BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch... 1677 0.0
gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch... 1350 0.0
gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. v... 634 e-180
gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 ... 579 e-163
gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 ... 563 e-158
gb|BU967173.1|BU967173 HB03H24r BC Hordeum vulgare subsp. v... 521 e-146
gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedl... 494 e-138
gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA li... 464 e-129
gb|BU967331.1|BU967331 HB03P08r BC Hordeum vulgare subsp. v... 428 e-118
gb|BU972445.1|BU972445 HB21K16r BC Hordeum vulgare subsp. v... 410 e-112
gb|BU986646.1|BU986646 HF12I02r HF Hordeum vulgare subsp. v... 410 e-112
gb|CB881353.1|CB881353 HM09I19w HM Hordeum vulgare subsp. v... 345 5e-093
gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 ... 331 7e-089
gb|BU995206.1|BU995206 HM09I19r HM Hordeum vulgare subsp. v... 329 3e-088
gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm libra... 317 1e-084
gb|BU966891.1|BU966891 HB02K24r BC Hordeum vulgare subsp. v... 315 4e-084
gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. v... 309 3e-082
gb|CB880027.1|CB880027 HM05E08w HM Hordeum vulgare subsp. v... 309 3e-082
gb|BU970967.1|BU970967 HB16D15r BC Hordeum vulgare subsp. v... 307 1e-081
gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 ... 305 4e-081
gb|BU994498.1|BU994498 HM07E08r HM Hordeum vulgare subsp. v... 305 4e-081
gb|BI948738.1|BI948738 HVSMEl0010K17f Hordeum vulgare spike... 291 6e-077
gb|BG366889.2|BG366889 HVSMEi0008N13f Hordeum vulgare 20 DA... 274 1e-071
gb|AV913706.1|AV913706 AV913706 K. Sato unpublished cDNA li... 270 2e-070
gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm librar... 264 1e-068
gb|BQ755138.1|BQ755138 EBed02_SQ003_N09_R endosperm, 8 DPA,... 256 3e-066
gb|AV921312.1|AV921312 AV921312 K. Sato unpublished cDNA li... 240 2e-061
gb|BU996927.1|BU996927 HI06F01r HI Hordeum vulgare subsp. v... 232 5e-059
gb|BI948391.1|BI948391 HVSMEl0009F19f Hordeum vulgare spike... 220 2e-055
gb|BM443964.2|BM443964 EBem09_SQ002_F04_R embryo, 1 Day ger... 208 7e-052
gb|BM444013.2|BM444013 EBem09_SQ002_L12_R embryo, 1 Day ger... 190 2e-046
gb|BQ471544.1|BQ471544 HV02L24r HV Hordeum vulgare subsp. v... 141 1e-031
gb|AJ432603.1|AJ432603 AJ432603 S00002 Hordeum vulgare subs... 135 9e-030
gb|AW982619.3|AW982619 HVSMEg0003M05f Hordeum vulgare pre-a... 123 3e-026
gb|CA029212.1|CA029212 HZ64I18r HZ Hordeum vulgare subsp. v... 111 1e-022
gb|CV060196.1|CV060196 BNEL55e10 Barley EST endosperm libra... 111 1e-022
gb|BU970082.1|BU970082 HB13I18r BC Hordeum vulgare subsp. v... 96 7e-018
gb|CA025941.1|CA025941 HZ53J13r HZ Hordeum vulgare subsp. v... 96 7e-018
gb|AJ460560.1|AJ460560 AJ460560 S00002 Hordeum vulgare subs... 86 7e-015
gb|CB875153.1|CB875153 HX07H03w HX Hordeum vulgare subsp. v... 78 2e-012
gb|AF064563.1|AF064563 Hordeum vulgare cultivar Bomi starch... 64 3e-008
gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DA... 48 0.002
gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA... 48 0.002
gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. v... 48 0.002
gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. v... 48 0.002
gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. v... 48 0.002
gb|AW983497.2|AW983497 HVSMEg0010N11f Hordeum vulgare pre-a... 42 0.096
gb|BG366769.1|BG366769 HVSMEi0008D20f Hordeum vulgare 20 DA... 42 0.096
gb|BQ472324.1|BQ472324 HB09O20T BC Hordeum vulgare subsp. v... 42 0.096
gb|BM097896.2|BM097896 EBpi03_SQ001_P15_R pistil, 4 DPA, no... 42 0.096
gb|BU968566.1|BU968566 HB07O20r BC Hordeum vulgare subsp. v... 42 0.096
gb|BU969303.1|BU969303 HB11C06r BC Hordeum vulgare subsp. v... 42 0.096
gb|BG416474.1|BG416474 HVSMEk0012G24f Hordeum vulgare testa... 40 0.38
>gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2780
Score = 1677 bits (846), Expect = 0.0
Identities = 1648/1920 (85%)
Strand = Plus / Minus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| | | |||||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 2408 gtgaagtgctctccagtgtgatggatcctaccaaatccaccaaagagtccagcgtctgag 2349
Query: 388 tccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctg 447
|| || |||||||| ||| |||||||||| ||||| | |||||||| ||||||||
Sbjct: 2348 tctaacaccaccttgtacttcccaggctttaagcaaccgacccggtagtcgaaatagcta 2289
Query: 448 ttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctta 507
|| | |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 2288 ttactccagtggaagttgaacacaaataccaagtcccctttttcaaacacgatcacctta 2229
Query: 508 tcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgc 567
|| ||||| |||||||| || | |||||||| || |||||||| || ||||||||| |
Sbjct: 2228 tcttcctcgtgtttccgagatacgtactggtggtctgatgtcataaagccatatttttcc 2169
Query: 568 tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgca 627
|||||||| ||||||||||||||||| | ||||||||||||||||| ||| | ||||||
Sbjct: 2168 tcaagatgctgcattgcctgatcaaattgctgcataccatgatacctgagaaattctgca 2109
Query: 628 tcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaac 687
||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||
Sbjct: 2108 tcacccaggtcaaatcttcgacggcatttgtcgtaactgttgttatttcctgggatgaac 2049
Query: 688 ttaccacttggaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaac 747
|||||| |||||||| ||| || ||||||||||| ||||||||||||||||| || |||
Sbjct: 2048 ttaccagttggaagtacttgtgggcctcttggaaagtctatccattcaggatgcccgaac 1989
Query: 748 tcatttcccatgaaattaagatagccctctcctcctaaacccattgtgataagtctaatc 807
||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1988 tcatttcccataaagttaagataaccctctcctcctaaagccattgtgataagtctaatc 1929
Query: 808 atcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatcgagggccatg 867
|| ||||| | |||||| || |||||||| |||| || ||||||| | || ||||||
Sbjct: 1928 attttatgcagtgctattccgcgatcaatattaggtgtcgaaggtccgttcagagccatg 1869
Query: 868 aaatcatacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgct 927
||||||||||||||||||||||||||||| || |||||||||||||| || || | ||||
Sbjct: 1868 aaatcatacatatccttgtccatcaaccagaatgcaatagtcttgtctccaacaagtgct 1809
Query: 928 tgatcatgactttcagcataagttacacacttctctaaccacctcctatttgtcagtgtg 987
||||||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1808 tgatcatgactttcagcataagtaacacacttttccaaccaccttctatttgttagtgtg 1749
Query: 988 tgcacaatatcacccatcttccaagtttcatcactttgcttgagaaggtcaatccatttg 1047
|||||||||| |||||||| |||| |||||| ||| |||||||| |||||||||||
Sbjct: 1748 tgcacaatattacccatctcccaaccttcatcgcttcctttgagaagttcaatccattta 1689
Query: 1048 tcagccacagccatatgcatccgatagtcaaaacctaccccaccatcgtgaacaggaagg 1107
|| || || |||||||| | |||||||||||||| ||||||||| | ||||||||||||
Sbjct: 1688 tcggcaacggccatatgtaagcgatagtcaaaaccaaccccaccaacttgaacaggaagg 1629
Query: 1108 gcaaatgtaggcattccactaacatcttcaccaatggttacagcctcaggataaagtcca 1167
||||||||||||||||||||||||||||||||||| || || || ||||||||||| |
Sbjct: 1628 gcaaatgtaggcattccactaacatcttcaccaatagtaacggcttcaggataaagcgcg 1569
Query: 1168 tgaattagatcatttaccagcatcaagtaaaccactgcatctacatcggtggcaaagcca 1227
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1568 tgaattagatcattcaccagcatcaagtaaacaactgcatctacatccgtggcaaagcca 1509
Query: 1228 aaatactcattgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatcatg 1287
||||| |||| | || |||| ||||| |||||||||||||| ||||| || |||||||||
Sbjct: 1508 aaatattcatggtagctccctgtaaaggttacttgtaatccatggtgggtatacatcatg 1449
Query: 1288 gaggtcacaccatcaaaacggaaaccatcaaacttatattcctcgagccaccatctagca 1347
|||||| | || || || ||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 1448 gaggtcgcgccgtcgaatcggaaaccatcgaacttatattcctctagccaccatcttgca 1389
Query: 1348 ttggagagaagaaatcttaaaacttcccagttcccatagttaaataggcgagaatcccac 1407
||||| || ||||| |||| ||||||| ||||| ||||| || | ||||||||||||
Sbjct: 1388 ttggaaagtagaaaccttataacttccttattcccgtagttgaacacacgagaatcccac 1329
Query: 1408 atccagtgatggccacgtggaccactgtgaaagtaatgtgtatctgtaccatcaaaacca 1467
|||||||||||||| |||| || | ||||||||||||||||| || ||||||||||||
Sbjct: 1328 atccagtgatggccccgtgagccgccatgaaagtaatgtgtatccgtgccatcaaaacca 1269
Query: 1468 ttcaacccatccagagtattacttgacgcatgactatgaaccacatccatgagaactagc 1527
||||| || |||| ||||||||||| || ||||| ||||| |||||||| || || |||
Sbjct: 1268 ttcaaaccgtccaaggtattacttgatgcgtgactgtgaacaacatccatcaggacaagc 1209
Query: 1528 aaaccaagctcatgtgctctatcaatcaaagacttcaattcttctggggtaccaaaacga 1587
||||||||||| || |||||||||||||| || || || |||||||||| ||||||||
Sbjct: 1208 aaaccaagctcgtgagctctatcaatcaaggattttaaatcttctggggacccaaaacgg 1149
Query: 1588 ctacttggcgcnnnnnnnttagttacatggtatccaaagcttccataatatgagtgctct 1647
|||||||| || || || |||||||| |||||||||||||| ||||| ||||||
Sbjct: 1148 ctacttggtgcaaagaaattggtaacatggtacccaaagcttccatagtatgaatgctct 1089
Query: 1648 tggattgccattatttgcactgcattgtatccaagnnnnnnnattcttgggaggacttca 1707
||||||||||||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 1088 tggattgccattatttgaactgcattgtatccaagtcttttaattcttggaagcacctca 1029
Query: 1708 tccctaaagtttacatatgtgtttatcttcggttccgggctactcattccgacatgtgtt 1767
|| || |||||| |||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct: 1028 tctctgaagtttgcatatgtgttgatctttggttccgggctactcatgccaacatgtgtt 969
Query: 1768 tcatatatccgcaatgattttggtcgtttaggttgcgcatgcctgaacacatactttacc 1827
||||||||||||||||||||||||||||||||||| | |||| |||| |||||||| ||
Sbjct: 968 tcatatatccgcaatgattttggtcgtttaggttgaggatgcttgaatacatacttctcc 909
Query: 1828 tcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcactgag 1887
||||||||||| |||||||| || |||| |||||||| |||||||| | |||||| |||
Sbjct: 908 tcttcaggagggtcataatatattccattgtatggtatatctcctggagtctgcacggag 849
Query: 1888 tacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcaccttt 1947
||||||||||| || ||||||||||||||| |||| |||||||||||||| | ||||||
