BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ470705.1|BQ470705 HX03M12r HX Hordeum vulgare subsp. v... 710 0.0
gb|BQ664209.1|BQ664209 HV02F12u HV Hordeum vulgare subsp. v... 700 0.0
gb|BE519761.3|BE519761 HV_CEb0021C04f Hordeum vulgare seedl... 682 0.0
gb|AL504406.1|AL504406 AL504406 Hordeum vulgare Barke roots... 676 0.0
gb|AL504109.1|AL504109 AL504109 Hordeum vulgare Barke roots... 658 0.0
gb|CA025677.1|CA025677 HZ52M20r HZ Hordeum vulgare subsp. v... 603 e-171
gb|AL504527.1|AL504527 AL504527 Hordeum vulgare Barke roots... 601 e-170
gb|BG367496.1|BG367496 HVSMEi0012H14f Hordeum vulgare 20 DA... 591 e-167
gb|AV917422.1|AV917422 AV917422 K. Sato unpublished cDNA li... 585 e-165
gb|BJ463086.1|BJ463086 BJ463086 K. Sato unpublished cDNA li... 577 e-163
gb|AV913914.1|AV913914 AV913914 K. Sato unpublished cDNA li... 573 e-162
gb|BF260290.3|BF260290 HVSMEf0021J18f Hordeum vulgare seedl... 559 e-157
gb|AV921527.1|AV921527 AV921527 K. Sato unpublished cDNA li... 545 e-153
gb|AV922603.1|AV922603 AV922603 K. Sato unpublished cDNA li... 545 e-153
gb|BF620285.2|BF620285 HVSMEc0019F06f Hordeum vulgare seedl... 535 e-150
gb|AJ436646.1|AJ436646 AJ436646 S00002 Hordeum vulgare subs... 533 e-150
gb|BI778834.2|BI778834 EBro01_SQ001_L02_R root, 3 week, hyd... 533 e-150
gb|BJ467535.1|BJ467535 BJ467535 K. Sato unpublished cDNA li... 531 e-149
gb|BM817083.1|BM817083 HC01F04_T3.ab1 HC Hordeum vulgare su... 529 e-149
gb|BJ465891.1|BJ465891 BJ465891 K. Sato unpublished cDNA li... 529 e-149
gb|BE216506.2|BE216506 HV_CEb0010K21f Hordeum vulgare seedl... 527 e-148
gb|AL505149.1|AL505149 AL505149 Hordeum vulgare Barke roots... 523 e-147
gb|BF258169.3|BF258169 HVSMEf0014P23f Hordeum vulgare seedl... 492 e-137
gb|BI777730.2|BI777730 EBro08_SQ001_K12_R root, 3 week, dro... 492 e-137
gb|BI960006.1|BI960006 HVSMEn0022N09f Hordeum vulgare rachi... 484 e-135
gb|BQ471406.1|BQ471406 HV02F12r HV Hordeum vulgare subsp. v... 468 e-130
gb|BQ665478.1|BQ665478 HX03M12u HX Hordeum vulgare subsp. v... 466 e-129
gb|BQ767330.1|BQ767330 EBro08_SQ008_H18_R root, 3 week, dro... 464 e-129
gb|BF257476.2|BF257476 HVSMEf0013A08f Hordeum vulgare seedl... 412 e-113
gb|BF261518.2|BF261518 HV_CEa0001H23f Hordeum vulgare seedl... 402 e-110
gb|BG308974.1|BG308974 HVSMEc0001C17f Hordeum vulgare seedl... 391 e-107
gb|BI779253.2|BI779253 EBro01_SQ003_H11_R root, 3 week, hyd... 391 e-107
gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA,... 385 e-105
gb|BF253649.2|BF253649 HVSMEf0001L18f Hordeum vulgare seedl... 379 e-103
gb|BI959752.1|BI959752 HVSMEn0021E03f Hordeum vulgare rachi... 367 e-100
gb|BQ767241.1|BQ767241 EBro08_SQ008_I11_R root, 3 week, dro... 361 5e-098
gb|BG345061.2|BG345061 HVSMEg0018H23f Hordeum vulgare pre-a... 343 1e-092
gb|AJ463481.1|AJ463481 AJ463481 S00002 Hordeum vulgare subs... 333 1e-089
gb|AL502425.1|AL502425 AL502425 Hordeum vulgare Barke roots... 331 4e-089
gb|AJ433404.1|AJ433404 AJ433404 S00002 Hordeum vulgare subs... 327 7e-088
gb|BF261377.2|BF261377 HV_CEa0001C01f Hordeum vulgare seedl... 319 2e-085
gb|BE558391.1|BE558391 HV_CEb0017H19f Hordeum vulgare seedl... 313 1e-083
gb|BJ465823.1|BJ465823 BJ465823 K. Sato unpublished cDNA li... 313 1e-083
gb|BM370693.2|BM370693 EBro04_SQ001_N15_R root, 3 week, sal... 311 4e-083
gb|BQ762245.1|BQ762245 EBro01_SQ005_B10_R root, 3 week, hyd... 305 3e-081
gb|CA023650.1|CA023650 HZ46P09r HZ Hordeum vulgare subsp. v... 305 3e-081
gb|CA026572.1|CA026572 HZ56E18r HZ Hordeum vulgare subsp. v... 303 1e-080
gb|BF257700.2|BF257700 HVSMEf0013K04f Hordeum vulgare seedl... 301 4e-080
gb|BM370681.2|BM370681 EBro04_SQ001_M14_R root, 3 week, sal... 299 2e-079
gb|BI955765.1|BI955765 HVSMEm0024G17f Hordeum vulgare green... 295 2e-078
emb|AJ234782.1|HVU234782 Hordeum vulgare genomic DNA fragme... 281 4e-074
gb|BF253423.2|BF253423 HVSMEf0001G03f Hordeum vulgare seedl... 266 2e-069
gb|AL501446.1|AL501446 AL501446 Hordeum vulgare Barke roots... 264 9e-069
gb|BG300103.1|BG300103 HVSMEb0011H20f Hordeum vulgare seedl... 244 8e-063
gb|BF256412.2|BF256412 HVSMEf0009I22f Hordeum vulgare seedl... 242 3e-062
gb|BE215541.1|BE215541 HV_CEb0008B12f Hordeum vulgare seedl... 240 1e-061
gb|CA025894.1|CA025894 HZ53H05r HZ Hordeum vulgare subsp. v... 216 2e-054
gb|CA026832.1|CA026832 HZ57B14r HZ Hordeum vulgare subsp. v... 216 2e-054
gb|AJ435273.1|AJ435273 AJ435273 S00002 Hordeum vulgare subs... 212 3e-053
gb|AL501837.1|AL501837 AL501837 Hordeum vulgare Barke roots... 202 3e-050
gb|BQ471910.1|BQ471910 HV03N12r HV Hordeum vulgare subsp. v... 190 1e-046
gb|BQ764131.1|BQ764131 EBro03_SQ006_I11_R root, 3 week, wat... 188 4e-046
gb|AU252323.1|AU252323 AU252323 salt-stressed barley root c... 157 1e-036
emb|AJ234781.1|HVU234781 Hordeum vulgare genomic DNA fragme... 145 5e-033
gb|BU973663.1|BU973663 HB25J24r BC Hordeum vulgare subsp. v... 135 5e-030
gb|BI959145.1|BI959145 HVSMEn0018G02f Hordeum vulgare rachi... 115 5e-024
gb|AL503971.1|AL503971 AL503971 Hordeum vulgare Barke roots... 113 2e-023
gb|BQ762375.1|BQ762375 EBro01_SQ005_L13_R root, 3 week, hyd... 100 3e-019
gb|BE216787.2|BE216787 HV_CEb0011J09f Hordeum vulgare seedl... 92 7e-017
gb|BF618363.2|BF618363 HVSMEc0005H12f Hordeum vulgare seedl... 82 7e-014
gb|AL500548.1|AL500548 AL500548 Hordeum vulgare Barke roots... 74 2e-011
gb|BQ767980.1|BQ767980 EBro08_SQ010_I12_R root, 3 week, dro... 62 6e-008
gb|BE420941.1|BE420941 HWM004.B06 ITEC HWM Barley Leaf Libr... 56 4e-006
gb|BF624189.2|BF624189 HVSMEa0012H20f Hordeum vulgare seedl... 54 2e-005
gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. v... 48 0.001
gb|CA005397.1|CA005397 HU10K20u HU Hordeum vulgare subsp. v... 46 0.004
gb|AL504160.1|AL504160 AL504160 Hordeum vulgare Barke roots... 44 0.015
gb|BF621128.2|BF621128 HVSMEa0004D22f Hordeum vulgare seedl... 44 0.015
gb|BG343171.1|BG343171 HVSMEg0002P22f Hordeum vulgare pre-a... 44 0.015
gb|BI958347.1|BI958347 HVSMEn0014I13f Hordeum vulgare rachi... 44 0.015
gb|BI960513.1|BI960513 HVSMEn0024N22f Hordeum vulgare rachi... 44 0.015
gb|AV931728.1|AV931728 AV931728 K. Sato unpublished cDNA li... 44 0.015
gb|BQ656344.1|BQ656344 HA04M20u HA Hordeum vulgare subsp. v... 44 0.015
gb|BQ664275.1|BQ664275 HV02K08u HV Hordeum vulgare subsp. v... 44 0.015
gb|BI776301.2|BI776301 EBem04_SQ001_H10_R embryo, 12 DPA, n... 44 0.015
gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotranspos... 44 0.015
gb|BQ471507.1|BQ471507 HV02K08r HV Hordeum vulgare subsp. v... 42 0.059
gb|BF628382.2|BF628382 HVSMEb0003O04f Hordeum vulgare seedl... 40 0.23
gb|BI952928.1|BI952928 HVSMEm0008H17f Hordeum vulgare green... 40 0.23
gb|BE519842.2|BE519842 HV_CEb0021G19f Hordeum vulgare seedl... 40 0.23
gb|BI958715.1|BI958715 HVSMEn0016F08f Hordeum vulgare rachi... 40 0.23
gb|BQ766377.1|BQ766377 EBro08_SQ005_G19_R root, 3 week, dro... 40 0.23
gb|CA016384.1|CA016384 HV09C09u HV Hordeum vulgare subsp. v... 40 0.23
gb|CA018612.1|CA018612 HV09C09r HV Hordeum vulgare subsp. v... 40 0.23
gb|AU252316.1|AU252316 AU252316 salt-stressed barley root c... 40 0.23
>gb|BQ470705.1|BQ470705 HX03M12r HX Hordeum vulgare subsp. vulgare cDNA clone HX03M12
5-PRIME, mRNA sequence
Length = 650
Score = 710 bits (358), Expect = 0.0
Identities = 577/650 (88%)
Strand = Plus / Minus
Query: 481 cgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccgg 540
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 650 cgttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccgg 591
Query: 541 cgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggc 600
|||||||| | ||| ||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 590 cgagcttggcatcgctgaggttcatgtgcggcaccaggagcgggatggccatgcggaggc 531
Query: 601 ggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtca 660
||||||||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 530 ggagcgtctccttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtca 471
Query: 661 caggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccg 720
| ||| ||| | ||||||||| | | ||| |||||| || ||||| |||||||| |||
Sbjct: 470 ccggcgtgccagggcccagcacggcgacgatctcctcgcgcagcttctgctggatctccg 411
Query: 721 ggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||||||||||| |||| ||||||||||||||||||||| |||||||| || ||||
Sbjct: 410 ggtggttcaccagctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggctg 351
Query: 781 cgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctct 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 350 cgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttccttt 291
Query: 841 cggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttct 900
|||| || |||||||| |||||||||||| ||||||||| |||| ||| | ||| ||
Sbjct: 290 cggcttccaggatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctcct 231
Query: 901 tgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggc 960
|||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| | ||
Sbjct: 230 tgcgctgctggacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgc 171
Query: 961 agcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgt 1020
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 170 agcggttgaggtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgt 111
Query: 1021 actcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaaga 1080
| ||||||||||| || ||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 110 agtcgaagctctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaaga 51
Query: 1081 gcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatg 1130
|||||||| | || | |||||||||||||||||||||||||||||||||
Sbjct: 50 gcgggtcggccacggtctcgaaccggcggtcgaacatgatgcggaacatg 1
>gb|BQ664209.1|BQ664209 HV02F12u HV Hordeum vulgare subsp. vulgare cDNA clone HV02F12
3-PRIME, mRNA sequence
Length = 643
Score = 700 bits (353), Expect = 0.0
Identities = 568/640 (88%)
Strand = Plus / Plus
Query: 432 aggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgttggcgagg 491
|||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 2 aggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcgttggcgagg 61
Query: 492 aaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgagcttgccg 551
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct: 62 aaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcgagcttggca 121
Query: 552 tcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggagcgtctcc 611
||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 122 tcgctgaggttcatgtgcggcaccaggagcgggatggccatgcggaggcggagcgtctcc 181
Query: 612 ttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtcacaggcacgccg 671
|| |||| || ||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 182 ttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtcaccggcgtgcca 241
Query: 672 gcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccgggtggttcacc 731
| ||||||||| | | ||| |||||| || ||||| |||||||| ||||||||||||||
Sbjct: 242 gggcccagcacggcgacgatctcctcgcgcagcttctgctggatctccgggtggttcacc 301
Query: 732 agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatg 791
||||| |||| ||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 302 agctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggctgcgacgttgatg 361
Query: 792 ttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcctcgagg 851
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 362 ttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctttcggcttccagg 421
Query: 852 atgtgatccatggcgcaccggatctcaccagtctgagccatcaccttcttgcgctcctgt 911
||||| |||||||||||| ||||||||| |||| ||| | ||| |||||||| |||
Sbjct: 422 atgtggtccatggcgcacttgatctcacccgtcttctccaacgcctccttgcgctgctgg 481
Query: 912 acgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggcagcggttgagg 971
||||||| ||| ||||| ||||||||||| |||||||||| | |||||||||||||
Sbjct: 482 acgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgcagcggttgagg 541
Query: 972 tagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcgaagctc 1031
|| | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 542 tancggcggaggaaggggcggaggacggggatgaagtcgccgtagttgtagtcgaagctc 601
