BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542512.2.1
(834 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots... 202 1e-050
gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedl... 180 5e-044
gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. v... 170 5e-041
gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots... 143 1e-032
gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike... 139 2e-031
gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. v... 125 2e-027
gb|BG299631.1|BG299631 HVSMEa0021C22f Hordeum vulgare seedl... 103 9e-021
gb|BQ664508.1|BQ664508 HV03K07u HV Hordeum vulgare subsp. v... 100 1e-019
gb|CA000465.1|CA000465 HS08E18u HS Hordeum vulgare subsp. v... 100 1e-019
gb|BQ471837.1|BQ471837 HV03K07r HV Hordeum vulgare subsp. v... 86 2e-015
gb|AL502922.1|AL502922 AL502922 Hordeum vulgare Barke roots... 76 2e-012
gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. v... 74 8e-012
gb|BU989362.1|BU989362 HF21I13r HF Hordeum vulgare subsp. v... 56 2e-006
gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedl... 54 8e-006
gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. v... 46 0.002
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 44 0.007
gb|BI955765.1|BI955765 HVSMEm0024G17f Hordeum vulgare green... 42 0.029
gb|AJ435273.1|AJ435273 AJ435273 S00002 Hordeum vulgare subs... 42 0.029
gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA,... 42 0.029
gb|BQ762245.1|BQ762245 EBro01_SQ005_B10_R root, 3 week, hyd... 42 0.029
gb|CA023650.1|CA023650 HZ46P09r HZ Hordeum vulgare subsp. v... 42 0.029
gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots... 40 0.11
gb|AL505778.1|AL505778 AL505778 Hordeum vulgare Barke roots... 40 0.11
gb|BG300890.1|BG300890 HVSMEb0018N07f Hordeum vulgare seedl... 40 0.11
gb|BF620370.2|BF620370 HVSMEc0019K06f Hordeum vulgare seedl... 40 0.11
gb|BI948176.1|BI948176 HVSMEl0008H22f Hordeum vulgare spike... 40 0.11
gb|BI952928.1|BI952928 HVSMEm0008H17f Hordeum vulgare green... 40 0.11
gb|BF264433.2|BF264433 HV_CEa0009G15f Hordeum vulgare seedl... 40 0.11
gb|BF266926.2|BF266926 HV_CEa0016H04f Hordeum vulgare seedl... 40 0.11
gb|BE519842.2|BE519842 HV_CEb0021G19f Hordeum vulgare seedl... 40 0.11
gb|AV913918.1|AV913918 AV913918 K. Sato unpublished cDNA li... 40 0.11
gb|AV921531.1|AV921531 AV921531 K. Sato unpublished cDNA li... 40 0.11
gb|AV932315.1|AV932315 AV932315 K. Sato unpublished cDNA li... 40 0.11
gb|AV935164.1|AV935164 AV935164 K. Sato unpublished cDNA li... 40 0.11
gb|BM816560.1|BM816560 HC105F03_T3.ab1 HC Hordeum vulgare s... 40 0.11
gb|BJ472200.1|BJ472200 BJ472200 K. Sato unpublished cDNA li... 40 0.11
gb|BJ472516.1|BJ472516 BJ472516 K. Sato unpublished cDNA li... 40 0.11
gb|BQ463054.1|BQ463054 HI02O05r HI Hordeum vulgare subsp. v... 40 0.11
gb|BQ766377.1|BQ766377 EBro08_SQ005_G19_R root, 3 week, dro... 40 0.11
gb|BQ767024.1|BQ767024 EBro08_SQ007_E24_R root, 3 week, dro... 40 0.11
gb|BU967510.1|BU967510 HB04I16r BC Hordeum vulgare subsp. v... 40 0.11
gb|CA016384.1|CA016384 HV09C09u HV Hordeum vulgare subsp. v... 40 0.11
gb|CA018612.1|CA018612 HV09C09r HV Hordeum vulgare subsp. v... 40 0.11
gb|CA021259.1|CA021259 HZ39J07r HZ Hordeum vulgare subsp. v... 40 0.11
gb|BJ546902.1|BJ546902 BJ546902 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547214.1|BJ547214 BJ547214 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547222.1|BJ547222 BJ547222 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547230.1|BJ547230 BJ547230 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547280.1|BJ547280 BJ547280 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547713.1|BJ547713 BJ547713 K. Sato unpublished cDNA li... 40 0.11
