BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV064016.1|CV064016 BNEL96d6 Barley EST endosperm librar... 196 7e-049
gb|BQ460467.1|BQ460467 HA09H21r HA Hordeum vulgare subsp. v... 180 4e-044
gb|BQ657142.1|BQ657142 HA09H21u HA Hordeum vulgare subsp. v... 180 4e-044
gb|BU983843.1|BU983843 HA31D12r HA Hordeum vulgare subsp. v... 172 1e-041
gb|CV057514.1|CV057514 BNEL28g10 Barley EST endosperm libra... 172 1e-041
gb|CV058244.1|CV058244 BNEL35h4 Barley EST endosperm librar... 172 1e-041
gb|CV058639.1|CV058639 BNEL3C10 Barley EST endosperm librar... 167 6e-040
gb|CV053723.1|CV053723 BNEL102e12 Barley EST endosperm libr... 161 4e-038
gb|CV058335.1|CV058335 BNEL37a1 Barley EST endosperm librar... 161 4e-038
gb|CV061337.1|CV061337 BNEL67f6 Barley EST endosperm librar... 161 4e-038
gb|CV062016.1|CV062016 BNEL75d5 Barley EST endosperm librar... 161 4e-038
gb|CV062510.1|CV062510 BNEL7H1 Barley EST endosperm library... 161 4e-038
gb|CV062698.1|CV062698 BNEL82a1 Barley EST endosperm librar... 161 4e-038
gb|CV063833.1|CV063833 BNEL93f8 Barley EST endosperm librar... 161 4e-038
gb|CV060601.1|CV060601 BNEL5A12 Barley EST endosperm librar... 153 1e-035
gb|BQ756160.1|BQ756160 EBem05_SQ001_P18_R embryo, 14 DPA, n... 149 2e-034
gb|CV059933.1|CV059933 BNEL52e5 Barley EST endosperm librar... 145 2e-033
gb|CV058935.1|CV058935 BNEL42f10 Barley EST endosperm libra... 139 1e-031
gb|CV054964.1|CV054964 BNEL115c6 Barley EST endosperm libra... 74 7e-012
gb|CV061470.1|CV061470 BNEL69c12 Barley EST endosperm libra... 74 7e-012
gb|BI949354.1|BI949354 HVSMEl0013I01f Hordeum vulgare spike... 62 3e-008
gb|CV055699.1|CV055699 BNEL122e2 Barley EST endosperm libra... 50 1e-004
gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subs... 46 0.002
gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. v... 46 0.002
>gb|CV064016.1|CV064016 BNEL96d6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL96d6 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 746
Score = 196 bits (99), Expect = 7e-049
Identities = 334/410 (81%), Gaps = 6/410 (1%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||| || |||||| | |||||||||||||| || ||||| | |||||||||||| |||
Sbjct: 705 agcacttgttcgtcgccnaagttgagcgcgcgccggatgccgtcgtcgcagctgtcnccg 646
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
||||||| | ||| || | || ||||| ||||| ||||| |||||||||||||||
Sbjct: 645 gagtagtccgggttccggtcgccgctgcatggctggcacccgttgaagtgcgtcacgacg 586
Query: 368 gggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcgttc 427
|| || | |||||| | || ||| ||||||| ||||| || || |||| || || | |
Sbjct: 585 ggccgcctccaccccttgacgccgctctccgcgagccccgcgcccgccagcgccgcctcc 526
Query: 428 cttgccaccgcgtactccgcgtgctccc---tctccgcgtgccgcctccgcagc-gcggc 483
|| || ||||||| || ||||||||| || |||||||||||||||||||| |||
Sbjct: 525 ctcgcatgcgcgtacccctcgtgctcccagctcgccgcgtgccgcctccgcagcagcgct 466
Query: 484 agctcc--cggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgcccc 541
|| || || ||||||||||||||||||||||| | ||| ||| | |||||||||||
Sbjct: 465 ggcgccggcgcccgccgctccatcgcctcgtaccgcgccgcgatgccgccgagccgcccc 406
Query: 542 acgatctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgc 601
|||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct: 405 acgatctccacccagtagccctggaagtagtagccgttctccaggaacaccttctcccgc 346
Query: 602 caccggctgccctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
||| |||||||| ||| ||||||||||||| ||||| |||||||||||
Sbjct: 345 cacgggctgcccctgtgctgcagcatgtacaccagcgccgactggtcgtc 296
>gb|BQ460467.1|BQ460467 HA09H21r HA Hordeum vulgare subsp. vulgare cDNA clone HA09H21
5-PRIME, mRNA sequence
Length = 388
Score = 180 bits (91), Expect = 4e-044
