BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE060120.2|BE060120 HVSMEg0011I12f Hordeum vulgare pre-a... 458 e-127
gb|BF260956.1|BF260956 HVSMEf0023G04f Hordeum vulgare seedl... 444 e-123
gb|AV912784.1|AV912784 AV912784 K. Sato unpublished cDNA li... 398 e-109
gb|AV915960.1|AV915960 AV915960 K. Sato unpublished cDNA li... 394 e-108
gb|BF631171.2|BF631171 HVSMEb0015C20f Hordeum vulgare seedl... 313 5e-084
gb|BG415849.1|BG415849 HVSMEk0008C14f Hordeum vulgare testa... 242 2e-062
gb|BE216096.1|BE216096 HV_CEb0009G14f Hordeum vulgare seedl... 240 7e-062
gb|BI960271.1|BI960271 HVSMEn0024A19f Hordeum vulgare rachi... 220 6e-056
gb|BE455736.3|BE455736 HVSMEg0019G20f Hordeum vulgare pre-a... 190 5e-047
gb|AV917519.1|AV917519 AV917519 K. Sato unpublished cDNA li... 172 1e-041
gb|BG415342.2|BG415342 HVSMEk0006B21f Hordeum vulgare testa... 117 6e-025
gb|BF623318.1|BF623318 HVSMEa0015G04f Hordeum vulgare seedl... 115 3e-024
gb|BI952463.1|BI952463 HVSMEm0006I19f Hordeum vulgare green... 40 0.12
gb|AL506314.1|AL506314 AL506314 Hordeum vulgare Barke devel... 38 0.48
gb|BI948941.1|BI948941 HVSMEl0011J17f Hordeum vulgare spike... 38 0.48
gb|BE231130.2|BE231130 HVSMEg0016P11f Hordeum vulgare pre-a... 38 0.48
gb|BG416440.2|BG416440 HVSMEk0012E14f Hordeum vulgare testa... 38 0.48
gb|BQ470890.1|BQ470890 HX04F17r HX Hordeum vulgare subsp. v... 38 0.48
gb|BM375180.2|BM375180 EBem06_SQ002_J11_R embryo, 21 DPA, n... 38 0.48
gb|BM375933.2|BM375933 EBem06_SQ004_N06_R embryo, 21 DPA, n... 38 0.48
gb|BM370408.2|BM370408 EBro08_SQ004_C05_R root, 3 week, dro... 38 0.48
gb|BQ761000.1|BQ761000 EBro04_SQ001_N03_R root, 3 week, sal... 38 0.48
gb|BU983494.1|BU983494 HA29O21r HA Hordeum vulgare subsp. v... 38 0.48
gb|BU986814.1|BU986814 HF12P19r HF Hordeum vulgare subsp. v... 38 0.48
gb|BU987078.1|BU987078 HF13L21r HF Hordeum vulgare subsp. v... 38 0.48
gb|CA020826.1|CA020826 HZ37P03r HZ Hordeum vulgare subsp. v... 38 0.48
gb|CA022418.1|CA022418 HZ43B19r HZ Hordeum vulgare subsp. v... 38 0.48
gb|CA023939.1|CA023939 HZ47O03r HZ Hordeum vulgare subsp. v... 38 0.48
gb|CA030367.1|CA030367 HX06N13r HX Hordeum vulgare subsp. v... 38 0.48
gb|CA031058.1|CA031058 HX08O08r HX Hordeum vulgare subsp. v... 38 0.48
gb|CA031774.1|CA031774 HX11B15r HX Hordeum vulgare subsp. v... 38 0.48
gb|CB874959.1|CB874959 HX06N13w HX Hordeum vulgare subsp. v... 38 0.48
gb|CB875632.1|CB875632 HX08O08w HX Hordeum vulgare subsp. v... 38 0.48
gb|CK122324.1|CK122324 BES1824102n21 BES1824 Hordeum vulgar... 38 0.48
gb|CK122731.1|CK122731 BES1824105j15 BES1824 Hordeum vulgar... 38 0.48
gb|CK122733.1|CK122733 BES1824105j17 BES1824 Hordeum vulgar... 38 0.48
gb|CK123092.1|CK123092 BES1824102b08 BES1824 Hordeum vulgar... 38 0.48
gb|CK123567.1|CK123567 BES1824104g22 BES1824 Hordeum vulgar... 38 0.48
gb|CK125121.1|CK125121 BES1824106m05 BES1824 Hordeum vulgar... 38 0.48
>gb|BE060120.2|BE060120 HVSMEg0011I12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011I12f, mRNA sequence
Length = 592
Score = 458 bits (231), Expect = e-127
Identities = 409/466 (87%), Gaps = 2/466 (0%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 35 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 94
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| ||||| || ||||||||
Sbjct: 95 caatgctgatacgtatgatagcagttctttccatgtggatggatttgggggctctttggt 154
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 155 tgaattcatggttagagaaactgaaaagctacacgcaaaggttgggagatacaagagccc 214
Query: 463 agatgagcaccctttcttttccaaggatctgcctgagccccggttgccacctatgcaata 522
|||||||||||| |||||| | | |||||||||||| | | |||||| ||||| || ||
Sbjct: 215 agatgagcacccattctttccagaagatctgcctgagacactgttgccgcctatccagta 274
