BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521334.2.1
(1277 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. v... 571 e-161
gb|BF628718.2|BF628718 HVSMEb0007G19f Hordeum vulgare seedl... 519 e-146
gb|AV915427.1|AV915427 AV915427 K. Sato unpublished cDNA li... 511 e-143
gb|AV916100.1|AV916100 AV916100 K. Sato unpublished cDNA li... 511 e-143
gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachi... 505 e-141
gb|BQ460413.1|BQ460413 HA09L02r HA Hordeum vulgare subsp. v... 492 e-137
gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, dro... 482 e-134
gb|CK123368.1|CK123368 BES1824103j21 BES1824 Hordeum vulgar... 472 e-131
gb|BU966781.1|BU966781 HB02F11r BC Hordeum vulgare subsp. v... 462 e-128
gb|BU980869.1|BU980869 HA21O23r HA Hordeum vulgare subsp. v... 460 e-128
gb|BJ463409.1|BJ463409 BJ463409 K. Sato unpublished cDNA li... 458 e-127
gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke devel... 452 e-125
gb|AV914553.1|AV914553 AV914553 K. Sato unpublished cDNA li... 446 e-124
gb|BU979145.1|BU979145 HA15E14r HA Hordeum vulgare subsp. v... 442 e-122
gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedl... 422 e-116
gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. v... 381 e-104
gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachi... 377 e-103
gb|CB881016.1|CB881016 HM08I11w HM Hordeum vulgare subsp. v... 373 e-101
gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiol... 363 9e-099
gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. v... 353 9e-096
gb|CA020204.1|CA020204 HV14K06r HV Hordeum vulgare subsp. v... 349 1e-094
gb|AL509313.1|AL509313 AL509313 Hordeum vulgare Barke devel... 333 8e-090
gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. v... 333 8e-090
gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedl... 321 3e-086
gb|CV057758.1|CV057758 BNEL30e11 Barley EST endosperm libra... 317 5e-085
gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. v... 315 2e-084
gb|AJ434640.1|AJ434640 AJ434640 S00002 Hordeum vulgare subs... 307 5e-082
gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA li... 291 3e-077
gb|BU994969.1|BU994969 HM08M12r HM Hordeum vulgare subsp. v... 289 1e-076
gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. v... 287 4e-076
gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. v... 283 7e-075
gb|AV919630.1|AV919630 AV919630 K. Sato unpublished cDNA li... 274 7e-072
gb|CA027202.1|CA027202 HZ58D01r HZ Hordeum vulgare subsp. v... 266 2e-069
gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke devel... 260 1e-067
gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. v... 248 4e-064
gb|AL509444.1|AL509444 AL509444 Hordeum vulgare Barke devel... 244 6e-063
gb|AV918551.1|AV918551 AV918551 K. Sato unpublished cDNA li... 244 6e-063
gb|CB880909.1|CB880909 HM08D01w HM Hordeum vulgare subsp. v... 244 6e-063
gb|BM442857.2|BM442857 EBro02_SQ001_J08_R root, 3 week, hyd... 238 4e-061
gb|BM442871.2|BM442871 EBro02_SQ001_K09_R root, 3 week, hyd... 238 4e-061
gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedl... 232 2e-059
gb|AV913257.1|AV913257 AV913257 K. Sato unpublished cDNA li... 232 2e-059
gb|AV920515.1|AV920515 AV920515 K. Sato unpublished cDNA li... 232 2e-059
gb|BQ740108.1|BQ740108 HC105G07 HC Hordeum vulgare subsp. v... 232 2e-059
gb|CA023687.1|CA023687 HZ47B06r HZ Hordeum vulgare subsp. v... 222 2e-056
gb|AV931358.1|AV931358 AV931358 K. Sato unpublished cDNA li... 216 1e-054
gb|BU994783.1|BU994783 HM08D01r HM Hordeum vulgare subsp. v... 208 3e-052
gb|BQ459986.1|BQ459986 HA07I14r HA Hordeum vulgare subsp. v... 204 5e-051
gb|BI956336.1|BI956336 HVSMEn0002I15f Hordeum vulgare rachi... 194 5e-048
gb|BQ468773.1|BQ468773 HM02E22r HM Hordeum vulgare subsp. v... 178 3e-043
gb|CA025575.1|CA025575 HZ52I20r HZ Hordeum vulgare subsp. v... 161 7e-038
gb|AL450795.1|AL450795 AL450795 Hordeum vulgare Barke etiol... 159 3e-037
gb|BF624943.2|BF624943 HVSMEa0005D18f Hordeum vulgare seedl... 155 4e-036
gb|BE216725.2|BE216725 HV_CEb0011F17f Hordeum vulgare seedl... 155 4e-036
gb|BM098215.2|BM098215 EBpi03_SQ002_O01_R pistil, 4 DPA, no... 155 4e-036
gb|BM370719.2|BM370719 EBro04_SQ001_P16_R root, 3 week, sal... 155 4e-036
gb|CA023591.1|CA023591 HZ46L22r HZ Hordeum vulgare subsp. v... 155 4e-036
gb|CA021772.1|CA021772 HZ41B03r HZ Hordeum vulgare subsp. v... 151 7e-035
gb|BI959597.1|BI959597 HVSMEn0020F15f Hordeum vulgare rachi... 147 1e-033
gb|AV916674.1|AV916674 AV916674 K. Sato unpublished cDNA li... 147 1e-033
gb|AV921964.1|AV921964 AV921964 K. Sato unpublished cDNA li... 147 1e-033
gb|BU979996.1|BU979996 HA18C16r HA Hordeum vulgare subsp. v... 147 1e-033
gb|BF617024.2|BF617024 HVSMEc0014F02f Hordeum vulgare seedl... 123 2e-026
gb|BG309723.2|BG309723 HVSMEc0012C21f Hordeum vulgare seedl... 117 9e-025
gb|AV914858.1|AV914858 AV914858 K. Sato unpublished cDNA li... 113 1e-023
gb|BI947155.1|BI947155 HVSMEl0003P07f Hordeum vulgare spike... 109 2e-022
gb|BG300247.1|BG300247 HVSMEb0011L19f Hordeum vulgare seedl... 107 9e-022
gb|AL499856.1|AL499856 AL499856 Hordeum vulgare Barke etiol... 105 4e-021
gb|BU994141.1|BU994141 HM05O05r HM Hordeum vulgare subsp. v... 103 1e-020
gb|CB880806.1|CB880806 HM07O05w HM Hordeum vulgare subsp. v... 103 1e-020
gb|AV926475.1|AV926475 AV926475 K. Sato unpublished cDNA li... 90 2e-016
gb|CB880881.1|CB880881 HM08B17w HM Hordeum vulgare subsp. v... 88 8e-016
gb|CB881065.1|CB881065 HM08K19w HM Hordeum vulgare subsp. v... 88 8e-016
gb|BU994754.1|BU994754 HM08B17r HM Hordeum vulgare subsp. v... 82 5e-014
gb|BE437619.1|BE437619 SFR005.G01F990623 ITEC SFR Barley Le... 76 3e-012
gb|AL503646.1|AL503646 AL503646 Hordeum vulgare Barke roots... 76 3e-012
gb|AV916113.1|AV916113 AV916113 K. Sato unpublished cDNA li... 76 3e-012
gb|AJ435399.1|AJ435399 AJ435399 S00002 Hordeum vulgare subs... 76 3e-012
gb|BQ661176.1|BQ661176 HM02E22u HM Hordeum vulgare subsp. v... 76 3e-012
gb|BM370181.2|BM370181 EBro08_SQ003_D20_R root, 3 week, dro... 76 3e-012
gb|BQ767929.1|BQ767929 EBro08_SQ010_A08_R root, 3 week, dro... 76 3e-012
gb|CA010258.1|CA010258 HT11C05u HT Hordeum vulgare subsp. v... 76 3e-012
gb|CD664036.1|CD664036 UCRHV18_07ca10_b1 Drought-stressed D... 76 3e-012
gb|BQ760883.1|BQ760883 EBro03_SQ003_L21_R root, 3 week, wat... 70 2e-010
gb|BF253452.2|BF253452 HVSMEf0001H09f Hordeum vulgare seedl... 62 5e-008
gb|AV919950.1|AV919950 AV919950 K. Sato unpublished cDNA li... 50 2e-004
>gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. vulgare cDNA clone HA08M15
5-PRIME, mRNA sequence
Length = 632
Score = 571 bits (288), Expect = e-161
Identities = 546/632 (86%)
Strand = Plus / Plus
Query: 375 gaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgca 434
||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 gaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgca 60
Query: 435 gatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacat 494
| ||||||| ||||||||| || || || || |||||||||||||| ||||| ||| |
Sbjct: 61 gctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgt 120
Query: 495 cgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtacttaccg 554
||||||||||||||| || |||||||||||||| ||||||||||||||||| | |||||
Sbjct: 121 cgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcataccg 180
Query: 555 ctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttcatga 614
|||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |||||
Sbjct: 181 ctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgcatga 240
Query: 615 gaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccactaggag 674
||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 241 gaagatcgagcacaaggcttacggtgatgatgagatcatcagaatcctcaccaccaggag 300
Query: 675 caaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaa 734
|||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| |||||
Sbjct: 301 caaagctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaatcac 360
Query: 735 caaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccg 794
|||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||
Sbjct: 361 caaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccg 420
Query: 795 gtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggct 854
|||||||| |||||||| ||||||||||||||||| || ||| |||||| || |||
Sbjct: 421 gtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaa 480
Query: 855 aggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaa 914
|| || |||||||||||||| || |||||||| || |||||||| ||||||||||| ||
Sbjct: 481 tggaaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaa 540
Query: 915 actgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggg 974
||||| || ||||| ||||||||||||||||| || || ||||| ||||||||| ||
Sbjct: 541 gctgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcagg 600
Query: 975 ggacacctccggcgactacgagagcatgctcc 1006
|||||||||||||||||||||| ||||||||
Sbjct: 601 cgacacctccggcgactacgagaccatgctcc 632
>gb|BF628718.2|BF628718 HVSMEb0007G19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007G19f, mRNA sequence
Length = 698
Score = 519 bits (262), Expect = e-146
Identities = 460/526 (87%)
Strand = Plus / Plus
Query: 305 agagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacg 364
||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 120 agagggctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 179
Query: 365 aggcggcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgca 424
|| | || ||||||| | |||||||||| ||||||||||||||||||||| |||||
Sbjct: 180 agaccgccaagaagtggcaccccgggaaccccgtgctcgtcgagatcgcctgctcgcgcg 239
Query: 425 cctccgcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttg 484
|||||||||| ||||||| ||||||||| || || || || |||||||||||||| |
Sbjct: 240 gctccgcgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcg 299
Query: 485 aggaagacatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaa 544
|||| ||| |||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 300 aggaggacgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaa 359
Query: 545 gtacttaccgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaac 604
| | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 360 gctcataccgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaa 419
Query: 605 tacttcatgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctca 664
|||| |||||||||||| | || ||||||||| |||||||||||||||||||||||||||
Sbjct: 420 tactgcatgagaagatcgagcataaggcttacggtgatgatgagatcatcagaatcctca 479
Query: 665 ccactaggagcaaacctcagctgattgctacattcaatcattacaatgatgcatttggcc 724
|||| ||||||||| |||||||| |||| ||| ||||| | |||||||| ||||||| |
Sbjct: 480 ccaccaggagcaaagctcagctgcttgcaacactcaataactacaatgacacatttggtc 539
Query: 725 accgaatcaacaaggatctgaaggctgacccccaggacgagtacctcagaacgctgcggg 784
||| ||||| |||||||||||||||||||||| |||| |||| ||||| ||| || ||||
Sbjct: 540 acccaatcaccaaggatctgaaggctgaccccaaggatgagttcctcaaaaccctccggg 599
Query: 785 cgatcatccggtgcttcagttgccctgacaggtactttgagaaggt 830
|| | ||||||||||||| |||||||| |||||||||||||||||
Sbjct: 600 cggttatccggtgcttcacctgccctgataggtactttgagaaggt 645
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 283 gacgagatctccggcgacttcgag 306