Identities = 166/191 (86%)
Strand = Plus / Minus
Query: 179 gggtaatcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccg 238
||||||||||||||||| ||| |||||||||| ||||||| | |||||||| ||| |||
Sbjct: 297 gggtaatcgaacggcagcggccgcacgtcgtcgctgagcgggccggcgtgccggaacccg 238
Query: 239 tacgccctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcag 298
|| |||| |||||||||||||||||||||||||||||||| || ||||| | |||||||
Sbjct: 237 tagtccctgagcacctggtcgtcggcgaagttgagcgcgcgccggatgccgtcgtcgcag 178
Query: 299 ctgtccccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgc 358
|||||||||||||||| | ||| || | || ||||| ||||| |||||||||||||||
Sbjct: 177 ctgtccccggagtagtcccggttccggtcgccgctgcatggctggcaccccgtgaagtgc 118
Query: 359 gtcacgaacgg 369
|||||||||||
Sbjct: 117 gtcacgaacgg 107
>gb|BQ657142.1|BQ657142 HA09H21u HA Hordeum vulgare subsp. vulgare cDNA clone HA09H21
3-PRIME, mRNA sequence
Length = 401
Score = 180 bits (91), Expect = 4e-044
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 179 gggtaatcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccg 238
||||||||||||||||| ||| |||||||||| ||||||| | |||||||| ||| |||
Sbjct: 191 gggtaatcgaacggcagcggccgcacgtcgtcgctgagcgggccggcgtgccggaacccg 250
Query: 239 tacgccctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcag 298
|| |||| |||||||||||||||||||||||||||||||| || ||||| | |||||||
Sbjct: 251 tagtccctgagcacctggtcgtcggcgaagttgagcgcgcgccggatgccgtcgtcgcag 310
Query: 299 ctgtccccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgc 358
|||||||||||||||| | ||| || | || ||||| ||||| |||||||||||||||
Sbjct: 311 ctgtccccggagtagtcccggttccggtcgccgctgcatggctggcaccccgtgaagtgc 370
Query: 359 gtcacgaacgg 369
|||||||||||
Sbjct: 371 gtcacgaacgg 381
>gb|BU983843.1|BU983843 HA31D12r HA Hordeum vulgare subsp. vulgare cDNA clone HA31D12
5-PRIME, mRNA sequence
Length = 354
Score = 172 bits (87), Expect = 1e-041
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 179 gggtaatcgaacggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccg 238
|||||||||||||||| ||| |||||||||| ||||||| | |||||||| ||| |||
Sbjct: 295 gggtaatcgaacggcaacggccgcacgtcgtcgctgagcgggccggcgtgccggaacccg 236
Query: 239 tacgccctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcag 298
|| |||| |||||||||||||||||||||||||||||||| || ||||| | |||||||
Sbjct: 235 tagtccctgagcacctggtcgtcggcgaagttgagcgcgcgccggatgccgtcgtcgcag 176
Query: 299 ctgtccccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgc 358
|||||||||||||||| | ||| || | || ||||| ||||| |||||||||||||||
Sbjct: 175 ctgtccccggagtagtcccggttccggtcgccgctgcatggctggcaccccgtgaagtgc 116
Query: 359 gtcacgaacgg 369
|||||||||||
Sbjct: 115 gtcacgaacgg 105
>gb|CV057514.1|CV057514 BNEL28g10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL28g10 5' similar to putative
alpha galactosyltransferase, mRNA sequence
Length = 602
Score = 172 bits (87), Expect = 1e-041
Identities = 141/159 (88%)
Strand = Plus / Minus
Query: 493 ccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctccat 552
||||||||||||||||||||||| | ||| ||| | |||||||||||||||||||||
Sbjct: 454 ccgccgctccatcgcctcgtaccgcgccgcgatgccgccgagccgccccacgatctccac 395
Query: 553 ccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccaccggctgcc 612
||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 394 ccagtagccctggaagtagtagccgttctccaggaacaccttctcccgccacgggctgcc 335
Query: 613 ctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
| ||| ||||||||||||| ||||| |||||||||||
Sbjct: 334 cctgtgctgcagcatgtacaccagcgccgactggtcgtc 296
>gb|CV058244.1|CV058244 BNEL35h4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL35h4 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 559
Score = 172 bits (87), Expect = 1e-041
