BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.2
(660 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DA... 56 2e-006
gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA... 56 2e-006
gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA... 56 2e-006
gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm librar... 56 2e-006
gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm librar... 56 2e-006
gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm librar... 56 2e-006
gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm libra... 56 2e-006
gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. v... 48 4e-004
gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. v... 48 4e-004
gb|BU975545.1|BU975545 HB31H19r BC Hordeum vulgare subsp. v... 48 4e-004
gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. v... 48 4e-004
gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. v... 48 4e-004
gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. v... 48 4e-004
gb|AL507591.1|AL507591 AL507591 Hordeum vulgare Barke devel... 40 0.090
gb|AL510880.1|AL510880 AL510880 Hordeum vulgare Barke devel... 40 0.090
gb|BM099155.1|BM099155 EBes01_SQ002_G06_R embryo sac, 4-6 D... 40 0.090
gb|BM441299.2|BM441299 EBed02_SQ002_P15_R endosperm, 8 DPA,... 40 0.090
gb|BU969436.1|BU969436 HB11I11r BC Hordeum vulgare subsp. v... 40 0.090
gb|BU971990.1|BU971990 HB20E11r BC Hordeum vulgare subsp. v... 40 0.090
gb|BU979199.1|BU979199 HA15H01r HA Hordeum vulgare subsp. v... 40 0.090
gb|BU980041.1|BU980041 HA18F18r HA Hordeum vulgare subsp. v... 40 0.090
gb|BU981496.1|BU981496 HA23M22r HA Hordeum vulgare subsp. v... 40 0.090
gb|BU982940.1|BU982940 HA28A22r HA Hordeum vulgare subsp. v... 40 0.090
gb|BU983599.1|BU983599 HA30E06r HA Hordeum vulgare subsp. v... 40 0.090
>gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M06f, mRNA sequence
Length = 801
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 288 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 229
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 228 ggcagacgttggcgcagttg 209
>gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_K08 5', mRNA sequence
Length = 390
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 279 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 220
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 219 ggcagacgttggcgcagttg 200
>gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P21 5', mRNA sequence
Length = 410
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 288 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 229
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 228 ggcagacgttggcgcagttg 209
>gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26e6 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 279 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 220
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 219 ggcagacgttggcgcagttg 200
>gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29b5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 279 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 220
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 219 ggcagacgttggcgcagttg 200
>gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h3 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 279 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 220
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 219 ggcagacgttggcgcagttg 200
>gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL61f11 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 561
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 137 tggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtca 196
||||||||||||||||| |||| ||||| ||| |||||||| ||| || ||||||
Sbjct: 289 tggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtcc 230
Query: 197 ggcagacgtttgcgcagttg 216
|||||||||| |||||||||
Sbjct: 229 ggcagacgttggcgcagttg 210
>gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. vulgare cDNA clone HB03I09
5-PRIME, mRNA sequence
Length = 488
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 288 gcagaagcagcggcggcgaaggccgcggcagttgccgccggggaagccctcggtccggca 229
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 228 gacgttggcgcagttg 213
>gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04L07
5-PRIME, mRNA sequence
Length = 408
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 275 gcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtccggca 216
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 215 gacgttggcgcagttg 200
>gb|BU975545.1|BU975545 HB31H19r BC Hordeum vulgare subsp. vulgare cDNA clone HB31H19
5-PRIME, mRNA sequence
Length = 245
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 98 gcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtccggca 39
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 38 gacgttggcgcagttg 23
>gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. vulgare cDNA clone HB32I22
5-PRIME, mRNA sequence
Length = 448
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 291 gcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtccggca 232
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 231 gacgttggcgcagttg 216
>gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L17
5-PRIME, mRNA sequence
Length = 376
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 243 gcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtccggca 184
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 183 gacgttggcgcagttg 168
>gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06J05
5-PRIME, mRNA sequence
Length = 306
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 141 gcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggca 200
||||||||||||| |||| ||||| ||| |||||||| ||| || |||||| ||||
Sbjct: 173 gcagaagcagcggcggcggaggccgcggcagttgccgccggggaagccctcggtccggca 114
Query: 201 gacgtttgcgcagttg 216
|||||| |||||||||
Sbjct: 113 gacgttggcgcagttg 98
>gb|AL507591.1|AL507591 AL507591 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E14V 5',
mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 196 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 157
>gb|AL510880.1|AL510880 AL510880 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E14u 3',
mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 224 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 263
>gb|BM099155.1|BM099155 EBes01_SQ002_G06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_G06 5', mRNA sequence
Length = 359
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 232 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 193
>gb|BM441299.2|BM441299 EBed02_SQ002_P15_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ002_P15 5', mRNA sequence
Length = 187
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 44 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 5
>gb|BU969436.1|BU969436 HB11I11r BC Hordeum vulgare subsp. vulgare cDNA clone HB11I11
5-PRIME, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 252 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 213
>gb|BU971990.1|BU971990 HB20E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB20E11
5-PRIME, mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 245 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 206
>gb|BU979199.1|BU979199 HA15H01r HA Hordeum vulgare subsp. vulgare cDNA clone HA15H01
5-PRIME, mRNA sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 336 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 297
>gb|BU980041.1|BU980041 HA18F18r HA Hordeum vulgare subsp. vulgare cDNA clone HA18F18
5-PRIME, mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 241 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 202
>gb|BU981496.1|BU981496 HA23M22r HA Hordeum vulgare subsp. vulgare cDNA clone HA23M22
5-PRIME, mRNA sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 325 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 364
>gb|BU982940.1|BU982940 HA28A22r HA Hordeum vulgare subsp. vulgare cDNA clone HA28A22
5-PRIME, mRNA sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 235 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 196
>gb|BU983599.1|BU983599 HA30E06r HA Hordeum vulgare subsp. vulgare cDNA clone HA30E06
5-PRIME, mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.090
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 178 ccggtgaaaccttcggtcaggcagacgtttgcgcagttgg 217
||||||||||| ||||||||||| || |||| |||||||
Sbjct: 234 ccggtgaaaccctcggtcaggcaaacacttgcacagttgg 195
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,261
Number of Sequences: 312970
Number of extensions: 76261
Number of successful extensions: 23039
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 23015
Number of HSP's gapped (non-prelim): 30
length of query: 660
length of database: 175,134,539
effective HSP length: 19
effective length of query: 641
effective length of database: 169,188,109
effective search space: 108449577869
effective search space used: 108449577869
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)