||||||||||| ||||||||||||
Sbjct: 5 gacgagatctcaggcgacttcgag 28
>gb|AV915427.1|AV915427 AV915427 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f21 5', mRNA sequence
Length = 588
Score = 511 bits (258), Expect = e-143
Identities = 487/562 (86%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 447 caggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgt 506
||||||||| || || || || |||||||||||||| ||||| ||| |||||||||||||
Sbjct: 21 caggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgt 80
Query: 507 cactggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacc 566
||| || |||||||||||||| ||||||||||||||||| | ||||||||||| |||||
Sbjct: 81 caccggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggacc 140
Query: 567 agaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatca 626
|||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | ||
Sbjct: 141 agaggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagca 200
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagct 686
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 201 caaggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagct 260
Query: 687 gattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaa 746
| |||| ||| ||||| | |||||||| ||||||| |||| ||||| ||||||||||||
Sbjct: 261 gcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaa 320
Query: 747 ggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttg 806
|||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| ||
Sbjct: 321 ggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctg 380
Query: 807 ccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcacagatga 866
|||||| ||||||||||||||||| || ||| |||||| || ||| || || |||||
Sbjct: 381 ccctgataggtactttgagaaggttgccaggttggccattgcagggaatggaaccgatga 440
Query: 867 gaactccctgaccagggtcatcaccacccgcg-ctgaggtggacctcaaactgattaagg 925
||||||||| || |||||||| || ||||||| | ||||||||||| || ||||| || |
Sbjct: 441 gaactccctcactagggtcataacgacccgcgcccgaggtggacctgaagctgatcaaag 500
Query: 926 aggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggacacctccg 985
|||| ||||||||||||||||| || || ||||| ||||||||| || ||||||||||
Sbjct: 501 aggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcgacacctccg 560
Query: 986 gcgactacgagagcatgctcct 1007
|||||||||||| |||||||||
Sbjct: 561 gcgactacgagaccatgctcct 582
>gb|AV916100.1|AV916100 AV916100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1h08 5', mRNA sequence
Length = 598
Score = 511 bits (258), Expect = e-143
Identities = 513/597 (85%), Gaps = 1/597 (0%)
Strand = Plus / Plus
Query: 397 gtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgcgaccaggcaggct 456
|||||||||| | ||||||| ||||| |||||||||| ||||||| |||||||||
Sbjct: 2 gtgctcgtcgcgnacgcctgctcgcgcggctccgcgcagctcttcgccgtcaggcaggcc 61
Query: 457 tatcacg-agcggttcaagcgctcgcttgaggaagacatcgctgcgcacgtcactgggga 515
|| || | | || |||||||||||||| ||||| ||| |||||||||||||||| || ||
Sbjct: 62 taccatgnaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgtcaccggcga 121
Query: 516 cttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccagaggtcaa 575
|||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct: 122 cttccgcaagctcttggtgccacttgtaagctcataccgctatgagggaccagaggtcaa 181
Query: 576 cacaaggttggcacactcagaagccaaactacttcatgagaagatccatcacaaggctta 635
||||||||||||||| ||||| |||||| |||| |||||||||||| | |||||||||||
Sbjct: 182 cacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcacaaggctta 241
Query: 636 cagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctgattgctac 695
| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||
Sbjct: 242 cggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctgcttgcaac 301
Query: 696 attcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgaccc 755
| ||||| | |||||||| ||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 302 actcaataactacaatgacacatttggtcacccaatcaccaaggatctgaaggctgaccc 361
Query: 756 ccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacag 815
| |||| |||| ||||| ||| ||||||||| | ||||||||||||| |||||||| ||
Sbjct: 362 caaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgccctgatag 421
Query: 816 gtactttgagaaggtggctaggcaggccatagcggggctaggcacagatgagaactccct 875
||||||||||||||| || ||| |||||| || ||| || || ||||||||||||||
Sbjct: 422 gtactttgagaaggttgccaggttggccattgcagggaatggaaccgatgagaactccct 481
Query: 876 gaccagggtcatcaccacccgcgctgaggtggacctcaaactgattaaggaggcgtacca 935
|| |||||||| || |||||||| ||||||||||| || ||||| || ||||| |||||
Sbjct: 482 cactagggtcataacgacccgcgccgaggtggacctgaagctgatcaaagaggcatacca 541
Query: 936 gaagaggaacagcgtgccgctggagcgggccgtcgcgggggacacctccggcgacta 992
|||||||||||| || || ||||| ||||||||| || |||||||||||||||||
Sbjct: 542 gaagaggaacagtgtccccttggagaaggccgtcgcaggcgacacctccggcgacta 598
>gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015C15f, mRNA sequence
Length = 656
Score = 505 bits (255), Expect = e-141
Identities = 455/522 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 125 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 184
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 185 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 244
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 245 ccaagaagtggcaccccgggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 304
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 305 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 364
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 365 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 424
Query: 551 accgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttc 610
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
Sbjct: 425 accgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgc 484
Query: 611 atgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccacta 670
||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 485 atgagaagatcgagcataaggcttacggtgatgatgagatcatcagaatcctcaccacca 544
Query: 671 ggagcaaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaa 730
|||||||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| ||
Sbjct: 545 ggagcaaagctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaa 604
Query: 731 tcaacaaggatctgaaggctgacccccaggacgagtacctca 772
| || | |||||||||||||||||| |||| |||| |||||
Sbjct: 605 tncaccaagatctgaaggctgaccccaaggatgagttcctca 646
Score = 81.8 bits (41), Expect = 5e-014
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 159 agggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 33 agggtggggcacgaacgaggcgctcatcatctccatcctgggcca 77
>gb|BQ460413.1|BQ460413 HA09L02r HA Hordeum vulgare subsp. vulgare cDNA clone HA09L02
5-PRIME, mRNA sequence
Length = 551
Score = 492 bits (248), Expect = e-137
Identities = 455/524 (86%)
Strand = Plus / Plus
Query: 388 gggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgcgacc 447
||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||| |
Sbjct: 21 gggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcgccgtc 80
Query: 448 aggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgtc 507
|||||||| || || || || |||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 81 aggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgtc 140
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
|| || |||||||||||||| ||||||||||||||||| | ||||||||||| ||||||
Sbjct: 141 accggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggacca 200
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | |||
Sbjct: 201 gaggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcac 260
Query: 628 aaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctg 687
||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 261 aaggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctg 320
Query: 688 attgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaag 747
|||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||||||||||
Sbjct: 321 cttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaag 380
Query: 748 gctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgc 807
||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| |||
Sbjct: 381 gctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgc 440
Query: 808 cctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcacagatgag 867
||||| ||||||||||||||||| || ||| |||||| || ||| || || ||||||
Sbjct: 441 cctgataggtactttgagaaggttgccaggttggccattgcagggaatggaaccgatgag 500
Query: 868 aactccctgaccagggtcatcaccacccgcgctgaggtggacct 911
|||||||| || |||||||| || |||||||| |||||||||||
Sbjct: 501 aactccctcactagggtcataacgacccgcgccgaggtggacct 544
>gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_H12 5', mRNA sequence
Length = 586
Score = 482 bits (243), Expect = e-134
Identities = 441/507 (86%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccagaggtc 573
|||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 3 gacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggaccagaggtc 62
Query: 574 aacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcacaaggct 633
||||||||||||||||| ||||| |||||| |||| |||||||||||| | |||||||||
Sbjct: 63 aacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcacaaggct 122
Query: 634 tacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctgattgct 693
||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct: 123 tacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctgcttgca 182
Query: 694 acattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgac 753
||| ||||| | |||||||| ||||||| |||| ||||| |||||||||||||||||||
Sbjct: 183 acactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaaggctgac 242
Query: 754 ccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgac 813
||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| ||||||||
Sbjct: 243 cccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgccctgat 302
Query: 814 aggtactttgagaaggtggctaggcaggccatagcggggctaggcacagatgagaactcc 873
||||||||||||||||| || ||| |||||| || ||| || || ||||||||||||
Sbjct: 303 aggtactttgagaaggttgccaggttggccattgcagggaatggaaccgatgagaactcc 362
Query: 874 ctgaccagggtcatcaccacccgcgctgaggtggacctcaaactgattaaggaggcgtac 933
|| || |||||||| || |||||||| ||||||||||| || ||||| || ||||| |||
Sbjct: 363 ctcactagggtcataacgacccgcgccgaggtggacctgaagctgatcaaagaggcatac 422
Query: 934 cagaagaggaacagcgtgccgctggagcgggccgtcgcgggggacacctccggcgactac 993
|||||||||||||| || || ||||| ||||||||| || ||||||||||||||||||
Sbjct: 423 cagaagaggaacagtgtccccttggagaaggccgtcgcaggcgacacctccggcgactac 482
Query: 994 gagagcatgctcctcgcgctcctgggg 1020
|||| ||||||||| || |||||||||
Sbjct: 483 gagaccatgctccttgccctcctgggg 509
>gb|CK123368.1|CK123368 BES1824103j21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J213 5-PRIME, mRNA sequence
Length = 545
Score = 472 bits (238), Expect = e-131
Identities = 453/525 (86%)
Strand = Plus / Plus
Query: 375 gaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgca 434
||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 18 gaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgca 77
Query: 435 gatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacat 494
| ||||||| ||||||||| || || || || |||||||||||||| ||||| ||| |