Identities = 141/159 (88%)
Strand = Plus / Minus
Query: 493 ccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctccat 552
||||||||||||||||||||||| | ||| ||| | |||||||||||||||||||||
Sbjct: 454 ccgccgctccatcgcctcgtaccgcgccgcgatgccgccgagccgccccacgatctccac 395
Query: 553 ccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccaccggctgcc 612
||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 394 ccagtagccctggaagtagtagccgttctccaggaacaccttctcccgccacgggctgcc 335
Query: 613 ctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
| ||| ||||||||||||| ||||| |||||||||||
Sbjct: 334 cctgtgctgcagcatgtacaccagcgccgactggtcgtc 296
>gb|CV058639.1|CV058639 BNEL3C10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL3C10 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 625
Score = 167 bits (84), Expect = 6e-040
Identities = 140/159 (88%)
Strand = Plus / Minus
Query: 493 ccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctccat 552
|||||| |||||||||||||||| | ||| ||| | |||||||||||||||||||||
Sbjct: 601 ccgccgntccatcgcctcgtaccgcgccgcgatgccgccgagccgccccacgatctccac 542
Query: 553 ccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccaccggctgcc 612
||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 541 ccagtagccctggaagtagtagccgttctccaggaacaccttctcccgccacgggctgcc 482
Query: 613 ctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
| ||| ||||||||||||| ||||| |||||||||||
Sbjct: 481 cctgtgctgcagcatgtacaccagcgccgactggtcgtc 443
>gb|CV053723.1|CV053723 BNEL102e12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL102e12 5' similar to putative
alpha galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV058335.1|CV058335 BNEL37a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL37a1 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 553
Score = 161 bits (81), Expect = 4e-038
Identities = 135/153 (88%)
Strand = Plus / Minus
Query: 499 ctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctccatccagta 558
||||||||||||||||| | ||| ||| | ||||||||||||||||||||| ||||||
Sbjct: 552 ctccatcgcctcgtaccgcgccgcgatgccgccgagccgccccacgatctccacccagta 493
Query: 559 gccctcgaagtagtagccgctctccaggaacaccttgtcccgccaccggctgccctcctg 618
||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||
Sbjct: 492 gccctggaagtagtagccgttctccaggaacaccttctcccgccacgggctgcccctgtg 433
Query: 619 cagcagcatgtacacgagcgcggactggtcgtc 651
| ||||||||||||| ||||| |||||||||||
Sbjct: 432 ctgcagcatgtacaccagcgccgactggtcgtc 400
>gb|CV061337.1|CV061337 BNEL67f6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67f6 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV062016.1|CV062016 BNEL75d5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL75d5 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV062510.1|CV062510 BNEL7H1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL7H1 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV062698.1|CV062698 BNEL82a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL82a1 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV063833.1|CV063833 BNEL93f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93f8 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 298
Score = 161 bits (81), Expect = 4e-038
Identities = 230/279 (82%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 298 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 239
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 238 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 179
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgggcggcgccacccg 382
|| | || ||||| ||||| |||||||||||||||||||||||||| || | ||||||
Sbjct: 178 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacggccgcctccacccc 119
