BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521686.2.1
(2104 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. v... 94 2e-017
gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. v... 88 1e-015
gb|CB875167.1|CB875167 HX07H18w HX Hordeum vulgare subsp. v... 60 3e-007
gb|BU996956.1|BU996956 HI06G16r HI Hordeum vulgare subsp. v... 58 1e-006
gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DA... 48 0.001
gb|BQ469981.1|BQ469981 HX01G20T HX Hordeum vulgare subsp. v... 48 0.001
gb|BM098719.2|BM098719 EBem08_SQ003_O03_R embryo, 40 DPA, n... 48 0.001
gb|BM374215.2|BM374215 EBma03_SQ003_P20_R maternal, 8 DPA, ... 48 0.001
gb|BU995653.1|BU995653 HM10O21r HM Hordeum vulgare subsp. v... 48 0.001
gb|CA032731.1|CA032731 HX14A20r HX Hordeum vulgare subsp. v... 48 0.001
gb|BE193522.1|BE193522 HVSMEh0081G20f Hordeum vulgare 5-45 ... 44 0.019
gb|BF254550.2|BF254550 HVSMEf0004F12f Hordeum vulgare seedl... 44 0.019
gb|BE454302.2|BE454302 HVSMEh0093J15f Hordeum vulgare 5-45 ... 44 0.019
gb|BG365096.1|BG365096 HVSMEi0001F01f Hordeum vulgare 20 DA... 44 0.019
gb|BG365097.1|BG365097 HVSMEi0001F02f Hordeum vulgare 20 DA... 44 0.019
gb|BG367570.1|BG367570 HVSMEi0012L22f Hordeum vulgare 20 DA... 44 0.019
gb|BI949541.1|BI949541 HVSMEl0014I13f Hordeum vulgare spike... 44 0.019
gb|BG418485.1|BG418485 HVSMEk0022N15f Hordeum vulgare testa... 44 0.019
gb|BE455017.3|BE455017 HVSMEh0095N22f Hordeum vulgare 5-45 ... 44 0.019
gb|BE603178.3|BE603178 HVSMEh0102F19f Hordeum vulgare 5-45 ... 44 0.019
gb|BG369203.2|BG369203 HVSMEi0023C08f Hordeum vulgare 20 DA... 44 0.019
gb|BG416643.2|BG416643 HVSMEk0013O12f Hordeum vulgare testa... 44 0.019
gb|BM369529.2|BM369529 EBem07_SQ003_N18_R embryo, 28 DPA, n... 44 0.019
gb|BM369564.2|BM369564 EBem07_SQ003_P15_R embryo, 28 DPA, n... 44 0.019
gb|CA000994.1|CA000994 HS05O01u HS Hordeum vulgare subsp. v... 44 0.019
gb|CA001185.1|CA001185 HS05B01u HS Hordeum vulgare subsp. v... 44 0.019
gb|CA018524.1|CA018524 HV08O03r HV Hordeum vulgare subsp. v... 44 0.019
gb|CK125569.1|CK125569 BES1824109b07 BES1824 Hordeum vulgar... 44 0.019
gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 ... 42 0.074
gb|BI958610.1|BI958610 HVSMEn0015O05f Hordeum vulgare rachi... 42 0.074
gb|BI960357.1|BI960357 HVSMEn0024F11f Hordeum vulgare rachi... 42 0.074
gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedl... 42 0.074
gb|BF628907.2|BF628907 HVSMEb0009C12f Hordeum vulgare seedl... 40 0.29
gb|BG365432.1|BG365432 HVSMEi0002K17f Hordeum vulgare 20 DA... 40 0.29
gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedl... 40 0.29
gb|BF255745.3|BF255745 HVSMEf0007L02f Hordeum vulgare seedl... 40 0.29
gb|AJ462219.1|AJ462219 AJ462219 S00002 Hordeum vulgare subs... 40 0.29
gb|BQ661457.1|BQ661457 HM03J06u HM Hordeum vulgare subsp. v... 40 0.29
>gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H18
5-PRIME, mRNA sequence
Length = 616
Score = 93.7 bits (47), Expect = 2e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 667 gaaccgctccggcgcgaacgcgtccgggtcggcccacacggcggcatcgtgggttatggc 726
|||||||||||| |||| | ||||| |||||||||||| ||| ||||||||||||||
Sbjct: 508 gaaccgctccgggcggaactcttccggctcggcccacacgtcggggtcgtgggttatggc 449
Query: 727 ccacatattcaccatcgccgtggtgccagccggga 761
|||||| |||||||| |||||||||||||| ||||
Sbjct: 448 ccacatgttcaccatggccgtggtgccagcgggga 414
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 1007 gtgtccgtaccgcggaagaccatctcccagaggatggcgaccatgtcgtcgtcgccgagc 1066
|||||||| |||||||| |||||||||||||| | |||| ||||||| ||||| |||||
Sbjct: 171 gtgtccgtcccgcggaacaccatctcccagagcaccgcgatcatgtcggcgtcggcgagc 112
Query: 1067 ttctcgtcaccctcgagggagaggagcacgtcg 1099
|| ||| | || | ||||||||| || ||||||
Sbjct: 111 ttgtcgccgccttggagggagagcaggacgtcg 79