gb|BJ547745.1|BJ547745 BJ547745 K. Sato unpublished cDNA li... 40 0.11
gb|BJ548222.1|BJ548222 BJ548222 K. Sato unpublished cDNA li... 40 0.11
gb|BJ548453.1|BJ548453 BJ548453 K. Sato unpublished cDNA li... 40 0.11
gb|BJ548463.1|BJ548463 BJ548463 K. Sato unpublished cDNA li... 40 0.11
gb|BJ548519.1|BJ548519 BJ548519 K. Sato unpublished cDNA li... 40 0.11
gb|BJ548775.1|BJ548775 BJ548775 K. Sato unpublished cDNA li... 40 0.11
gb|CB879878.1|CB879878 HP05O06T HP Hordeum vulgare subsp. v... 40 0.11
gb|CV056681.1|CV056681 BNEL1E1 Barley EST endosperm library... 40 0.11
gb|CV058216.1|CV058216 BNEL35f11 Barley EST endosperm libra... 40 0.11
gb|CV063618.1|CV063618 BNEL91c9 Barley EST endosperm librar... 40 0.11
gb|AU252316.1|AU252316 AU252316 salt-stressed barley root c... 40 0.11
gb|AY551434.1| Hordeum vulgare subsp. vulgare ent-kaurene o... 40 0.11
gb|BF626852.1|BF626852 HVSMEb0001I06f Hordeum vulgare seedl... 38 0.45
gb|BI947408.1|BI947408 HVSMEl0005G07f Hordeum vulgare spike... 38 0.45
gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, c... 38 0.45
>gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20u 3', mRNA sequence
Length = 393
Score = 202 bits (102), Expect = 1e-050
Identities = 262/313 (83%), Gaps = 2/313 (0%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| |||||||| |||||||| |||| || |||||||||||| ||||||||||||||
Sbjct: 82 gccggcacggagaccacgtcgtcgacgacggagtgggccatgtcgttgctgctgaaccac 141
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctc 168
|||| |||||||| |||||| |||| |||||||| | |||||||||| ||||| ||
Sbjct: 142 ccggcggcgctgaggaaggcgcaggccgagatcgacgtggccgtgggcacctcccggctg 201
Query: 169 atcaccatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctg 228
| ||| ||||||||||| |||| | ||||||||||||| || | | ||||||||||
Sbjct: 202 gtgaccgccgacgacgtgccccggctcgcctacctgcagtgcatcgtgagcgagacgctg 261
Query: 229 cgcctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtc 288
|| |||||||||| ||| ||| |||||||||||||| ||||| |||||||||||| |||
Sbjct: 262 cggctgtacccggcggcgccgatgctgctgccgcaccagtcgtcggcggactgcaaggtt 321
Query: 289 ggcggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacag 348
||||||||| | ||||| |||||||| ||||| | || | ||||||||||||||||| |
Sbjct: 322 ggcggctacaacgtgccgagcggcacgatgctgatggtga-acgcgtacgccatccaccg 380
Query: 349 ggacccggcggcg 361
||||||||||||
Sbjct: 381 cgacccggcggcg 393
>gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K07f, mRNA sequence
Length = 763
Score = 180 bits (91), Expect = 5e-044
Identities = 239/287 (83%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 178 gacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtac 237
||||||||||| |||| | ||||||||||||| || | | |||||||||||| ||||||
Sbjct: 325 gacgacgtgccccggctcgcctacctgcagtgcatcgtgagcgagacgctgcggctgtac 384
Query: 238 ccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctac 297
|||| ||| ||| |||||||||||||| ||||| |||||||||||| ||| |||||||||
Sbjct: 385 ccggcggcgccgatgctgctgccgcaccagtcgtcggcggactgcaaggttggcggctac 444
Query: 298 gaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacagggacccggc 357
| ||||| |||||||| ||||| | || | ||||||||||||||||| | ||||||||
Sbjct: 445 aacgtgccgagcggcacgatgctgatggtga-acgcgtacgccatccaccgcgacccggc 503
Query: 358 ggcgtgggaggagccggacgagttcaggccggagcggttccgcgacggcaaggccgaggg 417
|||||||||| |||| |||||| |||||||||||| |||||||||||||||||
Sbjct: 504 ggcgtgggagcggccgctggagttcgtcccggagcggttcgaggacggcaaggccgaggg 563
Query: 418 ccggctgatgctgccgttcgggatgggacggcgcaggtgccccgggg 464
||| | ||| | |||||||||||||| | || ||||||||||||
Sbjct: 564 gcggttcatgatcccgttcgggatgggccttcggcggtgccccgggg 610