Query: 1032 tgcgacaggcggctgcgctccgcgttgagcgccttgagct 1071
|| || ||| ||||||||| |||||||||||||||||||
Sbjct: 602 tgggagaggatgctgcgctcggcgttgagcgccttgagct 641
>gb|BE519761.3|BE519761 HV_CEb0021C04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021C04f, mRNA sequence
Length = 706
Score = 682 bits (344), Expect = 0.0
Identities = 592/672 (88%), Gaps = 2/672 (0%)
Strand = Plus / Minus
Query: 271 gccccggcggcggcagcag-ctggaagttctgcaccagccggcccagggtgatgccgatg 329
||||||||||||||||||| || ||| || |||||||| | || || || |||||||||
Sbjct: 702 gccccggcggcggcagcaggctcgaatttttgcaccaggggtccgagcgtaatgccgatg 643
Query: 330 ataggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaag 389
|| |||||||| || |||||||| ||||||||||| |||| |||||| |||||||||||
Sbjct: 642 atgggcagcgcaagaatgatcccggggcagctccgtcggcggaccccgaagggcacgaac 583
Query: 390 cggaagtcgttgccgtgggcctccacggacttctcctcctccaggaagcgctcgggccgg 449
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct: 582 cggaagtcgttaccgtgggcctcgacggacttctcctcctcgaggaagcgctcgggcatg 523
Query: 450 aactcgtcgggccgcacccacctcttggggt-cgttggcgaggaaccaggcattgacgag 508
|||||||||| |||||||||| |||||||| ||||||||||||||||||| || |||||
Sbjct: 522 aactcgtcggcgcgcacccaccgcttggggttcgttggcgaggaaccaggcgttaacgag 463
Query: 509 gatcttggactcggcggggatgtcgtagccggcgagcttgccgtcgttgaggttcatgtg 568
||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||
Sbjct: 462 gatcttggattcggcggggatgtcgtaaccggcgagcttggcatcgctgaggttcatgtg 403
Query: 569 ggggaccagcagcgggatggccatgcgcaggcggagcgtctccttgacgatggcctgaag 628
|| ||||| ||||||||||||||||| ||||||||||||||||| |||| || ||| ||
Sbjct: 402 cggcaccaggagcgggatggccatgcggaggcggagcgtctccttcacgacggactgcag 343
Query: 629 gtaggggaggcgctcgaggtccggctccgtcacaggcacgccggcgcccagcaccgaggc 688
||||||||||||||| ||||||||||||||||| ||| ||| | ||||||||| | | |
Sbjct: 342 gtaggggaggcgctccaggtccggctccgtcaccggcgtgccagggcccagcacggcgac 283
Query: 689 gagctcctcccggagcttgtgctggatggccgggtggttcaccagctcggcgatgcccca 748
|| |||||| || ||||| |||||||| ||||||||||||||||||| |||| ||||||
Sbjct: 282 gatctcctcgcgcagcttctgctggatctccgggtggttcaccagctccgcgaggcccca 223
Query: 749 ctcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatgttctcgacgatgtagag 808
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 222 ctcgatcgaccacagcgtcgtctcaatggctgcgacgttgatgttctcgacgatgtagag 163
Query: 809 gacgttgtcgtggttgatctcgcccttcctctcggcctcgaggatgtgatccatggcgca 868
|||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct: 162 gacgttgtcgtggttgatctcgcccttcctttcggcttccaggatgtggtccatggcgca 103
Query: 869 ccggatctcaccagtctgagccatcaccttcttgcgctcctgtacgaagttgtcctcgaa 928
| ||||||||| |||| ||| | ||| |||||||| ||| ||||||| ||| |||||
Sbjct: 102 cttgatctcacccgtcttctccaacgcctccttgcgctgctggacgaagtggtcttcgaa 43
Query: 929 gaccttcatgcg 940
|||||||||||
Sbjct: 42 caccttcatgcg 31
>gb|AL504406.1|AL504406 AL504406 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D01V 5', mRNA sequence
Length = 689
Score = 676 bits (341), Expect = 0.0
Identities = 584/663 (88%), Gaps = 2/663 (0%)
Strand = Plus / Minus
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcgg-cggggatgtcgtag-ccgg 540
|||||||| |||||||| ||||| ||||||||||| |||| || |||||||||| ||||
Sbjct: 689 ttggcgagaaaccaggcgttgacaaggatcttggattcgggcgnggatgtcgtaaaccgg 630
Query: 541 cgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggc 600
|||||||| | ||| ||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 629 cgagcttggcatcgctgaggttcatgtgcggcaccaggagcgggatggccatgcggaggc 570
Query: 601 ggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtca 660
|||| |||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 569 ggagngtctccttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtca 510
Query: 661 caggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccg 720
| ||| ||| | ||||||||| | | ||| |||||| || ||||| |||||||| |||
Sbjct: 509 ccggcgtgccagggcccagcacggcgacgatctcctcgcgcagcttctgctggatctccg 450
Query: 721 ggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||||||||||| |||| ||||||||||||||||||||| |||||||| || ||||
Sbjct: 449 ggtggttcaccagctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggctg 390
Query: 781 cgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctct 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 389 cgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttccttt 330
Query: 841 cggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttct 900
|||| || |||||||| |||||||||||| ||||||||| |||| ||| | ||| ||
Sbjct: 329 cggcttccaggatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctcct 270
Query: 901 tgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggc 960
|||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| | ||
Sbjct: 269 tgcgctgctggacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgc 210
Query: 961 agcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgt 1020
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 209 agcggttgaggtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgt 150
Query: 1021 actcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaaga 1080
| ||||||||||| || ||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 149 agtcgaagctctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaaga 90
Query: 1081 gcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtaca 1140
|||||||| | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gcgggtcggccacggtctcgaaccggcggtcgaacatgatgcggaacatgtcgttgtaca 30
Query: 1141 tca 1143
|||
Sbjct: 29 tca 27
>gb|AL504109.1|AL504109 AL504109 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04D19V 5', mRNA sequence
Length = 700
Score = 658 bits (332), Expect = 0.0
Identities = 602/694 (86%)
Strand = Plus / Minus
Query: 849 aggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttcttgcgctcc 908
|||||||| |||||||||||| ||||||||| ||| ||| | ||| |||||||| |
Sbjct: 700 aggatgtggtccatggcgcacntgatctcacccgtcntctccaacgcctccttgcgctgc 641
Query: 909 tgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggcagcggttg 968
|| ||||||| ||| ||||| ||||||||||| |||||||||| | ||||||||||
Sbjct: 640 tggacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgcagcggttg 581
Query: 969 aggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcgaag 1028
||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 580 aggtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgtagtcgaag 521
Query: 1029 ctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggtcg 1088
||||| || ||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 520 ctctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaagagcgggtcg 461
Query: 1089 tgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatcagc 1148
| || | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 460 gccacggtctcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatgagc 401
Query: 1149 tggaggcggcggcggagcacgacgccgccggccgcggcctcggggtccttcctcacgtcc 1208
|| || | ||| || | | | ||||| || ||| ||| | ||||| ||| | ||||
Sbjct: 400 tgcagcctgcgtcgcaccnccacgcccttggtcgccgccgccgggtcggccctgaggtcc 341
Query: 1209 tccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccaccttgttg 1268
||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 340 tccaccaccagccgggcctcctcctnccaccccacgcggttctgcgccaccaccttgttg 281
Query: 1269 gtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtacaccgtg 1328
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtacaccgtg 221
Query: 1329 aacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtgcgggag 1388
|||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 220 aacaccatgtcctgtcccttgccggtgaagatgtcgaagacgacgttgcgggtgcgggag 161
Query: 1389 ccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgacaccacc 1448
|||||||| |||||||| |||||||| ||||||||||| ||||| ||| | || || |||
Sbjct: 160 ccgaactcgacgccctgggtgtggaggacctccttggcgagctcggggctgganacgacc 101
Query: 1449 accaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccatgaca 1508
||||||||||| ||||||||||| || ||||| |||||||||||||| |||| | |
Sbjct: 100 accaggttgcggacgcccatgcggaggaggaacncctcgccgaaccgcttggccaggccc 41
Query: 1509 aacaggttgcggtggttcaggtcgtcgcccacct 1542
| ||||||||||||||| ||||||||||| ||||
Sbjct: 40 atcaggttgcggtggttgaggtcgtcgccgacct 7
>gb|CA025677.1|CA025677 HZ52M20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52M20
5-PRIME, mRNA sequence
Length = 465
Score = 603 bits (304), Expect = e-171
Identities = 418/456 (91%)
Strand = Plus / Minus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 456 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 397
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 396 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 337
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 336 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 277
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 276 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 217
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 216 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 157
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 156 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 97
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcgg 602
|||||| | ||| ||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 96 agcttggcatcgctgaggttcatgtgcggcaccaggagcgggatggccatgcggaggcgg 37
Query: 603 agcgtctccttgacgatggcctgaaggtaggggagg 638
||||||||||| |||| || ||| ||||||||||||
Sbjct: 36 agcgtctccttcacgacggactgcaggtaggggagg 1
>gb|AL504527.1|AL504527 AL504527 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05I23V 5', mRNA sequence
Length = 667
Score = 601 bits (303), Expect = e-170
Identities = 502/567 (88%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 579 agcgggatggccatgcgc-aggcggagcgtctccttgacgatggcctgaaggtaggggag 637
||||||||||||||||| ||||||||||||||||| |||| || ||| |||||||||||
Sbjct: 610 agcgggatggccatgcgggaggcggagcgtctccttcacgacggactgcaggtaggggag 551
Query: 638 gcgctcgaggtccggctccgtcacaggcacgccggcgcccagcaccgaggcgagctcctc 697
|||||| ||||||||||||||||| ||| ||| | ||||||||| | | ||| ||||||
Sbjct: 550 gcgctccaggtccggctccgtcaccggcgtgccagggcccagcacggcgacgatctcctc 491
Query: 698 ccggagcttgtgctggatggccgggtggttcaccagctcggcgatgccccactcgatcga 757
|| ||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct: 490 gcgcagcttctgctggatctccgggtggttcaccagctccgcgaggccccactcgatcga 431
Query: 758 ccacagtgtcgtctcgatcgctgcgacgttgatgttctcgacgatgtagaggacgttgtc 817
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccacagcgtcgtctcaatggctgcgacgttgatgttctcgacgatgtagaggacgttgtc 371
Query: 818 gtggttgatctcgcccttcctctcggcctcgaggatgtgatccatggcgcaccggatctc 877
||||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||||
Sbjct: 370 gtggttgatctcgcccttcctttcggcttccaggatgtggtccatggcgcacttgatctc 311
Query: 878 accagtctgagccatcaccttcttgcgctcctgtacgaagttgtcctcgaagaccttcat 937
||| |||| ||| | ||| |||||||| ||| ||||||| ||| ||||| ||||||||
Sbjct: 310 acccgtcttctccaacgcctccttgcgctgctggacgaagtggtcttcgaacaccttcat 251
Query: 938 gcggcgcgtcttgaggtcgtggcagcggttgaggtagccgcggaggaaggggcggagcac 997
||| |||||||||| | ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 250 gcgcttggtcttgaggttggtgcagcggttgaggtagcggcggaggaaggggcggaggac 191
Query: 998 ggggatgaagtcgccgtagttgtactcgaagctctgcgacaggcggctgcgctccgcgtt 1057
|||||||||||||||||||||||| ||||||||||| || ||| ||||||||| |||||
Sbjct: 190 ggggatgaagtcgccgtagttgtagtcgaagctctgggagaggatgctgcgctcggcgtt 131
Query: 1058 gagcgccttgagcttgttgaagagcgggtcgtgctcgctgtcgaaccggcggtcgaacat 1117
|||||||||||||| |||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 130 gagcgccttgagctggttgaagagcgggtcggccacggtctcgaaccggcggtcgaacat 71
Query: 1118 gatgcggaacatgtcgttgtacatcat 1144
|||||||||||||||||||||||||||
Sbjct: 70 gatgcggaacatgtcgttgtacatcat 44
>gb|BG367496.1|BG367496 HVSMEi0012H14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012H14f, mRNA sequence
Length = 713
Score = 591 bits (298), Expect = e-167
Identities = 586/681 (86%), Gaps = 1/681 (0%)
Strand = Plus / Minus