Sbjct: 848 tacttgatccaagcaggaattgaatcctttgtcccagatggagtatccatccgcaccttc 789
Query: 1948 acacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaaatttcc 2007
|| || || ||||||||||| || | | ||||||||||||||| ||||||||||| |||
Sbjct: 788 acccgtgagccatgaggaattggcggcgaaccatctgcattgtttggcagaaaaatctcc 729
Query: 2008 caaacaccaaactcatttttgctcatacgatctgcatttggatcccagttgttgaagtca 2067
|||| ||| || ||||||||||||||| | |||||| |||||||||| |||||||||||
Sbjct: 728 caaatacccaagtcatttttgctcatatggtctgcagttggatcccaattgttgaagtcg 669
Query: 2068 cccaccaatgctgcagaaaatgctccaggagcccattctcgatatgtgataccttccgcg 2127
|| || |||||||||||| ||||||||||||||||||||| || ||||||||||| |||
Sbjct: 668 ccaactaatgctgcagaatctgctccaggagcccattctcggtaagtgataccttcagcg 609
Query: 2128 ctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgt 2187
|||||| ||||||||||||||| || | ||||| || | |||| |||||| || | |
Sbjct: 608 ctgcgaacaaatccaaacttctcgtagccgcgggaaaatacatccatgcctccatcgtat 549
Query: 2188 tcatcaatgtctgaacggattcttctatagaggctgtaccgatactcaagatggtactta 2247
||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 548 tcatcaatgtctgaacgtattctcctatataggctgtatcgatactcaagatggtactta 489
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2554
Score = 1350 bits (681), Expect = 0.0
Identities = 1543/1835 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 2097 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 2038
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||| | ||| ||| | |||||||||||||| |||||
Sbjct: 2037 cttggaacacccaacacggtagtcttttttgctattgctccagtggaagttgaaaacaaa 1978
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 1977 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 1918
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 1917 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 1858
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 1857 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 1798
Query: 654 tttgtcataactgttgttattccctggaataaacttaccacttggaagtctttgcggacc 713
||| |||||||| |||||||| || || | || || || ||||||| ||||||||||
Sbjct: 1797 tttatcataactattgttatttccagggagaactttgccggttggaagagtttgcggacc 1738
Query: 714 tcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagcc 773
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1737 tcttggaaaatctatccattcaggatgcccaaactcatttcccatgaaattaagatagcc 1678
Query: 774 ctctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatc 833
|| || ||||||||||| |||| ||| || ||||| |||||||||||||| ||||||||
Sbjct: 1677 ttcgccacctaaacccatggtgacaagcctgatcattttatgtaatgctatgccacgatc 1618
Query: 834 aatggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaa 893
|||| ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 1617 aatgcgaggggttgaaggtctatccagagccatgaaatcatacatatccttatccatcaa 1558
Query: 894 ccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttac 953
||| || |||||||||||||| || |||| |||||||||||||||||| |||||||| ||
Sbjct: 1557 ccagaatgcaatagtcttgtcaccaactagtgcttgatcatgactttctgcataagtgac 1498
Query: 954 acacttctctaaccacctcctatttgtcagtgtgtgcacaatatcacccatcttccaagt 1013
||||||||| | |||||| |||||||| || |||||||||||||| ||||| |||||||
Sbjct: 1497 acacttctcaagccaccttctatttgttagggtgtgcacaatatcgcccattttccaaga 1438
Query: 1014 ttcatcactttgcttgagaaggtcaatccatttgtcagccacagccatatgcatccgata 1073
||| |||||||||||||| || ||||||||||| || || ||||||||||||| |||||
Sbjct: 1437 ttcgtcactttgcttgaggagttcaatccatttatctgctacagccatatgcaggcgata 1378
Query: 1074 gtcaaaacctaccccaccatcgtgaacaggaagggcaaatgtaggcattccactaacatc 1133
||||||||| || |||||||| | ||||| | | ||||||||||||||| || |||||
Sbjct: 1377 gtcaaaaccaacaccaccatctgggacagggatgcaaaatgtaggcattccgctgacatc 1318
Query: 1134 ttcaccaatggttacagcctcaggataaagtccatgaattagatcatttaccagcatcaa 1193
||||||||||| |||||| || ||||||||||||||||||||||| || |||||||| ||
Sbjct: 1317 ttcaccaatggatacagcatccggataaagtccatgaattagatcgttgaccagcattaa 1258
Query: 1194 gtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagttccccgtaaa 1253
||||||||| ||||| ||||| ||||| || ||||||||||| ||||||| |||||
Sbjct: 1257 gtaaaccaccgcatcaacatcagtggcgaatccaaaatactcgccatagttcccagtaaa 1198
Query: 1254 tgttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaacc 1313
||| | ||||||||| |||||||| ||||||||||| ||||| |||||||| || || ||
Sbjct: 1197 tgtcatttgtaatccatggtgagtatacatcatggaagtcaccccatcaaatcgaaatcc 1138
Query: 1314 atcaaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaacttc 1373
||||||||||||||| || ||||||||||| || || || || | |||||||| |||||
Sbjct: 1137 atcaaacttatattcttcaagccaccatctcgcgtttgacagtaagaatcttaatacttc 1078
Query: 1374 ccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtggaccact 1433
||| |||||||||| || || ||||||||||||||||| |||||||||||||||||||
Sbjct: 1077 ccaactcccatagttgaacagacgagaatcccacatccaatgatggccacgtggaccacc 1018
Query: 1434 gtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtattacttga 1493
||| |||||||||||||| || ||||| ||||||||||| || || || |||||| ||||
Sbjct: 1017 gtggaagtaatgtgtatcagtgccatcgaaaccattcaaaccgtcaagggtattatttga 958
Query: 1494 cgcatgactatgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaat 1553
|| |||||||||||| | |||||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 957 cgaatgactatgaacaatatccataagaacaagcaaaccaagctcatgtgctctatcgat 898
Query: 1554 caaagacttcaattcttctggggtaccaaaacgactacttggcgcnnnnnnnttagttac 1613
||| || || || || ||||| || |||||||| |||||||| || ||||| ||
Sbjct: 897 caaggattttaagtcctctggagttccaaaacggctacttggtgcaaaaaaattagtaac 838
Query: 1614 atggtatccaaagcttccataatatgagtgctcttggattgccattatttgcactgcatt 1673
|||||| |||||||| |||| ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 837 atggtacccaaagctcgcatagtatgaatgctcctggattgccattatctgcactgcatt 778
Query: 1674 gtatccaagnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttat 1733
||||||||| |||||||| || || ||||||||||| || |||||| |||||
Sbjct: 777 gtatccaagccttttaattcttggcagcacctcatccctaaaattagcatatgaatttat 718
Query: 1734 cttcggttccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcg 1793
||||||||||||||| |||||||| | |||| ||||||||||| | ||| | ||||||
Sbjct: 717 cttcggttccgggctgctcattccaatgtgtgattcatatatccttagtgactctggtcg 658
Query: 1794 tttaggttgcgcatgcctgaacacatactttacctcttcaggaggatcataataaatccc 1853
||||||||| | ||| ||| |||||||| |||||||||| ||||||||||| || ||
Sbjct: 657 tttaggttgaggatgttggaagacatacttctcctcttcaggtggatcataatatatgcc 598
Query: 1854 atcatatggtatttctcctggggcctgcactgagtacttgatccaggctggaattgaatc 1913
|| |||||||||| ||||| |||||||| ||| |||||||||| || | |||||||||
Sbjct: 597 attgaatggtatttcacctggagcctgcacagagaacttgatccaagcagaaattgaatc 538
Query: 1914 ctttatccctgatggagtatccattctcacctttacacgagatccatgaggaataggtga 1973
||| | || |||||||||||||| | | ||||||||| || ||||||||||||| |
Sbjct: 537 cttcacaccagatggagtatccatccgtatctttacacgtgagccatgaggaatagcagg 478
Query: 1974 tgtaccatctgcattgttaggcagaaaaatttcccaaacaccaaactcatttttgctcat 2033
| ||||| ||||||||||| || ||||| |||||||||||| | |||| | || ||||
Sbjct: 477 ggatccatcagcattgttagggaggaaaatctcccaaacaccataatcatctctggtcat 418
Query: 2034 acgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgctcc 2093
| |||||||||||| | ||| |||||||||||||| || |||||||||||| |||||
Sbjct: 417 agtatctgcatttgggttccaattgttgaagtcacctactaatgctgcagaatgcgctcc 358
Query: 2094 aggagcccattctcgatatgtgataccttccgcgctgcgattaaatccaaacttctcata 2153
||||||||||||||| || |||||||||| || ||||| ||||||||| ||| |||||
Sbjct: 357 aggagcccattctcggtaagtgatacctttagcactgcgggtaaatccaagcttttcata 298
Query: 2154 actacgggagaaggcttccaagcctccttcatgtt 2188
|| ||| || || ||||||| || ||||||||||
Sbjct: 297 accacgagaaaaaacttccaatccaccttcatgtt 263
>gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42B15
5-PRIME, mRNA sequence
Length = 672
Score = 634 bits (320), Expect = e-180
Identities = 575/660 (87%)
Strand = Plus / Minus
Query: 543 agatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaactcttgcat 602
||||||||| || ||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 672 agatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaactcttgcat 613
Query: 603 accatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgacatttgtcata 662
|||| |||| |||||| | |||||||| || || |||||||| || || ||||| |||||
Sbjct: 612 accacgatatctaagaaaatctgcatctccaagatcaaatctacggcggcatttatcata 553
Query: 663 actgttgttattccctggaataaacttaccacttggaagtctttgcggacctcttggaaa 722
||| |||||||| || || | || || || ||||||| |||||||||||||||||||
Sbjct: 552 actattgttatttccagggagaactttgccggttggaagagtttgcggacctcttggaaa 493
Query: 723 atctatccattcaggatgtccaaactcatttcccatgaaattaagatagccctctcctcc 782
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 492 atctatccattcaggatgcccaaactcatttcccatgaaattaagatagccttcgccacc 433
Query: 783 taaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatcaatggtagg 842
||||||||| |||| ||| || ||||| |||||||||||||| |||||||||||| |||
Sbjct: 432 taaacccatggtgacaagcctgatcattttatgtaatgctatgccacgatcaatgcgagg 373
Query: 843 agttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaaccaaaacgc 902
|||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 372 ggttgaaggtctatccagagccatgaaatcatacatatccttatccatcaaccagaatgc 313
Query: 903 aatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttacacacttctc 962
|||||||||||| || |||| |||||||||||||||||| |||||||| |||||||||||
Sbjct: 312 aatagtcttgtcaccaactagtgcttgatcatgactttctgcataagtgacacacttctc 253
Query: 963 taaccacctcctatttgtcagtgtgtgcacaatatcacccatcttccaagtttcatcact 1022
| |||||| |||||||| || |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 252 aagccaccttctatttgttagggtgtgcacaatatcgcccattttccaagattcgtcact 193
Query: 1023 ttgcttgagaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacc 1082
||||||||| || ||||||||||| || || ||||||||||||| ||||||||||||||
Sbjct: 192 ttgcttgaggagttcaatccatttatctgctacagccatatgcaggcgatagtcaaaacc 133
Query: 1083 taccccaccatcgtgaacaggaagggcaaatgtaggcattccactaacatcttcaccaat 1142