Score = 103 bits (52), Expect = 9e-021
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| |||||||| |||||||| |||| || |||||||||||| ||||||||||||||
Sbjct: 196 gccggcacggagaccacgtcgtcgacgacggagtgggccatgtcgttgctgctgaaccac 255
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
|||| |||||||| |||||| |||| |||||||| | ||||||||||
Sbjct: 256 ccggcggcgctgaggaaggcgcaggccgagatcgacgtggccgtgggc 303
>gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. vulgare cDNA clone HS01N10
3-PRIME, mRNA sequence
Length = 504
Score = 170 bits (86), Expect = 5e-041
Identities = 189/222 (85%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 250 ctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgc 309
|||||||||||||||||||| | || ||||||| ||||||||||||||| ||||| ||
Sbjct: 504 ctgctgctgccgcacgagtcctccgccgactgcaaggtcggcggctacgacgtgccgagc 445
Query: 310 ggcacgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggagga 369
||||| ||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 ggcaccatgctgatcgtga-acgcgtacgccatccacagggacccggcgacgtgggagga 386
Query: 370 gccggacgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgct 429
||| | |||| |||||||||||||| |||||||||| ||| || | |||| || |
Sbjct: 385 cccgacggcgttccggccggagcggttcgaggacggcaagggcgacgggctgctgctgat 326
Query: 430 gccgttcgggatgggacggcgcaggtgccccggggagacgct 471
||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct: 325 gccgttcgggatggggcggcggaggtgccccggcgaggcgct 284
>gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20T 5', mRNA sequence
Length = 700
Score = 143 bits (72), Expect = 1e-032
Identities = 221/271 (81%)
Strand = Plus / Minus
Query: 334 gtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggagcg 393
||||||||||||| | |||||||||||||||||| |||| |||||| ||||||||
Sbjct: 543 gtacgccatccaccgcgacccggcggcgtgggagcggccgctggagttcgtcccggagcg 484
Query: 394 gttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatgggacggcgcag 453
|||| ||||||||||||||||| ||| | ||| | |||||||||||||| || || |
Sbjct: 483 gttcgaggacggcaaggccgaggggcggttcatgatcccgttcgggatgggccgccggcg 424
Query: 454 gtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgctcatcca 513
|||||||||||| ||||| || ||||||||| |||| | ||||| |||||||| | ||
Sbjct: 423 gtgccccgggganacgctggcgctgcggaccatcggcatggtgctggccacgctggtgca 364
Query: 514 gtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggcgggct 573
||||||| |||||||| | |||| ||| ||| | |||||||| ||||||||||||||
Sbjct: 363 gtgcttcgactgggaccgcgtcgacggcaaggaggtggacatgacggagagcggcgggct 304
Query: 574 caccatgccccgggccgtcccgttggaggcc 604
|||||| ||| |||||| ||| | ||||||
Sbjct: 303 caccatccccaaggccgtgccgctcgaggcc 273
>gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011O14f, mRNA sequence
Length = 813
Score = 139 bits (70), Expect = 2e-031
Identities = 150/174 (86%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 197 gctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgc 256
||||||| |||||| |||||||||||||||| ||| ||||||||| ||| ||||||||||
Sbjct: 308 gctacctccagtgcatcatcaacgagacgctacgcatgtacccggcggcgccgctgctgc 367
Query: 257 tgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgc 316
||||||||||||| | || ||||||| ||||||||||||||| |||| |||| ||
Sbjct: 368 tgccgcacgagtcctccgccgactgcaaggtcggcggctacgacttgccgagcgggacca 427
Query: 317 t-gctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggagga 369
| |||| |||| | ||||||||||||||||||||||||||| | ||||||||||
Sbjct: 428 tggctgatcgtga-acgcgtacgccatccacagggacccggggacgtgggagga 480
Score = 121 bits (61), Expect = 4e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 52 cggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccaccc 111