Score = 52.0 bits (26), Expect = 8e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 783 gcacgtcggcggtggcgaggcgagcccagctcagcagcgggccaggcgggtgggcgcgca 842
||||||| | |||||||||||| ||||| ||||||||||| |||||||| | ||||
Sbjct: 395 gcacgtccgaggtggcgaggcgggcccatgagagcagcgggcctggcgggtgcacccgca 336
Query: 843 gcgtctcctt 852
||||||||||
Sbjct: 335 gcgtctcctt 326
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 593 cgcccggcgccgaacggggccaggcggaggtc 624
|||||||| |||||||| ||||||||||||||
Sbjct: 582 cgcccggccccgaacggcgccaggcggaggtc 551
>gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P05
5-PRIME, mRNA sequence
Length = 537
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 554 acggtggtgaggcccaggttcttgccggggcagacgcgacgcccggcgccgaacggggcc 613
||||||| |||| |||| |||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 320 acggtggcgagggccagcatcttcccggggcacacgcgccgcccggcgccgaacggggcc 261
Query: 614 aggcggaggtcg 625
||||||||||||
Sbjct: 260 aggcggaggtcg 249
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 667 gaaccgctccggcgcgaacgcgtccgggtcggcccacacggcggcatcgtgggttatggc 726
||||||||||||| |||| ||||| |||| |||||| || || ||||| | |||||
Sbjct: 219 gaaccgctccggccggaacagctccggctcgggccacaccgccgcgtcgtgcgcgatggc 160
Query: 727 ccacatattcaccatcgccgtggtgccagccgg 759
|||||| |||||||||||||| ||||| |||||
Sbjct: 159 ccacatgttcaccatcgccgtcgtgccggccgg 127
>gb|CB875167.1|CB875167 HX07H18w HX Hordeum vulgare subsp. vulgare cDNA clone HX07H18
3-PRIME, mRNA sequence
Length = 636
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 667 gaaccgctccggcgcgaacgcgtccgggtcggcccacacggcggcatcgtgggttatggc 726
|||||||||||| |||| | ||||| |||||||||||| ||| ||||||||||||||
Sbjct: 570 gaaccgctccgggcggaactcttccggctcggcccacacgtcggggtcgtgggttatggc 629
Query: 727 ccacat 732
||||||
Sbjct: 630 ccacat 635
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 593 cgcccggcgccgaacggggccaggcggaggtc 624
|||||||| |||||||| ||||||||||||||
Sbjct: 496 cgcccggccccgaacggcgccaggcggaggtc 527
>gb|BU996956.1|BU996956 HI06G16r HI Hordeum vulgare subsp. vulgare cDNA clone HI06G16
5-PRIME, mRNA sequence
Length = 560
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1514 cgcggggagaataggtgcgtggacgcgacgcggcggaggcggcgccagtactcgccgttg 1573
||||| ||||| ||||||| ||||| ||||||||||| ||||||||| |||||| |
Sbjct: 305 cgcggcgagaagaggtgcgaggacgacacgcggcggagcgtgcgccagtaggcgccgtag 246
Query: 1574 ggcgcgaacccgatggc 1590
|| ||||||||||||||
Sbjct: 245 ggggcgaacccgatggc 229
>gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011F22f, mRNA sequence
Length = 517
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1554 ggcgccagtactcgccgttgggcgcgaa 1581
|||||||||||||||||| |||||||||
Sbjct: 481 ggcgccagtactcgccgtagggcgcgaa 454
>gb|BQ469981.1|BQ469981 HX01G20T HX Hordeum vulgare subsp. vulgare cDNA clone HX01G20
5-PRIME, mRNA sequence
Length = 435
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 593 cgcccggcgccgaacggggccaggcggaggtc 624
|||||||| |||||||| ||||||||||||||
Sbjct: 102 cgcccggccccgaacggcgccaggcggaggtc 71
>gb|BM098719.2|BM098719 EBem08_SQ003_O03_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_O03 5', mRNA sequence
Length = 424
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 844 cgtctccttcacaaccgcctgcaggtacggca 875
|||||||||||| |||||||||||||| ||||
Sbjct: 356 cgtctccttcaccaccgcctgcaggtagggca 325
>gb|BM374215.2|BM374215 EBma03_SQ003_P20_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_P20 5', mRNA sequence
Length = 553
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 593 cgcccggcgccgaacggggccaggcggaggtc 624
|||||||| |||||||| ||||||||||||||
Sbjct: 106 cgcccggccccgaacggcgccaggcggaggtc 75
>gb|BU995653.1|BU995653 HM10O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O21
5-PRIME, mRNA sequence
Length = 367
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 844 cgtctccttcacaaccgcctgcaggtacggca 875