Query: 523 cccaagggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaat 582
|||| |||| ||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 275 tccaacggttctgcatcctattgctgattccattaatatcaacaaagagatttggaaaat 334
Query: 583 gtattttgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatc 642
||| ||||||||| || || |||| |||||||||||| |||||||||| ||| || |||
Sbjct: 335 gtactttgatgaagttatttcaaggttggtgaaagaaagaagtgatgggaattcttgatt 394
Query: 643 cagtgctctttgtgacacaacctgcttgcaggcactctccagaag-gatccactatggga 701
|||||||||||||||||| |||||||||||||| |||| | ||| ||||||||| |||
Sbjct: 395 cagtgctctttgtgacacgacctgcttgcaggccctctttaaaagaaatccactat-gga 453
Query: 702 agtttgtggcagaggccaagtttcaagagtcccctgaagcttacac 747
||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 454 agtttgtggcanaggccaagtttcaagaggtccctgaagcttacac 499
>gb|BF260956.1|BF260956 HVSMEf0023G04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023G04f, mRNA sequence
Length = 746
Score = 444 bits (224), Expect = e-123
Identities = 353/396 (89%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 351 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 410
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| ||||| || ||||||||
Sbjct: 411 caatgctgatacgtatgatagcagttctttccatgtggatggatttgggggctctttggt 470
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 471 tgaattcatggttagagaaactgaaaagctacacgcaaaggttgggagatacaagagccc 530
Query: 463 agatgagcaccctttcttttccaaggatctgcctgagccccggttgccacctatgcaata 522
|||||||||||| |||||| | | |||||||||||| | | |||||| ||||| || ||
Sbjct: 531 agatgagcacccattctttccagaagatctgcctgagacactgttgccgcctatccagta 590
Query: 523 cccaagggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaat 582
|||| |||| ||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 591 tccaacggttctgcatcctattgctgattccattaatatcaacaaagagatttggaaaat 650
Query: 583 gtattttgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatc 642
||| ||||||||| || ||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 651 gtactttgatgaagttattccaaggttggtgaaagaaggaagtgatggaaattctggatc 710
Query: 643 cagtgctctttgtgacacaacctgcttgcaggcact 678
|||||||||||||||||| |||||||||||||||||
Sbjct: 711 cagtgctctttgtgacacgacctgcttgcaggcact 746
>gb|AV912784.1|AV912784 AV912784 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10e01 5', mRNA sequence
Length = 543
Score = 398 bits (201), Expect = e-109
Identities = 291/321 (90%)
Strand = Plus / Plus
Query: 427 aaagctccatgcacaggttgggagatacaagagcccagatgagcaccctttcttttccaa 486
|||||| || ||| |||||||||||||||||||||||||||||||||| |||||| | |
Sbjct: 5 aaagctacacgcaaaggttgggagatacaagagcccagatgagcacccattctttccaga 64
Query: 487 ggatctgcctgagccccggttgccacctatgcaatacccaagggttttgcatcccattgc 546
|||||||||||| | | |||||| ||||| || || |||| |||| ||||||| |||||
Sbjct: 65 agatctgcctgagacactgttgccgcctatccagtatccaacggttctgcatcctattgc 124
Query: 547 tgattctatcaatatcaacaaagagatttggaaaatgtattttgatgaacttcttccaag 606
|||||| || ||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 125 tgattccattaatatcaacaaagagatttggaaaatgtactttgatgaagttattccaag 184
Query: 607 attggtgaaagaaggaagtgatggtaatgctggatccagtgctctttgtgacacaacctg 666
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 185 gttggtgaaagaaggaagtgatggaaattctggatccagtgctctttgtgacacgacctg 244
Query: 667 cttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttca 726
||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttgcaggcactctctaaaagaatccactatgggaagtttgtggcagaggccaagtttca 304
Query: 727 agagtcccctgaagcttacac 747
|||||||||||||||||||||
Sbjct: 305 agagtcccctgaagcttacac 325
>gb|AV915960.1|AV915960 AV915960 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16n12 5', mRNA sequence
Length = 470