|| |||||||| | ||||| | | ||||||||||||||| || ||||||||||||||
Sbjct: 132 aacaccaccatctgggacagggatgcaaaatgtaggcattccgctgacatcttcaccaat 73
Query: 1143 ggttacagcctcaggataaagtccatgaattagatcatttaccagcatcaagtaaaccac 1202
|| |||||| || ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 72 ggatacagcatccggataaagtccatgaattagatcgttgaccagcattaagtaaaccac 13
>gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0089P20f, mRNA sequence
Length = 801
Score = 579 bits (292), Expect = e-163
Identities = 581/675 (86%), Gaps = 2/675 (0%)
Strand = Plus / Minus
Query: 500 tcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcat 559
|||||||||| |||||| ||||||| |||| ||||||||| ||||||||||| || | |
Sbjct: 674 tcaccttatcttcctcaagtttccgagaaacatactggtgctcagatgtcataaaccc-t 616
Query: 560 atttttgc-tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaaga 618
|||||| | |||||||| ||||||||||||| ||||||||||| ||| |||| ||||||
Sbjct: 615 atttttccctcaagatggggcattgcctgatcgaactcttgcattccacgatatctaaga 556
Query: 619 tagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccct 678
| |||||||| || || |||||| | || || ||||| |||||||| |||||||| ||
Sbjct: 555 aaatctgcatctccaagatcaaatttacggcggcatttatcataactattgttattgcca 496
Query: 679 ggaataaacttaccacttggaagtctttgcggacctcttggaaaatctatccattcagga 738
|| | || || || ||||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 495 gggagaactttgccggttggaagagtntgcggaccccttggaaaatctatccattcagga 436
Query: 739 tgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattgtgata 798
|| |||||||||||||||||||||||||||||||| || || ||||||||||| |||| |
Sbjct: 435 tgcccaaactcatttcccatgaaattaagatagccttcgccacctaaacccatggtgaca 376
Query: 799 agtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatcg 858
|| || ||||| |||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 375 agcctgatcattttatgtaatgctatgccacgatcaatgcgaggggttgaaggtctatcc 316
Query: 859 agggccatgaaatcatacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccg 918
|| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct: 315 agagccatgaaatcatacatatccttatccatcaaccagaatgcaatagtcttgtcacca 256
Query: 919 actaatgcttgatcatgactttcagcataagttacacacttctctaaccacctcctattt 978
|||| |||||||||||||||||| |||||||| ||||||||||| | |||||| ||||||
Sbjct: 255 actagtgcttgatcatgactttctgcataagtgacacacttctcaagccaccttctattt 196
Query: 979 gtcagtgtgtgcacaatatcacccatcttccaagtttcatcactttgcttgagaaggtca 1038
|| || |||||||||||||| ||||| ||||||| ||| |||||||||||||| || |||
Sbjct: 195 gttagggtgtgcacaatatcgcccattttccaagattcgtcactttgcttgaggagttca 136
Query: 1039 atccatttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcgtga 1098
|||||||| || || ||||||||||||| |||||||||||||| || |||||||| |
Sbjct: 135 atccatttatctgctacagccatatgcaggcgatagtcaaaaccaacaccaccatctggg 76
Query: 1099 acaggaagggcaaatgtaggcattccactaacatcttcaccaatggttacagcctcagga 1158
||||| | | ||||||||||||||| || |||||||||||||||| |||||| || |||
Sbjct: 75 acagggatgcaaaatgtaggcattccgctgacatcttcaccaatggatacagcatccgga 16
Query: 1159 taaagtccatgaatt 1173
|||||||||||||||
Sbjct: 15 taaagtccatgaatt 1
>gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0099J22f, mRNA sequence
Length = 731
Score = 563 bits (284), Expect = e-158
Identities = 607/713 (85%), Gaps = 2/713 (0%)
Strand = Plus / Minus
Query: 714 tcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagcc 773
||||||| | ||||||||||||||||| | |||||||||||||| || |||||||| ||
Sbjct: 731 tcttgganagtctatccattcaggatgccggaactcatttcccataaagttaagataacc 672
Query: 774 ctctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatc 833
||||||||||| | |||||||||||||||||||||| ||||| | |||||| || |||||
Sbjct: 671 ctctcctcctanagccattgtgataagtctaatcattttatgcagtgctattccgcgatc 612
Query: 834 aatggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaa 893
||| |||| || ||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 611 aatattaggtgtcgaaggtccgttcagagccatgaaatcatacatatccttgtccatcaa 552
Query: 894 ccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgactttcagcataagttac 953
||| || |||||||||||||| || || | ||||||||||||||||||||||||||| ||
Sbjct: 551 ccagaatgcaatagtcttgtctccaacaagtgcttgatcatgactttcagcataagtaac 492
Query: 954 acacttctctaaccacctcctatttgtcagtgtgtgcacaatatcacccatcttccaagt 1013
|||||| || |||||||| |||||||| |||||||||||||||| |||||||| ||||
Sbjct: 491 acacttttccaaccaccttctatttgttagtgtgtgcacaatattacccatctcccaacc 432
Query: 1014 ttcatcactttgcttgagaaggtcaatccatttgtcagccacagccatatgcatccgata 1073
|||||| ||| |||||||| ||||||||||| || || || |||||||| | |||||
Sbjct: 431 ttcatcgcttcctttgagaagttcaatccatttatcggcaacggccatatgtaagcgata 372
Query: 1074 gtcaaaacctaccccaccatcgtgaacaggaagggcaaatgtaggcattccactaacatc 1133
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtcaaaaccaaccccaccaacttgaacaggaagggcaaatgtaggcattccactaacatc 312
Query: 1134 ttcaccaatggttacagcctcaggataaagtccatgaattagatcatttaccagcatcaa 1193
||||||||| || || || |||||||| || | |||||||||||||| |||||||||||
Sbjct: 311 ttcaccaatagtaacggcttcaggatanagcgcgtgaattagatcattcaccagcatcaa 252
Query: 1194 gtaaaccactgcatctacatcggtggcaaagccaaaatactcattgaagttccccgtaaa 1253
|||||| |||||||||||||| ||||||||||||||||| |||| | || | || |||||
Sbjct: 251 gtaaacaactgcatctacatccgtggcaaagccaaaatattcatggtagct-cctgtaaa 193
Query: 1254 tgttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaacc 1313
| |||||||||||| ||| | || ||||||||| |||| || || || |||| ||
Sbjct: 192 -ggtacttgtaatccatggggggtatacatcatgaaggtgggcccgtcgaatgggaaccc 134
Query: 1314 atcaaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaacttc 1373
|| |||||||||||||| |||| |||||| |||||||| || |||| |||| ||||||
Sbjct: 133 atggaacttatattcctcaagcccccatctggcattggaaagtagaacccttataacttc 74
Query: 1374 ccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtg 1426
| ||||| ||||| || | |||||||||||||||||||||||||| ||||
Sbjct: 73 cttattcccgtagttgaacacacgagaatcccacatccagtgatggccccgtg 21
>gb|BU967173.1|BU967173 HB03H24r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H24
5-PRIME, mRNA sequence
Length = 625
Score = 521 bits (263), Expect = e-146
Identities = 519/609 (85%)
Strand = Plus / Minus
Query: 1435 tgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtattacttgac 1494
||||||||||||||||| || ||||||||||||||||| || |||| |||||||||||
Sbjct: 623 tgaaagtaatgtgtatccgtgccatcaaaaccattcaaaccgtccaaggtattacttgat 564
Query: 1495 gcatgactatgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatc 1554
|| ||||| ||||| |||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 563 gcgtgactgtgaacaacatccatcaggacaagcaaaccaagctcgtgagctctatcaatc 504
Query: 1555 aaagacttcaattcttctggggtaccaaaacgactacttggcgcnnnnnnnttagttaca 1614
|| || || || |||||||||| |||||||| |||||||| || || || |||
Sbjct: 503 aaggattttaaatcttctggggacccaaaacggctacttggtgcaaagaaattggtaaca 444
Query: 1615 tggtatccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattg 1674
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 443 tggtacccaaagcttccatagtatgaatgctcttggattgccattatttgaactgcattg 384
Query: 1675 tatccaagnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatc 1734
|||||||| |||||||| || || ||||| || |||||| |||||||||| |||
Sbjct: 383 tatccaagtcttttaattcttggaagcacctcatctctgaagtttgcatatgtgttgatc 324
Query: 1735 ttcggttccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgt 1794
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttggttccgggctactcatgccaacatgtgtttcatatatccgcaatgattttggtcgt 264
Query: 1795 ttaggttgcgcatgcctgaacacatactttacctcttcaggaggatcataataaatccca 1854
|||||||| | |||| |||| |||||||| ||||||||||||| |||||||| || |||
Sbjct: 263 ttaggttgaggatgcttgaatacatacttctcctcttcaggagggtcataatatattcca 204
Query: 1855 tcatatggtatttctcctggggcctgcactgagtacttgatccaggctggaattgaatcc 1914
| |||||||| |||||||| | |||||| |||||||||||||| || ||||||||||||
Sbjct: 203 ttgtatggtatatctcctggagtctgcacggagtacttgatccaagcaggaattgaatcc 144
Query: 1915 tttatccctgatggagtatccattctcacctttacacgagatccatgaggaataggtgat 1974
||| |||| |||||||||||||| | |||||| || || || ||||||||||| || |
Sbjct: 143 tttgtcccagatggagtatccatccgcaccttcacccgtgagccatgaggaattggcggc 84
Query: 1975 gtaccatctgcattgttaggcagaaaaatttcccaaacaccaaactcatttttgctcata 2034
| ||||||||||||||| ||||||||||| ||||||| ||| || |||||||||||||||
Sbjct: 83 gaaccatctgcattgtttggcagaaaaatctcccaaatacccaagtcatttttgctcata 24
Query: 2035 cgatctgca 2043
| ||||||
Sbjct: 23 tggtctgca 15
>gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022L05f, mRNA sequence
Length = 825
Score = 494 bits (249), Expect = e-138
Identities = 483/561 (86%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 588 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 529
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 528 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 469
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 468 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 409
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 408 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 349
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 348 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 289
Query: 654 tttgtcataactgttgttattccctggaataaacttaccacttggaagtctttgcggacc 713
||| |||||||| |||||||| || || | || || || ||||||| ||||||||||
Sbjct: 288 tttatcataactattgttattgccagggagaactttgccggttggaagagtttgcggacc 229
Query: 714 tcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagcc 773
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 228 ccttggaaaatctatccattcaggatgcccaaactcatttcccatgaaattaagatagcc 169
Query: 774 ctctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatc 833
|| || ||||||||||| |||| ||| || ||||| |||||||||||||| ||||||||
Sbjct: 168 ttcgccacctaaacccatggtgacaagcctgatcattttatgtaatgctatgccacgatc 109
Query: 834 aatggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaa 893
|||| ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 108 aatgcgaggggttgaaggtctatccagagccatgaaatcatacatatccttatccatcaa 49