Query: 626 aaggtaggggaggcgctcgaggtccggctccgtcacaggcacgccggcgccca-gcaccg 684
||||||||| ||||| || |||||||| |||||||| ||| ||| | ||||| |||| |
Sbjct: 681 aaggtagggaaggcggtccaggtccggttccgtcaccggcgggccagggcccaagcacgg 622
Query: 685 aggcgagctcctcccggagcttgtgctggatggccgggtggttcaccagctcggcgatgc 744
| || |||||| || ||||| | ||||| ||||||||||||||||||| ||| ||
Sbjct: 621 ggaggatctcctcgcgcagcttaagatggatctccgggtggttcaccagctccgcggggc 562
Query: 745 cccactcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatgttctcgacgatgt 804
||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct: 561 cccactcgatcgaccacagcgtcgtctcaatggttgcgacgttgatgttctcgacgatgt 502
Query: 805 agaggacgttgtcgtggttgatctcgcccttcctctcggcctcgaggatgtgatccatgg 864
|||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||
Sbjct: 501 agaggacgttgtcgtggttgatctcgcccttcctttcggcttccaggatgtggtccatgg 442
Query: 865 cgcaccggatctcaccagtctgagccatcaccttcttgcgctcctgtacgaagttgtcct 924
||||| ||||||||| |||| ||| | ||| |||||||| ||| ||||||| ||| |
Sbjct: 441 cgcacttgatctcacccgtcttctccaacgcctccttgcgctgctggacgaagtggtctt 382
Query: 925 cgaagaccttcatgcggcgcgtcttgaggtcgtggcagcggttgaggtagccgcggagga 984
|||| ||||||||||| |||||||||| | ||||||||||||||||| ||||||||
Sbjct: 381 cgaacaccttcatgcgcttggtcttgaggttggtgcagcggttgaggtagcggcggagga 322
Query: 985 aggggcggagcacggggatgaagtcgccgtagttgtactcgaagctctgcgacaggcggc 1044
|||||||||| |||||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct: 321 aggggcggaggacggggatgaagtcgccgtagttgtagtcgaagctctgggagaggatgc 262
Query: 1045 tgcgctccgcgttgagcgccttgagcttgttgaagagcgggtcgtgctcgctgtcgaacc 1104
||||||| ||||||||||||||||||| |||||||||||||||| | || | |||||||
Sbjct: 261 tgcgctcggcgttgagcgccttgagctggttgaagagcgggtcggccacggtctcgaacc 202
Query: 1105 ggcggtcgaacatgatgcggaacatgtcgttgtacatcatcagctggaggcggcggcgga 1164
|||||||||||||||||||||||||||||||||||||||| ||||| || ||| || |
Sbjct: 201 ggcggtcgaacatgatgcggaacatgtcgttgtacatcatgagctgcagcntgcgtcgca 142
Query: 1165 gcacgacgccgccggccgcggcctcggggtccttcctcacgtcctccaccaccagccggg 1224
||| ||||| || ||| ||| | ||||| ||| | ||||||||||||||||||||
Sbjct: 141 ccaccacgcccttggtcgccgccgccgggtcggccctgaggtcctccaccaccagccggg 82
Query: 1225 cctcctcctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacgg 1284
|||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |
Sbjct: 81 cctcctcctcccaccccacgcggttctgcgccaccaccttgttggtgaagaagggcaccg 22
Query: 1285 tcatgatgcgccgcatcttgc 1305
||||||| |||||||||||||
Sbjct: 21 tcatgatccgccgcatcttgc 1
>gb|AV917422.1|AV917422 AV917422 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18n15 5', mRNA sequence
Length = 619
Score = 585 bits (295), Expect = e-165
Identities = 538/619 (86%)
Strand = Plus / Minus
Query: 647 gtccggctccgtcacaggcacgccggcgcccagcaccgaggcgagctcctcccggagctt 706
||||||||||||||| ||| ||| | ||||||||| | | ||| |||||| || |||||
Sbjct: 619 gtccggctccgtcaccggcgtgccagggcccagcacggcgacgatctcctcgcgcagctt 560
Query: 707 gtgctggatggccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgt 766
|||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 559 ctgctggatctccgggtggttcaccagctccgcgaggccccactcgatcgaccacagcgt 500
Query: 767 cgtctcgatcgctgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgat 826
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgtctcaatggctgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgat 440
Query: 827 ctcgcccttcctctcggcctcgaggatgtgatccatggcgcaccggatctcaccagtctg 886
|||||||||||| ||||| || |||||||| |||||||||||| ||||||||| ||||
Sbjct: 439 ctcgcccttcctttcggcttccaggatgtggtccatggcgcacttgatctcacccgtctt 380
Query: 887 agccatcaccttcttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgt 946
||| | ||| |||||||| ||| ||||||| ||| ||||| ||||||||||| ||
Sbjct: 379 ctccaacgcctccttgcgctgctggacgaagtggtcttcgaacaccttcatgcgcttggt 320
Query: 947 cttgaggtcgtggcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaa 1006
|||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 319 cttgaggttggtgcagcggttgaggtagcggcggaggaaggggcggaggacggggatgaa 260
Query: 1007 gtcgccgtagttgtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgcctt 1066
||||||||||||||| ||||||||||| || ||| ||||||||| ||||||||||||||
Sbjct: 259 gtcgccgtagttgtagtcgaagctctgggagaggatgctgcgctcggcgttgagcgcctt 200
Query: 1067 gagcttgttgaagagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaa 1126
||||| |||||||||||||||| | || | |||||||||||||||||||||||||||||
Sbjct: 199 gagctggttgaagagcgggtcggccacggtctcgaaccggcggtcgaacatgatgcggaa 140
Query: 1127 catgtcgttgtacatcatcagctggaggcggcggcggagcacgacgccgccggccgcggc 1186
|||||||||||||||||| ||||| || | ||| || | ||| ||||| || ||| ||
Sbjct: 139 catgtcgttgtacatcatgagctgcagcctgcgtcgcaccaccacgcccttggtcgccgc 80
Query: 1187 ctcggggtccttcctcacgtcctccaccaccagccgggcctcctcctcccacccgccgcg 1246
| | ||||| ||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 79 cgccgggtcggccctgaggtcctccaccaccagccgggcctcctcctcccaccccacgcg 20
Query: 1247 gttctgggccaccaccttg 1265
|||||| ||||||||||||
Sbjct: 19 gttctgcgccaccaccttg 1
>gb|BJ463086.1|BJ463086 BJ463086 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25l03 5', mRNA sequence
Length = 570
Score = 577 bits (291), Expect = e-163
Identities = 480/543 (88%)
Strand = Plus / Minus
Query: 602 gagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtcac 661
|||||||||||| |||| || ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 570 gagcgtctccttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtcac 511
Query: 662 aggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccgg 721
||| ||| | ||||||||| | | ||| |||||| || ||||| |||||||| ||||
Sbjct: 510 cggcgtgccagggcccagcacggcgacgatctcctcgcgcagcttctgctggatctccgg 451
Query: 722 gtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgc 781
||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||
Sbjct: 450 gtggttcaccagctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggctgc 391
Query: 782 gacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 gacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctttc 331
Query: 842 ggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttctt 901
||| || |||||||| |||||||||||| ||||||||| |||| ||| | ||| |||
Sbjct: 330 ggcttccaggatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctcctt 271
Query: 902 gcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggca 961
||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| | |||
Sbjct: 270 gcgctgctggacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgca 211
Query: 962 gcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgta 1021
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 210 gcggttgaggtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgta 151
Query: 1022 ctcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagag 1081
||||||||||| || ||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 150 gtcgaagctctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaagag 91
Query: 1082 cgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacat 1141
||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cgggtcggccacggtctcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacat 31
Query: 1142 cat 1144
|||
Sbjct: 30 cat 28
>gb|AV913914.1|AV913914 AV913914 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23l19 5', mRNA sequence
Length = 561
Score = 573 bits (289), Expect = e-162
Identities = 475/537 (88%)
Strand = Plus / Minus
Query: 492 aaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgagcttgccg 551
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct: 561 aaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcgagcttggca 502
Query: 552 tcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggagcgtctcc 611
||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 501 tcgctgaggttcatgtgcggcaccaggagcgggatggccatgcggaggcggagcgtctcc 442
Query: 612 ttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtcacaggcacgccg 671
|| |||| || ||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 441 ttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtcaccggcgtgcca 382
Query: 672 gcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccgggtggttcacc 731
| ||||||||| | | ||| |||||| || ||||| |||||||| ||||||||||||||
Sbjct: 381 gggcccagcacggcgacgatctcctcgcgcagcttctgctggatctccgggtggttcacc 322
Query: 732 agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatg 791
||||| |||| ||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 321 agctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggctgcgacgttgatg 262
Query: 792 ttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcctcgagg 851
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 261 ttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctttcggcttccagg 202
Query: 852 atgtgatccatggcgcaccggatctcaccagtctgagccatcaccttcttgcgctcctgt 911
||||| |||||||||||| ||||||||| |||| ||| | ||| |||||||| |||
Sbjct: 201 atgtggtccatggcgcacttgatctcacccgtcttctccaacgcctccttgcgctgctgg 142
Query: 912 acgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggcagcggttgagg 971
||||||| ||| ||||| ||||||||||| |||||||||| | |||||||||||||
Sbjct: 141 acgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgcagcggttgagg 82
Query: 972 tagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcgaag 1028
|||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 81 tagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgtagtcgaag 25
>gb|BF260290.3|BF260290 HVSMEf0021J18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0021J18f, mRNA sequence
Length = 834
Score = 559 bits (282), Expect = e-157
Identities = 531/614 (86%)
Strand = Plus / Minus
Query: 420 ttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttgggg 479
|||||||||| |||||||| | ||||| ||||| || || ||| ||| || |||||||
Sbjct: 617 ttctcctccttgaggaagcgttggggcctgaacttgttggcgcgccccccccgcttgggg 558
Query: 480 tcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccg 539
|||||||| ||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||
Sbjct: 557 tcgttggcaaggaaccaggcgttgccgaggatcttggattcggcggggatgttgtaaccg 498
Query: 540 gcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcagg 599
||||||||| | ||| | ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct: 497 gcgagcttggcatcgcttaggttcatgtgcggcaccaggagcgggatggccatgcggagg 438
Query: 600 cggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgtc 659
|||||||||||||| |||| || ||| ||||||||||||||||| |||||||||||||||
Sbjct: 437 cggagcgtctccttcacgacggactgcaggtaggggaggcgctccaggtccggctccgtc 378
Query: 660 acaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggcc 719
| ||| ||| | ||||||||| | | ||| |||||| || ||||| |||||||| ||
Sbjct: 377 tccggcgtgccagggcccagcacggcgacgatctcctcgcgcagcttctgctggatctcc 318
Query: 720 gggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||
Sbjct: 317 gggtggttcaccagctccgcgaggccccactcgatcgaccacagcgtcgtctcaatggct 258
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctc 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctt 198
Query: 840 tcggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttc 899
||||| || |||||||| |||||||||||| ||||||||| |||| ||| | ||| |
Sbjct: 197 tcggcttccaggatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctcc 138
Query: 900 ttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtgg 959
||||||| ||| ||||||| ||| ||||| | |||||| |||||||||| | |
Sbjct: 137 ttgcgctgctggacgaagtggtcttcgaattattacatgcgcttggtcttgaggttggtg 78
Query: 960 cagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttg 1019
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 77 cagcggttgaggtagcggcggaggaaggggcggagtacggggatgaagtcgccgtagttg 18
Query: 1020 tactcgaagctctg 1033
|| |||||||||||
Sbjct: 17 tagtcgaagctctg 4
>gb|AV921527.1|AV921527 AV921527 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23l19 3', mRNA sequence
Length = 598
Score = 545 bits (275), Expect = e-153
Identities = 374/407 (91%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 192 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 251
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 252 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 311
