggggtc 147
Query: 223 catggcgaagtagcagttcacccacaccaccccggcgcgcaccgacct 270
| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 146 gaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgacct 99
>gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. vulgare cDNA clone HP05E21
5-PRIME, mRNA sequence
Length = 373
Score = 56.0 bits (28), Expect = 1e-006
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 163 catgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcagtcgctgcc 222
|||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |
Sbjct: 192 catgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcctcggggtc 133
Query: 223 catggcgaagtagcagttcacccacaccaccccggcgcgcaccgacct 270
| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 132 gaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgacct 85
>gb|AV913129.1|AV913129 AV913129 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11p17 5', mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.082
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccgg 257
||||||||||||||| ||||| || |||||||
Sbjct: 548 ggcgaagtagcagttaacccagacgaccccgg 517
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,659
Number of Sequences: 312970
Number of extensions: 84659
Number of successful extensions: 22331
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22280
Number of HSP's gapped (non-prelim): 48
length of query: 603
length of database: 175,134,539
effective HSP length: 19
effective length of query: 584
effective length of database: 169,188,109
effective search space: 98805855656
effective search space used: 98805855656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)