Query: 894 ccaaaacgcaatagtcttgtc 914
||| || ||||||||||||||
Sbjct: 48 ccagaatgcaatagtcttgtc 28
>gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5o11 5', mRNA sequence
Length = 471
Score = 464 bits (234), Expect = e-129
Identities = 410/469 (87%)
Strand = Plus / Minus
Query: 512 cctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaa 571
||||||||||||| |||| ||||||||| ||||||||||| || ||||||||| |||||
Sbjct: 471 cctcatgtttccgagaaacatactggtgctcagatgtcataaacccatatttttcctcaa 412
Query: 572 gatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcac 631
|||| |||||||||||||| ||||||||||||||| |||| |||||| | |||||||| |
Sbjct: 411 gatgctgcattgcctgatcgaactcttgcataccacgatatctaagaaaatctgcatctc 352
Query: 632 ccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaacttac 691
| || |||||||| || || ||||| |||||||| |||||||| || || | || || |
Sbjct: 351 caagatcaaatctacggcggcatttatcataactattgttatttccagggagaactttgc 292
Query: 692 cacttggaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaactcat 751
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 291 cggttggaagagtttgcggacctcttggaaaatctatccattcaggatgcccaaactcat 232
Query: 752 ttcccatgaaattaagatagccctctcctcctaaacccattgtgataagtctaatcatct 811
|||||||||||||||||||||| || || ||||||||||| |||| ||| || ||||| |
Sbjct: 231 ttcccatgaaattaagatagccttcgccacctaaacccatggtgacaagcctgatcattt 172
Query: 812 tatgtaatgctatcccacgatcaatggtaggagttgaaggtctatcgagggccatgaaat 871
||||||||||||| |||||||||||| ||| |||||||||||||| || ||||||||||
Sbjct: 171 tatgtaatgctatgccacgatcaatgcgaggggttgaaggtctatccagagccatgaaat 112
Query: 872 catacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgat 931
||||||||||||| ||||||||||| || |||||||||||||| || ||| ||||||||
Sbjct: 111 catacatatccttatccatcaaccagaatgcaatagtcttgtcaccanctagtgcttgat 52
Query: 932 catgactttcagcataagttacacacttctctaaccacctcctatttgt 980
|||||||||| |||||||| ||||||||||| | |||||| ||||||||
Sbjct: 51 catgactttctgcataagtgacacacttctcaagccaccttctatttgt 3
>gb|BU967331.1|BU967331 HB03P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB03P08
5-PRIME, mRNA sequence
Length = 537
Score = 428 bits (216), Expect = e-118
Identities = 447/524 (85%)
Strand = Plus / Minus
Query: 994 atatcacccatcttccaagtttcatcactttgcttgagaaggtcaatccatttgtcagcc 1053
||||| ||||| ||||||| ||| |||||||||||||| || ||||||||||| || ||
Sbjct: 537 atatcgcccattttccaagattcgtcactttgcttgaggagttcaatccatttatctgct 478
Query: 1054 acagccatatgcatccgatagtcaaaacctaccccaccatcgtgaacaggaagggcaaat 1113
||||||||||||| |||||||||||||| || |||||||| | ||||| | | ||||
Sbjct: 477 acagccatatgcaggcgatagtcaaaaccaacaccaccatctgggacagggatgcaaaat 418
Query: 1114 gtaggcattccactaacatcttcaccaatggttacagcctcaggataaagtccatgaatt 1173
||||||||||| || |||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 417 gtaggcattccgctgacatcttcaccaatggatacagcatccggataaagtccatgaatt 358
Query: 1174 agatcatttaccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatac 1233
||||| || |||||||| ||||||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 357 agatcgttgaccagcattaagtaaaccaccgcatcaacatcagtggcgaatccaaaatac 298
Query: 1234 tcattgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatcatggaggtc 1293
|| ||||||| |||||||| | ||||||||| |||||||| ||||||||||| |||
Sbjct: 297 tcgccatagttcccagtaaatgtcatttgtaatccatggtgagtatacatcatggaagtc 238
Query: 1294 acaccatcaaaacggaaaccatcaaacttatattcctcgagccaccatctagcattggag 1353
|| |||||||| || || ||||||||||||||||| || ||||||||||| || || ||
Sbjct: 237 accccatcaaatcgaaatccatcaaacttatattcttcaagccaccatctcgcgtttgac 178
Query: 1354 agaagaaatcttaaaacttcccagttcccatagttaaataggcgagaatcccacatccag 1413
|| | |||||||| |||||||| |||||||||| || || |||||||||||||||||
Sbjct: 177 agtaagaatcttaatacttcccaactcccatagttgaacagacgagaatcccacatccaa 118
Query: 1414 tgatggccacgtggaccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaac 1473
||||||||||||||||||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct: 117 tgatggccacgtggaccaccgtggaagtaatgtgtatcagtgccatcgaaaccattcaaa 58
Query: 1474 ccatccagagtattacttgacgcatgactatgaaccacatccat 1517
|| || || |||||| |||||| |||||||||||| | ||||||
Sbjct: 57 ccgtcaagggtattatttgacgaatgactatgaacaatatccat 14
>gb|BU972445.1|BU972445 HB21K16r BC Hordeum vulgare subsp. vulgare cDNA clone HB21K16
5-PRIME, mRNA sequence
Length = 476
Score = 410 bits (207), Expect = e-112
Identities = 387/447 (86%)
Strand = Plus / Minus
Query: 1110 aaatgtaggcattccactaacatcttcaccaatggttacagcctcaggataaagtccatg 1169
||||||||||||||| || |||||||||||||||| |||||| || ||||||||||||||
Sbjct: 460 aaatgtaggcattccgctgacatcttcaccaatggatacagcatccggataaagtccatg 401
Query: 1170 aattagatcatttaccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaa 1229
||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| || |||||
Sbjct: 400 aattagatcgttgaccagcattaagtaaaccaccgcatcaacatcagtggcgaatccaaa 341
Query: 1230 atactcattgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatcatgga 1289
|||||| ||||||| |||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 340 atactcgccatagttcccagtaaatgtcatttgtaatccatggtgagtatacatcatgga 281
Query: 1290 ggtcacaccatcaaaacggaaaccatcaaacttatattcctcgagccaccatctagcatt 1349
||||| |||||||| || || ||||||||||||||||| || ||||||||||| || ||
Sbjct: 280 agtcaccccatcaaatcgaaatccatcaaacttatattcttcaagccaccatctcgcgtt 221
Query: 1350 ggagagaagaaatcttaaaacttcccagttcccatagttaaataggcgagaatcccacat 1409
|| || | |||||||| |||||||| |||||||||| || || ||||||||||||||
Sbjct: 220 tgacagtaagaatcttaatacttcccaactcccatagttgaacagacgagaatcccacat 161
Query: 1410 ccagtgatggccacgtggaccactgtgaaagtaatgtgtatctgtaccatcaaaaccatt 1469
||| ||||||||||||||||||| ||| |||||||||||||| || ||||| ||||||||
Sbjct: 160 ccaatgatggccacgtggaccaccgtggaagtaatgtgtatcagtgccatcgaaaccatt 101
Query: 1470 caacccatccagagtattacttgacgcatgactatgaaccacatccatgagaactagcaa 1529
||| || || || |||||| |||||| |||||||||||| | |||||| ||||| |||||
Sbjct: 100 caaaccgtcaagggtattatttgacgaatgactatgaacaatatccataagaacaagcaa 41
Query: 1530 accaagctcatgtgctctatcaatcaa 1556
||||||||||||||||||||| |||||
Sbjct: 40 accaagctcatgtgctctatcgatcaa 14
>gb|BU986646.1|BU986646 HF12I02r HF Hordeum vulgare subsp. vulgare cDNA clone HF12I02
5-PRIME, mRNA sequence
Length = 623
Score = 410 bits (207), Expect = e-112
Identities = 502/605 (82%)
Strand = Plus / Minus
Query: 1360 aatcttaaaacttcccagttcccatagttaaataggcgagaatcccacatccagtgatgg 1419
|||||||| |||||||| |||||||||| || || ||||||||||||||||| ||||||
Sbjct: 605 aatcttaatacttcccaactcccatagttgaacagacgagaatcccacatccaatgatgg 546
Query: 1420 ccacgtggaccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccatcc 1479
||||||||||||| ||| |||||||||||||| || ||||| ||||||||||| || ||
Sbjct: 545 ccacgtggaccaccgtggaagtaatgtgtatcagtgccatcgaaaccattcaaaccgtca 486
Query: 1480 agagtattacttgacgcatgactatgaaccacatccatgagaactagcaaaccaagctca 1539
|| |||||| |||||| |||||||||||| | |||||| ||||| |||||||||||||||
Sbjct: 485 agggtattatttgacgaatgactatgaacaatatccataagaacaagcaaaccaagctca 426
Query: 1540 tgtgctctatcaatcaaagacttcaattcttctggggtaccaaaacgactacttggcgcn 1599
||||||||||| ||||| || || || || ||||| || |||||||| |||||||| ||
Sbjct: 425 tgtgctctatcgatcaaggattttaagtcctctggagttccaaaacggctacttggtgca 366
Query: 1600 nnnnnnttagttacatggtatccaaagcttccataatatgagtgctcttggattgccatt 1659
||||| |||||||| |||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 365 aaaaaattagtaacatggtacccaaagctcgcatagtatgaatgctcctggattgccatt 306
Query: 1660 atttgcactgcattgtatccaagnnnnnnnattcttgggaggacttcatccctaaagttt 1719
|| |||||||||||||||||||| |||||||| || || ||||||||||| ||
Sbjct: 305 atctgcactgcattgtatccaagccttttaattcttggcagcacctcatccctaaaatta 246
Query: 1720 acatatgtgtttatcttcggttccgggctactcattccgacatgtgtttcatatatccgc 1779
|||||| |||||||||||||||||||| |||||||| | |||| |||||||||||
Sbjct: 245 gcatatgaatttatcttcggttccgggctgctcattccaatgtgtgattcatatatcctt 186
Query: 1780 aatgattttggtcgtttaggttgcgcatgcctgaacacatactttacctcttcaggagga 1839
| ||| | ||||||||||||||| | ||| ||| |||||||| |||||||||| |||
Sbjct: 185 agtgactctggtcgtttaggttgaggatgttggaagacatacttctcctcttcaggtgga 126
Query: 1840 tcataataaatcccatcatatggtatttctcctggggcctgcactgagtacttgatccag 1899
|||||||| || |||| |||||||||| ||||| |||||||| ||| ||||||||||
Sbjct: 125 tcataatatatgccattgaatggtatttcacctggagcctgcacagagaacttgatccaa 66
Query: 1900 gctggaattgaatcctttatccctgatggagtatccattctcacctttacacgagatcca 1959
|| | |||||||||||| | || |||||||||||||| | | ||||||||| || |||
Sbjct: 65 gcagaaattgaatccttcacaccagatggagtatccatccgtatctttacacgtgagcca 6
Query: 1960 tgagg 1964
|||||
Sbjct: 5 tgagg 1
>gb|CB881353.1|CB881353 HM09I19w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I19
3-PRIME, mRNA sequence
Length = 639
Score = 345 bits (174), Expect = 5e-093
Identities = 351/410 (85%)
Strand = Plus / Plus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| | | |||||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 230 gtgaagtgctctccagtgtgatggatcctaccaaatccaccaaagagtccagcgtctgag 289
Query: 388 tccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctg 447
|| || |||||||| ||| |||||||||| ||||| | |||||||| ||||||||
Sbjct: 290 tctaacaccaccttgtacttcccaggctttaagcaaccgacccggtagtcgaaatagcta 349
Query: 448 ttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctta 507
|| | |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 350 ttactccagtggaagttgaacacaaataccaagtcccctttttcaaacacgatcacctta 409
Query: 508 tcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgc 567
|| ||||| |||||||| || | |||||||| || |||||||| || ||||||||| |
Sbjct: 410 tcttcctcgtgtttccgagatacgtactggtggtctgatgtcataaagccatatttttcc 469
Query: 568 tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgca 627
|||||||| ||||||||||||||||| | ||||||||||||||||| ||| | ||||||
Sbjct: 470 tcaagatgctgcattgcctgatcaaattgctgcataccatgatacctgagaaattctgca 529
Query: 628 tcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaac 687
||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||