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 312 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 371
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 372 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 431
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 432 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 491
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 492 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 551
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggc 589
|||||| | ||| ||||||||||||| || ||||| |||||||||||
Sbjct: 552 agcttggcatcgctgaggttcatgtgcggcaccaggagcgggatggc 598
>gb|AV922603.1|AV922603 AV922603 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18n15 3', mRNA sequence
Length = 615
Score = 545 bits (275), Expect = e-153
Identities = 374/407 (91%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 209 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 268
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 269 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 328
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 329 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 388
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 389 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 448
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 449 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 508
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 509 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 568
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggc 589
|||||| | ||| ||||||||||||| || ||||| |||||||||||
Sbjct: 569 agcttggcatcgctgaggttcatgtgcggcaccaggagcgggatggc 615
>gb|BF620285.2|BF620285 HVSMEc0019F06f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0019F06f, mRNA sequence
Length = 688
Score = 535 bits (270), Expect = e-150
Identities = 419/469 (89%)
Strand = Plus / Minus
Query: 1205 gtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacctt 1264
|||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct: 540 gtcctccaccaccagccgggcctcctcctcccaccccacgcggttntgcgccaccacctt 481
Query: 1265 gttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtacac 1324
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 480 gttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtacac 421
Query: 1325 cgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtgcg 1384
|||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct: 420 cgtgaacaccatgtcctgtcccttgccggtgaagatgtcgaagacgacgttgcgggtgcg 361
Query: 1385 ggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgacac 1444
|||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| | || ||
Sbjct: 360 ggagccgaactcgacgccctgggtgtggaggacctccttggcgagctcggggctggagac 301
Query: 1445 caccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccat 1504
|||||||||||||| ||||||||||| || ||||| | |||||||||||||| ||||
Sbjct: 300 gaccaccaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgcttggccag 241
Query: 1505 gacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacggg 1564
| | | ||||||||||||||| ||||||||||| |||||||||||||| || || | |||
Sbjct: 240 gcccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagttgccgacgatggg 181
Query: 1565 ggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcgat 1624
|||||| | ||| || |||||||||||| | |||||||||| |||||||| ||||||||
Sbjct: 180 ggcgccggaggggccgggtgggaggcggaagcgcttgccggcgagcttggctacggcgat 121
Query: 1625 ggccaccacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
||||| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 120 ggccagcaccgccgcggcgaagaggcccagcagggccttctccaggagg 72
Score = 123 bits (62), Expect = 2e-026
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 1057 tgagcgccttgagcttgttgaagagcgggtcgtgctcgctgtcgaaccggcggtcgaaca 1116
||||||||||||||| ||| |||||||||||| | || | |||||||||||||||||||
Sbjct: 688 tgagcgccttgagctggttaaagagcgggtcggccacggtctcgaaccggcggtcgaaca 629
Query: 1117 tgatgcggaacatgtcgttgtacatcatcagctg 1150
|||||||||||||||||||||||||||| |||||
Sbjct: 628 tgatgcggaacatgtcgttgtacatcatgagctg 595
>gb|AJ436646.1|AJ436646 AJ436646 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200035H01F1, mRNA sequence
Length = 621
Score = 533 bits (269), Expect = e-150
Identities = 368/401 (91%)
Strand = Plus / Minus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 403 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 344
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 343 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 284
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 283 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 224
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 223 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 164
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 163 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 104
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 103 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 44
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccagcagcgg 583
|||||| | ||| ||||||||||||| || ||||| |||||
Sbjct: 43 agcttggcatcgctgaggttcatgtgcggcaccaggagcgg 3
>gb|BI778834.2|BI778834 EBro01_SQ001_L02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_L02 5', mRNA sequence
Length = 537
Score = 533 bits (269), Expect = e-150
Identities = 416/465 (89%)
Strand = Plus / Minus
Query: 1209 tccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccaccttgttg 1268
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 537 tccaccaccagccgggcctcctcctcccaccccacgcggttctgcgccaccaccttgttg 478
Query: 1269 gtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtacaccgtg 1328
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtacaccgtg 418
Query: 1329 aacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtgcgggag 1388
|||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 417 aacaccatgtcctgtcccttgccggtgaagatgtcgaagacgacgttgcgggtgcgggag 358
Query: 1389 ccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgacaccacc 1448
|||||||| |||||||| |||||||| ||||||||||| ||||| ||| | || || |||
Sbjct: 357 ccgaactcgacgccctgggtgtggaggacctccttggcgagctcggggctggagacgacc 298
Query: 1449 accaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccatgaca 1508
||||||||||| ||||||||||| || ||||| | |||||||||||||| |||| | |
Sbjct: 297 accaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgcttggccaggccc 238
Query: 1509 aacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacgggggcg 1568
| ||||||||||||||| ||||||||||| |||||||||||||| || || | |||||||
Sbjct: 237 atcaggttgcggtggttgaggtcgtcgccgacctgcagccagttgccgacgatgggggcg 178
Query: 1569 cccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcgatggcc 1628
|| | ||| || |||||||||||| | |||||||||| |||||||| ||||||||||||
Sbjct: 177 ccggaggggccgggtgggaggcggaagcgcttgccggcgagcttggctacggcgatggcc 118
Query: 1629 accacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 117 agcaccgccgcggcgaagaggcccagcagggccttctccaggagg 73
>gb|BJ467535.1|BJ467535 BJ467535 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25l03 3', mRNA sequence
Length = 568
Score = 531 bits (268), Expect = e-149
Identities = 367/400 (91%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 169 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 228
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 229 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 288
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 289 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 348
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 349 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 408
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 409 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 468
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 469 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 528
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccagcagcg 582
|||||| | ||| ||||||||||||| || ||||| ||||
Sbjct: 529 agcttggcatcgctgaggttcatgtgcggcaccaggagcg 568
>gb|BM817083.1|BM817083 HC01F04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC01F04_T3.ab1 similar to Steroid
17-alpha-monooxygenase,Unspecific monooxygenase, mRNA
sequence
Length = 786
Score = 529 bits (267), Expect = e-149
Identities = 515/585 (88%), Gaps = 11/585 (1%)
Strand = Plus / Minus
Query: 221 gatctggttgctgaactggccgggcttctccgtggtgtcgatcttgtccagccccggcgg 280
||||||||||||||||| | || || || |||||||||||||||||| |||||| |||
Sbjct: 586 gatctggttgctgaactcccgtggtttttcggtggtgtcgatcttgtcctgccccgccgg 527
Query: 281 cggcagcagctgga-agttctgcaccagccggccc-agg-gtgatgcc-gatgataggca 336
||||||||||| || |||| |||||||| | | || ||| |||||||| |||||| ||||
Sbjct: 526 cggcagcagctnganagttttgcaccaggctgtccgaggcgtgatgccngatgatgggca 467
Query: 337 gc-gcgagga-tgatcccaggg-cagctccggc-ggccgacccc--aaagggcacgaagc 390
|| ||||||| ||||||| ||| ||||||| || |||||||| | |||||||||||| |
Sbjct: 466 gccgcgaggaatgatcccgggggcagctcccgccggccgaccgccgaaagggcacgaacc 407
Query: 391 ggaagtc-gttgccgtgggcctccacggacttctcctcctccaggaagcgctcgggccgg 449
||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |
Sbjct: 406 ggaagtcngttgccgtgggcctcgacggacttctcctcctcgaggaagcgctcgggcctg 347
Query: 450 aactcgtcgggccgcacccacctcttggggtcgttggcgaggaaccaggcattgacgagg 509
|||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 346 aactcgtcggcgcgcacccaccgcttggggtcgttggcgaggaaccaggcgttgacgagg 287
Query: 510 atcttggactcggcggggatgtcgtagccggcgagcttgccgtcgttgaggttcatgtgg 569
|||||||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||
Sbjct: 286 atcttggattcggcggggatgtcgtaaccggcgagcttggcatcgctgaggttcatgtgc 227
Query: 570 gggaccagcagcgggatggccatgcgcaggcggagcgtctccttgacgatggcctgaagg 629
|| ||||| ||||||||||||||||| ||||||||||||||||| |||| || ||| |||
Sbjct: 226 ggcaccaggagcgggatggccatgcggaggcggagcgtctccttcacgacggactgcagg 167
Query: 630 taggggaggcgctcgaggtccggctccgtcacaggcacgccggcgcccagcaccgaggcg 689
|||||||||||||| ||||||||||||||||| ||| ||| | ||||||||| | | ||
Sbjct: 166 taggggaggcgctccaggtccggctccgtcaccggcgtgccagggcccagcacggcgacg 107
Query: 690 agctcctcccggagcttgtgctggatggccgggtggttcaccagctcggcgatgccccac 749
| |||||| || ||||| |||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 106 atctcctcgcgcagcttctgctggatctccgggtggttcaccagctccgcgaggccccac 47
Query: 750 tcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatgttc 794
|||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 46 tcgatcgaccacagcgtcgtctcaatggctgcgacgttgatgttc 2
>gb|BJ465891.1|BJ465891 BJ465891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27m08 3', mRNA sequence
Length = 577
Score = 529 bits (267), Expect = e-149
Identities = 363/395 (91%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 180 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 239
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 240 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 299
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 300 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 359
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 360 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 419
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 420 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 479
Query: 483 ttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcg 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 480 ttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcg 539
Query: 543 agcttgccgtcgttgaggttcatgtgggggaccag 577
|||||| | ||| ||||||||||||| || |||||
Sbjct: 540 agcttggcatcgctgaggttcatgtgcggcaccag 574
>gb|BE216506.2|BE216506 HV_CEb0010K21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010K21f, mRNA sequence
Length = 702
Score = 527 bits (266), Expect = e-148
Identities = 415/465 (89%)
Strand = Plus / Minus
Query: 1209 tccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccaccttgttg 1268
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 540 tccaccaccagccgggcctcctcctcccaccccacgcggttntgcgccaccaccttgttg 481
