BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521865.2.1
(638 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV925892.1|AV925892 AV925892 K. Sato unpublished cDNA li... 311 2e-083
gb|AV928662.1|AV928662 AV928662 K. Sato unpublished cDNA li... 311 2e-083
gb|AV935887.1|AV935887 AV935887 K. Sato unpublished cDNA li... 311 2e-083
gb|BU976140.1|BU976140 HA03D09u HA Hordeum vulgare subsp. v... 289 6e-077
gb|BQ760241.1|BQ760241 EBpi07_SQ003_K16_R pistil, 12 DPA, n... 174 2e-042
gb|BI777049.2|BI777049 EBpi03_SQ001_M01_R pistil, 4 DPA, no... 161 3e-038
gb|CV055547.1|CV055547 BNEL120h12 Barley EST endosperm libr... 80 1e-013
gb|CV056920.1|CV056920 BNEL22a9 Barley EST endosperm librar... 80 1e-013
gb|CV059060.1|CV059060 BNEL43h6 Barley EST endosperm librar... 80 1e-013
gb|CV059284.1|CV059284 BNEL46d8 Barley EST endosperm librar... 80 1e-013
gb|CV062825.1|CV062825 BNEL83e1 Barley EST endosperm librar... 80 1e-013
gb|BQ657408.1|BQ657408 HA08H22u HA Hordeum vulgare subsp. v... 72 2e-011
gb|BU985075.1|BU985075 HF06A23r HF Hordeum vulgare subsp. v... 72 2e-011
gb|BM371651.1|BM371651 EBma08_SQ003_I01_R maternal, 28 DPA,... 50 9e-005
gb|CA031834.1|CA031834 HX11E06r HX Hordeum vulgare subsp. v... 44 0.006
gb|BQ659745.1|BQ659745 HF01J09w HF Hordeum vulgare subsp. v... 40 0.086
gb|BQ761974.1|BQ761974 EBpi01_SQ005_N09_R pistil, 1 DPA, no... 38 0.34
gb|CV055258.1|CV055258 BNEL118f1 Barley EST endosperm libra... 38 0.34
>gb|AV925892.1|AV925892 AV925892 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdd19 5', mRNA sequence
Length = 612
Score = 311 bits (157), Expect = 2e-083
Identities = 301/349 (86%)
Strand = Plus / Plus
Query: 11 ggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattggagaaggttgt 70
|||| |||| ||||||| || || |||||||| ||||| ||||||||||| || || |||
Sbjct: 232 ggagaacattttgttgggaacgtcctggtgcacgagagtgccaagattggggagggctgt 291
Query: 71 ctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacggcgtgaggctt 130
|||||||| |||||||| || ||||||||||| || ||||||||||| || ||||||||
Sbjct: 292 ctgattggccctgatgttgctattggacctggatgcgttgtggaggatggtgtgaggctc 351
Query: 131 tcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcatctcaaacagc 190
||||| ||||| || ||||| || || || || ||||||||||| |||||||||||||||
Sbjct: 352 tcccgatgcacggtgatgcgtggtgtacgcattaagaagcatgcgtgcatctcaaacagc 411
Query: 191 attatcggctggcactcaactgttggtcaatgggcacggatagagaatatgactatcctg 250
|| ||||||||||| || || || || ||||||||||| |||||||||||||||||||||
Sbjct: 412 atcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactatcctg 471
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
|| || ||||| ||||| |||| ||||| |||||||| |||||||||||||| || ||
Sbjct: 472 ggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgccgcac 531
Query: 311 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctc 359
|| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 532 aaggagatcaagtcaagcatccttaagcctgagatcgtcatgtgagctc 580
>gb|AV928662.1|AV928662 AV928662 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15d19 3', mRNA sequence
Length = 673
Score = 311 bits (157), Expect = 2e-083
Identities = 301/349 (86%)
Strand = Plus / Minus
Query: 11 ggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattggagaaggttgt 70
|||| |||| ||||||| || || |||||||| ||||| ||||||||||| || || |||
Sbjct: 451 ggagaacattttgttgggaacgtcctggtgcacgagagtgccaagattggggagggctgt 392
Query: 71 ctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacggcgtgaggctt 130
|||||||| |||||||| || ||||||||||| || ||||||||||| || ||||||||
Sbjct: 391 ctgattggccctgatgttgctattggacctggatgcgttgtggaggatggtgtgaggctc 332
Query: 131 tcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcatctcaaacagc 190
||||| ||||| || ||||| || || || || ||||||||||| |||||||||||||||
Sbjct: 331 tcccgatgcacggtgatgcgtggtgtacgcattaagaagcatgcgtgcatctcaaacagc 272
Query: 191 attatcggctggcactcaactgttggtcaatgggcacggatagagaatatgactatcctg 250
|| ||||||||||| || || || || ||||||||||| |||||||||||||||||||||
Sbjct: 271 atcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactatcctg 212
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
|| || ||||| ||||| |||| ||||| |||||||| |||||||||||||| || ||
Sbjct: 211 ggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgccgcac 152
Query: 311 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctc 359
|| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 151 aaggagatcaagtcaagcatccttaagcctgagatcgtcatgtgagctc 103
>gb|AV935887.1|AV935887 AV935887 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6n22 3', mRNA sequence
Length = 651
Score = 311 bits (157), Expect = 2e-083
Identities = 301/349 (86%)
Strand = Plus / Minus
Query: 11 ggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattggagaaggttgt 70
|||| |||| ||||||| || || |||||||| ||||| ||||||||||| || || |||
Sbjct: 419 ggagaacattttgttgggaacgtcctggtgcacgagagtgccaagattggggagggctgt 360
Query: 71 ctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacggcgtgaggctt 130
|||||||| |||||||| || ||||||||||| || ||||||||||| || ||||||||