Sbjct: 530 tcacccaggtcaaatcttcgacggcatttgtcgtaactgttgttatttcctgggatgaac 589
Query: 688 ttaccacttggaagtctttgcggacctcttggaaaatctatccattcagg 737
|||||| |||||||| ||| || ||||||||||| ||||||||||||||
Sbjct: 590 ttaccagttggaagtacttgtgggcctcttggaaagtctatccattcagg 639
>gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091D22f, mRNA sequence
Length = 832
Score = 331 bits (167), Expect = 7e-089
Identities = 311/359 (86%)
Strand = Plus / Minus
Query: 499 atcaccttatcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattca 558
||||||||||| |||||||||||||| | || ||||||||| ||||||||||| || ||
Sbjct: 363 atcaccttatcttcctcatgtttccgagtaacatactggtgctcagatgtcataaaccca 304
Query: 559 tatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaaga 618
||||||| ||||||||| |||||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 303 tatttttcctcaagatgctgcattgcctgatcgaactcttgcataccacgatatctaaga 244
Query: 619 tagtctgcatcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccct 678
| |||||||| || || |||||||| || || ||||| |||||||| |||||||| ||
Sbjct: 243 aaatctgcatctccaagatcaaatctacggcggcatttatcataactattgttattgcca 184
Query: 679 ggaataaacttaccacttggaagtctttgcggacctcttggaaaatctatccattcagga 738
|| | || || || ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 183 gggagaactttgccggttggaagagtttgcggaccccttggaaaatctatccattcagga 124
Query: 739 tgtccaaactcatttcccatgaaattaagatagccctctcctcctaaacccattgtgata 798
|| |||||||||||||||||||||||||||||||| || || ||||||||||| |||| |
Sbjct: 123 tgcccaaactcatttcccatgaaattaagatagccttcgccacctaaacccatggtgaca 64
Query: 799 agtctaatcatcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatc 857
|| || ||||| |||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 63 agcctgatcattttatgtaatgctatgccacgatcaatgcgaggggttgaaggtctatc 5
>gb|BU995206.1|BU995206 HM09I19r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I19
5-PRIME, mRNA sequence
Length = 610
Score = 329 bits (166), Expect = 3e-088
Identities = 350/410 (85%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| | | |||||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 412 gtgaagtgctctccagtgtgatggatcctaccaaatccaccaaagagtccagcgtctgag 353
Query: 388 tccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctg 447
|| || |||||||| ||| |||||||||| ||||| | |||||||| ||||||||
Sbjct: 352 tctaacaccaccttgtacttcccaggctttaagcaaccgacccggtagtcgaaatagcta 293
Query: 448 ttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctta 507
|| | |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 292 ttactccagtggaagttgaacacaaataccaagtcccctttttcaaacacgatcacctta 233
Query: 508 tcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgc 567
|| ||||| |||||||| || | |||||||| || |||||||| || ||||||||| |
Sbjct: 232 tcttcctcgtgtttccgagatacgtactggtggtctgatgtcataaagccatatttttcc 173
Query: 568 tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgca 627
|||||||| ||||||||||||||||| | ||||||||||||||||| ||| | ||||||
Sbjct: 172 tcaagatgctgcattgcctgatcaaattgctgcataccatgatacctgagaaattctgca 113
Query: 628 tcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaac 687
||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||
Sbjct: 112 tcacccaggtcaaatcttcgacggcatttgtcgtaactgttgttatttcctgggatgaac 53
Query: 688 ttaccacttggaagtctttgcggacctcttggaaaatctatccattcagg 737
|||||| |||||||| ||| || |||| |||||| ||||||||||||||
Sbjct: 52 ttaccagttggaagtacttgtgggcctc-tggaaagtctatccattcagg 4
>gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL54e11 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 612
Score = 317 bits (160), Expect = 1e-084
Identities = 343/404 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 404 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 345
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 344 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 285
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 284 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 225
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 224 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 165
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 164 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 105
Query: 654 tttgtcataactgttgttattccctggaataaacttaccacttggaagtctttgcggacc 713
||| |||||||| |||||||| || || | || || || ||||||| ||||||||||
Sbjct: 104 tttatcataactattgttattgccagggagaactttgccggttggaagagtttgcggacc 45
Query: 714 tcttggaaaatctatccattcaggatgtccaaactcatttccca 757
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44 ccttggaaaatctatccattcaggatgcccaaactcatttccca 1
>gb|BU966891.1|BU966891 HB02K24r BC Hordeum vulgare subsp. vulgare cDNA clone HB02K24
5-PRIME, mRNA sequence
Length = 550
Score = 315 bits (159), Expect = 4e-084
Identities = 437/532 (82%)
Strand = Plus / Minus
Query: 1612 acatggtatccaaagcttccataatatgagtgctcttggattgccattatttgcactgca 1671
|||||||| |||||||| |||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 547 acatggtacccaaagctcgcatagtatgaatgctcctggattgccattatctgcactgca 488
Query: 1672 ttgtatccaagnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgttt 1731
||||||||||| |||||||| || || ||||||||||| || |||||| |||
Sbjct: 487 ttgtatccaagccttttaattcttggcagcacctcatccctaaaattagcatatgaattt 428
Query: 1732 atcttcggttccgggctactcattccgacatgtgtttcatatatccgcaatgattttggt 1791
||||||||||||||||| |||||||| | |||| ||||||||||| | ||| | ||||
Sbjct: 427 atcttcggttccgggctgctcattccaatgtgtgattcatatatccttagtgactctggt 368
Query: 1792 cgtttaggttgcgcatgcctgaacacatactttacctcttcaggaggatcataataaatc 1851
||||||||||| | ||| ||| |||||||| |||||||||| ||||||||||| ||
Sbjct: 367 cgtttaggttgaggatgttggaagacatacttctcctcttcaggtggatcataatatatg 308
Query: 1852 ccatcatatggtatttctcctggggcctgcactgagtacttgatccaggctggaattgaa 1911
|||| |||||||||| ||||| |||||||| ||| |||||||||| || | |||||||
Sbjct: 307 ccattgaatggtatttcacctggagcctgcacagagaacttgatccaagcagaaattgaa 248
Query: 1912 tcctttatccctgatggagtatccattctcacctttacacgagatccatgaggaataggt 1971
||||| | || |||||||||||||| | | ||||||||| || |||||||||||||
Sbjct: 247 tccttcacaccagatggagtatccatccgtatctttacacgtgagccatgaggaatagca 188
Query: 1972 gatgtaccatctgcattgttaggcagaaaaatttcccaaacaccaaactcatttttgctc 2031
| | ||||| ||||||||||| || ||||| |||||||||||| | |||| | || ||
Sbjct: 187 ggggatccatcagcattgttagggaggaaaatctcccaaacaccataatcatctctggtc 128
Query: 2032 atacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgct 2091
||| |||||||||||| | ||| |||||||||||||| || |||||||||||| |||
Sbjct: 127 atagtatctgcatttgggttccaattgttgaagtcacctactaatgctgcagaatgcgct 68
Query: 2092 ccaggagcccattctcgatatgtgataccttccgcgctgcgattaaatccaa 2143
||||||||||||||||| || |||||||||| || ||||| |||||||||
Sbjct: 67 ccaggagcccattctcggtaagtgatacctttagcactgcgggtaaatccaa 16
>gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H03
5-PRIME, mRNA sequence
Length = 647
Score = 309 bits (156), Expect = 3e-082
Identities = 343/404 (84%), Gaps = 1/404 (0%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 404 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 345
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 344 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 285
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 284 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 225
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 224 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 165
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 164 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 105
Query: 654 tttgtcataactgttgttattccctggaataaacttaccacttggaagtctttgcggacc 713
||| |||||||| |||||||| || || | || || || ||||||| ||||||||||
Sbjct: 104 tttatcataactattgttatttccagggagaactttgccggttggaagagtttgcggacc 45
Query: 714 tcttggaaaatctatccattcaggatgtccaaactcatttccca 757
|| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44 tc-tggaaaatctatccattcaggatgcccaaactcatttccca 2
>gb|CB880027.1|CB880027 HM05E08w HM Hordeum vulgare subsp. vulgare cDNA clone HM05E08
3-PRIME, mRNA sequence
Length = 625
Score = 309 bits (156), Expect = 3e-082
Identities = 337/396 (85%), Gaps = 1/396 (0%)
Strand = Plus / Plus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| | | |||||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 229 gtgaagtgctctccagtgtgatggatcctaccaaatccaccaaagagtccagcgtctgag 288
Query: 388 tccaagaccaccttatacaccccaggctttcga-caaccaatacggtagtcaaaatagct 446
|| || |||||||| ||| ||||||||| | ||||| | |||||||| ||||||||
Sbjct: 289 tctaacaccaccttgtacttcccaggcttctaagcaaccgacccggtagtcgaaatagct 348
Query: 447 gttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctt 506
|| | |||||||||||||||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 349 attactccagtggaagttgaacacaaataccaagtcccctttttcaaacacgatcacctt 408
Query: 507 atcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttg 566
||| ||||| |||||||| || | |||||||| || |||||||| || |||||||||
Sbjct: 409 atcttcctcgtgtttccgagatacgtactggtggtctgatgtcataaagccatatttttc 468
Query: 567 ctcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgc 626
||||||||| ||||||||||||||||| | ||||||||||||||||| ||| | |||||
Sbjct: 469 ctcaagatgctgcattgcctgatcaaattgctgcataccatgatacctgagaaattctgc 528
Query: 627 atcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaa 686
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 529 atcacccaggtcaaatcttcgacggcatttgtcgtaactgttgttatttcctgggatgaa 588
Query: 687 cttaccacttggaagtctttgcggacctcttggaaa 722
||||||| |||||||| ||| || |||||||||||
Sbjct: 589 cttaccagttggaagtacttgtgggcctcttggaaa 624
>gb|BU970967.1|BU970967 HB16D15r BC Hordeum vulgare subsp. vulgare cDNA clone HB16D15
5-PRIME, mRNA sequence
Length = 411
Score = 307 bits (155), Expect = 1e-081
Identities = 332/391 (84%)
Strand = Plus / Minus
Query: 1000 cccatcttccaagtttcatcactttgcttgagaaggtcaatccatttgtcagccacagcc 1059
||||| ||||||| ||| |||||||||||||| || ||||||||||| || || ||||||