Query: 1269 gtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtacaccgtg 1328
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtacaccgtg 421
Query: 1329 aacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtgcgggag 1388
|||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 420 aacaccatgtcctgtcccttgccggtgaagatgtcgaagacgacgttgcgggtgcgggag 361
Query: 1389 ccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgacaccacc 1448
|||||||| |||||||| |||||||| ||||||||||| ||||| ||| | || || |||
Sbjct: 360 ccgaactcgacgccctgggtgtggaggacctccttggcgagctcggggctggagacgacc 301
Query: 1449 accaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccatgaca 1508
||||||||||| ||||||||||| || ||||| | |||||||||||||| |||| | |
Sbjct: 300 accaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgcttggccaggccc 241
Query: 1509 aacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacgggggcg 1568
| ||||||||||||||| ||||||||||| |||||||||||||| || || | |||||||
Sbjct: 240 atcaggttgcggtggttgaggtcgtcgccgacctgcagccagttgccgacgatgggggcg 181
Query: 1569 cccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcgatggcc 1628
|| | ||| || |||||||||||| | |||||||||| |||||||| ||||||||||||
Sbjct: 180 ccggaggggccgggtgggaggcggaagcgcttgccggcgagcttggctacggcgatggcc 121
Query: 1629 accacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 120 agcaccgccgcggcgaagaggcccagcagggccttctccaggagg 76
>gb|AL505149.1|AL505149 AL505149 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I21V 5', mRNA sequence
Length = 568
Score = 523 bits (264), Expect = e-147
Identities = 454/518 (87%)
Strand = Plus / Minus
Query: 1053 gcgttgagcgccttgagcttgttgaagagcgggtcgtgctcgctgtcgaaccggcggtcg 1112
||||||||||||||||||| |||||||||||||||| | || | |||||||||||||||
Sbjct: 546 gcgttgagcgccttgagctggttgaagagcgggtcggccacggtctcgaaccggcggtcg 487
Query: 1113 aacatgatgcggaacatgtcgttgtacatcatcagctggaggcggcggcggagcacgacg 1172
|||||||||||||||||||||||||||||||| ||||| || | ||| || | ||| |||
Sbjct: 486 aacatgatgcggaacatgtcgttgtacatcatgagctgcagcctgcgtcgcaccaccacg 427
Query: 1173 ccgccggccgcggcctcggggtccttcctcacgtcctccaccaccagccgggcctcctcc 1232
|| || ||| ||| | ||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 426 cccttggtcgccgccgccgggtcggccctgaggtcctccaccaccagccgggcctcctcc 367
Query: 1233 tcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatgatg 1292
| |||||| ||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct: 366 tnccaccccangcggttctgcgccaccaccttgttggtgaagaagggcaccgtcatgatc 307
Query: 1293 cgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgccc 1352
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 306 cgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgtcccttgccg 247
Query: 1353 gtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtgg 1412
|||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 246 gtgaagatgtcgaagacgacgttgcgggtgcgggagccgaactcgacgccctgggtgtgg 187
Query: 1413 agcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgcgc 1472
|| ||||||||||| ||||| ||| | || || |||||||||||||| |||||||||||
Sbjct: 186 aggacctccttggcgagctcggggctggagacgaccaccaggttgcggacgcccatgcgg 127
Query: 1473 agcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggtcg 1532
|| ||||| | |||||||||||||| |||| | | | ||||||||||||||| ||||||
Sbjct: 126 aggaggaacacctcgccgaaccgcttggccaggcccatcaggttgcggtggttgaggtcg 67
Query: 1533 tcgcccacctgcagccagtttcccaccacgggggcgcc 1570
||||| |||||||||||||| || || | |||||||||
Sbjct: 66 tcgccgacctgcagccagttgccgacgatgggggcgcc 29
>gb|BF258169.3|BF258169 HVSMEf0014P23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0014P23f, mRNA sequence
Length = 574
Score = 492 bits (248), Expect = e-137
Identities = 484/563 (85%)
Strand = Plus / Minus
Query: 588 gccatgcgcaggcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgagg 647
|||||||| || ||||||||||||| | | || ||| |||||||| |||||||| |||
Sbjct: 574 gccatgcggagcgggagcgtctccttcccaacggactgcaggtagggnaggcgctccagg 515
Query: 648 tccggctccgtcacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttg 707
|||||||||||||| ||| ||| | ||||||||| | | ||| |||||| || |||||
Sbjct: 514 tccggctccgtcaccggcgtgccagggcccagcacggcgacgatctcctcgcgcagcttc 455
Query: 708 tgctggatggccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtc 767
|||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 454 tgctggatctccgggtggttcaccagctccgcgaggccccactcgatcgaccacagcgtc 395
Query: 768 gtctcgatcgctgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatc 827
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtctcaatggctgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatc 335
Query: 828 tcgcccttcctctcggcctcgaggatgtgatccatggcgcaccggatctcaccagtctga 887
||||||||||| ||||| || |||||||| |||||||||||| ||||||||| ||||
Sbjct: 334 tcgcccttcctttcggcttccaggatgtggtccatggcgcacttgatctcacccgtcttc 275
Query: 888 gccatcaccttcttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtc 947
||| | ||| |||||||| ||| ||||||| ||| ||||| ||||||||||| |||
Sbjct: 274 tccaacgcctccttgcgctgctggacgaagtggtcttcgaacaccttcatgcgcttggtc 215
Query: 948 ttgaggtcgtggcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaag 1007
||||||| | ||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 214 ttgaggttggtgcagcggttgaggtagcggcggaggaaggggcggaggacggggatcaag 155
Query: 1008 tcgccgtagttgtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttg 1067
|||||||||||||| ||||||||||| || ||| ||||||||| |||||||||||| ||
Sbjct: 154 tcgccgtagttgtagtcgaagctctgggagaggatgctgcgctcggcgttgagcgccctg 95
Query: 1068 agcttgttgaagagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaac 1127
|||| | || ||||||||||| | || | | || ||||||||| ||||||||| || ||
Sbjct: 94 agctggctgtagagcgggtcggccgcggtctagatccggcggtccaacatgatgtggcac 35
Query: 1128 atgtcgttgtacatcatcagctg 1150
||||||||||||||||| |||||
Sbjct: 34 atgtcgttgtacatcatgagctg 12
>gb|BI777730.2|BI777730 EBro08_SQ001_K12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_K12 5', mRNA sequence
Length = 380
Score = 492 bits (248), Expect = e-137
Identities = 332/360 (92%)
Strand = Plus / Minus
Query: 252 gtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcaccagccgg 311
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 378 gtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgcaccaggcgt 319
Query: 312 cccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccggcggccg 371
|| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 ccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctccggcggccg 259
Query: 372 accccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctcctcctcc 431
|| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 258 acgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttctcctcctcg 199
Query: 432 aggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgttggcgagg 491
|||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 198 aggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcgttggcgagg 139
Query: 492 aaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgagcttgccg 551
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct: 138 aaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccggcgagcttggca 79
Query: 552 tcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggagcgtctcc 611
||| ||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 78 tcgctgaggttcatgtgcggcaccaggagcggcatggccatgcggaggcggagcgtctcc 19
>gb|BI960006.1|BI960006 HVSMEn0022N09f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022N09f,
mRNA sequence
Length = 626
Score = 484 bits (244), Expect = e-135
Identities = 394/444 (88%)
Strand = Plus / Minus
Query: 1230 tcctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatg 1289
||||||||||| ||||||| || |||||||||||||||||||||||||| || ||||||
Sbjct: 517 tcctcccaccccacgcggttatgcgccaccaccttgttggtgaagaagggcaccgtcatg 458
Query: 1290 atgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttg 1349
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 457 atccgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgtcccttg 398
Query: 1350 cccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtg 1409
|| |||||||||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct: 397 ccggtgaagatgtcgaagacgacgttgcgggtgcgggagccgaactcgacgccctgggtg 338
Query: 1410 tggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatg 1469
||||| ||||||||||| ||||| ||| | || || |||||||||||||| |||||||||
Sbjct: 337 tggaggacctccttggcgagctcggggctggagacgaccaccaggttgcggacgcccatg 278
Query: 1470 cgcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcagg 1529
|| || ||||| | |||||||||||||| |||| | | | ||||||||||||||| |||
Sbjct: 277 cggaggaggaacacctcgccgaaccgcttggccaggcccatcaggttgcggtggttgagg 218
Query: 1530 tcgtcgcccacctgcagccagtttcccaccacgggggcgcccgggggccccggtgggagg 1589
|||||||| |||||||||||||| || || | ||||||||| | ||| || |||||||||
Sbjct: 217 tcgtcgccgacctgcagccagttgccgacgatgggggcgccggaggggccgggtgggagg 158
Query: 1590 cggtaccgcttgccggtcagcttggccacggcgatggccaccacagccgcggcgaacagg 1649
||| | |||||||||| |||||||| ||||||||||||| ||| ||||||||||| |||
Sbjct: 157 cggaagcgcttgccggcgagcttggctacggcgatggccagcaccgccgcggcgaagagg 98
Query: 1650 cccagcagggccttctctaggagg 1673
||||||||||||||||| ||||||
Sbjct: 97 cccagcagggccttctccaggagg 74
>gb|BQ471406.1|BQ471406 HV02F12r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F12
5-PRIME, mRNA sequence
Length = 457
Score = 468 bits (236), Expect = e-130
Identities = 374/420 (89%)
Strand = Plus / Minus
Query: 1254 gccaccaccttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtgg 1313
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct: 457 gccaccaccttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtgg 398
Query: 1314 tcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacg 1373
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct: 397 tcgccgtacaccgtgaacaccatgtcctgtcccttgccggtgaagatgtcgaagacgacg 338
Query: 1374 ttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttggccagctcc 1433
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct: 337 ttgcgggtgcgggagccgaactcgacgccctgggtgtggaggacctccttggcgagctcg 278
Query: 1434 ggggtcgacaccaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaac 1493
||| | || || |||||||||||||| ||||||||||| || ||||| | |||||||||
Sbjct: 277 gggctggagacgaccaccaggttgcggacgcccatgcggaggaggaacacctcgccgaac 218
Query: 1494 cgcttcgccatgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagttt 1553
||||| |||| | | | ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 217 cgcttggccaggcccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagttg 158
Query: 1554 cccaccacgggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttg 1613
|| || | ||||||||| | ||| || |||||||||||| | |||||||||| ||||||
Sbjct: 157 ccgacgatgggggcgccggaggggccgggtgggaggcggaagcgcttgccggcgagcttg 98
Query: 1614 gccacggcgatggccaccacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
|| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 97 gctacggcgatggccagcaccgccgcggcgaagaggcccagcagggccttctccaggagg 38
>gb|BQ665478.1|BQ665478 HX03M12u HX Hordeum vulgare subsp. vulgare cDNA clone HX03M12
3-PRIME, mRNA sequence
Length = 538
Score = 466 bits (235), Expect = e-129
Identities = 310/335 (92%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 203 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 262
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 263 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 322
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 323 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 382
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 383 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 442
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcg 482
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 443 tcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggtcg 502
Query: 483 ttggcgaggaaccaggcattgacgaggatcttgga 517
||||||||||||||||| |||||||||||||||||
Sbjct: 503 ttggcgaggaaccaggcgttgacgaggatcttgga 537
>gb|BQ767330.1|BQ767330 EBro08_SQ008_H18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_H18 5', mRNA sequence