Sbjct: 78 gctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgt 137
Query: 495 cgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtacttaccg 554
||||||||||||||| || |||||||||||||| ||||||||||||||||| | |||||
Sbjct: 138 cgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcataccg 197
Query: 555 ctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttcatga 614
|||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |||||
Sbjct: 198 ctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgcatga 257
Query: 615 gaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccactaggag 674
||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 258 gaagatcgagcacaaggcttacgntgatgatgagatcatcagaatcctcaccaccaggag 317
Query: 675 caaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaa 734
|||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| |||||
Sbjct: 318 caaagctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaatcac 377
Query: 735 caaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccg 794
|||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||
Sbjct: 378 caaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccg 437
Query: 795 gtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggct 854
|||||||| |||||||| ||||||||||||||||| || ||| |||||| || |||
Sbjct: 438 gtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaa 497
Query: 855 aggcacagatgagaactccctgaccagggtcatcaccacccgcgc 899
|| || |||||||||||||| || |||||||| || ||||||||
Sbjct: 498 tggaaccgatgagaactccctcactagggtcataacgacccgcgc 542
>gb|BU966781.1|BU966781 HB02F11r BC Hordeum vulgare subsp. vulgare cDNA clone HB02F11
5-PRIME, mRNA sequence
Length = 490
Score = 462 bits (233), Expect = e-128
Identities = 425/489 (86%)
Strand = Plus / Plus
Query: 519 ccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccagaggtcaacac 578
||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct: 1 ccgcaagctcttggtgccacttgtaagctcataccgctatgagggaccagaggtcaacac 60
Query: 579 aaggttggcacactcagaagccaaactacttcatgagaagatccatcacaaggcttacag 638
|||||||||||| ||||| |||||| |||| |||||||||||| | |||||||||||| |
Sbjct: 61 aaggttggcacattcagaggccaaaatactgcatgagaagatcgagcacaaggcttacgg 120
Query: 639 tgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctgattgctacatt 698
|||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||| |
Sbjct: 121 tgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctgcttgcaacact 180
Query: 699 caatcattacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgaccccca 758
|||| | |||||||| ||||||| |||| ||||| |||||||||||||||||||||| |
Sbjct: 181 caataactacaatgacacatttggtcacccaatcaccaaggatctgaaggctgaccccaa 240
Query: 759 ggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacaggta 818
||| |||| ||||| ||| ||||||||| | ||||||||||||| |||||||| |||||
Sbjct: 241 ggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgccctgataggta 300
Query: 819 ctttgagaaggtggctaggcaggccatagcggggctaggcacagatgagaactccctgac 878
|||||||||||| || ||| |||||| || ||| || || |||||||||||||| ||
Sbjct: 301 ctttgagaaggttgccaggttggccattgcagggaatggaaccgatgagaactccctcac 360
Query: 879 cagggtcatcaccacccgcgctgaggtggacctcaaactgattaaggaggcgtaccagaa 938
|||||||| || |||||||| ||||||||||| || ||||| || ||||| ||||||||
Sbjct: 361 tagggtcataacgacccgcgccgaggtggacctgaagctgatcaaagaggcataccagaa 420
Query: 939 gaggaacagcgtgccgctggagcgggccgtcgcgggggacacctccggcgactacgagag 998
||||||||| || || ||||| ||||||||| || ||||||||||||||||||||||
Sbjct: 421 gaggaacagtgtccccttggagaaggccgtcgcaggcgacacctccggcgactacgagac 480
Query: 999 catgctcct 1007
|||||||||
Sbjct: 481 catgctcct 489
>gb|BU980869.1|BU980869 HA21O23r HA Hordeum vulgare subsp. vulgare cDNA clone HA21O23
5-PRIME, mRNA sequence
Length = 517
Score = 460 bits (232), Expect = e-128
Identities = 400/456 (87%)
Strand = Plus / Plus
Query: 375 gaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgca 434
||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 28 gaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgca 87
Query: 435 gatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacat 494
| ||||||| ||||||||| || || || || |||||||||||||| ||||| ||| |
Sbjct: 88 gctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgt 147
Query: 495 cgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtacttaccg 554
||||||||||||||| || |||||||||||||| ||||||||||||||||| | |||||
Sbjct: 148 cgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcataccg 207
Query: 555 ctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttcatga 614
|||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |||||
Sbjct: 208 ctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgcatga 267
Query: 615 gaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccactaggag 674
||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 268 gaagatcgagcacaaggcttacggtgatgatgagatcatcagaatcctcaccaccaggag 327
Query: 675 caaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaa 734
|||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| |||||
Sbjct: 328 caaagctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaatcac 387
Query: 735 caaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccg 794
|||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||
Sbjct: 388 caaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccg 447
Query: 795 gtgcttcagttgccctgacaggtactttgagaaggt 830
|||||||| |||||||| |||||||||||||||||
Sbjct: 448 gtgcttcacctgccctgataggtactttgagaaggt 483
>gb|BJ463409.1|BJ463409 BJ463409 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i13 5', mRNA sequence
Length = 468
Score = 458 bits (231), Expect = e-127
Identities = 390/443 (88%)
Strand = Plus / Plus
Query: 388 gggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgcgacc 447
||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||| |
Sbjct: 23 gggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcgccgtc 82
Query: 448 aggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgtc 507
|||||||| || || || || |||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 83 aggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgtc 142
Query: 508 actggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacca 567
|| || |||||||||||||| ||||||||||||||||| | ||||||||||| ||||||
Sbjct: 143 accggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggacca 202
Query: 568 gaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcac 627
||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | |||
Sbjct: 203 gaggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcac 262
Query: 628 aaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctg 687
||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 263 aaggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctg 322
Query: 688 attgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaag 747
|||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||||||||||
Sbjct: 323 cttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaag 382
Query: 748 gctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgc 807
||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| |||
Sbjct: 383 gctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgc 442
Query: 808 cctgacaggtactttgagaaggt 830
||||| |||||||||||||||||
Sbjct: 443 cctgataggtactttgagaaggt 465
>gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G09T 5',
mRNA sequence
Length = 700
Score = 452 bits (228), Expect = e-125
Identities = 378/428 (88%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 272 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 331
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 332 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 391
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 392 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 451
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 452 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 511
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 512 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 571
Query: 551 accgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttc 610
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
Sbjct: 572 accgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgc 631
Query: 611 atgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccacta 670
||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 632 atgagaagatcgagcacaaggcttacggtgatgatgagatcatcagaatcctcaccacca 691
Query: 671 ggagcaaa 678
||||||||
Sbjct: 692 ggagcaaa 699
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 106 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 165
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 166 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 224
>gb|AV914553.1|AV914553 AV914553 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6o20 5', mRNA sequence
Length = 515
Score = 446 bits (225), Expect = e-124
Identities = 432/499 (86%), Gaps = 2/499 (0%)
Strand = Plus / Plus
Query: 332 acccagcggagcgcgacgcggtgctggccaacgagg-cggcgcggaagtggaagcccggg 390
|||| |||| ||| ||||||||||| ||||||||| | || ||||||| | || |||
Sbjct: 17 accccgcggngcgggacgcggtgctcgccaacgagnaccgccaagaagtggcacccgggg 76
Query: 391 aaccgtgtgctcgtcgag-atcgcctgcacgcgcacctccgcgcagatcttcgcgaccag 449
|||| |||||||||||| ||||||||| ||||| |||||||||| ||||||| |||
Sbjct: 77 aaccccgtgctcgtcgagnatcgcctgctcgcgcggctccgcgcagctcttcgccgtcag 136
Query: 450 gcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgtcac 509
|||||| || || || || |||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 137 gcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgtcac 196
Query: 510 tggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|| |||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 197 cggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggaccaga 256
Query: 570 ggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatcacaa 629
||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | |||||
Sbjct: 257 ggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcacaa 316
Query: 630 ggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctgat 689
||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct: 317 ggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctgct 376
Query: 690 tgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaaggc 749
||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 377 tgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaaggc 436
Query: 750 tgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgccc 809
||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| |||||
Sbjct: 437 tgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgccc 496
Query: 810 tgacaggtactttgagaag 828
||| |||||||||||||||
Sbjct: 497 tgataggtactttgagaag 515
>gb|BU979145.1|BU979145 HA15E14r HA Hordeum vulgare subsp. vulgare cDNA clone HA15E14
5-PRIME, mRNA sequence
Length = 434
Score = 442 bits (223), Expect = e-122
Identities = 376/427 (88%)
Strand = Plus / Plus
Query: 397 gtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgcgaccaggcaggct 456
||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||