Sbjct: 359 ctgattggccctgatgttgctattggacctggatgcgttgtggaggatggtgtgaggctc 300
Query: 131 tcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcatctcaaacagc 190
||||| ||||| || ||||| || || || || ||||||||||| |||||||||||||||
Sbjct: 299 tcccgatgcacggtgatgcgtggtgtacgcattaagaagcatgcgtgcatctcaaacagc 240
Query: 191 attatcggctggcactcaactgttggtcaatgggcacggatagagaatatgactatcctg 250
|| ||||||||||| || || || || ||||||||||| |||||||||||||||||||||
Sbjct: 239 atcatcggctggcattcgacggtcgggcaatgggcacgcatagagaatatgactatcctg 180
Query: 251 ggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgttctcccacat 310
|| || ||||| ||||| |||| ||||| |||||||| |||||||||||||| || ||
Sbjct: 179 ggagaagatgtacatgttggtgacgaggtctacagcaacggcggtgttgttctgccgcac 120
Query: 311 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctc 359
|| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 119 aaggagatcaagtcaagcatccttaagcctgagatcgtcatgtgagctc 71
>gb|BU976140.1|BU976140 HA03D09u HA Hordeum vulgare subsp. vulgare cDNA clone HA03D09
3-PRIME, mRNA sequence
Length = 485
Score = 289 bits (146), Expect = 6e-077
Identities = 269/310 (86%)
Strand = Plus / Minus
Query: 50 gccaagattggagaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgtt 109
||||||||||| || || ||||||||||| |||||||| || ||||||||||| || |||
Sbjct: 485 gccaagattggggagggctgtctgattggccctgatgttgctattggacctggatgcgtt 426
Query: 110 gtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaag 169
|||||||| || |||||||| ||||| ||||| || ||||| || || || || ||||||
Sbjct: 425 gtggaggatggtgtgaggctctcccgatgcacggtgatgcgtggtgtacgcattaagaag 366
Query: 170 catgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaatgggcacgg 229
||||| ||||||||||||||||| ||||||||||| || || || || |||||||||||
Sbjct: 365 catgcgtgcatctcaaacagcatcatcggctggcattcgacggtcgggcaatgggcacgc 306
Query: 230 atagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaat 289
||||||||||||||||||||||| || ||||| ||||| |||| ||||| ||||||||
Sbjct: 305 atagagaatatgactatcctgggagaagatgtacatgttggtgacgaggtctacagcaac 246
Query: 290 ggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtc 349
|||||||||||||| || || || ||||||||||||||||| || |||||||||||||||
Sbjct: 245 ggcggtgttgttctgccgcacaaggagatcaagtcaagcatccttaagcctgagatcgtc 186
Query: 350 atgtgagctc 359
||||||||||
Sbjct: 185 atgtgagctc 176
>gb|BQ760241.1|BQ760241 EBpi07_SQ003_K16_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K16 5', mRNA sequence
Length = 357
Score = 174 bits (88), Expect = 2e-042
Identities = 161/184 (87%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 176 tgcatctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagag 235
||||||||||||||||| ||||||||||| || || || || ||||||||||| ||||||
Sbjct: 2 tgcatctcaaacagcatcatcggctggcattcgacggtcgggcaatgggcacgcatagag 61
Query: 236 aatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggt 295
||||||||||||||||| || |||| ||||| |||| ||||| |||||||| ||||||
Sbjct: 62 aatatgactatcctgggaaag-atgtacatgttggtgacgaggtctacagcaacggcggt 120
Query: 296 gttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtga 355
|||||| | || || || ||||||||||||||||| || |||||||||||||||||||||
Sbjct: 121 gttgttttgccgcacaaggagatcaagtcaagcatccttaagcctgagatcgtcatgtga 180
Query: 356 gctc 359
||||
Sbjct: 181 gctc 184
>gb|BI777049.2|BI777049 EBpi03_SQ001_M01_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_M01 5', mRNA sequence
Length = 245
Score = 161 bits (81), Expect = 3e-038
Identities = 168/196 (85%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 164 aagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaatgg 223
||||||||||| |||||| ||||||| ||||||||||| || || || || ||||||
Sbjct: 23 aagaagcatgcgtgcatcggggacagcatcatcggctggcattcgacggtcgggcaatgg 82
Query: 224 gcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtac 283
||||| ||||||||| |||||||||||| || ||||| ||||| |||| ||||| |||
Sbjct: 83 gcacgcatagagaat--gactatcctgggagaagatgtacatgttggtgacgaggtctac 140
Query: 284 agcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgag 343
||||| |||||||||||||| || || || ||||||||||||||||| || |||||||||
Sbjct: 141 agcaacggcggtgttgttctgccgcacaaggagatcaagtcaagcatccttaagcctgag 200
Query: 344 atcgtcatgtgagctc 359
||||||||||||||||
Sbjct: 201 atcgtcatgtgagctc 216
>gb|CV055547.1|CV055547 BNEL120h12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL120h12 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 730
Score = 79.8 bits (40), Expect = 1e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 431 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 372
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 371 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatg 312
Query: 353 tgag 356
||||
Sbjct: 311 tgag 308
>gb|CV056920.1|CV056920 BNEL22a9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL22a9 5' similar to GDP-D-mannose
pyrophosphorylase, mRNA sequence
Length = 555
Score = 79.8 bits (40), Expect = 1e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 431 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 372
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 371 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatg 312