Sbjct: 409 cccattttccaagattcgtcactttgcttgaggagttcaatccatttatctgctacagcc 350
Query: 1060 atatgcatccgatagtcaaaacctaccccaccatcgtgaacaggaagggcaaatgtaggc 1119
||||||| |||||||||||||| || |||||||| | ||||| | | ||||||||||
Sbjct: 349 atatgcaggcgatagtcaaaaccaacaccaccatctgggacagggatgcaaaatgtaggc 290
Query: 1120 attccactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatca 1179
||||| || |||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 289 attccgctgacatcttcaccaatggatacagcatccggataaagtccatgaattagatcg 230
Query: 1180 tttaccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattg 1239
|| |||||||| ||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 229 ttgaccagcattaagtaaaccaccgcatcaacatcagtggcgaatccaaaatactcgcca 170
Query: 1240 aagttccccgtaaatgttacttgtaatccgtggtgagtgtacatcatggaggtcacacca 1299
||||||| |||||||| | ||||||||| |||||||| ||||||||||| ||||| |||
Sbjct: 169 tagttcccagtaaatgtcatttgtaatccatggtgagtatacatcatggaagtcacccca 110
Query: 1300 tcaaaacggaaaccatcaaacttatattcctcgagccaccatctagcattggagagaaga 1359
||||| || || ||||||||||||||||| || ||||||||||| || || || || |
Sbjct: 109 tcaaatcgaaatccatcaaacttatattcttcaagccaccatctcgcgtttgacagtaag 50
Query: 1360 aatcttaaaacttcccagttcccatagttaa 1390
|||||||| |||||||| ||||||||||||
Sbjct: 49 aatcttaatacttcccaactcccatagttaa 19
>gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091D24f, mRNA sequence
Length = 918
Score = 305 bits (154), Expect = 4e-081
Identities = 346/410 (84%)
Strand = Plus / Minus
Query: 448 ttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctta 507
||||| ||||||||||||| ||||| | ||||||| ||||||| | |||||||||
Sbjct: 410 ttgttccagtggaagttgacaacaaaactcgaatctcctctttcgaatatgatcacctta 351
Query: 508 tcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgc 567
|| |||||||||||||| | || ||| ||||| ||||||||||| || ||||||||| |
Sbjct: 350 tcttcctcatgtttccgaggaacatattggtgctcagatgtcataaacccatatttttcc 291
Query: 568 tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgca 627
|||||||| ||||||||||||| ||||||||||||||| |||| ||||| | ||||||
Sbjct: 290 tcaagatgctgcattgcctgatagaactcttgcataccacgatatttaagaaaatctgca 231
Query: 628 tcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaac 687
|| || || |||||| | || || ||||| |||||||| |||||||| || || | ||
Sbjct: 230 tctccaagatcaaatttacggcggcatttatcataactattgttattgccagggagaact 171
Query: 688 ttaccacttggaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaac 747
|| || ||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 170 ttgccggttggaagagtttgcggaccccttggaaaatctatccattcaggatgcccaaac 111
Query: 748 tcatttcccatgaaattaagatagccctctcctcctaaacccattgtgataagtctaatc 807
|||||||||||||||||||||||||| || || ||||||||||| |||| ||| || |||
Sbjct: 110 tcatttcccatgaaattaagatagccttcgccacctaaacccatggtgacaagcctgatc 51
Query: 808 atcttatgtaatgctatcccacgatcaatggtaggagttgaaggtctatc 857
|| |||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct: 50 attttatgtaatgctatgccacgatcaatgcgaggggttgaaggtctatc 1
>gb|BU994498.1|BU994498 HM07E08r HM Hordeum vulgare subsp. vulgare cDNA clone HM07E08
5-PRIME, mRNA sequence
Length = 630
Score = 305 bits (154), Expect = 4e-081
Identities = 349/410 (85%), Gaps = 3/410 (0%)
Strand = Plus / Minus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| | | |||||||||||| | |||||||||||| ||||||||||| |||
Sbjct: 410 gtgaagtgctctccagtgtgatggatcctaccaaatccaccaaagagtccagcgtctgag 351
Query: 388 tccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctg 447
|| || |||||||| | | |||||||||| ||||| | |||||||| ||||||||
Sbjct: 350 tctaacaccaccttgt-cttcccaggctttaagcaaccgacccggtagtcgaaatagcta 292
Query: 448 ttgttgcagtggaagttgaacacaaataccaaatctcccttttcgaacacaatcacctta 507
|| | |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 291 ttactccagtggaagttgaacacaaataccaagtcccctttttcaaacacgatcacctta 232
Query: 508 tcctcctcatgtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgc 567
|| ||||| |||||||| || | |||||||| || |||||||| || ||||||||| |
Sbjct: 231 tcttcctcgtgtttccgagatacgtactggtggtctgatgtcataaagccatatttttcc 172
Query: 568 tcaagatgttgcattgcctgatcaaactcttgcataccatgatacctaagatagtctgca 627
|||||||| ||||||||||||||||| | ||||||||||||||||| ||| | ||||||
Sbjct: 171 tcaagatgctgcattgcctgatcaaattgctgcataccatgatacctgagaaattctgca 112
Query: 628 tcacccaggtcaaatcttcgacgacatttgtcataactgttgttattccctggaataaac 687
||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||
Sbjct: 111 tcacccaggtcaaatcttcgacggcatttgtcgtaactgttgttatttcctgggatgaac 52
Query: 688 ttaccacttggaagtctttgcggacctcttggaaaatctatccattcagg 737
|||||| |||||||| ||| || |||| |||||| ||||||||||||||
Sbjct: 51 ttaccagttggaagtacttg-gggcctc-tggaaagtctatccattcagg 4
>gb|BI948738.1|BI948738 HVSMEl0010K17f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0010K17f, mRNA sequence
Length = 820
Score = 291 bits (147), Expect = 6e-077
Identities = 319/375 (85%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 805 atcatcttatgtaatgctatcccacg-atcaatggtaggagttgaaggtctatcgagggc 863
|||||||||||| ||||||| ||||| ||||||| ||| || |||||| |||| || ||
Sbjct: 378 atcatcttatgtgatgctatgccacgtatcaatgcaaggggtggaaggtttatccagagc 319
Query: 864 catgaaatcatacatatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaa 923
||| | | | |||||||||| ||||||||||| || |||||||||||||| || ||||
Sbjct: 318 tatggattgagacatatccttatccatcaaccagaatgcaatagtcttgtcaccaactag 259
Query: 924 tgcttgatcatgactttcagcataagttacacacttctctaaccacctcctatttgtcag 983
|| ||||||||||||||| |||||||| ||||||||||| | |||||| |||||||| ||
Sbjct: 258 tgattgatcatgactttctgcataagtgacacacttctcaagccaccttctatttgttag 199
Query: 984 tgtgtgcacaatatcacccatcttccaagtttcatcactttgcttgagaaggtcaatcca 1043
|||||||||||||| ||||| ||||||| || ||||||||||||| || ||||||||
Sbjct: 198 ggtgtgcacaatatcgcccattttccaagactccccactttgcttgaggagttcaatcca 139
Query: 1044 tttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcgtgaacagg 1103
||| || || ||||||||||||| |||||||||||||| || |||||||| | |||||
Sbjct: 138 tttatctgctacagccatatgcaggcgatagtcaaaaccaacaccaccatctgggacagg 79
Query: 1104 aagggcaaatgtaggcattccactaacatcttcaccaatggttacagcctcaggataaag 1163
| | ||||||||||||||| || |||||||||||||||| |||||| || ||||||||
Sbjct: 78 gatgcaaaatgtaggcattccgctgacatcttcaccaatggatacagcatccggataaag 19
Query: 1164 tccatgaattagatc 1178
|||||||||||||||
Sbjct: 18 tccatgaattagatc 4
>gb|BG366889.2|BG366889 HVSMEi0008N13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008N13f, mRNA sequence
Length = 506
Score = 274 bits (138), Expect = 1e-071
Identities = 320/381 (83%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 381 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 322
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 321 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 262
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
||||| |||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 261 taccanatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 202
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 201 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 142
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 141 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 82
Query: 654 tttgtcataactgttgttattccctggaataaacttaccacttggaagtctttgcggacc 713
||| |||||||| |||||||| || || | || || || ||||||| ||||||||||
Sbjct: 81 tttatcataactattgttattgccagggagaactttgccggttggaagagtttgcggacc 22
Query: 714 tcttggaaaatctatccattc 734
||||||||||||||||||||
Sbjct: 21 ccttggaaaatctatccattc 1
>gb|AV913706.1|AV913706 AV913706 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a09 5', mRNA sequence
Length = 556
Score = 270 bits (136), Expect = 2e-070
Identities = 397/484 (82%)
Strand = Plus / Minus
Query: 1705 tcatccctaaagtttacatatgtgtttatcttcggttccgggctactcattccgacatgt 1764
||||||||||| || |||||| |||||||||||||||||||| |||||||| | |||
Sbjct: 548 tcatccctaaaattagcatatgaatttatcttcggttccgggctgctcattccaatgtgt 489
Query: 1765 gtttcatatatccgcaatgattttggtcgtttaggttgcgcatgcctgaacacatacttt 1824
| ||||||||||| | ||| | ||||||||||||||| | ||| ||| ||||||||
Sbjct: 488 gattcatatatccttagtgactctggtcgtttaggttgaggatgttggaagacatacttc 429
Query: 1825 acctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcact 1884
|||||||||| ||||||||||| || |||| |||||||||| ||||| ||||||||
Sbjct: 428 tcctcttcaggtggatcataatatatgccattgaatggtatttcacctggagcctgcaca 369
Query: 1885 gagtacttgatccaggctggaattgaatcctttatccctgatggagtatccattctcacc 1944
||| |||||||||| || | |||||||||||| | || |||||||||||||| | | |
Sbjct: 368 gagaacttgatccaagcagaaattgaatccttcacaccagatggagtatccatccgtatc 309
Query: 1945 tttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaaatt 2004
|||||||| || ||||||||||||| | | ||||| ||||||||||| || |||||
Sbjct: 308 tttacacgtgagccatgaggaatagcaggggatccatcagcattgttagggaggaaaatc 249
Query: 2005 tcccaaacaccaaactcatttttgctcatacgatctgcatttggatcccagttgttgaag 2064
|||||||||||| | |||| | || ||||| |||||||||||| | ||| |||||||||
Sbjct: 248 tcccaaacaccataatcatctctggtcatagtatctgcatttgggttccaattgttgaag 189
Query: 2065 tcacccaccaatgctgcagaaaatgctccaggagcccattctcgatatgtgataccttcc 2124
||||| || |||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 188 tcacctactaatgctgcagaatgcgctccaggagcccattctcggtaagtgataccttta 129
Query: 2125 gcgctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttca 2184
|| ||||| ||||||||| ||| ||||||| ||| || || ||||||| || ||||||
Sbjct: 128 gcactgcgggtaaatccaagcttttcataaccacgagaaaaaacttccaatccaccttca 69
Query: 2185 tgtt 2188
||||
Sbjct: 68 tgtt 65
>gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL53d1 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 587
Score = 264 bits (133), Expect = 1e-068
Identities = 256/297 (86%)
Strand = Plus / Minus
Query: 461 agttgaacacaaataccaaatctcccttttcgaacacaatcaccttatcctcctcatgtt 520
||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||||||||
Sbjct: 297 agttgaaaacaaataccaaatctcctctttcgaagatgatcaccttatcttcctcatgtt 238