Sbjct: 8 gtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcgccgtcaggcaggcc 67
Query: 457 tatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgtcactggggac 516
|| || || || |||||||||||||| ||||| ||| |||||||||||||||| || |||
Sbjct: 68 taccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgtcaccggcgac 127
Query: 517 ttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccagaggtcaac 576
||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct: 128 ttccgcaagctcttggtgccacttgtaagctcataccgctatgagggaccagaggtcaac 187
Query: 577 acaaggttggcacactcagaagccaaactacttcatgagaagatccatcacaaggcttac 636
|||||||||||||| ||||| |||||| |||| |||||||||||| | ||||||||||||
Sbjct: 188 acaaggttggcacattcagaggccaaaatactgcatgagaagatcgagcacaaggcttac 247
Query: 637 agtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagctgattgctaca 696
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||
Sbjct: 248 ggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagctgcttgcaaca 307
Query: 697 ttcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgacccc 756
||||| | |||||||| ||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 308 ctcaataactacaatgacacatttggtcacccaatcaccaaggatctgaaggctgacccc 367
Query: 757 caggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacagg 816
|||| |||| ||||| ||| ||||||||| | ||||||||||||| |||||||| |||
Sbjct: 368 aaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgccctgatagg 427
Query: 817 tactttg 823
|||||||
Sbjct: 428 tactttg 434
>gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002F12f, mRNA sequence
Length = 862
Score = 422 bits (213), Expect = e-116
Identities = 429/501 (85%)
Strand = Plus / Plus
Query: 447 caggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgt 506
||||||||| || || || || |||||||||||||| ||||| ||| |||||||||||||
Sbjct: 239 caggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgt 298
Query: 507 cactggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacc 566
||| || |||||||||||||| ||||||||||||||||| | ||||||||||| |||||
Sbjct: 299 caccggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggacc 358
Query: 567 agaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatca 626
|||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | ||
Sbjct: 359 agaggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagca 418
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagct 686
||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 419 taaggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagct 478
Query: 687 gattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaa 746
| |||| ||| ||||| | |||||||| ||||||| |||| ||||| ||||||||||||
Sbjct: 479 gcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaa 538
Query: 747 ggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttg 806
|||||||||| |||| |||| ||||| ||| || |||||| | ||||||||||||| ||
Sbjct: 539 ggctgaccccaaggatgagttcctcaaaacccttcgggcggttatccggtgcttcacctg 598
Query: 807 ccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcacagatga 866
|||||| ||||||||||| || || || || |||||| || || || || |||||
Sbjct: 599 ccctgataggtactttgaaaaagttgcccggttggccattgcaaggaatggaaccgatga 658
Query: 867 gaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactgattaagga 926
||||||||| || |||||||| || |||||||| ||||||||||| || ||||| || ||
Sbjct: 659 gaactccctcactagggtcataacgacccgcgccgaggtggacctgaagctgatcaaaga 718
Query: 927 ggcgtaccagaagaggaacag 947
||||| ||| |||||||||||
Sbjct: 719 ggcgtcccaaaagaggaacag 739
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 75 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 134
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 135 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 193
>gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G03
5-PRIME, mRNA sequence
Length = 636
Score = 381 bits (192), Expect = e-104
Identities = 336/384 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 253 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 312
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 313 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 372
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 373 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 432
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 433 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 492
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 493 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 552
Query: 551 accgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttc 610
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
Sbjct: 553 accgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatactgc 612
Query: 611 atgagaagatccatcacaaggctt 634
||||||||||| | ||||||||||
Sbjct: 613 atgagaagatcgagcacaaggctt 636
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 87 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 146
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 147 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 205
>gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D05f, mRNA sequence
Length = 628
Score = 377 bits (190), Expect = e-103
Identities = 352/405 (86%), Gaps = 1/405 (0%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 224 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 283
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 284 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 343
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 344 ccaagaagtggcaccccgggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 403
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 404 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 463
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 464 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 523
Query: 551 accgctatgatggaccagaggtcaacacaagg-ttggcacactcagaagccaaactactt 609
|||||||||| ||||||||||||||||||||| |||||||| ||| | |||||| ||||
Sbjct: 524 accgctatgagggaccagaggtcaacacaaggtttggcacattcanaggccaaaatactg 583
Query: 610 catgagaagatccatcacaaggcttacagtgatgatgagatcatc 654
|||||| ||||| | || ||||||||| | |||||||||||||||
Sbjct: 584 catgagcagatcgagcataaggcttacggggatgatgagatcatc 628
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 58 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 117
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 118 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 176
>gb|CB881016.1|CB881016 HM08I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08I11
3-PRIME, mRNA sequence
Length = 700
Score = 373 bits (188), Expect = e-101
Identities = 362/420 (86%)
Strand = Plus / Minus
Query: 610 catgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccact 669
|||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 699 catgagaagatcgagcacaaggcttacggtgatgatgagatcatcagaatcctcaccacc 640
Query: 670 aggagcaaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccga 729
||||||||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| |
Sbjct: 639 aggagcaaagctcagctgcttgcaacactcaataactacaatgacacatttggtcaccca 580
Query: 730 atcaacaaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatc 789
|||| |||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| |
Sbjct: 579 atcaccaaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggtt 520
Query: 790 atccggtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcg 849
||||||||||||| |||||||| ||||||||||||||||| || ||| |||||| ||
Sbjct: 519 atccggtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgca 460
Query: 850 gggctaggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggac 909
||| || || |||||||||||||| || |||||||| || |||||||| |||||||||
Sbjct: 459 gggaatggaaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggac 400
Query: 910 ctcaaactgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtc 969
|| || ||||| || ||||| ||||||||||||||||| || || ||||| |||||||
Sbjct: 399 ctgaagctgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtc 340
Query: 970 gcgggggacacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|| || |||||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 339 gcaggcgacacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 280
>gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03M19u 5', mRNA sequence
Length = 657
Score = 363 bits (183), Expect = 9e-099
Identities = 351/403 (87%), Gaps = 3/403 (0%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 255 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 314
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 315 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 374
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 375 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 434
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 435 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 494
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 495 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 554
Query: 551 accgctatgatggaccagaggtcaacacaagg-ttggcacactcagaagccaaactactt 609
|||||||||| ||||||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 555 accgctatgagggaccagaggtcaacacaaggtttggcacattcagaggccaaaatactg 614
Query: 610 catg-agaagatccatcacaaggcttacagtg-atgatgagat 650
|||| |||||||| | |||||||||||| ||| ||||||||||
Sbjct: 615 catgaagaagatcgagcacaaggcttacggtgaatgatgagat 657
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 89 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 148
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 149 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 207
>gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K18
5-PRIME, mRNA sequence
Length = 618
Score = 353 bits (178), Expect = 9e-096
Identities = 313/358 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 257 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 316
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 317 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 376
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 377 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 436
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 437 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 496
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 497 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 556
Query: 551 accgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactact 608
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct: 557 accgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaaatact 614
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 91 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 150
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 151 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 209
>gb|CA020204.1|CA020204 HV14K06r HV Hordeum vulgare subsp. vulgare cDNA clone HV14K06
5-PRIME, mRNA sequence
Length = 580
Score = 349 bits (176), Expect = 1e-094
Identities = 284/320 (88%)
Strand = Plus / Plus
Query: 447 caggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgctgcgcacgt 506
||||||||| || || || || |||||||||||||| ||||| ||| |||||||||||||
Sbjct: 260 caggcaggcctaccatgaccgcttcaagcgctcgctcgaggaggacgtcgctgcgcacgt 319
