BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ434507.1|AJ434507 AJ434507 S00002 Hordeum vulgare subs... 133 5e-030
gb|BQ465822.1|BQ465822 HU04M16r HU Hordeum vulgare subsp. v... 125 1e-027
gb|BQ664320.1|BQ664320 HV02N15u HV Hordeum vulgare subsp. v... 125 1e-027
gb|CA010134.1|CA010134 HT11K06u HT Hordeum vulgare subsp. v... 125 1e-027
gb|CA014543.1|CA014543 HT11K06r HT Hordeum vulgare subsp. v... 125 1e-027
gb|CA022994.1|CA022994 HZ44P02r HZ Hordeum vulgare subsp. v... 125 1e-027
gb|CA025075.1|CA025075 HZ51C08r HZ Hordeum vulgare subsp. v... 125 1e-027
gb|CB879699.1|CB879699 HP03F11w HP Hordeum vulgare subsp. v... 125 1e-027
gb|CK125497.1|CK125497 BES1824108m11 BES1824 Hordeum vulgar... 125 1e-027
gb|CA000360.1|CA000360 HS08G06u HS Hordeum vulgare subsp. v... 123 5e-027
gb|CA013509.1|CA013509 HT08K23r HT Hordeum vulgare subsp. v... 117 3e-025
gb|BG414620.2|BG414620 HVSMEk0003B17f Hordeum vulgare testa... 103 4e-021
gb|BE213758.1|BE213758 HV_CEb0001D03f Hordeum vulgare seedl... 58 2e-007
gb|BQ754170.1|BQ754170 EBca01_SQ003_B05_R carpel, pre-anthe... 54 4e-006
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 52 1e-005
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 52 1e-005
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 50 6e-005
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 6e-005
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 6e-005
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 6e-005
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 6e-005
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 6e-005
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.001
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.001
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.001
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.001
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.001
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.001
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.001
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.001
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.001
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.001
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.001
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.001
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.001
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.001
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.001
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.001
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 44 0.004
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.004
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.014
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.014
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.056
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.056
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.22
gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA li... 38 0.22
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 38 0.22
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 38 0.22
>gb|AJ434507.1|AJ434507 AJ434507 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037H07F1, mRNA sequence
Length = 478
Score = 133 bits (67), Expect = 5e-030
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 108 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 167
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 168 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 227
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||||||||||
Sbjct: 228 tgtcgtggatcacaccacgcaccatttcaag 258
>gb|BQ465822.1|BQ465822 HU04M16r HU Hordeum vulgare subsp. vulgare cDNA clone HU04M16
5-PRIME, mRNA sequence
Length = 594
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 362 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 421
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 422 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 481
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 482 tgtcgtggatcacaccacgcaccacttcaag 512
>gb|BQ664320.1|BQ664320 HV02N15u HV Hordeum vulgare subsp. vulgare cDNA clone HV02N15
3-PRIME, mRNA sequence
Length = 411
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 346 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 287
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 286 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 227
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 226 tgtcgtggatcacaccacgcaccacttcaag 196
>gb|CA010134.1|CA010134 HT11K06u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K06
3-PRIME, mRNA sequence
Length = 502
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 350 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 291
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 290 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 231
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 230 tgtcgtggatcacaccacgcaccacttcaag 200
>gb|CA014543.1|CA014543 HT11K06r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K06
5-PRIME, mRNA sequence
Length = 654
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 425 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 484
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 485 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 544
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 545 tgtcgtggatcacaccacgcaccacttcaag 575
>gb|CA022994.1|CA022994 HZ44P02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44P02
5-PRIME, mRNA sequence
Length = 640
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 412 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 471
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 472 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 531
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 532 tgtcgtggatcacaccacgcaccacttcaag 562
>gb|CA025075.1|CA025075 HZ51C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51C08
5-PRIME, mRNA sequence
Length = 599
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 398 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 457
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 458 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 517
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 518 tgtcgtggatcacaccacgcaccacttcaag 548
>gb|CB879699.1|CB879699 HP03F11w HP Hordeum vulgare subsp. vulgare cDNA clone HP03F11