Query: 521 tccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttgca 580
|||| |||| ||||||||| ||||||||||| || ||||||||| ||||||||| ||||
Sbjct: 237 tccgagaaacatactggtgctcagatgtcataaacccatatttttcctcaagatgctgca 178
Query: 581 ttgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtcaa 640
|||||||||| ||||||||||||||| |||| |||||| | |||||||| || || ||||
Sbjct: 177 ttgcctgatcgaactcttgcataccacgatatctaagaaaatctgcatctccaagatcaa 118
Query: 641 atcttcgacgacatttgtcataactgttgttattccctggaataaacttaccacttggaa 700
|||| || || ||||| |||||||| |||||||| || || | || || || ||||||
Sbjct: 117 atctacggcggcatttatcataactattgttattgccagggagaactttgccggttggaa 58
Query: 701 gtctttgcggacctcttggaaaatctatccattcaggatgtccaaactcatttccca 757
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 57 gagtttgcggaccccttggaaaatctatccattcaggatgcccaaactcatttccca 1
>gb|BQ755138.1|BQ755138 EBed02_SQ003_N09_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_N09 5', mRNA sequence
Length = 658
Score = 256 bits (129), Expect = 3e-066
Identities = 273/321 (85%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 345 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 286
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 285 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 226
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 225 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 166
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 165 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 106
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| || || |||||||| || || ||
Sbjct: 105 ctcttgcataccacgatatctaagaaaatctgcatctccaagatcaaatctacggcggca 46
Query: 654 tttgtcataactgttgttatt 674
||| |||||||| ||||||||
Sbjct: 45 tttatcataactattgttatt 25
>gb|AV921312.1|AV921312 AV921312 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a09 3', mRNA sequence
Length = 692
Score = 240 bits (121), Expect = 2e-061
Identities = 264/312 (84%)
Strand = Plus / Plus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 379 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 438
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 439 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 498
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 499 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 558
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 559 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 618
Query: 594 ctcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatcttcgacgaca 653
||||||||||||| |||| |||||| | |||||||| | || |||||||| || || ||
Sbjct: 619 ctcttgcataccacgatatctaagaaaatctgcatctncaagatcaaatctacggcggca 678
Query: 654 tttgtcataact 665
||| ||||||||
Sbjct: 679 tttatcataact 690
>gb|BU996927.1|BU996927 HI06F01r HI Hordeum vulgare subsp. vulgare cDNA clone HI06F01
5-PRIME, mRNA sequence
Length = 517
Score = 232 bits (117), Expect = 5e-059
Identities = 363/445 (81%)
Strand = Plus / Minus
Query: 1744 gggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggttgc 1803
||||| |||||||| | |||| ||||||||||| | ||| | |||||||||||||||
Sbjct: 517 gggctgctcattccaatgtgtgattcatatatccttagtgactctggtcgtttaggttga 458
Query: 1804 gcatgcctgaacacatactttacctcttcaggaggatcataataaatcccatcatatggt 1863
| ||| ||| |||||||| |||||||||| ||||||||||| || |||| |||||
Sbjct: 457 ggatgttggaagacatacttctcctcttcaggtggatcataatatatgccattgaatggt 398
Query: 1864 atttctcctggggcctgcactgagtacttgatccaggctggaattgaatcctttatccct 1923
||||| ||||| |||||||| ||| |||||||||| || | |||||||||||| | ||
Sbjct: 397 atttcacctggagcctgcacagagaacttgatccaagcagaaattgaatccttcacacca 338
Query: 1924 gatggagtatccattctcacctttacacgagatccatgaggaataggtgatgtaccatct 1983
|||||||||||||| | | ||||||||| || ||||||||||||| | | |||||
Sbjct: 337 gatggagtatccatccgtatctttacacgtgagccatgaggaatagcaggggatccatca 278
Query: 1984 gcattgttaggcagaaaaatttcccaaacaccaaactcatttttgctcatacgatctgca 2043
||||||||||| || ||||| |||||||||||| | |||| | || ||||| |||||||
Sbjct: 277 gcattgttagggaggaaaatctcccaaacaccataatcatctctggtcatagtatctgca 218
Query: 2044 tttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgctccaggagcccat 2103
||||| | ||| |||||||||||||| || |||||||||||| |||||||||||||||
Sbjct: 217 tttgggttccaattgttgaagtcacctactaatgctgcagaatgcgctccaggagcccat 158
Query: 2104 tctcgatatgtgataccttccgcgctgcgattaaatccaaacttctcataactacgggag 2163
||||| || |||||||||| || ||||| ||||||||| ||| ||||||| ||| ||
Sbjct: 157 tctcggtaagtgatacctttagcactgcgggtaaatccaagcttttcataaccacgagaa 98
Query: 2164 aaggcttccaagcctccttcatgtt 2188
|| ||||||| || ||||||||||
Sbjct: 97 aaaacttccaatccaccttcatgtt 73
>gb|BI948391.1|BI948391 HVSMEl0009F19f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0009F19f, mRNA sequence
Length = 728
Score = 220 bits (111), Expect = 2e-055
Identities = 225/263 (85%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 263 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 204
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 203 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 144
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 143 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 84
Query: 534 ctggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcctgatcaaa 593
|||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 83 ctggtgctcagatgtcataaacccatatttttcctcaagatgctgcattgcctgatcgaa 24
Query: 594 ctcttgcataccatgatacctaa 616
||||||||||||| |||| ||||
Sbjct: 23 ctcttgcataccacgatatctaa 1
>gb|BM443964.2|BM443964 EBem09_SQ002_F04_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_F04 5', mRNA sequence
Length = 388
Score = 208 bits (105), Expect = 7e-052
Identities = 306/373 (82%)
Strand = Plus / Plus
Query: 1816 acatactttacctcttcaggaggatcataataaatcccatcatatggtatttctcctggg 1875
|||||||| |||||||||| ||||||||||| || |||| |||||||||| |||||
Sbjct: 9 acatacttctcctcttcaggtggatcataatatatgccattgaatggtatttcacctgga 68
Query: 1876 gcctgcactgagtacttgatccaggctggaattgaatcctttatccctgatggagtatcc 1935
|||||||| ||| |||||||||| || | |||||||||||| | || |||||||||| |
Sbjct: 69 gcctgcacagagaacttgatccaagcagaaattgaatccttcacaccagatggagtattc 128
Query: 1936 attctcacctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggc 1995
|| | | ||||||||| || ||||||||||||| | | ||||| |||||||||||
Sbjct: 129 atccgtatctttacacgtgagccatgaggaatagcaggggatccatcagcattgttaggg 188
Query: 1996 agaaaaatttcccaaacaccaaactcatttttgctcatacgatctgcatttggatcccag 2055
|| ||||| |||||||||||| | |||| | || ||||| |||||||||||| | |||
Sbjct: 189 aggaaaatctcccaaacaccataatcatctctggtcatagtatctgcatttgggttccaa 248
Query: 2056 ttgttgaagtcacccaccaatgctgcagaaaatgctccaggagcccattctcgatatgtg 2115
|||||||||||||| || |||||||||||| |||||||||||||||||||| || |||
Sbjct: 249 ttgttgaagtcacctactaatgctgcagaatgcgctccaggagcccattctcggtaagtg 308
Query: 2116 ataccttccgcgctgcgattaaatccaaacttctcataactacgggagaaggcttccaag 2175
||||||| || ||||| ||||||||| ||| ||||||| ||| || || |||||||
Sbjct: 309 atacctttagcactgcgggtaaatccaagcttttcataaccacgagaaaaaacttccaat 368
Query: 2176 cctccttcatgtt 2188
|| ||||||||||
Sbjct: 369 ccaccttcatgtt 381
>gb|BM444013.2|BM444013 EBem09_SQ002_L12_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_L12 5', mRNA sequence
Length = 376
Score = 190 bits (96), Expect = 2e-046
Identities = 270/328 (82%)
Strand = Plus / Plus
Query: 1816 acatactttacctcttcaggaggatcataataaatcccatcatatggtatttctcctggg 1875
|||||||| |||||||||| ||||||||||| || |||| |||||||||| |||||
Sbjct: 9 acatacttctcctcttcaggtggatcataatatatgccattgaatggtatttcacctgga 68
Query: 1876 gcctgcactgagtacttgatccaggctggaattgaatcctttatccctgatggagtatcc 1935
|||||||| ||| |||||||||| || | |||||||||||| | || ||||||||||||
Sbjct: 69 gcctgcacagagaacttgatccaagcagaaattgaatccttcacaccagatggagtatcc 128
Query: 1936 attctcacctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggc 1995
|| | | ||||||||| || ||||||||||||| | | ||| |||||||||||
Sbjct: 129 atccgtatctttacacgtgagccatgaggaatagcaggggatccactagcattgttaggg 188
Query: 1996 agaaaaatttcccaaacaccaaactcatttttgctcatacgatctgcatttggatcccag 2055
|| ||||| |||||||||||| | |||| | || ||||| |||||||||||| | |||
Sbjct: 189 aggaaaatctcccaaacaccataatcatctctggtcatagtatctgcatttgggttccaa 248
Query: 2056 ttgttgaagtcacccaccaatgctgcagaaaatgctccaggagcccattctcgatatgtg 2115
||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||
Sbjct: 249 ttgttgaagtcacccactaatgctgcagaatgcgctccaggagcccattctcggtaagtg 308
Query: 2116 ataccttccgcgctgcgattaaatccaa 2143
||||||| || ||||| |||||||||
Sbjct: 309 atacctttagcactgcgggtaaatccaa 336
>gb|BQ471544.1|BQ471544 HV02L24r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L24
5-PRIME, mRNA sequence
Length = 629
Score = 141 bits (71), Expect = 1e-031
Identities = 161/191 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 201 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 142
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 141 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 82
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 81 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 22
Query: 534 ctggtgatcag 544
|||||| ||||
Sbjct: 21 ctggtgctcag 11
>gb|AJ432603.1|AJ432603 AJ432603 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200084H10F1, mRNA sequence
Length = 666
Score = 135 bits (68), Expect = 9e-030
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 187 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 128
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 127 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 68
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatata 533
|||||||||||| ||||||| | ||||||||||| |||||||||||||| |||| |||
Sbjct: 67 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttccgagaaacata 8
Query: 534 ctgg 537
||||
Sbjct: 7 ctgg 4
>gb|AW982619.3|AW982619 HVSMEg0003M05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003M05f, mRNA sequence