Query: 507 cactggggacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggacc 566
||| || |||||||||||||| ||||||||||||||||| | ||||||||||| |||||
Sbjct: 320 caccggcgacttccgcaagctcttggtgccacttgtaagctcataccgctatgagggacc 379
Query: 567 agaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatccatca 626
|||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| | ||
Sbjct: 380 agaggtcaacacaaggttggcacattcagaggccaaaatactgcatgagaagatcgagca 439
Query: 627 caaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacctcagct 686
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 440 caaggcttacggtgatgatgagatcatcagaatcctcaccaccaggagcaaagctcagct 499
Query: 687 gattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggatctgaa 746
| |||| ||| ||||| | |||||||| ||||||| |||| ||||| ||||||||||||
Sbjct: 500 gcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggatctgaa 559
Query: 747 ggctgacccccaggacgagt 766
|||||||||| |||| ||||
Sbjct: 560 ggctgaccccaaggatgagt 579
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 96 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 155
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 156 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 214
>gb|AL509313.1|AL509313 AL509313 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G09u 3',
mRNA sequence
Length = 636
Score = 333 bits (168), Expect = 8e-090
Identities = 359/420 (85%), Gaps = 2/420 (0%)
Strand = Plus / Minus
Query: 612 tgagaagatccatcacaaggcttacagtgatgatgagatcatcag-aatcc-tcaccact 669
|||||||||| | |||||||||||| ||| ||||||||||||||| ||||| |||||||
Sbjct: 571 tgagaagatcgagcacaaggcttacggtgttgatgagatcatcaggaatccctcaccacc 512
Query: 670 aggagcaaacctcagctgattgctacattcaatcattacaatgatgcatttggccaccga 729
||||||||| |||||||| |||| ||| ||||| | |||||||| ||||||| |||| |
Sbjct: 511 aggagcaaagctcagctgcttgcaacactcaataactacaatgacacatttggtcaccca 452
Query: 730 atcaacaaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatc 789
|||| |||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| |
Sbjct: 451 atcaccaaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggtt 392
Query: 790 atccggtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcg 849
||||||||||||| |||||||| ||||||||||||||||| || ||| |||||| ||
Sbjct: 391 atccggtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgca 332
Query: 850 gggctaggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggac 909
||| || || |||||||||||||| || |||||||| || |||||||| |||||||||
Sbjct: 331 gggaatggaaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggac 272
Query: 910 ctcaaactgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtc 969
|| || ||||| || ||||| ||||||||||||||||| || || ||||| |||||||
Sbjct: 271 ctgaagctgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtc 212
Query: 970 gcgggggacacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|| || |||||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 211 gcaggcgacacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 152
>gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF21F01
5-PRIME, mRNA sequence
Length = 536
Score = 333 bits (168), Expect = 8e-090
Identities = 381/452 (84%)
Strand = Plus / Plus
Query: 250 gcctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagagg 309
||||||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 45 gcctacggcgaggagctgctccgctccatcaccgacgagatccacggcaagttcgagagg 104
Query: 310 gccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcg 369
|| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 105 gcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggccaacgaggag 164
Query: 370 gcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctcc 429
|| ||||||||| || ||| ||| | ||||||||||||||||||| |||||||| ||
Sbjct: 165 gccaagaagtggaacccggggggccgcgcgctcgtcgagatcgcctgcgcgcgcaccccc 224
Query: 430 gcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaa 489
||||| ||||||| ||| |||||| || ||||| || |||||||||||||| |||||
Sbjct: 225 gcgcacctcttcgccgccaagcaggcctaccacgaccgcttcaagcgctcgctcgaggag 284
Query: 490 gacatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtact 549
||| |||| ||||||||||| || |||||||||||||| |||||||| |||||||| |
Sbjct: 285 gacgtcgccgcgcacgtcaccggcgacttccgcaagcttttggtgcctcttgtaagcgcg 344
Query: 550 taccgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactactt 609
|||||||||||||| || ||||| || || |||||| ||||| |||||||| ||||
Sbjct: 345 taccgctatgatggcccggaggtgaatacgtcgttggcgcactctgaagccaagatactc 404
Query: 610 catgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccact 669
|||| ||||||| | ||||| ||||||||||||||| || |||| || ||||| ||
Sbjct: 405 catgcgaagatcagcgagaaggcctacagtgatgatgaggtcgtcaggattctcactaca 464
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| ||||||| |||| ||||||||
Sbjct: 465 aggagcaaagctcagctacttgcaacattcaa 496
>gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001K22f, mRNA sequence
Length = 862
Score = 321 bits (162), Expect = 3e-086
Identities = 373/442 (84%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 243 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 302
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 303 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 362
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | |||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 363 ccaagaagtggcaccccgggaaccccgtgctcgtcgagatcgcctgctcgcgcgggtccg 422
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 423 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 482
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||| || || ||||| |||||||| ||||||||||||| ||| | |
Sbjct: 483 acggtcctgcgcacgtgaccggcgacttgcgcaagctcttggtgccacttggaagctcat 542
Query: 551 accgctatgatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttc 610
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct: 543 accgctatgagggaccagaggtcaacacaaggttggcacattcagaggccaaa-tactgg 601
Query: 611 atgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccacta 670
||||||||| | | | |||| |||| | ||||||||| ||| |||||||| ||||| |
Sbjct: 602 atgagaagaacgagcctaagggttacggggatgatgaggacattagaatccttaccacca 661
Query: 671 ggagcaaacctcagctgattgc 692
|||||||| || ||||| ||||
Sbjct: 662 ggagcaaagcttagctgcttgc 683
Score = 67.9 bits (34), Expect = 8e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 75 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 134
Query: 145 cgcaaagcattccaagggtggggcacgaacgagg 178
||||| || |||||||||||||||||||||||||
Sbjct: 135 cgcaaggccttccaagggtggggcacgaacgagg 168
>gb|CV057758.1|CV057758 BNEL30e11 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL30e11 5' similar to annexin p33, mRNA
sequence
Length = 584
Score = 317 bits (160), Expect = 5e-085
Identities = 392/468 (83%), Gaps = 1/468 (0%)
Strand = Plus / Minus
Query: 562 ggaccagaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaagatc 621
|||||| |||||||| ||| |||||||| ||| | ||||| | || ||| ||||||||
Sbjct: 572 ggaccaaaggtcaaccaaagtttggcacattcaaagcccaaaattctgcataagaagatc 513
Query: 622 catcacaaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaacct 681
| |||||||||| || |||||||||||||||||||||||||| | ||||||||| |
Sbjct: 512 gagcacaaggcttcgggt-atgatgagatcatcagaatcctcacccccaggagcaaagtt 454
Query: 682 cagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaaggat 741
||| || |||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||||
Sbjct: 453 cagttgcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaaggat 394
Query: 742 ctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttc 801
||||||||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||
Sbjct: 393 ctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttc 334
Query: 802 agttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcaca 861
| |||||||| ||||||||||||||||| || ||| |||||| || ||| || ||
Sbjct: 333 acctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatggaacc 274
Query: 862 gatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactgatt 921
|||||||||||||| || |||||||| || |||||||| ||||||||||| || |||||
Sbjct: 273 gatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagctgatc 214
Query: 922 aaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggacacc 981
|| ||||| ||||||||||||||||| || || ||||| ||||||||| || ||||||
Sbjct: 213 aaagaggcataccagaagaggaacagtgtccctttggagaaggccgtcgcaggcgacacc 154
Query: 982 tccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 153 tccggcgactacgagaccatgctccttgccctcctggggaaggagtga 106
>gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. vulgare cDNA clone HV07B03
5-PRIME, mRNA sequence
Length = 530
Score = 315 bits (159), Expect = 2e-084
Identities = 373/443 (84%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 259 gaggagctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatc 318
|||||||| |||||||||||||| ||||||||| |||| | ||||||||||| ||||||
Sbjct: 1 gaggagctgctccgctccatcaccgacgagatccacggcaagttcgagagggcggtgatc 60
Query: 319 ctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcggcgcggaag 378
| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| | ||||
Sbjct: 61 cagtggacgctggacccggcggagcgggacgcggtgctggccaacgaggaggc-cagaag 119
Query: 379 tggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatc 438
||||| || ||| ||| | ||||||||||||||||||| |||||||| ||||||| ||
Sbjct: 120 tggaacccggggggccgcgcgctcgtcgagatcgcctgcgcgcgcacccccgcgcacctc 179
Query: 439 ttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaagacatcgct 498
||||| ||| |||||| || ||||| || |||||||||||||| ||||| ||| ||||
Sbjct: 180 ttcgccgccaagcaggcctaccacgaccgcttcaagcgctcgctcgaggaggacgtcgcc 239
Query: 499 gcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtacttaccgctat 558
||||||||||| || |||||||||||||| |||||||| |||||||| | |||||||||
Sbjct: 240 gcgcacgtcaccggcgacttccgcaagcttttggtgcctcttgtaagcgcgtaccgctat 299
Query: 559 gatggaccagaggtcaacacaaggttggcacactcagaagccaaactacttcatgagaag 618
||||| || ||||| || || |||||| ||||| |||||||| |||| |||| ||||
Sbjct: 300 gatggcccggaggtgaatacgtcgttggcgcactctgaagccaagatactccatgcgaag 359
Query: 619 atccatcacaaggcttacagtgatgatgagatcatcagaatcctcaccactaggagcaaa 678
||| | ||||| ||||||||||||||| || |||| || ||||| || |||||||||
Sbjct: 360 atcagcgagaaggcctacagtgatgatgaggtcgtcaggattctcactacaaggagcaaa 419
Query: 679 cctcagctgattgctacattcaa 701
||||||| |||| ||||||||
Sbjct: 420 gctcagctacttgcaacattcaa 442
>gb|AJ434640.1|AJ434640 AJ434640 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019E04F1, mRNA sequence
Length = 397
Score = 307 bits (155), Expect = 5e-082
Identities = 320/375 (85%)
Strand = Plus / Plus
Query: 655 agaatcctcaccactaggagcaaacctcagctgattgctacattcaatcattacaatgat 714
|||||||||||||| ||||||||| |||||||| |||| ||| ||||| | ||||||||
Sbjct: 1 agaatcctcaccaccaggagcaaagctcagctgcttgcaacactcaataactacaatgac 60
Query: 715 gcatttggccaccgaatcaacaaggatctgaaggctgacccccaggacgagtacctcaga 774
||||||| |||| ||||| |||||||||||||||||||||| |||| |||| ||||| |
Sbjct: 61 acatttggtcacccaatcaccaaggatctgaaggctgaccccaaggatgagttcctcaaa 120
Query: 775 acgctgcgggcgatcatccggtgcttcagttgccctgacaggtactttgagaaggtggct 834
|| ||||||||| | ||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 121 accctgcgggcggttatccggtgcttcacctgccctgataggtactttgagaaggttgcc 180