||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct: 162 cggaacggagacgacctcaaccacgatagaatgggcgatgtcgctgctgctgaaccaccc 221
Query: 112 ggaggcgctgaagaaggccgaggcagagatcga 144
|| |||||| ||||||||| |||| ||||||||
Sbjct: 222 ggcggcgctcaagaaggcccaggccgagatcga 254
>gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. vulgare cDNA clone HT06D18
5-PRIME, mRNA sequence
Length = 564
Score = 125 bits (63), Expect = 2e-027
Identities = 180/219 (82%)
Strand = Plus / Plus
Query: 386 ccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatggga 445
|||||||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||
Sbjct: 35 ccggagcggttcgaggacggcaaggccgaggggcggttcatgatcccgttcgggatgggc 94
Query: 446 cggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacg 505
|| || ||||||||||||||||||| || ||||||||| |||| | ||||| ||||||
Sbjct: 95 cgccggcggtgccccggggagacgctggcgctgcggaccatcggcatggtgctggccacg 154
Query: 506 ctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagc 565
|| | ||||||||| |||||||| | |||| ||| ||| | |||||||| ||||||
Sbjct: 155 ctggtgcagtgcttcgactgggaccgcgtcgacggcaaggaggtggacatgacggagagc 214
Query: 566 ggcgggctcaccatgccccgggccgtcccgttggaggcc 604
|||||||||||||| ||| |||||| ||| | ||||||
Sbjct: 215 ggcgggctcaccatccccaaggccgtgccgctcgaggcc 253
>gb|BG299631.1|BG299631 HVSMEa0021C22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021C22f, mRNA sequence
Length = 817
Score = 103 bits (52), Expect = 9e-021
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| |||||| | |||| || ||||| ||||||||||| |||||||||
Sbjct: 428 gccggaacggagaccacgtcgacgacgacggagtgggctatgtcgctgcttctgaaccac 487
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
|||| |||||||| |||||| |||| |||||||| ||||||||||||
Sbjct: 488 ccggcggcgctgaggaaggcgcaggccgagatcgacgcggccgtgggc 535
Score = 42.1 bits (21), Expect = 0.029
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 178 gacgacgtgccggggctgggctacctgcagtgc 210
||||||||||| |||||| |||||||||||||
Sbjct: 557 gacgacgtgccccggctggtctacctgcagtgc 589
>gb|BQ664508.1|BQ664508 HV03K07u HV Hordeum vulgare subsp. vulgare cDNA clone HV03K07
3-PRIME, mRNA sequence
Length = 443
Score = 99.6 bits (50), Expect = 1e-019
Identities = 143/174 (82%)
Strand = Plus / Minus
Query: 431 ccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggc 490
|||||||||||||| || || ||||||||||||||||||| || ||||||||| ||||
Sbjct: 433 ccgttcgggatgggccgccggcggtgccccggggagacgctggcgctgcggaccatcggc 374
Query: 491 ctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatc 550
| ||||| |||||||| | ||||||||| |||||||| | |||| ||| ||| |
Sbjct: 373 atggtgctggccacgctggtgcagtgcttcgactgggaccgcgtcgacggcaaggaggtg 314
Query: 551 gacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggcc 604
|||||||| |||||||||||||||||||| ||| |||||| ||| | ||||||
Sbjct: 313 gacatgacggagagcggcgggctcaccatccccaaggccgtgccgctcgaggcc 260
>gb|CA000465.1|CA000465 HS08E18u HS Hordeum vulgare subsp. vulgare cDNA clone HS08E18
3-PRIME, mRNA sequence
Length = 492
Score = 99.6 bits (50), Expect = 1e-019
Identities = 143/174 (82%)
Strand = Plus / Minus
Query: 431 ccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggc 490
|||||||||||||| || || ||||||||||||||||||| || ||||||||| ||||
Sbjct: 486 ccgttcgggatgggccgccggcggtgccccggggagacgctggcgctgcggaccatcggc 427
Query: 491 ctcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatc 550
| ||||| |||||||| | ||||||||| |||||||| | |||| ||| ||| |
Sbjct: 426 atggtgctggccacgctggtgcagtgcttcgactgggaccgcgtcgacggcaaggaggtg 367
Query: 551 gacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggcc 604
|||||||| |||||||||||||||||||| ||| |||||| ||| | ||||||
Sbjct: 366 gacatgacggagagcggcgggctcaccatccccaaggccgtgccgctcgaggcc 313