Query: 353 tgag 356
||||
Sbjct: 311 tgag 308
>gb|CV059060.1|CV059060 BNEL43h6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h6 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 500
Score = 79.8 bits (40), Expect = 1e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 426 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 367
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 366 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatg 307
Query: 353 tgag 356
||||
Sbjct: 306 tgag 303
>gb|CV059284.1|CV059284 BNEL46d8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46d8 5' similar to COG1208, GCD1,
Nucleoside-diphosphate-sugar pyrophosphorylase involved
in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits, mRNA
sequence
Length = 637
Score = 79.8 bits (40), Expect = 1e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 503 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 562
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 563 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatg 622
Query: 353 tgag 356
||||
Sbjct: 623 tgag 626
>gb|CV062825.1|CV062825 BNEL83e1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e1 5' similar to GDP-mannose
pyrophosphorylase, mRNA sequence
Length = 595
Score = 79.8 bits (40), Expect = 1e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 422 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 363
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 362 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatg 303
Query: 353 tgag 356
||||
Sbjct: 302 tgag 299
>gb|BQ657408.1|BQ657408 HA08H22u HA Hordeum vulgare subsp. vulgare cDNA clone HA08H22
3-PRIME, mRNA sequence
Length = 497
Score = 71.9 bits (36), Expect = 2e-011
Identities = 102/124 (82%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 412 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 353
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 352 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatg 293
Query: 353 tgag 356
||||
Sbjct: 292 tgag 289
>gb|BU985075.1|BU985075 HF06A23r HF Hordeum vulgare subsp. vulgare cDNA clone HF06A23
5-PRIME, mRNA sequence
Length = 455
Score = 71.9 bits (36), Expect = 2e-011
Identities = 102/124 (82%)
Strand = Plus / Minus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 410 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 351
Query: 293 ggtgttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatg 352
|| || || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 350 ggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatg 291
Query: 353 tgag 356
||||
Sbjct: 290 tgag 287
>gb|BM371651.1|BM371651 EBma08_SQ003_I01_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_I01 5', mRNA sequence
Length = 173
Score = 50.1 bits (25), Expect = 9e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 335 aagcctgagatcgtcatgtgagctc 359
|||||||||||||||||||||||||
Sbjct: 9 aagcctgagatcgtcatgtgagctc 33
>gb|CA031834.1|CA031834 HX11E06r HX Hordeum vulgare subsp. vulgare cDNA clone HX11E06
5-PRIME, mRNA sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.006
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 233 gagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggc 292
||||| ||||| ||||| || ||||| || || || || || |||||||||||||| |||
Sbjct: 531 gagaacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtgtacagcaacggc 590
Query: 293 ggtgttgttctcccacataaagagatcaag 322
|| || || ||||| || || |||||||||
Sbjct: 591 ggcgtcgtgctcccgcacaaggagatcaag 620
>gb|BQ659745.1|BQ659745 HF01J09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01J09
3-PRIME, mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tcttgttctttgttgaaaag 599
||||||||||||||||||||
Sbjct: 20 tcttgttctttgttgaaaag 1
>gb|BQ761974.1|BQ761974 EBpi01_SQ005_N09_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_N09 5', mRNA sequence
Length = 458
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 580 tcttgttctttgttgaaaa 598
|||||||||||||||||||
Sbjct: 430 tcttgttctttgttgaaaa 448
>gb|CV055258.1|CV055258 BNEL118f1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL118f1 5' similar to COG1208,
GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits, mRNA
sequence
Length = 778
Score = 38.2 bits (19), Expect = 0.34
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 314 gagatcaagtcaagcattctgaagcctgagatcgtcatgtgag 356
|||||| |||| ||||| || ||||| || |||||||||||||
Sbjct: 361 gagatcgagtccagcatcctcaagcccgaaatcgtcatgtgag 319
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,733
Number of Sequences: 312970
Number of extensions: 52733
Number of successful extensions: 14409
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14385
Number of HSP's gapped (non-prelim): 21
length of query: 638
length of database: 175,134,539
effective HSP length: 19
effective length of query: 619
effective length of database: 169,188,109
effective search space: 104727439471
effective search space used: 104727439471
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)