Score = 394 bits (199), Expect = e-108
Identities = 280/307 (91%)
Strand = Plus / Plus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||
Sbjct: 1 aggttgggagatacaagagcccagatgagcacccattctttccagaagatctgcctgaga 60
Query: 501 cccggttgccacctatgcaatacccaagggttttgcatcccattgctgattctatcaata 560
| | |||||| ||||| || || |||| |||| ||||||| ||||||||||| || ||||
Sbjct: 61 cactgttgccgcctatccagtatccaacggttctgcatcctattgctgattccattaata 120
Query: 561 tcaacaaagagatttggaaaatgtattttgatgaacttcttccaagattggtgaaagaag 620
||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||
Sbjct: 121 tcaacaaagagatttggaaaatgtactttgatgaagttattccaaggttggtgaaagaag 180
Query: 621 gaagtgatggtaatgctggatccagtgctctttgtgacacaacctgcttgcaggcactct 680
|||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 gaagtgatggaaattctggatccagtgctctttgtgacacgacctgcttgcaggcactct 240
Query: 681 ccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagagtcccctgaag 740
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctaaaagaatccactatgggaagtttgtggcagaggccaagtttcaagagtcccctgaag 300
Query: 741 cttacac 747
|||||||
Sbjct: 301 cttacac 307
>gb|BF631171.2|BF631171 HVSMEb0015C20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015C20f, mRNA sequence
Length = 777
Score = 313 bits (158), Expect = 5e-084
Identities = 347/402 (86%), Gaps = 6/402 (1%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 370 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 429
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| ||||| || ||||||||
Sbjct: 430 caatgctgatacgtatgatagcagttctttccatgtggatggatttgggggctctttggt 489
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 490 tgaattcatggttagagaaactgaaaagctacacgcaaaggttgggagatacaagagccc 549
Query: 463 agatgagcaccctttcttttccaaggatctgcctgagccccggttgccacctatgcaata 522
|||||||||||| |||||| | | |||||||||||| | | |||||| ||||| || ||
Sbjct: 550 agatgagcacccattctttccagaagatctgcctgagacactgttgccgcctatccagta 609
Query: 523 cccaagggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaat 582
|||| || | ||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 610 tccaacgggtctgcatcctattgctgattccattaatatcaacaaagagatttggaaaat 669
Query: 583 gta-ttttgatgaacttctt-ccaagattggtgaaagaa-ggaagtgatggtaatgc-tg 638
||| ||| |||||| || || ||| | ||||||||| || ||||||||||| ||| | ||
Sbjct: 670 gtactttggatgaagttattcccagggttggtgaaaaaatggaagtgatggaaattcttg 729
Query: 639 gatccagtgc-tctttgtgacac-aacctgcttgcaggcact 678
||| | ||| |||||| ||||| ||||||||||||||||||
Sbjct: 730 gattccatgcttctttgagacacgaacctgcttgcaggcact 771
>gb|BG415849.1|BG415849 HVSMEk0008C14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008C14f, mRNA sequence
Length = 660
Score = 242 bits (122), Expect = 2e-062
Identities = 374/458 (81%)
Strand = Plus / Plus
Query: 290 agactagaagacagcatcatatttggccttttggagagagcacagttttgttacaatgct 349
|||||| |||||||| ||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 61 agactacaagacagcttcatattcggtctcttggagagagcacagttttgttacaaggct 120
Query: 350 gatacatatgatagcaatgctttccacatggatggttttggaggatctttggttgaatat 409
||||| |||||||||| | ||||||| ||||||| | ||| || |||||||| |||||
Sbjct: 121 gatacgtatgatagcagttctttccatgtggatggatctgggggctctttggtggaatac 180
Query: 410 atagttagagaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgag 469
|| ||||||||| |||||| ||| || || ||| |||||||||||||||||| |||||
Sbjct: 181 atggttagagaacctgaaacgctacacccaagggtggggagatacaagagcccatatgag 240
Query: 470 caccctttcttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagg 529
||||| |||||| | | ||||||||||| | | || ||| ||||| || | || |
Sbjct: 241 cacccattctttccagaagatctgcctgatacactgtggccgcctatccagcatacagcg 300
Query: 530 gttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtatttt 589