Query: 835 aggcaggccatagcggggctaggcacagatgagaactccctgaccagggtcatcaccacc 894
||| |||||| || ||| || || |||||||||||||| || |||||||| || |||
Sbjct: 181 aggttggccattgcagggaatggaaccgatgagaactccctcactagggtcataacgacc 240
Query: 895 cgcgctgaggtggacctcaaactgattaaggaggcgtaccagaagaggaacagcgtgccg 954
||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| || ||
Sbjct: 241 cgcgccgaggtggacctgaagctgatcaaagaggcataccagaagaggaacagtgtcccc 300
Query: 955 ctggagcgggccgtcgcgggggacacctccggcgactacgagagcatgctcctcgcgctc 1014
||||| ||||||||| || |||||||||||||||||||||| ||||||||| || |||
Sbjct: 301 ttggagaaggccgtcgcaggcgacacctccggcgactacgagaccatgctccttgccctc 360
Query: 1015 ctggggcaggagtga 1029
|||||| ||||||||
Sbjct: 361 ctggggaaggagtga 375
>gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i03 5', mRNA sequence
Length = 546
Score = 291 bits (147), Expect = 3e-077
Identities = 258/295 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 243 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 302
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 303 ccgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 362
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 363 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 422
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 423 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 482
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaag 545
|| |||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 483 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaag 537
Score = 117 bits (59), Expect = 9e-025
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
|||||||||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 77 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 136
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 137 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 195
>gb|BU994969.1|BU994969 HM08M12r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M12
5-PRIME, mRNA sequence
Length = 553
Score = 289 bits (146), Expect = 1e-076
Identities = 435/530 (82%), Gaps = 1/530 (0%)
Strand = Plus / Plus
Query: 301 ttcgagagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggcc 360
||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 3 ttcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcc 62
Query: 361 aacgaggcggcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacg 420
||||||| ||| | ||||||||| || ||| ||| | ||||||||||||||||||| ||
Sbjct: 63 aacgaggaggc-cagaagtggaacccggggggccgcgcgctcgtcgagatcgcctgcgcg 121
Query: 421 cgcacctccgcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcg 480
|||||| ||||||| ||||||| ||| |||||| || ||||| || ||||||||||||
Sbjct: 122 cgcacccccgcgcacctcttcgccgccaagcaggcctaccacgaccgcttcaagcgctcg 181
Query: 481 cttgaggaagacatcgctgcgcacgtcactggggacttccgcaagctattggtgccactt 540
|| ||||| ||| |||| ||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 182 ctcgaggaggacgtcgccgcgcacgtcaccggcgacttccgcaagcttttggtgcctctt 241
Query: 541 gtaagtacttaccgctatgatggaccagaggtcaacacaaggttggcacactcagaagcc 600
||||| | |||||||||||||| || ||||| || || |||||| ||||| ||||||
Sbjct: 242 gtaagcgcgtaccgctatgatggcccggaggtgaatacgtcgttggcgcactctgaagcc 301
Query: 601 aaactacttcatgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatc 660
|| |||| |||| ||||||| | ||||| ||||||||||||||| || |||| ||
Sbjct: 302 aagatactccatgcgaagatcagcgagaaggcctacagtgatgatgaggtcgtcaggatt 361
Query: 661 ctcaccactaggagcaaacctcagctgattgctacattcaatcattacaatgatgcattt 720
||||| || ||||||||| ||||||| |||| |||||||| ||||||||| ||
Sbjct: 362 ctcactacaaggagcaaagctcagctacttgcaacattcaacagctacaatgatcagttc 421
Query: 721 ggccaccgaatcaacaaggatctgaaggctgacccccaggacgagtacctcagaacgctg 780
| |||| |||| |||||| || |||| || ||| ||||||||| |||| || |||
Sbjct: 422 agtcaccctatcaccaaggacctcaaggaagatcccaaggacgagttcctctcgaccctg 481
Query: 781 cgggcgatcatccggtgcttcagttgccctgacaggtactttgagaaggt 830
|||||||||| |||| |||| |||||| ||||| ||||||||||||||
Sbjct: 482 agggcgatcataaggtgtttcacttgccccgacagatactttgagaaggt 531
>gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08I11
5-PRIME, mRNA sequence
Length = 568
Score = 287 bits (145), Expect = 4e-076
Identities = 268/309 (86%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 260 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 319
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 320 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 379
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 380 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 439
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 440 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 499
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaagtactt 550
|| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
Sbjct: 500 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaagctcat 559
Query: 551 accgctatg 559
|||||||||
Sbjct: 560 accgctatg 568
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 94 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 153
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 154 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 212
>gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43D05
5-PRIME, mRNA sequence
Length = 575
Score = 283 bits (143), Expect = 7e-075
Identities = 257/295 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 276 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 335
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 336 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 395
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 396 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 455
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 456 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 515
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaag 545
|| |||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 516 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttggtgccacttgtaag 570
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 110 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 169
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 170 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 228
>gb|AV919630.1|AV919630 AV919630 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6o20 3', mRNA sequence
Length = 685
Score = 274 bits (138), Expect = 7e-072
Identities = 297/350 (84%)
Strand = Plus / Minus
Query: 680 ctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaagg 739
|||||||| |||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||
Sbjct: 683 ctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaagg 624
Query: 740 atctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgct 799
||||||||||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||
Sbjct: 623 atctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgct 564
Query: 800 tcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggca 859
||| |||||||| ||||||||||||||||| || ||| |||||| || ||| || |
Sbjct: 563 tcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatggaa 504
Query: 860 cagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactga 919
| |||||||||||||| || |||||||| || |||||||| ||||||||||| || ||||
Sbjct: 503 ccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagctga 444
Query: 920 ttaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggaca 979
| || ||||| ||||||||||||||||| || || ||||| ||||||||| || ||||
Sbjct: 443 tcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcgaca 384
Query: 980 cctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 383 cctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 334
>gb|CA027202.1|CA027202 HZ58D01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58D01
5-PRIME, mRNA sequence
Length = 394
Score = 266 bits (134), Expect = 2e-069
Identities = 317/378 (83%)
Strand = Plus / Plus
Query: 301 ttcgagagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggcc 360
||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 16 ttcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcc 75
Query: 361 aacgaggcggcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacg 420
||||||| ||| ||||||||| || ||| ||| | ||||||||||||||||||| ||
Sbjct: 76 aacgaggaggccaagaagtggaacccggggggccgcgcgctcgtcgagatcgcctgcgcg 135
Query: 421 cgcacctccgcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcg 480
|||||| ||||||| ||||||| ||| |||||| || ||||| || ||||||||||||
Sbjct: 136 cgcacccccgcgcacctcttcgccgccaagcaggcctaccacgaccgcttcaagcgctcg 195
Query: 481 cttgaggaagacatcgctgcgcacgtcactggggacttccgcaagctattggtgccactt 540
|| ||||| ||| |||| ||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 196 ctcgaggaggacgtcgccgcgcacgtcaccggcgacttccgcaagcttttggtgcctctt 255
Query: 541 gtaagtacttaccgctatgatggaccagaggtcaacacaaggttggcacactcagaagcc 600
||||| | |||||||||||||| || ||||| || || |||||| ||||| ||||||
Sbjct: 256 gtaagcgcgtaccgctatgatggcccggaggtgaatacgtcgttggcgcactctgaagcc 315
Query: 601 aaactacttcatgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatc 660
|| |||| |||| ||||||| | ||||| ||||||||||||||| || |||| ||
Sbjct: 316 aagatactccatgcgaagatcagcgagaaggcctacagtgatgatgaggtcgtcaggatt 375
Query: 661 ctcaccactaggagcaaa 678
||||| || |||||||||
Sbjct: 376 ctcactacaaggagcaaa 393
>gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N11V 5',
mRNA sequence
Length = 568
Score = 260 bits (131), Expect = 1e-067
Identities = 253/294 (86%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 244 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 303
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| |||| |||| | |
Sbjct: 304 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccancgagaccg 363
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 364 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 423
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 424 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 483
Query: 491 acatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaa 544
|| |||||||||||||||| || |||||||||||||| |||| | |||||||||
Sbjct: 484 acgtcgctgcgcacgtcaccggcgacttccgcaagctcttgggggcacttgtaa 537
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 78 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 137
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 138 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 196
>gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57J07
5-PRIME, mRNA sequence
Length = 387
Score = 248 bits (125), Expect = 4e-064
Identities = 305/365 (83%)
Strand = Plus / Plus
Query: 301 ttcgagagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggcc 360
||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 16 ttcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcc 75
Query: 361 aacgaggcggcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacg 420
||||||| ||| |||||||| || ||| ||| | ||||||||||||||||||| ||
Sbjct: 76 aacgaggaggccaagaagtggaccccggggggccgcgcgctcgtcgagatcgcctgcgcg 135
Query: 421 cgcacctccgcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcg 480