|||||||||||| |||||||||||||| ||||
Sbjct: 174 cgtctccttcaccaccgcctgcaggtagggca 143
>gb|CA032731.1|CA032731 HX14A20r HX Hordeum vulgare subsp. vulgare cDNA clone HX14A20
5-PRIME, mRNA sequence
Length = 568
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 593 cgcccggcgccgaacggggccaggcggaggtc 624
|||||||| |||||||| ||||||||||||||
Sbjct: 74 cgcccggccccgaacggcgccaggcggaggtc 43
>gb|BE193522.1|BE193522 HVSMEh0081G20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081G20f, mRNA sequence
Length = 804
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 150 cgacgccgcggacgtccacgtc 171
>gb|BF254550.2|BF254550 HVSMEf0004F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004F12f, mRNA sequence
Length = 799
Score = 44.1 bits (22), Expect = 0.019
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 842 agcgtctccttcacaaccgcctgcaggtacggca 875
|||| ||||||||| || ||||||||||||||||
Sbjct: 142 agcgactccttcacgacggcctgcaggtacggca 109
>gb|BE454302.2|BE454302 HVSMEh0093J15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093J15f, mRNA sequence
Length = 979
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 165 cgacgccgcggacgtccacgtc 186
>gb|BG365096.1|BG365096 HVSMEi0001F01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001F01f, mRNA sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 164 cgacgccgcggacgtccacgtc 185
>gb|BG365097.1|BG365097 HVSMEi0001F02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001F02f, mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 164 cgacgccgcggacgtccacgtc 185
>gb|BG367570.1|BG367570 HVSMEi0012L22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012L22f, mRNA sequence
Length = 713
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 137 cgacgccgcggacgtccacgtc 158
>gb|BI949541.1|BI949541 HVSMEl0014I13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0014I13f, mRNA sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 161 cgacgccgcggacgtccacgtc 182
>gb|BG418485.1|BG418485 HVSMEk0022N15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022N15f, mRNA sequence
Length = 873
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 72 cgacgccgcggacgtccacgtc 93
>gb|BE455017.3|BE455017 HVSMEh0095N22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095N22f, mRNA sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 173 cgacgccgcggacgtccacgtc 194
>gb|BE603178.3|BE603178 HVSMEh0102F19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102F19f, mRNA sequence
Length = 776
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 174 cgacgccgcggacgtccacgtc 195
>gb|BG369203.2|BG369203 HVSMEi0023C08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0023C08f, mRNA sequence
Length = 871
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 167 cgacgccgcggacgtccacgtc 188
>gb|BG416643.2|BG416643 HVSMEk0013O12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0013O12f, mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 173 cgacgccgcggacgtccacgtc 194
>gb|BM369529.2|BM369529 EBem07_SQ003_N18_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_N18 5', mRNA sequence
Length = 337
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 168 cgacgccgcggacgtccacgtc 189
>gb|BM369564.2|BM369564 EBem07_SQ003_P15_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P15 5', mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 169 cgacgccgcggacgtccacgtc 190
>gb|CA000994.1|CA000994 HS05O01u HS Hordeum vulgare subsp. vulgare cDNA clone HS05O01
3-PRIME, mRNA sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 211 cgacgccgcggacgtccacgtc 190
>gb|CA001185.1|CA001185 HS05B01u HS Hordeum vulgare subsp. vulgare cDNA clone HS05B01
3-PRIME, mRNA sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 211 cgacgccgcggacgtccacgtc 190
>gb|CA018524.1|CA018524 HV08O03r HV Hordeum vulgare subsp. vulgare cDNA clone HV08O03