||| ||||||| ||||||||||| | |||||||||| ||||||||||||||| | |
Sbjct: 301 gttctgcatcctattgctgattcccttaatatcaacaggcagatttggaaaatgtcctat 360
Query: 590 gatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgct 649
|||||| || ||||||| |||| ||||||||||||||| || |||| |||||||||||||
Sbjct: 361 gatgaagttattccaaggttggcgaaagaaggaagtgagggaaatggtggatccagtgct 420
Query: 650 ctttgtgacacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtg 709
| || ||||| ||||||||||||| |||| | || |||| |||||||| || || |
Sbjct: 421 ttgtgcgacaccacctgcttgcaggtcctctataaaacaatcccctatgggacgtctgcg 480
Query: 710 gcagaggccaagtttcaagagtcccctgaagcttacac 747
||| ||||||| | | ||||| ||||||| ||||||||
Sbjct: 481 gcacaggccaattcttaagagccccctgatgcttacac 518
>gb|BE216096.1|BE216096 HV_CEb0009G14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009G14f, mRNA sequence
Length = 578
Score = 240 bits (121), Expect = 7e-062
Identities = 193/217 (88%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 351 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 410
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| ||||| || ||||||||
Sbjct: 411 caatgctgatacgtatgatagcagttctttccatgtggatggatttgggggctctttggt 470
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 471 tgaattcatggttagagaaactgaaaagctacacgcaaaggttgggagatacaagagccc 530
Query: 463 agatgagcaccctttcttttccaaggatctgcctgag 499
|||||||||||| |||||| | | ||||||||||||
Sbjct: 531 agatgagcacccattctttccagaagatctgcctgag 567
>gb|BI960271.1|BI960271 HVSMEn0024A19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024A19f, mRNA sequence
Length = 633
Score = 220 bits (111), Expect = 6e-056
Identities = 177/199 (88%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 430 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 489
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| | ||| || ||||||||
Sbjct: 490 caatgctgatacgtatgatagcagttctttccatgtggatggatctgggggctctttggt 549
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 550 tgaattcatggttagagaaactgaaaagctacacgcaaaggttgggagatacaagagccc 609
Query: 463 agatgagcaccctttcttt 481
| |||||||||| ||||||
Sbjct: 610 aaatgagcacccattcttt 628
>gb|BE455736.3|BE455736 HVSMEg0019G20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019G20f, mRNA sequence
Length = 829
Score = 190 bits (96), Expect = 5e-047
Identities = 159/180 (88%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 352 tttgatcagactagaagacagcatcatattcggtctcttggagagagcacagtattgtta 411
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| |||||||||| | ||||||| ||||||| ||||| || ||||||||
Sbjct: 412 caatgctgatacgtatgatagcagttctttccatgtggatggatttgggggctctttggt 471
Query: 403 tgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatacaagagccc 462
||||| || |||||| ||||||||||||| || ||| ||| ||||||||||||||||||
Sbjct: 472 tgaattcatggttagaaaaactgaaaagctacacgcaaagggtgggagatacaagagccc 531
>gb|AV917519.1|AV917519 AV917519 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10e01 3', mRNA sequence
Length = 706
Score = 172 bits (87), Expect = 1e-041
Identities = 106/111 (95%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 638 ggatccagtgctctttgtgacacaacct-gcttgcaggcactctccagaaggatccacta 696
||||||||||||||||||||||| |||| |||||||||||||||| | ||| ||||||||
Sbjct: 706 ggatccagtgctctttgtgacacgaccttgcttgcaggcactctctaaaagaatccacta 647
Query: 697 tgggaagtttgtggcagaggccaagtttcaagagtcccctgaagcttacac 747
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgggaagtttgtggcagaggccaagtttcaagagtcccctgaagcttacac 596
>gb|BG415342.2|BG415342 HVSMEk0006B21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006B21f, mRNA sequence
Length = 653
Score = 117 bits (59), Expect = 6e-025
Identities = 157/187 (83%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| ||||||||||||||||| |||||| | || |||||||||||||||| ||||||