3-PRIME, mRNA sequence
Length = 546
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 368 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 309
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 308 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 249
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 248 tgtcgtggatcacaccacgcaccacttcaag 218
>gb|CK125497.1|CK125497 BES1824108m11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M118 5-PRIME, mRNA sequence
Length = 763
Score = 125 bits (63), Expect = 1e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 423 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 482
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 483 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 542
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 543 tgtcgtggatcacaccacgcaccacttcaag 573
>gb|CA000360.1|CA000360 HS08G06u HS Hordeum vulgare subsp. vulgare cDNA clone HS08G06
3-PRIME, mRNA sequence
Length = 560
Score = 123 bits (62), Expect = 5e-027
Identities = 128/150 (85%)
Strand = Plus / Minus
Query: 2 tgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgcc 61
||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| |||
Sbjct: 345 tgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgcc 286
Query: 62 gggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaac 121
||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 285 gggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaat 226
Query: 122 gttgttgatcataccacacaccatttcaag 151
|| || ||||| ||||| ||||| ||||||
Sbjct: 225 gtcgtggatcacaccacgcaccacttcaag 196
>gb|CA013509.1|CA013509 HT08K23r HT Hordeum vulgare subsp. vulgare cDNA clone HT08K23
5-PRIME, mRNA sequence
Length = 478
Score = 117 bits (59), Expect = 3e-025
Identities = 128/151 (84%)
Strand = Plus / Minus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 301 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 242
Query: 61 cgggcctttgttcaaggcggacgccgttgatttctataatctggaactgagcaacaccaa 120
|||||| |||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 241 cgggccgctgttcaaggcagacgccgtggatttctataacctggagctgagcgacaccaa 182
Query: 121 cgttgttgatcataccacacaccatttcaag 151
|| || | ||| ||||| ||||| ||||||
Sbjct: 181 tgtcgtggttcacaccacgcaccacttcaag 151
>gb|BG414620.2|BG414620 HVSMEk0003B17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003B17f, mRNA sequence
Length = 647
Score = 103 bits (52), Expect = 4e-021
Identities = 128/152 (84%), Gaps = 1/152 (0%)
Strand = Plus / Plus
Query: 1 ctgcgtgttccgggtttctggccccaagtttctcaagctgaacaaggggacctggcatgc 60
|||||| |||||||| || ||||||||||| ||||||||| || ||||||||||| ||
Sbjct: 280 ctgcgtcttccgggtctccggccccaagttcctcaagctgcacgccgggacctggcacgc 339
Query: 61 cgggcctttgttcaa-ggcggacgccgttgatttctataatctggaactgagcaacacca 119
|||||| ||||||| ||| |||||||| ||||||||||| ||| | |||||| ||||||
Sbjct: 340 cgggccgctgttcaagggcagacgccgtggatttctataacctgaagctgagcgacacca 399
Query: 120 acgttgttgatcataccacacaccatttcaag 151
| || || ||||| ||||| ||||| ||||||
Sbjct: 400 atgtcgtggatcacaccacgcaccacttcaag 431
>gb|BE213758.1|BE213758 HV_CEb0001D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001D03f, mRNA sequence
Length = 977
Score = 58.0 bits (29), Expect = 2e-007
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 23 cccaagtttctcaagctgaacaaggggacctggcatgccgggcctttgttcaaggcggac 82
|||||||||||||||||| || ||||||||||| |||||||| ||||||| || |||
Sbjct: 558 cccaagtttctcaagctgcacgccgggacctggcacgccgggccggtgttcaa-gcagac 616
Query: 83 gccgttgatttct 95
||||| |||||||
Sbjct: 617 gccgtggatttct 629
>gb|BQ754170.1|BQ754170 EBca01_SQ003_B05_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_B05 5', mRNA sequence
Length = 401
Score = 54.0 bits (27), Expect = 4e-006
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 89 gatttctataatctggaactgagcaac 115
|||||||||||||||||||||||||||
Sbjct: 375 gatttctataatctggaactgagcaac 401
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 52.0 bits (26), Expect = 1e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||||||||||||||||
Sbjct: 499 agtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 52.0 bits (26), Expect = 1e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||||||||||||||||
Sbjct: 413 agtacctgcccgggcggccgctcgaa 438
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgctcgaa 365
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgct 413
||||||||||||||||||||||
Sbjct: 333 agtacctgcccgggcggccgct 354
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcga 416
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.014
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgc 412
|||||||||||||||||||||
Sbjct: 270 agtacctgcccgggcggccgc 290
Score = 40.1 bits (20), Expect = 0.056
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.014
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgc 412
|||||||||||||||||||||
Sbjct: 327 agtacctgcccgggcggccgc 347
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.056
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.056
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.056
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgc 412
|||||||||||||||||||
Sbjct: 312 tacctgcccgggcggccgc 330
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccg 411
|||||||||||||||||||
Sbjct: 194 gtacctgcccgggcggccg 212
>gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-150
similar to H.vulgare Bsi1 gene for putative protease
inhibitor, Accession No. Z48729, mRNA sequence
Length = 412
Score = 38.2 bits (19), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 395 acctgcccgggcggccgctcgaa 417
|||||||||||||||| ||||||
Sbjct: 338 acctgcccgggcggccactcgaa 360
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgct 413
|||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgct 83
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgct 413
|||||||||||||||||||
Sbjct: 121 acctgcccgggcggccgct 103
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,502
Number of Sequences: 312970
Number of extensions: 36502
Number of successful extensions: 11509
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11455
Number of HSP's gapped (non-prelim): 53
length of query: 417
length of database: 175,134,539
effective HSP length: 18
effective length of query: 399
effective length of database: 169,501,079
effective search space: 67630930521
effective search space used: 67630930521
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)