5-PRIME, mRNA sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 183 cgacgccgcggacgtccacgtc 204
>gb|CK125569.1|CK125569 BES1824109b07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B079 5-PRIME, mRNA sequence
Length = 558
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 624 cgacgccgcggacgtccacgtc 645
||||||||||||||||||||||
Sbjct: 25 cgacgccgcggacgtccacgtc 46
>gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091B12f, mRNA sequence
Length = 904
Score = 42.1 bits (21), Expect = 0.074
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1556 cgccagtactcgccgttgggcgcgaacccgatg 1588
|||||||||||||||| |||||||| ||||||
Sbjct: 391 cgccagtactcgccgtacggcgcgaagccgatg 359
>gb|BI958610.1|BI958610 HVSMEn0015O05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015O05f,
mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.074
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 1530 gcgtggacgcgacgcggcg-gaggcggcg 1557
||||||||||||||||||| |||||||||
Sbjct: 62 gcgtggacgcgacgcggcgcgaggcggcg 34
>gb|BI960357.1|BI960357 HVSMEn0024F11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024F11f,
mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.074
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 1530 gcgtggacgcgacgcggcg-gaggcggcg 1557
||||||||||||||||||| |||||||||
Sbjct: 62 gcgtggacgcgacgcggcgcgaggcggcg 34
>gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P04f, mRNA sequence
Length = 900
Score = 42.1 bits (21), Expect = 0.074
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1554 ggcgccagtactcgccgttgggcgcgaac 1582
|||||||||||||||||| |||||||||
Sbjct: 495 ggcgccagtactcgccgtaaggcgcgaac 467
>gb|BF628907.2|BF628907 HVSMEb0009C12f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009C12f, mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1985 agcgccgggagcgcgtacac 2004
||||||||||||||||||||
Sbjct: 476 agcgccgggagcgcgtacac 457
>gb|BG365432.1|BG365432 HVSMEi0002K17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002K17f, mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 662 ggcaggaaccgctccggcgcgaac 685
|||||||||||||||||| |||||
Sbjct: 249 ggcaggaaccgctccggcacgaac 226
>gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011B08f, mRNA sequence
Length = 994
Score = 40.1 bits (20), Expect = 0.29
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 847 ctccttcacaaccgcctgcaggtacggcatgcgcgccacgtcgg 890
||||||||| || |||||||||||| ||| || |||| ||||||
Sbjct: 151 ctccttcaccacggcctgcaggtactgcaggctcgccgcgtcgg 108
>gb|BF255745.3|BF255745 HVSMEf0007L02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007L02f, mRNA sequence
Length = 866
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 958 cgggtggcgcaccagctccg 977
||||||||||||||||||||
Sbjct: 477 cgggtggcgcaccagctccg 458
>gb|AJ462219.1|AJ462219 AJ462219 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051F08F1, mRNA sequence
Length = 180
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1140 ggcggcgccggtgctcgtcg 1159
||||||||||||||||||||
Sbjct: 62 ggcggcgccggtgctcgtcg 81
>gb|BQ661457.1|BQ661457 HM03J06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J06
3-PRIME, mRNA sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1140 ggcggcgccggtgctcgtcg 1159
||||||||||||||||||||
Sbjct: 293 ggcggcgccggtgctcgtcg 274
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 360,252
Number of Sequences: 312970
Number of extensions: 360252
Number of successful extensions: 109611
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 109533
Number of HSP's gapped (non-prelim): 79
length of query: 2104
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2084
effective length of database: 168,875,139
effective search space: 351935789676
effective search space used: 351935789676
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)