>gb|BQ471837.1|BQ471837 HV03K07r HV Hordeum vulgare subsp. vulgare cDNA clone HV03K07
5-PRIME, mRNA sequence
Length = 513
Score = 85.7 bits (43), Expect = 2e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| |||||| | |||| || ||||| ||||||||||| |||||||||
Sbjct: 418 gccggaacggagaccacgtcgacgacgacggagtgggctatgtcgctgcttctgaaccac 477
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcga 144
|||| |||||||| |||||| |||| ||||||||
Sbjct: 478 ccggcggcgctgaggaaggcgcaggccgagatcga 512
>gb|AL502922.1|AL502922 AL502922 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C15u 3', mRNA sequence
Length = 421
Score = 75.8 bits (38), Expect = 2e-012
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 453 ggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgctcatcc 512
||||||||||||||||||| || |||||| || |||| | ||||| |||||||| | |
Sbjct: 407 ggtgccccggggagacgctggcgctgcggnccagcggcatggtgctggccacgctggtgc 348
Query: 513 agtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggcgggc 572
|||||||| |||||||| | |||| ||| ||| | |||||||| |||| ||||||||
Sbjct: 347 agtgcttcgactgggaccgcgtcgacggcaaggaggtngacatgacggagancggcgggc 288
Query: 573 tcaccat 579
|||||||
Sbjct: 287 tcaccat 281
>gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS02N10
3-PRIME, mRNA sequence
Length = 448
Score = 73.8 bits (37), Expect = 8e-012
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 351 acccggcggcgtgggaggagccggacgagttcaggccggagcggttccgcgacggcaagg 410
|||||||| |||||||||| ||| | |||| |||||||||||||| ||||||||||
Sbjct: 448 acccggcgacgtgggaggacccgacggcgttccggccggagcggttcgaggacggcaagg 389
Query: 411 ccgagggccggctgatgctgccgttcgggatgggacggcgcaggtgccccggggagacgc 470
||| || | |||| || | |||||||||||||| ||||| ||||||||||| ||| |||
Sbjct: 388 gcgacgggctgctgctgataccgttcgggatggggcggcggaggtgccccggcgaggcgc 329
Query: 471 t 471
|
Sbjct: 328 t 328
>gb|BU989362.1|BU989362 HF21I13r HF Hordeum vulgare subsp. vulgare cDNA clone HF21I13
5-PRIME, mRNA sequence
Length = 499
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 56 acggagacgacgtcgtccacgatagaatgggccatg 91
||||||||||| || |||||||||||||||||||||
Sbjct: 37 acggagacgacttcttccacgatagaatgggccatg 72
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 376 cgagttcaggccggagcggttccgcgac 403
|||||||||||||||| |||||| ||||
Sbjct: 348 cgagttcaggccggagaggttccacgac 375
>gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011B08f, mRNA sequence
Length = 994
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 348 gggacccggcggcgtgggaggagccggacgagttcaggccggagcggttcc 398
|||||||||||||||||||| ||| ||||||||| ||||||| ||||||
Sbjct: 279 gggacccggcggcgtgggagaggcccgacgagttcgtgccggagaggttcc 329
>gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. vulgare cDNA clone HA04M20
5-PRIME, mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 361 gtgggaggagccggacgagttcaggccggag 391
||||||| ||||||| |||||||||||||||
Sbjct: 127 gtgggagaagccggaggagttcaggccggag 157
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 372 cggacgagttcaggccggagcggttc 397
|||| |||||||||||||||||||||
Sbjct: 394 cggaggagttcaggccggagcggttc 419
>gb|BI955765.1|BI955765 HVSMEm0024G17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024G17f, mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.029
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttcc 398
||||||||||||| |||||||||| ||||
Sbjct: 311 gccggacgagttccggccggagcgcttcc 339
>gb|AJ435273.1|AJ435273 AJ435273 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200083F08F1, mRNA sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.029
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttcc 398
||||||||||||| |||||||||| ||||
Sbjct: 8 gccggacgagttccggccggagcgcttcc 36
>gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_J15 5', mRNA sequence
Length = 490
Score = 42.1 bits (21), Expect = 0.029
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttcc 398
||||||||||||| |||||||||| ||||
Sbjct: 177 gccggacgagttccggccggagcgcttcc 205
>gb|BQ762245.1|BQ762245 EBro01_SQ005_B10_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_B10 5', mRNA sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 374 gacgagttcaggccggagcggttcc 398
||||||||| |||||||||||||||
Sbjct: 58 gacgagttccggccggagcggttcc 82
>gb|CA023650.1|CA023650 HZ46P09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46P09
5-PRIME, mRNA sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.029
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttcc 398
||||||||||||| |||||||||| ||||
Sbjct: 103 gccggacgagttccggccggagcgcttcc 131
>gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05H19V 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 370 gccggacgagttcaggccggagcggttc 397
|||||| ||||||| |||||||||||||
Sbjct: 124 gccggaggagttcatgccggagcggttc 151
>gb|AL505778.1|AL505778 AL505778 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H24V 5', mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 397 gacccggcggcgtgggagga 416
>gb|BG300890.1|BG300890 HVSMEb0018N07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018N07f, mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 380 gacccggcggcgtgggagga 399
>gb|BF620370.2|BF620370 HVSMEc0019K06f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019K06f, mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 573 gacccggcggcgtgggagga 592
>gb|BI948176.1|BI948176 HVSMEl0008H22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008H22f, mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 236 gacccggcggcgtgggagga 255
>gb|BI952928.1|BI952928 HVSMEm0008H17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008H17f, mRNA sequence
Length = 872
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 375 acgagttcaggccggagcggttcc 398
|||||||| |||||||||||||||
Sbjct: 382 acgagttccggccggagcggttcc 405
>gb|BF264433.2|BF264433 HV_CEa0009G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009G15f, mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 226 gacccggcggcgtgggagga 245
>gb|BF266926.2|BF266926 HV_CEa0016H04f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016H04f, mRNA sequence
Length = 377
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 242 gacccggcggcgtgggagga 261
>gb|BE519842.2|BE519842 HV_CEb0021G19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021G19f, mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 375 acgagttcaggccggagcggttcc 398
|||||||| |||||||||||||||
Sbjct: 199 acgagttccggccggagcggttcc 222
>gb|AV913918.1|AV913918 AV913918 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m02 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 369 gacccggcggcgtgggagga 388
>gb|AV921531.1|AV921531 AV921531 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m02 3', mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 530 gacccggcggcgtgggagga 511
>gb|AV932315.1|AV932315 AV932315 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3c03 5', mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 69 gacccggcggcgtgggagga 88
>gb|AV935164.1|AV935164 AV935164 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3c03 3', mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 476 gacccggcggcgtgggagga 457
>gb|BM816560.1|BM816560 HC105F03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F03_T3.ab1 similar to Leucyl
aminopeptidase,Cathepsin B, mRNA sequence
Length = 881