Sbjct: 457 tttgatcagactagaagacagcatgatatttcggctcttggagagagcacagtattgtta 516
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| ||||||| || | ||||||| ||||||| |||| || || || ||
Sbjct: 517 caatgctgatacgtatgataacagttctttccatgtggatggaattgggggctc-ttagt 575
Query: 403 tgaatatatagttagagaaact-gaaaagctccatgcacaggttgggagatacaagagcc 461
|||| || |||||||||||| |||||||| || | ||| |||||||||||||| ||
Sbjct: 576 tgaaatcatggttagagaaactggaaaagctacaccccaagggtgggagatacaagatcc 635
Query: 462 cagatga 468
|||||||
Sbjct: 636 cagatga 642
>gb|BF623318.1|BF623318 HVSMEa0015G04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015G04f, mRNA sequence
Length = 839
Score = 115 bits (58), Expect = 3e-024
Identities = 121/142 (85%)
Strand = Plus / Plus
Query: 283 tttgattagactagaagacagcatcatatttggccttttggagagagcacagttttgtta 342
|||||| |||||||||||||||||||||| || || | |||||||||||||| ||||||
Sbjct: 351 tttgatcagactagaagacagcatcatatacgggctctaggagagagcacagtattgtta 410
Query: 343 caatgctgatacatatgatagcaatgctttccacatggatggttttggaggatctttggt 402
|||||||||||| ||||||| || | |||| || | ||||| ||||| || ||||||||
Sbjct: 411 caatgctgatacttatgataccagttctttacatgtagatggatttgggggctctttggt 470
Query: 403 tgaatatatagttagagaaact 424
||||| || ||||||||||||
Sbjct: 471 tgaattgatggttagagaaact 492
>gb|BI952463.1|BI952463 HVSMEm0006I19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006I19f, mRNA sequence
Length = 871
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 627 atggtaatgctggatccagtgctc 650
||||||||||||||| ||||||||
Sbjct: 418 atggtaatgctggattcagtgctc 441
>gb|AL506314.1|AL506314 AL506314 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L14T 5',
mRNA sequence
Length = 366
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 52 agctggccaccaaggccgc 70
>gb|BI948941.1|BI948941 HVSMEl0011J17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011J17f, mRNA sequence
Length = 518
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 91 agctggccaccaaggccgc 109
>gb|BE231130.2|BE231130 HVSMEg0016P11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016P11f, mRNA sequence
Length = 906
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 91 agctggccaccaaggccgc 109
>gb|BG416440.2|BG416440 HVSMEk0012E14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012E14f, mRNA sequence
Length = 882
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 105 agctggccaccaaggccgc 123
>gb|BQ470890.1|BQ470890 HX04F17r HX Hordeum vulgare subsp. vulgare cDNA clone HX04F17
5-PRIME, mRNA sequence
Length = 642
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 104 agctggccaccaaggccgc 122
>gb|BM375180.2|BM375180 EBem06_SQ002_J11_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_J11 5', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 99 agctggccaccaaggccgc 117
>gb|BM375933.2|BM375933 EBem06_SQ004_N06_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_N06 5', mRNA sequence
Length = 482
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 95 agctggccaccaaggccgc 113
>gb|BM370408.2|BM370408 EBro08_SQ004_C05_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_C05 5', mRNA sequence
Length = 623
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 65 agctggccaccaaggccgc 83
>gb|BQ761000.1|BQ761000 EBro04_SQ001_N03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N03 5', mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 101 agctggccaccaaggccgc 119
>gb|BU983494.1|BU983494 HA29O21r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O21
5-PRIME, mRNA sequence
Length = 542
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 110 agctggccaccaaggccgc 128
>gb|BU986814.1|BU986814 HF12P19r HF Hordeum vulgare subsp. vulgare cDNA clone HF12P19