Length = 457
Score = 464 bits (234), Expect = e-129
Identities = 391/442 (88%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 404 gtgggcctccacggacttctcctcctccaggaagcgctcgggccggaactcgtcgggccg 463
||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||| ||
Sbjct: 457 gtgggcctcgacggacttctcctcctcgaggaagcactcgggcttgaactcgtcggcgcg 398
Query: 464 cacccacctcttggggtcgttggcgaggaaccaggcattgacgaggatcttggactcggc 523
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 397 cacccaccgcttggggtcgttggcgaggaaccaggcgttgacgaggatcttggattcggc 338
Query: 524 ggggatgtcgtagccggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgg 583
|||||||||||| |||||||||||| | ||| ||||||||||||| || ||||| |||||
Sbjct: 337 ggggatgtcgtaaccggcgagcttggcatcgctgaggttcatgtgcggcaccaggagcgg 278
Query: 584 gatggccatgcgcaggcggagcgtctccttgacgatggcctgaaggtaggggaggcgctc 643
|||||||||||| ||||||||||||||||| |||| || ||| |||||||||||||||||
Sbjct: 277 gatggccatgcggaggcggagcgtctccttcacgacggactgcaggtaggggaggcgctc 218
Query: 644 gaggtccggctccgtcacaggcacgccggcgcccagcaccgaggcgagctcctcccggag 703
||||||||||||||||| ||| ||| | ||||||||| | | ||| |||||| || ||
Sbjct: 217 caggtccggctccgtcaccggcgtgccagggcccagcacggcgacgatctcctcgcgcag 158
Query: 704 cttgtgctggatggccgggtggttcaccagctcggcgatgccccactcgatcgaccacag 763
||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 157 cttctgctggatctccgggtggttcaccagctccgcgaggccccactcgatcgaccacag 98
Query: 764 tgtcgtctcgatcgctgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggtt 823
|||||||| || | ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 97 cgtcgtctcaatgggtgcgacgttgatgttcttcccgatgcagaggacgctgtcgtggtc 38
Query: 824 gat-ctcgcccttcctctcggc 844
||| |||||||||||| |||||
Sbjct: 37 gatcctcgcccttcctttcggc 16
>gb|BF257476.2|BF257476 HVSMEf0013A08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0013A08f, mRNA sequence
Length = 493
Score = 412 bits (208), Expect = e-113
Identities = 328/368 (89%)
Strand = Plus / Minus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 492 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctttcg 433
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttcttg 902
|| || |||||||| |||||||||||| ||||||||| |||| ||| | ||| ||||
Sbjct: 432 gcttccaggatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctccttg 373
Query: 903 cgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggcag 962
|||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| | ||||
Sbjct: 372 cgctgctggacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgcag 313
Query: 963 cggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtac 1022
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 cggttgaggtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgtag 253
Query: 1023 tcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagc 1082
||||||||||| || ||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 252 tcgaagctctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaagagc 193
Query: 1083 gggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatc 1142
|||||| | || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gggtcggccacggtctcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatc 133
Query: 1143 atcagctg 1150
|| |||||
Sbjct: 132 atgagctg 125
Score = 111 bits (56), Expect = 8e-023
Identities = 95/108 (87%)
Strand = Plus / Minus
Query: 1445 caccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccat 1504
||||||||||||||| ||||||||||| || ||||| | |||||||||||||| ||||
Sbjct: 112 caccaccaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgcttggccag 53
Query: 1505 gacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtt 1552
| | | ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 52 gcccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagtt 5
>gb|BF261518.2|BF261518 HV_CEa0001H23f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001H23f, mRNA sequence
Length = 602
Score = 402 bits (203), Expect = e-110
Identities = 362/415 (87%)
Strand = Plus / Minus
Query: 1259 caccttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgcc 1318
||||||| |||| |||||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 502 caccttgctggtaaagaagggcactgtcatgatcagccgattcttgcgccagtggtcgcc 443
Query: 1319 gtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcg 1378
||||||||||||| |||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 442 gtacaccgtgaaccccatgtcctgtcccttgccggttaagatgtcgaacacgacgttgcg 383
Query: 1379 ggtgcgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggt 1438
||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| |
Sbjct: 382 ggtgcgggagccgaactggacgccctgggtgtggaggacctccttggcgagctcggggct 323
Query: 1439 cgacaccaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgctt 1498
|| || |||||||||||||| ||||||||||| || ||||| | ||||||||||||||
Sbjct: 322 ggatacgaccaccaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgctt 263
Query: 1499 cgccatgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccac 1558
|||| | | | ||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 262 ggccaggcccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagttgccgac 203
Query: 1559 cacgggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccac 1618
| ||||||||| | ||| || |||||||||||| | |||||||||| |||||||| ||
Sbjct: 202 gatgggggcgccggaggggccgggtgggaggcggaagcgcttgccggcgagcttggctac 143
Query: 1619 ggcgatggccaccacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 142 ggcgatggccagcaccgccgcggcgaagaggcccagcagggccttctccaggagg 88
>gb|BG308974.1|BG308974 HVSMEc0001C17f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0001C17f, mRNA sequence
Length = 780
Score = 391 bits (197), Expect = e-107
Identities = 401/469 (85%)
Strand = Plus / Minus
Query: 1205 gtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacctt 1264
||||||||||||||||| ||||||||||||||||||| | ||||| || |||||||||||
Sbjct: 499 gtcctccaccaccagcctggcctcctcctcccacccgacacggttttgtgccaccacctt 440
Query: 1265 gttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtacac 1324
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 439 gttggtgaagaagggcaccgtcatgatacgccgcatcttgcgccagtggtcgccgtagac 380
Query: 1325 cgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtgcg 1384
||||||||||||||||| || ||||| |||||||||||||| || ||||| ||||||||
Sbjct: 379 agtgaacaccatgtcctggcctttgccggtgaagatgtcgaagacgacgttacgggtgcg 320
Query: 1385 ggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgacac 1444
||||||||||| ||||| || |||||||| ||||||||||| ||||| ||| | || ||
Sbjct: 319 agagccgaactcgacgccttgggtgtggaggacctccttggcgagctcggggctggagac 260
Query: 1445 caccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccat 1504
|| ||||||||||| ||||||||||||| ||||| | |||||||| ||||| |||||
Sbjct: 259 gacaaccaggttgcgggcgcccatgcgcaggaggaacacctcgccgaaacgcttggccat 200
Query: 1505 gacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacggg 1564
| | | ||||||||||| || ||||| |||||| |||| |||||||| || || | ||
Sbjct: 199 gcccatgaggttgcggtgattgaggtcatcgcccccctggagccagttgccgacgatcgg 140
Query: 1565 ggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcgat 1624
|||||| | ||||||||| || || ||| | ||||||||||| |||||||| || |||||
Sbjct: 139 ggcgccggagggccccgggggcagccggaagcgcttgccggtgagcttggcgaccgcgat 80
Query: 1625 ggccaccacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
||| | || ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 79 ggcgagcagcgccgccgcgaagaggcccaggagggccttctccaggagg 31
Score = 198 bits (100), Expect = 4e-049
Identities = 187/216 (86%)
Strand = Plus / Minus
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||||||||| || |||||||||||||| || |||| ||| |||||||||||||||||
Sbjct: 742 gcagcggttgagatacccgcggaggaagggccgaagcatgggcatgaagtcgccgtagtt 683
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
||| || ||||| || || || ||||||||| |||||||| ||| |||||||||||||
Sbjct: 682 gtagtctaagctatgggagagaatgctgcgctcggcgttgagagccctgagcttgttgaa 623
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gagcgggtcggcgaggctctcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 563
Query: 1139 catcatcagctggaggcggcggcggagcacgacgcc 1174
|||||| ||||| || | |||||||| ||| |||||
Sbjct: 562 catcatgagctgcagcctgcggcggatcaccacgcc 527
>gb|BI779253.2|BI779253 EBro01_SQ003_H11_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_H11 5', mRNA sequence
Length = 489
Score = 391 bits (197), Expect = e-107
Identities = 413/485 (85%)
Strand = Plus / Minus
Query: 447 cggaactcgtcgggccgcacccacctcttggggtcgttggcgaggaaccaggcattgacg 506
||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct: 489 cggaactcgtcggcgcgcacccagcgcttggggtcgttggcgaggaaccaggcgttgacg 430
Query: 507 aggatcttggactcggcggggatgtcgtagccggcgagcttgccgtcgttgaggttcatg 566
|||||||||||||| ||||||||||||||||| | ||||||| | || ||||||||||||
Sbjct: 429 aggatcttggactcagcggggatgtcgtagccagtgagcttggcatccttgaggttcatg 370
Query: 567 tgggggaccagcagcgggatggccatgcgcaggcggagcgtctccttgacgatggcctga 626
||||| || || || |||||| ||||||| |||||||| || |||||||||| ||||||
Sbjct: 369 tggggcacgaggagtgggatgcccatgcggaggcggagggtttccttgacgacggcctgc 310
Query: 627 aggtaggggaggcgctcgaggtccggctccgtcacaggcacgccggcgcccagcaccgag 686
||||| ||||||||||| ||||| ||||||||||| | | ||| || ||||| | |
Sbjct: 309 aggtaagggaggcgctctaggtctggctccgtcaccgctgcatcgggccctagcacggcg 250
Query: 687 gcgagctcctcccggagcttgtgctggatggccgggtggttcaccagctcggcgatgccc 746
|||| ||||| |||||||| ||||||| ||||||||||||||||||| || | |||
Sbjct: 249 gcgatctcctgacggagctttgactggatgtccgggtggttcaccagctctgcaactccc 190
Query: 747 cactcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatgttctcgacgatgtag 806
||||||||||||||||| |||||||| || ||| || ||||||||||||| | |||||
Sbjct: 189 cactcgatcgaccacagggtcgtctcaattgctccgccgttgatgttctccccaatgtat 130
Query: 807 aggacgttgtcgtggttgatctcgcccttcctctcggcctcgaggatgtgatccatggcg 866
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct: 129 aggacgttgtcgtggttgatctcacccttccgttcggcctcgaggatgtggtccatggcg 70
Query: 867 caccggatctcaccagtctgagccatcaccttcttgcgctcctgtacgaagttgtcctcg 926
|| | ||||||||| ||| ||| | ||||||||||||| || ||||||| ||||||
Sbjct: 69 catctgatctcaccgttcttctccaacgccttcttgcgctcttggacgaagtcttcctcg 10
Query: 927 aagac 931
|||||
Sbjct: 9 aagac 5
>gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_J15 5', mRNA sequence
Length = 490
Score = 385 bits (194), Expect = e-105
Identities = 338/386 (87%)
Strand = Plus / Minus
Query: 230 gctgaactggccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcag 289
||||||||||||| ||||||||||||||||| ||||||| | || ||||||||| ||
Sbjct: 408 gctgaactggccgcccttctccgtggtgtcgagcttgtcctggccgggcggcggcgagag 349
Query: 290 ctggaagttctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgat 349
| ||||||||| || || ||||| | ||||||||||| ||| |||||||||||||||||
Sbjct: 348 cacgaagttctggacgaggcggccgatggtgatgccgaggatgggcagcgcgaggatgat 289
Query: 350 cccagggcagctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggc 409
|| |||||||||||||||||||| || ||||||| | | | |||||||||||| | |||
Sbjct: 288 gccggggcagctccggcggccgacgccgaagggcaggtacctgaagtcgttgccattggc 229
Query: 410 ctccacggacttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcaccca 469
||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 228 ctccacgtgcttctcctcctccaggaagcgctccggccggaactcgtccggccgcttcca 169
Query: 470 cctcttggggtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggat 529
| || |||| |||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 168 ctgctccgggttgttggcgaggaaccaggcgttgacgaggatcttgctctcggcggggat 109
Query: 530 gtcgtagccggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggc 589
|| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct: 108 gttgtagccggcgagcttggcgtcgtggaggttcatgtggggcaccagcagcgggatggc 49
Query: 590 catgcgcaggcggagcgtctccttga 615
||||||||| || |||||||||||||
Sbjct: 48 catgcgcagccgcagcgtctccttga 23
>gb|BF253649.2|BF253649 HVSMEf0001L18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001L18f, mRNA sequence
Length = 530
Score = 379 bits (191), Expect = e-103