|||||| ||||||| ||||||| ||| |||||| || ||||| || ||||||||||||
Sbjct: 136 cgcacccccgcgcacctcttcgccgccaagcaggcctaccacgaccgcttcaagcgctcg 195
Query: 481 cttgaggaagacatcgctgcgcacgtcactggggacttccgcaagctattggtgccactt 540
|| ||||| ||| |||| ||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 196 ctcgaggaggacgtcgccgcgcacgtcaccggcgacttccgcaagcttttggtgcctctt 255
Query: 541 gtaagtacttaccgctatgatggaccagaggtcaacacaaggttggcacactcagaagcc 600
||||| | |||||||||||||| || ||||| || || |||||| ||||| ||||||
Sbjct: 256 gtaagcgcgtaccgctatgatggcccggaggtgaatacgtcgttggcgcactctgaagcc 315
Query: 601 aaactacttcatgagaagatccatcacaaggcttacagtgatgatgagatcatcagaatc 660
|| |||| |||| ||||||| | ||||| ||||||||||||||| || |||| ||
Sbjct: 316 aagatactccatgcgaagatcagcgagaaggcctacagtgatgatgaggtcgtcaggatt 375
Query: 661 ctcac 665
|||||
Sbjct: 376 ctcac 380
>gb|AL509444.1|AL509444 AL509444 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N11u 3',
mRNA sequence
Length = 695
Score = 244 bits (123), Expect = 6e-063
Identities = 273/324 (84%)
Strand = Plus / Minus
Query: 706 tacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgacccccaggacgag 765
|||||||| ||||||| |||| |||| ||||||| |||||||||||||| |||| |||
Sbjct: 577 tacaatgacacatttggtcacccaatcnccaaggatntgaaggctgaccccaaggatgag 518
Query: 766 tacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacaggtactttgag 825
| ||||| ||| ||||||||| | ||||||||||||| |||||||| ||||||||||||
Sbjct: 517 ttcctcaaaaccctgcgggcggttatccggtgcttcacctgccctgataggtactttgag 458
Query: 826 aaggtggctaggcaggccatagcggggctaggcacagatgagaactccctgaccagggtc 885
||||| || ||| |||||| || ||| || || |||||||||||||| || ||||||
Sbjct: 457 aaggttgccaggttggccattgcagggaatggaaccgatgagaactccctcactagggtc 398
Query: 886 atcaccacccgcgctgaggtggacctcaaactgattaaggaggcgtaccagaagaggaac 945
|| || |||||||| ||||||||||| || ||||| || ||||| |||||||||||||||
Sbjct: 397 ataacgacccgcgccgaggtggacctgaagctgatcaaagaggcataccagaagaggaac 338
Query: 946 agcgtgccgctggagcgggccgtcgcgggggacacctccggcgactacgagagcatgctc 1005
|| || || |||| ||||||||| || |||||||||||||||||||||| |||||||
Sbjct: 337 agtgtccccttgganaaggccgtcgcaggcgacacctccggcgactacgagaccatgctc 278
Query: 1006 ctcgcgctcctggggcaggagtga 1029
|| || ||||||||| ||||||||
Sbjct: 277 cttgccctcctggggaaggagtga 254
>gb|AV918551.1|AV918551 AV918551 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21h04 3', mRNA sequence
Length = 538
Score = 244 bits (123), Expect = 6e-063
Identities = 252/295 (85%)
Strand = Plus / Minus
Query: 735 caaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccg 794
|||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||
Sbjct: 535 caaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccg 476
Query: 795 gtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggct 854
|||||||| |||||||| ||||||||||||||||| || ||| |||||| || |||
Sbjct: 475 gtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaa 416
Query: 855 aggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaa 914
|| || |||||||||||||| || |||||||| || |||||||| ||||||||||| ||
Sbjct: 415 tggaaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaa 356
Query: 915 actgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggg 974
||||| || ||||| ||||||||||||||||| || || ||||| ||||||||| ||
Sbjct: 355 gctgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcagg 296
Query: 975 ggacacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 295 cgacacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 241
>gb|CB880909.1|CB880909 HM08D01w HM Hordeum vulgare subsp. vulgare cDNA clone HM08D01
3-PRIME, mRNA sequence
Length = 632
Score = 244 bits (123), Expect = 6e-063
Identities = 252/295 (85%)
Strand = Plus / Minus
Query: 735 caaggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccg 794
|||||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||
Sbjct: 632 caaggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccg 573
Query: 795 gtgcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggct 854
|||||||| |||||||| ||||||||||||||||| || ||| |||||| || |||
Sbjct: 572 gtgcttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaa 513
Query: 855 aggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaa 914
|| || |||||||||||||| || |||||||| || |||||||| ||||||||||| ||
Sbjct: 512 tggaaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaa 453
Query: 915 actgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggg 974
||||| || ||||| ||||||||||||||||| || || ||||| ||||||||| ||
Sbjct: 452 gctgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcagg 393
Query: 975 ggacacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 392 cgacacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 338
>gb|BM442857.2|BM442857 EBro02_SQ001_J08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_J08 5', mRNA sequence
Length = 473
Score = 238 bits (120), Expect = 4e-061
Identities = 249/292 (85%)
Strand = Plus / Plus
Query: 738 ggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtg 797
||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||
Sbjct: 1 ggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtg 60
Query: 798 cttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctagg 857
||||| |||||||| ||||||||||||||||| || ||| |||||| || ||| ||
Sbjct: 61 cttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatgg 120
Query: 858 cacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaact 917
|| |||||||||||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct: 121 aaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagct 180
Query: 918 gattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggggga 977
||| || ||||| ||||||||||||||||| || || ||||| ||||||||| || ||
Sbjct: 181 gatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcga 240
Query: 978 cacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 241 cacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 292
>gb|BM442871.2|BM442871 EBro02_SQ001_K09_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_K09 5', mRNA sequence
Length = 582
Score = 238 bits (120), Expect = 4e-061
Identities = 249/292 (85%)
Strand = Plus / Plus
Query: 738 ggatctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtg 797
||||||||||||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||
Sbjct: 1 ggatctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtg 60
Query: 798 cttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctagg 857
||||| |||||||| ||||||||||||||||| || ||| |||||| || ||| ||
Sbjct: 61 cttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatgg 120
Query: 858 cacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaact 917
|| |||||||||||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct: 121 aaccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagct 180
Query: 918 gattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggggga 977
||| || ||||| ||||||||||||||||| || || ||||| ||||||||| || ||
Sbjct: 181 gatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcga 240
Query: 978 cacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
|||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 241 cacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 292
>gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003K19f, mRNA sequence
Length = 524
Score = 232 bits (117), Expect = 2e-059
Identities = 251/296 (84%)
Strand = Plus / Plus
Query: 250 gcctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagagg 309
||||||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 225 gcctacggcgaggagctgctccgctccatcaccgacgagatccacggcaagttcgagagg 284
Query: 310 gccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcg 369
|| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 285 gcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggccaacgaggag 344
Query: 370 gcgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctcc 429
|| ||||||||| || ||| ||| | |||||| |||||||||||| |||||||| ||
Sbjct: 345 gccaagaagtggaacccggggggccgcgcgctcgttgagatcgcctgcgcgcgcaccccc 404
Query: 430 gcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaa 489
||||| ||||||| ||| |||||| || ||||| || || ||||||||||| || ||
Sbjct: 405 gcgcacctcttcgccgccaagcaggcctaccacgaccgtttgaagcgctcgctcgaagag 464
Query: 490 gacatcgctgcgcacgtcactggggacttccgcaagctattggtgccacttgtaag 545
||| | || |||||||| || || |||||||||||||| ||||||| ||||||||
Sbjct: 465 gacgtngccgcgcacgtaaccggcgacttccgcaagcttgtggtgcctcttgtaag 520
Score = 61.9 bits (31), Expect = 5e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 119 ccgtcgccgatgactgcgaccagctgcgcaaagcattccaagggtggggcacgaacgagg 178
|||| ||||| |||||||| ||||| ||||| || ||| ||||||||||| ||||||
Sbjct: 94 ccgtggccgaggactgcgagcagctccgcaaggcgttcgccgggtggggcaccaacgagc 153
Query: 179 cgctcatcatctccatcct 197
||||||||||||||||||
Sbjct: 154 ggctcatcatctccatcct 172
>gb|AV913257.1|AV913257 AV913257 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21h04 5', mRNA sequence
Length = 314
Score = 232 bits (117), Expect = 2e-059
Identities = 264/313 (84%)
Strand = Plus / Plus
Query: 680 ctcagctgattgctacattcaatcattacaatgatgcatttggccaccgaatcaacaagg 739
|||||||| |||| ||| ||||| | |||||||| ||||||| |||| ||||| |||||
Sbjct: 2 ctcagctgcttgcaacactcaataactacaatgacacatttggtcacccaatcaccaagg 61
Query: 740 atctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgct 799
||||||||||||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||
Sbjct: 62 atctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgct 121
Query: 800 tcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggca 859
||| |||||||| ||||||||||||||||| || ||| |||||| || ||| || |
Sbjct: 122 tcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatggaa 181
Query: 860 cagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactga 919
| |||||||||||||| || |||||||| || |||||||| ||||||||||| || ||||
Sbjct: 182 ccgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagctga 241
Query: 920 ttaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggaca 979
| || ||||| ||||||||||||||||| || || ||||| ||||||||| || ||||
Sbjct: 242 tcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcgaca 301
Query: 980 cctccggcgacta 992
|||||||||||||
Sbjct: 302 cctccggcgacta 314
>gb|AV920515.1|AV920515 AV920515 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f21 3', mRNA sequence
Length = 623
Score = 232 bits (117), Expect = 2e-059
Identities = 246/289 (85%)
Strand = Plus / Minus
Query: 741 tctgaaggctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgctt 800
|||||||||||||||| |||| |||| ||||| ||| ||||||||| | |||||||||||
Sbjct: 623 tctgaaggctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgctt 564
Query: 801 cagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcac 860
|| |||||||| ||||||||||||||||| || ||| |||||| || ||| || ||
Sbjct: 563 cacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatggaac 504
Query: 861 agatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactgat 920
|||||||||||||| || |||||||| || |||||||| ||||||||||| || |||||
Sbjct: 503 cgatgagaactccctcactagggtcataacgacccgcgccgaggtggacctgaagctgat 444
Query: 921 taaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggacac 980
|| ||||| ||||||||||||||||| || || ||||| ||||||||| || |||||