5-PRIME, mRNA sequence
Length = 562
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 108 agctggccaccaaggccgc 126
>gb|BU987078.1|BU987078 HF13L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF13L21
5-PRIME, mRNA sequence
Length = 559
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 97 agctggccaccaaggccgc 115
>gb|CA020826.1|CA020826 HZ37P03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37P03
5-PRIME, mRNA sequence
Length = 504
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 112 agctggccaccaaggccgc 130
>gb|CA022418.1|CA022418 HZ43B19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43B19
5-PRIME, mRNA sequence
Length = 373
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 109 agctggccaccaaggccgc 127
>gb|CA023939.1|CA023939 HZ47O03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47O03
5-PRIME, mRNA sequence
Length = 432
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 104 agctggccaccaaggccgc 122
>gb|CA030367.1|CA030367 HX06N13r HX Hordeum vulgare subsp. vulgare cDNA clone HX06N13
5-PRIME, mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 112 agctggccaccaaggccgc 130
>gb|CA031058.1|CA031058 HX08O08r HX Hordeum vulgare subsp. vulgare cDNA clone HX08O08
5-PRIME, mRNA sequence
Length = 641
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 115 agctggccaccaaggccgc 133
>gb|CA031774.1|CA031774 HX11B15r HX Hordeum vulgare subsp. vulgare cDNA clone HX11B15
5-PRIME, mRNA sequence
Length = 647
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 121 agctggccaccaaggccgc 139
>gb|CB874959.1|CB874959 HX06N13w HX Hordeum vulgare subsp. vulgare cDNA clone HX06N13
3-PRIME, mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 469 agctggccaccaaggccgc 451
>gb|CB875632.1|CB875632 HX08O08w HX Hordeum vulgare subsp. vulgare cDNA clone HX08O08
3-PRIME, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 548 agctggccaccaaggccgc 530
>gb|CK122324.1|CK122324 BES1824102n21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N212 5-PRIME, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 66 agctggccaccaaggccgc 84
>gb|CK122731.1|CK122731 BES1824105j15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J155 5-PRIME, mRNA sequence
Length = 675
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 107 agctggccaccaaggccgc 125
>gb|CK122733.1|CK122733 BES1824105j17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J175 5-PRIME, mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 94 agctggccaccaaggccgc 112
>gb|CK123092.1|CK123092 BES1824102b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B082 5-PRIME, mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 84 agctggccaccaaggccgc 102
>gb|CK123567.1|CK123567 BES1824104g22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G224 5-PRIME, mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 100 agctggccaccaaggccgc 118
>gb|CK125121.1|CK125121 BES1824106m05 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M056 5-PRIME, mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 agctggccaccaaggccgc 93
|||||||||||||||||||
Sbjct: 94 agctggccaccaaggccgc 112
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,387
Number of Sequences: 312970
Number of extensions: 106387
Number of successful extensions: 30708
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30654
Number of HSP's gapped (non-prelim): 51
length of query: 892
length of database: 175,134,539
effective HSP length: 19
effective length of query: 873
effective length of database: 169,188,109
effective search space: 147701219157
effective search space used: 147701219157
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)