Length = 642
Score = 123 bits (62), Expect = 3e-026
Identities = 143/170 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 170 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 111
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 110 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 51
Query: 474 taccaaatctcccttttcgaacacaatcaccttatcctcctcatgtttcc 523
|||||||||||| ||||||| | ||||||||||| |||||||||||||
Sbjct: 50 taccaaatctcctctttcgaagatgatcaccttatcttcctcatgtttcc 1
>gb|CA029212.1|CA029212 HZ64I18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64I18
5-PRIME, mRNA sequence
Length = 412
Score = 111 bits (56), Expect = 1e-022
Identities = 128/152 (84%)
Strand = Plus / Minus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgctccagg 2096
|||||||||||| | ||| |||||||||||||| || |||||||||||| ||||||||
Sbjct: 387 atctgcatttgggttccaattgttgaagtcacctactaatgctgcagaatgcgctccagg 328
Query: 2097 agcccattctcgatatgtgataccttccgcgctgcgattaaatccaaacttctcataact 2156
|||||||||||| || |||||||||| || ||||| ||||||||| ||| |||||||
Sbjct: 327 agcccattctcggtaagtgatacctttagcactgcgggtaaatccaagcttttcataacc 268
Query: 2157 acgggagaaggcttccaagcctccttcatgtt 2188
||| || || ||||||| || ||||||||||
Sbjct: 267 acgagaaaaaacttccaatccaccttcatgtt 236
>gb|CV060196.1|CV060196 BNEL55e10 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL55e10 5' similar to starch branching
enzyme IIa, mRNA sequence
Length = 535
Score = 111 bits (56), Expect = 1e-022
Identities = 128/152 (84%)
Strand = Plus / Minus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgctccagg 2096
|||||||||||| | ||| |||||||||||||| || |||||||||||| ||||||||
Sbjct: 511 atctgcatttgggttccaattgttgaagtcacctactaatgctgcagaatgcgctccagg 452
Query: 2097 agcccattctcgatatgtgataccttccgcgctgcgattaaatccaaacttctcataact 2156
|||||||||||| || |||||||||| || ||||| ||||||||| ||| |||||||
Sbjct: 451 agcccattctcggtaagtgatacctttagcactgcgggtaaatccaagcttttcataacc 392
Query: 2157 acgggagaaggcttccaagcctccttcatgtt 2188
||| || || ||||||| || ||||||||||
Sbjct: 391 acgagaaaaaacttccaatccaccttcatgtt 360
>gb|BU970082.1|BU970082 HB13I18r BC Hordeum vulgare subsp. vulgare cDNA clone HB13I18
5-PRIME, mRNA sequence
Length = 195
Score = 95.6 bits (48), Expect = 7e-018
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 2037 atctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgctccagg 2096
|||||| ||||| | ||| |||||||||||||| || |||||||||||| ||||||||
Sbjct: 164 atctgcctttgggttccaattgttgaagtcacctactaatgctgcagaatgcgctccagg 105
Query: 2097 agcccattctcgatatgtgataccttccgcgctgcgattaaatccaaacttctcataact 2156
|||||||||||| | |||||||||| || ||||| ||||||||| ||| |||||||
Sbjct: 104 agcccattctcggtcagtgatacctttagcactgcgggtaaatccaagcttttcataacc 45
Query: 2157 acgggagaaggcttccaagcctccttcatgtt 2188
||| || || ||||||| || ||||||||||
Sbjct: 44 acgagaaaaaacttccaatccaccttcatgtt 13
>gb|CA025941.1|CA025941 HZ53J13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53J13
5-PRIME, mRNA sequence
Length = 493
Score = 95.6 bits (48), Expect = 7e-018
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 139 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 80
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 79 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 20
Query: 474 taccaaatctcc 485
||||||||||||
Sbjct: 19 taccaaatctcc 8
>gb|AJ460560.1|AJ460560 AJ460560 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200020F08F1, mRNA sequence
Length = 360
Score = 85.7 bits (43), Expect = 7e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 127 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 68
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 67 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 8
Query: 474 taccaaa 480
|||||||
Sbjct: 7 taccaaa 1
>gb|CB875153.1|CB875153 HX07H03w HX Hordeum vulgare subsp. vulgare cDNA clone HX07H03
3-PRIME, mRNA sequence
Length = 572
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 354 cctgctaaatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccagg 413
|||||| ||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||
Sbjct: 450 cctgctgaatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccagg 509
Query: 414 ctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaa 473
||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||
Sbjct: 510 cttggaacacccaacacggtagtcaaaaaagctattgctccagtggaagttgaaaacaaa 569
Query: 474 tac 476
|||
Sbjct: 570 tac 572
>gb|AF064563.1|AF064563 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb)
gene, nuclear gene encoding plastid protein, partial cds
Length = 3960
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2088 tgctccaggagcccattctcgatatgtgataccttccgcgctgc 2131
||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 3855 tgctccaggagcccattctcggtaagtgataccttcagcgctgc 3812
Score = 60.0 bits (30), Expect = 4e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 2136 aaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcatcaat 2195
||||||||||||||| || | ||||| || | |||| |||||| || | |||||||||
Sbjct: 3733 aaatccaaacttctcgtagccgcgggaaaatacatccatgcctccatcgtattcatcaat 3674
Query: 2196 gtctgaacggattcttctatagaggctgta 2225
||||||||| ||||| ||||| ||||||||
Sbjct: 3673 gtctgaacgtattctcctatataggctgta 3644
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 2224 taccgatactcaagatggtactta 2247
||||||||||||||||||||||||
Sbjct: 3257 taccgatactcaagatggtactta 3234
>gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009O06f, mRNA sequence
Length = 764
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 298 ctcttggaaagtcgatccattctgggtggccaaactcattacccataaaatt 247
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 138 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 94
>gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_N21 5', mRNA sequence
Length = 687
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 375 ctcttggaaagtcgatccattctgggtggccaaactcattacccataaaatt 324
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 215 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 171
>gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB06H16
5-PRIME, mRNA sequence
Length = 498
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 391 ctcttggaaagtcgatccattctgggtggccaaactcattacccataaaatt 340
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 231 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 187
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1069 cgatagtcaaaacctaccccaccatcgtg 1097
||||||||||| ||||||||||| |||||
Sbjct: 32 cgatagtcaaaccctaccccaccctcgtg 4
>gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. vulgare cDNA clone HB12M24
5-PRIME, mRNA sequence
Length = 507
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 393 ctcttggaaagtcgatccattctgggtggccaaactcattacccataaaatt 342
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 233 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 189
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1069 cgatagtcaaaacctaccccaccatcgtg 1097
||||||||||| ||||||||||| |||||
Sbjct: 34 cgatagtcaaaccctaccccaccctcgtg 6
>gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. vulgare cDNA clone HB20D20
5-PRIME, mRNA sequence
Length = 515
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 336 ctcttggaaagtcgatccattctgggtggccaaactcattacccataaaatt 285
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 176 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 132
>gb|AW983497.2|AW983497 HVSMEg0010N11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010N11f, mRNA sequence
Length = 839
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 374 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 330
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1186 agcatcaagtaaaccactgcatctacatc 1214
||||||| |||||| ||||||||||||||
Sbjct: 58 agcatcatgtaaacaactgcatctacatc 30
Score = 40.1 bits (20), Expect = 0.38
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||| ||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 534 ctcttgaaaagtcgatccattctgggtggccaaactcattacccataaaatt 483
>gb|BG366769.1|BG366769 HVSMEi0008D20f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008D20f, mRNA sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 340 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 296
>gb|BQ472324.1|BQ472324 HB09O20T BC Hordeum vulgare subsp. vulgare cDNA clone HB09O20
5-PRIME, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 873 atacatatccttgtccatcaaccaaaacgcaatagtcttgtcgcc 917
|||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 522 atacatttccttgtccatcaagagaaatgccatagtcttgtcgcc 478
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1186 agcatcaagtaaaccactgcatctacatc 1214
||||||| |||||| ||||||||||||||
Sbjct: 206 agcatcatgtaaacaactgcatctacatc 178
>gb|BM097896.2|BM097896 EBpi03_SQ001_P15_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_P15 5', mRNA sequence
Length = 209
Score = 42.1 bits (21), Expect = 0.096
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 361 aatccaccaaatagtccagcgtcggagtccaagaccaccttatacaccccaggctttcga 420
||||||||||| ||| || | || ||||| ||| ||||||| ||| ||||||||| |
Sbjct: 83 aatccaccaaagagtgcatcatcagagtctaaggccaccttgtacttcccaggcttggaa 24
Query: 421 caaccaatacggtagtcaaaa 441
|| |||| |||||||||||||
Sbjct: 23 cacccaacacggtagtcaaaa 3
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 233,520
Number of Sequences: 312970
Number of extensions: 233520
Number of successful extensions: 68788
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68597
Number of HSP's gapped (non-prelim): 157
length of query: 2729
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2709
effective length of database: 168,875,139
effective search space: 457482751551
effective search space used: 457482751551
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)