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 288 gacccggcggcgtgggagga 307
>gb|BJ472200.1|BJ472200 BJ472200 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32m08 5', mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 69 gacccggcggcgtgggagga 88
>gb|BJ472516.1|BJ472516 BJ472516 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34p23 5', mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 56 gacccggcggcgtgggagga 75
>gb|BQ463054.1|BQ463054 HI02O05r HI Hordeum vulgare subsp. vulgare cDNA clone HI02O05
5-PRIME, mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 485 gacccggcggcgtgggagga 466
>gb|BQ766377.1|BQ766377 EBro08_SQ005_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_G19 5', mRNA sequence
Length = 401
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 375 acgagttcaggccggagcggttcc 398
|||||||| |||||||||||||||
Sbjct: 10 acgagttccggccggagcggttcc 33
>gb|BQ767024.1|BQ767024 EBro08_SQ007_E24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_E24 5', mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 41 gacccggcggcgtgggagga 60
>gb|BU967510.1|BU967510 HB04I16r BC Hordeum vulgare subsp. vulgare cDNA clone HB04I16
5-PRIME, mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 317 gacccggcggcgtgggagga 336
>gb|CA016384.1|CA016384 HV09C09u HV Hordeum vulgare subsp. vulgare cDNA clone HV09C09
3-PRIME, mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 375 acgagttcaggccggagcggttcc 398
|||||||| |||||||||||||||
Sbjct: 393 acgagttccggccggagcggttcc 370
>gb|CA018612.1|CA018612 HV09C09r HV Hordeum vulgare subsp. vulgare cDNA clone HV09C09
5-PRIME, mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 375 acgagttcaggccggagcggttcc 398
|||||||| |||||||||||||||
Sbjct: 348 acgagttccggccggagcggttcc 371
>gb|CA021259.1|CA021259 HZ39J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39J07
5-PRIME, mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 250 gacccggcggcgtgggagga 269
>gb|BJ546902.1|BJ546902 BJ546902 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13m02 5', mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 413 gacccggcggcgtgggagga 432
>gb|BJ547214.1|BJ547214 BJ547214 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25j18 5', mRNA sequence
Length = 288
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 21 gacccggcggcgtgggagga 40
>gb|BJ547222.1|BJ547222 BJ547222 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25l08 5', mRNA sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 366 gacccggcggcgtgggagga 385
>gb|BJ547230.1|BJ547230 BJ547230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25p14 5', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 397 gacccggcggcgtgggagga 416
>gb|BJ547280.1|BJ547280 BJ547280 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29j03 5', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 396 gacccggcggcgtgggagga 415
>gb|BJ547713.1|BJ547713 BJ547713 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35h15 5', mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 gacccggcggcgtgggagga 369
||||||||||||||||||||
Sbjct: 413 gacccggcggcgtgggagga 432
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,311
Number of Sequences: 312970
Number of extensions: 124311
Number of successful extensions: 38080
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37966
Number of HSP's gapped (non-prelim): 104
length of query: 834
length of database: 175,134,539
effective HSP length: 19
effective length of query: 815
effective length of database: 169,188,109
effective search space: 137888308835
effective search space used: 137888308835
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)