Sbjct: 443 caaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcgacac 384
Query: 981 ctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 383 ctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 335
>gb|BQ740108.1|BQ740108 HC105G07 HC Hordeum vulgare subsp. vulgare cDNA clone HC105G07
similar to annexin P35 - maize
gi|1370603|emb|CAA66901.1| (X98245) annexin p35 [Zea
mays], mRNA sequence
Length = 638
Score = 232 bits (117), Expect = 2e-059
Identities = 393/485 (81%)
Strand = Plus / Plus
Query: 346 gacgcggtgctggccaacgaggcggcgcggaagtggaagcccgggaaccgtgtgctcgtc 405
|||||||||||||||||||||| ||| ||||||||| || ||| ||| | |||||||
Sbjct: 6 gacgcggtgctggccaacgaggaggccaagaagtggaacccggggggccgcgcgctcgtc 65
Query: 406 gagatcgcctgcacgcgcacctccgcgcagatcttcgcgaccaggcaggcttatcacgag 465
|||||||||||| |||||||| ||||||| ||||||| ||| |||||| || |||||
Sbjct: 66 gagatcgcctgcgcgcgcacccccgcgcacctcttcgccgccaagcaggcctaccacgac 125
Query: 466 cggttcaagcgctcgcttgaggaagacatcgctgcgcacgtcactggggacttccgcaag 525
|| |||||||||||||| ||||| ||| |||| ||||||||||| || ||||||||||||
Sbjct: 126 cgcttcaagcgctcgctcgaggaggacgtcgccgcgcacgtcaccggcgacttccgcaag 185
Query: 526 ctattggtgccacttgtaagtacttaccgctatgatggaccagaggtcaacacaaggttg 585
|| |||||||| |||||||| | |||||||||||||| || ||||| || || ||||
Sbjct: 186 cttttggtgcctcttgtaagcgcgtaccgctatgatggcccggaggtgaatacgtcgttg 245
Query: 586 gcacactcagaagccaaactacttcatgagaagatccatcacaaggcttacagtgatgat 645
|| ||||| |||||||| |||| |||| ||||||| | ||||| ||||||||||||
Sbjct: 246 gcgcactctgaagccaagatactccatgcgaagatcagcgagaaggcctacagtgatgat 305
Query: 646 gagatcatcagaatcctcaccactaggagcaaacctcagctgattgctacattcaatcat 705
||| || |||| || ||||| || ||||||||| ||||||| |||| ||||||||
Sbjct: 306 gaggtcgtcaggattctcactacaaggagcaaagctcagctacttgcaacattcaacagc 365
Query: 706 tacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgacccccaggacgag 765
||||||||| || | |||| |||| |||||| || |||| || ||| ||||||||
Sbjct: 366 tacaatgatcagttcagtcaccctatcaccaaggacctcaaggaagatcccaaggacgag 425
Query: 766 tacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacaggtactttgag 825
| |||| || ||| |||||||||| |||| |||| |||||| ||||| |||||||||
Sbjct: 426 ttcctctcgaccctgagggcgatcataaggtgtttcacttgccccgacagatactttgag 485
Query: 826 aaggt 830
|||||
Sbjct: 486 aaggt 490
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 859 acagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactg 918
||||| ||| || |||| || ||||| || ||||| || || ||||||||||| || ||
Sbjct: 519 acagacgagcacacccttactagggtgataaccactcgtgccgaggtggacctgaaggtg 578
Query: 919 attaaggaggcgtaccagaagaggaacagcgtgccgctgga 959
|| ||||||||||||||||||||||||||||| || |||||
Sbjct: 579 ataaaggaggcgtaccagaagaggaacagcgtccccctgga 619
>gb|CA023687.1|CA023687 HZ47B06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47B06
5-PRIME, mRNA sequence
Length = 491
Score = 222 bits (112), Expect = 2e-056
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 240 cctacggcgaggagctgctccggagcatcaccgacgagatctcaggcgacttcgagaggg 299
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 300 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 359
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 360 ccaagaagtggcacccggggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 419
Query: 431 cgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgaggaag 490
||||| ||||||| ||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 420 cgcagctcttcgccgtcaggcaggcctaccatgaccgcttcaagcgctcgctcgaggagg 479
Query: 491 acatcgctgcgc 502
|| |||||||||
Sbjct: 480 acgtcgctgcgc 491
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144
||||| |||||||||||||| ||| || || || ||||||| ||||||||| | ||
Sbjct: 74 atggcgacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 133
Query: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggcca 203
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 134 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggcca 192
>gb|AV931358.1|AV931358 AV931358 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19i03 3', mRNA sequence
Length = 617
Score = 216 bits (109), Expect = 1e-054
Identities = 238/281 (84%)
Strand = Plus / Minus
Query: 749 ctgacccccaggacgagtacctcagaacgctgcgggcgatcatccggtgcttcagttgcc 808
|||||||| |||| |||| ||||| ||| ||||||||| | ||||||||||||| ||||
Sbjct: 617 ctgaccccaaggatgagttcctcaaaaccctgcgggcggttatccggtgcttcacctgcc 558
Query: 809 ctgacaggtactttgagaaggtggctaggcaggccatagcggggctaggcacagatgaga 868
|||| ||||||||||||||||| || ||| |||||| || ||| || || |||||||
Sbjct: 557 ctgataggtactttgagaaggttgccaggttggccattgcagggaatggaaccgatgaga 498
Query: 869 actccctgaccagggtcatcaccacccgcgctgaggtggacctcaaactgattaaggagg 928
||||||| || |||||||| || |||||||| ||||||||||| || ||||| || ||||
Sbjct: 497 actccctcactagggtcataacgacccgcgccgaggtggacctgaagctgatcaaagagg 438
Query: 929 cgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcgggggacacctccggcg 988
| ||||||||||||||||| || || ||||| ||||||||| || |||||||||||||
Sbjct: 437 cataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcgacacctccggcg 378
Query: 989 actacgagagcatgctcctcgcgctcctggggcaggagtga 1029
||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 377 actacgagaccatgctccttgccctcctggggaaggagtga 337
>gb|BU994783.1|BU994783 HM08D01r HM Hordeum vulgare subsp. vulgare cDNA clone HM08D01
5-PRIME, mRNA sequence
Length = 609
Score = 208 bits (105), Expect = 3e-052
Identities = 248/293 (84%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 738 ggatctgaaggctgacccccagg-acgagtacctcagaacgctgcgggcgatcatccggt 796
||||||||||||||||||| ||| | |||| ||||| ||| ||||||||| | |||||||
Sbjct: 1 ggatctgaaggctgaccccaagggatgagttcctcaaaaccctgcgggcggttatccggt 60
Query: 797 gcttcagttgccctgacaggtactttgagaaggtggctaggcaggccatagcggggctag 856
|||||| |||||||| ||||||||||||||||| || ||| |||||| || ||| |
Sbjct: 61 gcttcacctgccctgataggtactttgagaaggttgccaggttggccattgcagggaatg 120
Query: 857 gcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaac 916
| || |||||||||||||| || ||||| || || |||||||| ||||||||||| || |
Sbjct: 121 gaaccgatgagaactccctcactagggt-ataacgacccgcgccgaggtggacctgaagc 179
Query: 917 tgattaaggaggcgtaccagaagaggaacagcgtgccgctggagcgggccgtcgcggggg 976
|||| || ||||| ||||||||||||||||| || || ||||| ||||||||| || |
Sbjct: 180 tgatcaaagaggcataccagaagaggaacagtgtccccttggagaaggccgtcgcaggcg 239
Query: 977 acacctccggcgactacgagagcatgctcctcgcgctcctggggcaggagtga 1029
||||||||||||||||||||| ||||||||| || ||||||||| ||||||||
Sbjct: 240 acacctccggcgactacgagaccatgctccttgccctcctggggaaggagtga 292
>gb|BQ459986.1|BQ459986 HA07I14r HA Hordeum vulgare subsp. vulgare cDNA clone HA07I14
5-PRIME, mRNA sequence
Length = 481
Score = 204 bits (103), Expect = 5e-051
Identities = 207/241 (85%), Gaps = 2/241 (0%)
Strand = Plus / Plus
Query: 250 gcctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagagg 309
||||||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 239 gcctacggcgaggagctgctccgctccatcaccgacgagatccacggcaagttcgagagg 298
Query: 310 gccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcg 369
|| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 299 gcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggccaacgaggag 358
Query: 370 gcgcggaagtggaagcccggga--accgtgtgctcgtcgagatcgcctgcacgcgcacct 427
|| ||||||||| || ||| ||| | ||||||||||||||||||| ||||||||
Sbjct: 359 gccaagaagtggaacccggggnggcccgcgcgctcgtcgagatcgcctgcgcgcgcaccc 418
Query: 428 ccgcgcagatcttcgcgaccaggcaggcttatcacgagcggttcaagcgctcgcttgagg 487
||||||| ||||||| ||| |||||| || ||||| || |||||||||||||| ||||
Sbjct: 419 ccgcgcacctcttcgccgccaagcaggcctaccacgaccgcttcaagcgctcgctcgagg 478
Query: 488 a 488
|
Sbjct: 479 a 479
Score = 61.9 bits (31), Expect = 5e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 119 ccgtcgccgatgactgcgaccagctgcgcaaagcattccaagggtggggcacgaacgagg 178
|||| ||||| |||||||| ||||| ||||| || ||| ||||||||||| ||||||
Sbjct: 108 ccgtggccgaggactgcgagcagctccgcaaggcgttcgccgggtggggcaccaacgagc 167
Query: 179 cgctcatcatctccatcct 197
||||||||||||||||||
Sbjct: 168 ggctcatcatctccatcct 186
>gb|BI956336.1|BI956336 HVSMEn0002I15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002I15f, mRNA sequence
Length = 453
Score = 194 bits (98), Expect = 5e-048
Identities = 169/193 (87%)
Strand = Plus / Plus
Query: 251 cctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagaggg 310
|||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 240 cctacggcgaggagctgctccggagcatcaccgacgagatctcangcgacttcgagaggg 299
Query: 311 ccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcgg 370
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct: 300 ctgtgatcctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccg 359
Query: 371 cgcggaagtggaagcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccg 430
| ||||||| | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 360 ccaagaagtggcaccccgggaaccccgtgctcgtcgagatcgcctgctcgcgcggctccg 419
Query: 431 cgcagatcttcgc 443
||||| |||||||
Sbjct: 420 cgcagctcttcgc 432
Score = 99.6 bits (50), Expect = 2e-019
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 122 tcgccgatgactgcgaccagctgcgcaaagcattccaagggtggggcacgaacgaggcgc 181
||||||| ||||||||| | || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 111 tcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcacgaacgaagcgc 170
Query: 182 tcatcatctccatcctcggcca 203
|||||||||||||||| |||||
Sbjct: 171 tcatcatctccatcctgggcca 192
>gb|BQ468773.1|BQ468773 HM02E22r HM Hordeum vulgare subsp. vulgare cDNA clone HM02E22
5-PRIME, mRNA sequence
Length = 410
Score = 178 bits (90), Expect = 3e-043
Identities = 157/178 (88%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 250 gcctacggcgaggagctcctccgctccatcacggacgagatctccggcgacttcgagagg 309
||||||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 231 gcctacggcgaggagctgctccgctccatcaccgacgagatccacggcaagttcgagagg 290
Query: 310 gccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacgaggcg 369
|| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 291 gcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggccaacgaggag 350
Query: 370 gcgcggaagtggaagccc-gggaaccgtgtgctcgtcgagatcgcctgcacgcgcacc 426
|| ||||||||| ||| ||| ||| | ||||||||||||||||||| ||||||||
Sbjct: 351 gccaagaagtggaaccccggggggccgcgcgctcgtcgagatcgcctgcgcgcgcacc 408
Score = 61.9 bits (31), Expect = 5e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 119 ccgtcgccgatgactgcgaccagctgcgcaaagcattccaagggtggggcacgaacgagg 178
|||| ||||| |||||||| ||||| ||||| || ||| ||||||||||| ||||||
Sbjct: 100 ccgtggccgaggactgcgagcagctccgcaaggcgttcgccgggtggggcaccaacgagc 159
Query: 179 cgctcatcatctccatcct 197
||||||||||||||||||
Sbjct: 160 ggctcatcatctccatcct 178
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,744
Number of Sequences: 312970
Number of extensions: 131744
Number of successful extensions: 40328
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40074
Number of HSP's gapped (non-prelim): 177
length of query: 1277
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1258
effective length of database: 169,188,109
effective search space: 212838641122
effective search space used: 212838641122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)