Identities = 306/343 (89%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 502 tgacgaggatcttggactcggcggggatgtcgtagccggcgagcttgccgtcgttgaggt 561
|||||||||||||| | ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 345 tgacgaggatcttgaa-tcggcggggatgtcgtacccggcgagcttggcatcgttgaggt 287
Query: 562 tcatgtgggggaccagcagcgggatggccatgcgcaggcggagcgtctccttgacgatgg 621
||||||| || |||| ||||||||||||||||| || ||||||||||||| |||| ||
Sbjct: 286 tcatgtgcggccccaggagcgggatggccatgcggagcgggagcgtctccttcacgacgg 227
Query: 622 cctgaaggtaggggaggcgctcgaggtccggctccgtcacaggcacgccggcgcccagca 681
||| ||||||||||||||||| ||||||||||||||||| ||| ||| | ||||||||
Sbjct: 226 actgcaggtaggggaggcgctccaggtccggctccgtcaccggcgtgccagggcccagca 167
Query: 682 ccgaggcgagctcctcccggagcttgtgctggatggccgggtggttcaccagctcggcga 741
| | | ||| |||||| || ||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 166 cggcgacgatctcctcgcgcagcttctgctggatctccgggtggttcaccagctccgcga 107
Query: 742 tgccccactcgatcgaccacagtgtcgtctcgatcgctgcgacgttgatgttctcgacga 801
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 106 ggccccactcgatcgaccacagcgtcgtctcaatggctgcgacgttgatgttctcgacga 47
Query: 802 tgtagaggacgttgtcgtggttgatctcgcccttcctctcggc 844
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 46 tgtagaggacgttgtcgtggttgatctcgcccttcctttcggc 4
>gb|BI959752.1|BI959752 HVSMEn0021E03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021E03f,
mRNA sequence
Length = 691
Score = 367 bits (185), Expect = e-100
Identities = 363/420 (86%), Gaps = 2/420 (0%)
Strand = Plus / Minus
Query: 1256 caccaccttgttggtgaagaaggggac-ggtcatgatgcgccg-catcttgcgccagtgg 1313
|||| ||||||||||||||| ||| | ||||||||| || || ||||||||| ||||||
Sbjct: 499 cacccccttgttggtgaagatgggccccggtcatgatccggcggcatcttgcgtcagtgg 440
Query: 1314 tcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacg 1373
| ||||||| ||||||||||||||||||| |||||||| || ||||||||||| || |||
Sbjct: 439 ttgccgtaccccgtgaacaccatgtcctgtcccttgccggtcaagatgtcgaagacgacg 380
Query: 1374 ttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttggccagctcc 1433
|||||||||||||||| |||||| |||||||| |||||||| ||||||||||| |||||
Sbjct: 379 ttgcgggtgcgggagcngaactcgacgccctgggtgtggaggacctccttggcgagctcg 320
Query: 1434 ggggtcgacaccaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaac 1493
||| | || || |||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 319 gggctggagacgaccaccaggttgcggacgcccatgcggaggaggaacccctcgccgaac 260
Query: 1494 cgcttcgccatgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagttt 1553
||||| |||| | | | ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 259 cgcttggccaggcccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagttg 200
Query: 1554 cccaccacgggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttg 1613
|| || | ||||||||| | ||| || |||||||||||| | |||||||||| ||||||
Sbjct: 199 ccgacgatgggggcgccggaggggccgggtgggaggcggaagcgcttgccggcgagcttg 140
Query: 1614 gccacggcgatggccaccacagccgcggcgaacaggcccagcagggccttctctaggagg 1673
|| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 139 gctacggcgatggccagcaccgccgcggcgaagaggcccagcagggccttctccaggagg 80
>gb|BQ767241.1|BQ767241 EBro08_SQ008_I11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_I11 5', mRNA sequence
Length = 492
Score = 361 bits (182), Expect = 5e-098
Identities = 242/262 (92%)
Strand = Plus / Minus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 262 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 203
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 202 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 143
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 142 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 83
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 82 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 23
Query: 423 tcctcctccaggaagcgctcgg 444
|||||||| |||||||||||||
Sbjct: 22 tcctcctcgaggaagcgctcgg 1
>gb|BG345061.2|BG345061 HVSMEg0018H23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018H23f, mRNA sequence
Length = 481
Score = 343 bits (173), Expect = 1e-092
Identities = 233/253 (92%)
Strand = Plus / Minus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 253 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 194
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 193 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 134
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 133 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 74
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttc 422
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 73 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggacttc 14
Query: 423 tcctcctccagga 435
|||||||| ||||
Sbjct: 13 tcctcctcgagga 1
>gb|AJ463481.1|AJ463481 AJ463481 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200025H07F1, mRNA sequence
Length = 240
Score = 333 bits (168), Expect = 1e-089
Identities = 222/240 (92%)
Strand = Plus / Minus
Query: 301 gcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagc 360
||||||| || || || |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 240 gcaccaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagc 181
Query: 361 tccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggact 420
||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 180 tccggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctcgacggact 121
Query: 421 tctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggt 480
|||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 120 tctcctcctcgaggaagcgctcgggcctgaactcgtcggcgcgcacccaccgcttggggt 61
Query: 481 cgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccgg 540
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 60 cgttggcgaggaaccaggcgttgacgaggatcttggattcggcggggatgtcgtaaccgg 1
>gb|AL502425.1|AL502425 AL502425 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I21u 3', mRNA sequence
Length = 554
Score = 331 bits (167), Expect = 4e-089
Identities = 238/261 (91%), Gaps = 1/261 (0%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 260 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 319
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 320 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 379
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 380 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 439
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccac-ggactt 421
||||||||||| || || |||||||| ||||||||||||||||||||||| || || |||
Sbjct: 440 cggcggccgacgccgaanggcacgaaccggaagtcgttgccgtgggcctcgacgggnctt 499
Query: 422 ctcctcctccaggaagcgctc 442
||||||||| |||||||||||
Sbjct: 500 ctcctcctcgaggaagcgctc 520
>gb|AJ433404.1|AJ433404 AJ433404 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200022D10F1, mRNA sequence
Length = 363
Score = 327 bits (165), Expect = 7e-088
Identities = 250/277 (90%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 204 atggtggcatgcttggcgatctggttgctgaactggccgggcttctccgtggtgtcgatc 263
|||||||| |||||| ||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 280 atggtggcgtgcttgaggatatggttgctgaactgccctggcttctcggtggtgtcgatc 221
Query: 264 ttgtccagccccggcggcggcagcagctggaagttctgcaccagccggcccagggtgatg 323
|||||| ||||||||||||||||||||| |||||||||||||| | || || ||||||
Sbjct: 220 ttgtcctgccccggcggcggcagcagctctaagttctgcaccaggtgtccgagcgtgatg 161
Query: 324 ccgatgataggcagcgcgaggatgatcccagggcagctccggcggcc-gaccccaaaggg 382
|||||||| |||||||||||||||||||| ||||||||||||||||| ||| || |||||
Sbjct: 160 ccgatgatgggcagcgcgaggatgatcccggggcagctccggcggccagacgccgaaggg 101
Query: 383 cacgaagcggaagtcgttgccgtgggcctccacggacttctcctcctccaggaagcgctc 442
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 100 cacgaaccggaagtcgttgccgtgggcctcgacggacttctcctcctcgaggaagcgctc 41
Query: 443 gggccggaactcgtcgggccgcacccacctcttgggg 479
||||| ||||||||||| |||||||||| |||||||
Sbjct: 40 gggcctgaactcgtcggcgcgcacccaccgcttgggg 4
>gb|BF261377.2|BF261377 HV_CEa0001C01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001C01f, mRNA sequence
Length = 839
Score = 319 bits (161), Expect = 2e-085
Identities = 377/449 (83%)
Strand = Plus / Minus
Query: 1225 cctcctcctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacgg 1284
|||||||||||||| ||||||| || |||||||||||||||||||||||| | ||||
Sbjct: 526 cctcctcctcccacagtacgcggttgtgcgccaccaccttgttggtgaagaagcgcacgg 467
Query: 1285 tcatgatgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgcc 1344
||||||| | | ||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct: 466 tcatgatccccggcatcttgcgccagtggtcctcgtacaccgtgaacaccatgtcatgtc 407
Query: 1345 ccttgcccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccct 1404
|||||| |||||||||||||| || ||||||||||||||||||| ||||| |||||||
Sbjct: 406 ccttgcgggtgaagatgtcgaagacgacgttgcgggtgcgggagcagaactagacgccct 347
Query: 1405 gcgtgtggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgc 1464
| |||||||| ||||||||| ||||| ||| | |||| |||||||||||||| ||||
Sbjct: 346 gggtgtggaggacctccttgttgagctcggggatggacaagaccaccaggttgcggacgc 287
Query: 1465 ccatgcgcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggt 1524
|||| ||||| ||||| |||||||||||| | ||| | | | |||| |||||||||
Sbjct: 286 ccatacgcaggaggaactcctcgccgaaccgcgtggccgggcccatcaggatgcggtggt 227
Query: 1525 tcaggtcgtcgcccacctgcagccagtttcccaccacgggggcgcccgggggccccggtg 1584
| ||||||||||| |||||||||||||| || || | ||||||||| ||| || ||||
Sbjct: 226 tgaggtcgtcgccgacctgcagccagttgccgacgatgggggcgccgtagggaccgggtg 167
Query: 1585 ggaggcggtaccgcttgccggtcagcttggccacggcgatggccaccacagccgcggcga 1644
| ||||| | |||||||||| ||||||| ||||||||||||| | | || |||||||
Sbjct: 166 gtaggcgtaagcgcttgccggcgagcttggttacggcgatggccagcgccgctgcggcga 107
Query: 1645 acaggcccagcagggccttctctaggagg 1673
| |||||||||||||||||||| ||||||
Sbjct: 106 agaggcccagcagggccttctccaggagg 78
>gb|BE558391.1|BE558391 HV_CEb0017H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017H19f, mRNA sequence
Length = 813
Score = 313 bits (158), Expect = 1e-083
Identities = 218/238 (91%)
Strand = Plus / Minus
Query: 1256 caccaccttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtc 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 caccaccttgttggtgaagaagggcacggtcatgatgcgccgcatcttgcgccagtggtc 329
Query: 1316 gccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 328 gccgtacacggtgaacaccatgtcctggccctcgccggtgaagatgtcgaacaccacgtt 269
Query: 1376 gcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccgg 1435
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct: 268 gcgggtgcgggacccgaactccacgccctgcgtgtgcagcacctcccgcgccagcggcgg 209
Query: 1436 ggtcgacaccaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaac 1493
|| |||||||||||||||||||||| ||||||||| || ||||| | |||||||||
Sbjct: 208 ggacgacaccaccaccaggttgcgctggcccatgcggaggaggaacacctcgccgaac 151
Score = 198 bits (100), Expect = 4e-049
Identities = 180/207 (86%)
Strand = Plus / Minus
Query: 968 gaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcgaa 1027
||||||||| ||||||||||||||||| | | |||| ||||| |||||||||||||||||
Sbjct: 676 gaggtagccccggaggaaggggcggaggatgnggataaagtccccgtagttgtactcgaa 617
Query: 1028 gctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggtc 1087
|||||||| |||||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct: 616 gctctgcgcgaggcggctgcgctcgccgttgagcgcccggaggcggaggaagagcgggtc 557
Query: 1088 gtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatcag 1147
|| | ||| |||||||| |||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 556 gtccatgctctcgaaccgccggtcgaacatgatgcggtacatgttgttgtacatcatgag 497
Query: 1148 ctggaggcggcggcggagcacgacgcc 1174
||| ||| |||||||||||||||||||
Sbjct: 496 ctgcaggtggcggcggagcacgacgcc 470
Score = 75.8 bits (38), Expect = 4e-012
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 1511 caggttgcggtggttcaggtcgtcgcccacctgcagccagtt 1552
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 133 caggttgcggtggttcaggtcgtcgccgacctgcagccagtt 92
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 846 tcgaggatgtgatccatggcgcac 869
|||||||||||||| |||||||||
Sbjct: 809 tcgaggatgtgatcaatggcgcac 786
>gb|BJ465823.1|BJ465823 BJ465823 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27h18 3', mRNA sequence
Length = 426
Score = 313 bits (158), Expect = 1e-083
Identities = 212/230 (92%)
Strand = Plus / Plus
Query: 183 gcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactggccg 242
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 195 gcctcgagtggcttgcagacgatggtggcgtgcttgaggatctggttgctgaactgccct 254
Query: 243 ggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgc 302
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 255 ggcttctcggtggtgtcgatcttgtcctgccccggcggcggcagcagctcgaagttctgc 314
Query: 303 accagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctc 362
||||| || || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 315 accaggcgtccgagcgtgatgccgatgatgggcagcgcgaggatgatcccggggcagctc 374
Query: 363 cggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctc 412
||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 375 cggcggccgacgccgaagggcacgaaccggaagtcgttgccgtgggcctc 424
>gb|BM370693.2|BM370693 EBro04_SQ001_N15_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N15 5', mRNA sequence
Length = 386
Score = 311 bits (157), Expect = 4e-083
Identities = 280/321 (87%)
Strand = Plus / Minus
Query: 1353 gtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtgg 1412
|||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 383 gtgaagatgtcgaagacgacgttgcgggtgcgggagccgaactcgacgccctgggtgtgg 324
Query: 1413 agcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgcgc 1472
|| ||||||||||| ||||| ||| | || || |||||||||||||| |||||||||||
Sbjct: 323 aggacctccttggcgagctcggggctggagacgaccaccaggttgcggacgcccatgcgg 264
Query: 1473 agcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggtcg 1532
|| ||||| | |||||||||||||| |||| | | | ||||||||||||||| ||||||
Sbjct: 263 aggaggaacacctcgccgaaccgcttggccaggcccatcaggttgcggtggttgaggtcg 204
Query: 1533 tcgcccacctgcagccagtttcccaccacgggggcgcccgggggccccggtgggaggcgg 1592
||||| |||||||||||||| || || | ||||||||| | ||| || ||||||||||||
Sbjct: 203 tcgccgacctgcagccagttgccgacgatgggggcgccggaggggccgggtgggaggcgg 144
Query: 1593 taccgcttgccggtcagcttggccacggcgatggccaccacagccgcggcgaacaggccc 1652
| |||||||||| |||||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 143 aagcgcttgccggcgagcttggctacggcgatggccagcaccgccgcggcgaagaggccc 84
Query: 1653 agcagggccttctctaggagg 1673
|||||||||||||| ||||||
Sbjct: 83 agcagggccttctccaggagg 63
>gb|BQ762245.1|BQ762245 EBro01_SQ005_B10_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_B10 5', mRNA sequence
Length = 537
Score = 305 bits (154), Expect = 3e-081
Identities = 292/338 (86%)
Strand = Plus / Minus
Query: 177 ttctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaac 236
||||| |||| ||| ||||||||||||| |||||| || ||| ||||||||||||||||
Sbjct: 338 ttctaagccttgagtggcttgcagacgacggtggcgtggttgcggatctggttgctgaac 279
Query: 237 tggccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaag 296
|| |||||||| |||||||| || ||||||||| |||| |||||||||| |||||||||
Sbjct: 278 tgtccgggcttttccgtggtatcaatcttgtccttccccagcggcggcagtagctggaag 219
Query: 297 ttctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccaggg 356
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 218 ttctgcacaaggcggccgagcgtgatgccgatgatgggcagagcgaggatgattcccggg 159
Query: 357 cagctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacg 416
||||||| || ||||| || |||||||| || |||||||| ||||| | |||||| |||
Sbjct: 158 cagctcctccgaccgacgccgaagggcacaaaccggaagtcattgccattggcctcgacg 99
Query: 417 gacttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttg 476
| | ||||||| || ||||| ||||| |||||||||||||||| |||||||| | ||||
Sbjct: 98 gccctctcctcttcgaggaaccgctccggccggaactcgtcggcgcgcacccagcgcttg 39
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatctt 514
||||||||||||||||||||||| ||||||||||||||
Sbjct: 38 gggtcgttggcgaggaaccaggcgttgacgaggatctt 1
>gb|CA023650.1|CA023650 HZ46P09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46P09
5-PRIME, mRNA sequence
Length = 501
Score = 305 bits (154), Expect = 3e-081
Identities = 289/334 (86%)
Strand = Plus / Minus
Query: 230 gctgaactggccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcag 289
||||||||||||| ||||||||||||||||| ||||||| | || ||||||||| ||
Sbjct: 334 gctgaactggccgcccttctccgtggtgtcgagcttgtcctggccgggcggcggcgagag 275
Query: 290 ctggaagttctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgat 349
| ||||||||| || || ||||| | ||||||||||| ||| |||||||||||||||||
Sbjct: 274 cacgaagttctggacgaggcggccgatggtgatgccgaggatgggcagcgcgaggatgat 215
Query: 350 cccagggcagctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggc 409
|| |||||||||||||||||||| || ||||||| | | | |||||||||||| | |||
Sbjct: 214 gccggggcagctccggcggccgacgccgaagggcaggtacctgaagtcgttgccattggc 155
Query: 410 ctccacggacttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcaccca 469
||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 154 ctccacgtgcttctcctcctccaggaagcgctccggccggaactcgtccggccgcttcca 95
Query: 470 cctcttggggtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggat 529
| || |||| |||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 94 ctgctccgggttgttggcgaggaaccaggcgttgacgaggatcttgctctcggcggggat 35
Query: 530 gtcgtagccggcgagcttgccgtcgttgaggttc 563
|| |||||||||||||||| |||||| |||||||
Sbjct: 34 gttgtagccggcgagcttggcgtcgtggaggttc 1
>gb|CA026572.1|CA026572 HZ56E18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56E18
5-PRIME, mRNA sequence
Length = 425
Score = 303 bits (153), Expect = 1e-080
Identities = 192/205 (93%)
Strand = Plus / Minus
Query: 1256 caccaccttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtc 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 211 caccaccttgttggtgaagaagggcacggtcatgatgcgccgcatcttgcgccagtggtc 152
Query: 1316 gccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 151 gccgtacacggtgaacaccatgtcctggccctcgccggtgaagatgtcgaacaccacgtt 92
Query: 1376 gcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccgg 1435
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct: 91 gcgggtgcgggacccgaactccacgccctgcgtgtgcagcacctcccgcgccagcggcgg 32
Query: 1436 ggtcgacaccaccaccaggttgcgc 1460
|| ||||||||||||||||||||||
Sbjct: 31 ggacgacaccaccaccaggttgcgc 7
Score = 117 bits (59), Expect = 1e-024
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 1076 gaagagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgtt 1135
|||||||||||||| | ||| |||||||| |||||||||||||||||| |||||| |||
Sbjct: 391 gaagagcgggtcgtccatgctctcgaaccgccggtcgaacatgatgcggtacatgttgtt 332
Query: 1136 gtacatcatcagctggaggcggcggcggagcacgacgcc 1174
||||||||| ||||| ||| |||||||||||||||||||
Sbjct: 331 gtacatcatgagctgcaggtggcggcggagcacgacgcc 293
>gb|BF257700.2|BF257700 HVSMEf0013K04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0013K04f, mRNA sequence
Length = 493
Score = 301 bits (152), Expect = 4e-080
Identities = 263/300 (87%)
Strand = Plus / Minus
Query: 851 gatgtgatccatggcgcaccggatctcaccagtctgagccatcaccttcttgcgctcctg 910
|||||| |||||||||||| ||||||||| |||| ||| | ||| |||||||| |||
Sbjct: 487 gatgtggtccatggcgcacttgatctcacccgtcttctccaacgcctccttgcgctgctg 428
Query: 911 tacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtggcagcggttgag 970
||||||| ||| ||||| ||||||||||| |||||||||| | ||||||||||||
Sbjct: 427 gacgaagtggtcttcgaacaccttcatgcgcttggtcttgaggttggtgcagcggttgag 368
Query: 971 gtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcgaagct 1030
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 367 gtagcggcggaggaaggggcggaggacggggatgaagtcgccgtagttgtagtcgaagct 308
Query: 1031 ctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggtcgtg 1090
||| || ||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 307 ctgggagaggatgctgcgctcggcgttgagcgccttgagctggttgaagagcgggtcggc 248
Query: 1091 ctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatcagctg 1150
| || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 247 cacggtctcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatgagctg 188
Score = 109 bits (55), Expect = 3e-022
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 1446 accaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgccatg 1505
|||||||||||||| ||||||||||| || ||||| | |||||||||||||| |||| |
Sbjct: 117 accaccaggttgcggacgcccatgcggaggaggaacacctcgccgaaccgcttggccagg 58
Query: 1506 acaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtt 1552
| | ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 57 cccatcaggttgcggtggttgaggtcgtcgccgacctgcagccagtt 11
>gb|BM370681.2|BM370681 EBro04_SQ001_M14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_M14 5', mRNA sequence
Length = 377
Score = 299 bits (151), Expect = 2e-079
Identities = 274/315 (86%)
Strand = Plus / Minus
Query: 1359 atgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacc 1418
|||||||| || |||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 377 atgtcgaagacgacgttgcgggtgcgggagccgaactcgacgccctgggtgtggaggacc 318
Query: 1419 tccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgcgcagcagg 1478
|||||||| ||||| ||| | || || |||||||||||||| ||||||||||| || |||
Sbjct: 317 tccttggcgagctcggggctggagacgaccaccaggttgcggacgcccatgcggaggagg 258
Query: 1479 aagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggtcgtcgccc 1538
|| | |||||||||||||| |||| | | | ||||||||||||||| |||||||||||
Sbjct: 257 aacacctcgccgaaccgcttggccaggcccatcaggttgcggtggttgaggtcgtcgccg 198
Query: 1539 acctgcagccagtttcccaccacgggggcgcccgggggccccggtgggaggcggtaccgc 1598
|||||||||||||| || || | ||||||||| | ||| || |||||||||||| | |||
Sbjct: 197 acctgcagccagttgccgacgatgggggcgccggaggggccgggtgggaggcggaagcgc 138
Query: 1599 ttgccggtcagcttggccacggcgatggccaccacagccgcggcgaacaggcccagcagg 1658
||||||| |||||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 137 ttgccggcgagcttggctacggcgatggccagcaccgccgcggcgaagaggcccagcagg 78
Query: 1659 gccttctctaggagg 1673
|||||||| ||||||
Sbjct: 77 gccttctccaggagg 63
>gb|BI955765.1|BI955765 HVSMEm0024G17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024G17f, mRNA sequence
Length = 696
Score = 295 bits (149), Expect = 2e-078
Identities = 248/281 (88%)
Strand = Plus / Minus
Query: 317 ggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccggcggccgacccc 376
||||||||||| ||| ||||||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 455 ggtgatgccgaggatgggcagcgcgagcatgatgccgggacagctccggcggccgacgcc 396
Query: 377 aaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctcctcctccaggaa 436
||||||| | | |||||||||||| | |||||||||| ||||||||||||||||||
Sbjct: 395 gaagggcaggtacgtgaagtcgttgccattggcctccacgtgcttctcctcctccaggaa 336
Query: 437 gcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgttggcgaggaacca 496
|||||| |||||||||||||| |||||| |||| || |||| |||||||||||||||
Sbjct: 335 gcgctccggccggaactcgtccggccgcttccactgctccgggttgttggcgaggaacca 276
Query: 497 ggcattgacgaggatcttggactcggcggggatgtcgtagccggcgagcttgccgtcgtt 556
||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 275 ggcgttgacgaggatcttgctctcggcggggatgttgtagccggcgagcttggcgtcgtg 216
Query: 557 gaggttcatgtgggggaccagcagcgggatggccatgcgca 597
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 215 gaggttcatgtggggcaccagcagcgggatggccatgcgca 175
Score = 65.9 bits (33), Expect = 4e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 673 cgcccagcaccgaggcgagctcctcccggagcttgtgctggatggccgggtggttcacca 732
|||||||||||| | | | ||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 99 cgcccagcaccgcgtccatctcgtcccgcagcttctgctggatctccgggtggttcacca 40
Query: 733 gctcggcgatgccccactcgatcg 756
|||| | || |||||||||||||
Sbjct: 39 gctccgngagcccccactcgatcg 16
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 336,269
Number of Sequences: 312970
Number of extensions: 336269
Number of successful extensions: 97268
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97030
Number of HSP's gapped (non-prelim): 189
length of query: 1689
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1670
effective length of database: 169,188,109
effective search space: 282544142030
effective search space used: 282544142030
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)