Query: 383 tgcaccccggtctccgccagcccggccccgcccagggcggcgttccttgccaccgcgtac 442
| || ||| ||||||| ||||| || || |||| || || | ||| ||| |||||||
Sbjct: 118 ttgacgccgctctccgcgagccccgcgcccgccagcgccgcctccctcgcctgcgcgtac 59
Query: 443 tccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
|| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 ccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV060601.1|CV060601 BNEL5A12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL5A12 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 628
Score = 153 bits (77), Expect = 1e-035
Identities = 110/121 (90%)
Strand = Plus / Minus
Query: 531 cgagccgccccacgatctccatccagtagccctcgaagtagtagccgctctccaggaaca 590
||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 563 cgagccgccccacgatctccacccagtagccctggaagtagtagccgttctccaggaaca 504
Query: 591 ccttgtcccgccaccggctgccctcctgcagcagcatgtacacgagcgcggactggtcgt 650
|||| ||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||
Sbjct: 503 ccttctcccgccacgggctgcccctgtgctgcagcatgtacaccagcgccgactggtcgt 444
Query: 651 c 651
|
Sbjct: 443 c 443
>gb|BQ756160.1|BQ756160 EBem05_SQ001_P18_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_P18 5', mRNA sequence
Length = 246
Score = 149 bits (75), Expect = 2e-034
Identities = 144/167 (86%)
Strand = Plus / Minus
Query: 203 acgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagcacctggtcgtcg 262
|||||||| ||||||| | |||||||| ||| ||||| |||| |||||||||||||||
Sbjct: 246 acgtcgtcgctgagcgggccggcgtgccggaacccgtagtccctgagcacctggtcgtcg 187
Query: 263 gcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggagtagtgctcgttg 322
||||||||||||||||| || ||||| | ||||||||||||||||||||||| | |||
Sbjct: 186 gcgaagttgagcgcgcgccggatgccgtcgtcgcagctgtccccggagtagtcccggttc 127
Query: 323 cgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacgg 369
|| | || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 126 cggtcgccgctgcatggctggcaccccgtgaagtgcgtcacgaacgg 80
>gb|CV059933.1|CV059933 BNEL52e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL52e5 5' similar to putative alpha
galactosyltransferase, mRNA sequence
Length = 634
Score = 145 bits (73), Expect = 2e-033
Identities = 109/121 (90%)
Strand = Plus / Minus
Query: 531 cgagccgccccacgatctccatccagtagccctcgaagtagtagccgctctccaggaaca 590
||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 563 cgagccgccccccgatctccacccagtagccctggaagtagtagccgttctccaggaaca 504
Query: 591 ccttgtcccgccaccggctgccctcctgcagcagcatgtacacgagcgcggactggtcgt 650
|||| ||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||
Sbjct: 503 ccttctcccgccacgggctgcccctgtgctgcagcatgtacaccagcgccgactggtcgt 444
Query: 651 c 651
|
Sbjct: 443 c 443
>gb|CV058935.1|CV058935 BNEL42f10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42f10 5' similar to putative
alpha galactosyltransferase, mRNA sequence
Length = 303
Score = 139 bits (70), Expect = 1e-031
Identities = 197/239 (82%), Gaps = 3/239 (1%)
Strand = Plus / Minus
Query: 243 ccctcagcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgt 302
|||| |||||||||||||||||||||||||||||||| || ||||| | |||||||||||
Sbjct: 258 ccctgagcacctggtcgtcggcgaagttgagcgcgcgccggatgccgtcgtcgcagctgt 199
Query: 303 ccccggagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtca 362
|||||||||||| | ||| || | || ||||| ||||| ||| |||||||||||||||
Sbjct: 198 ccccggagtagtcccggttccggtcgccgctgcatggctggcacnccgtgaagtgcgtca 139
Query: 363 cgaacgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcgg 422
||||||| || | |||||| | || ||| ||||||| ||||| || || |||| || |
Sbjct: 138 cgaacggccgcctccaccccttgacgccgctctccgcgagccccgcgcccgccagcgccg 79
Query: 423 cgttccttgccaccgcgtactccgcgtgctcc---ctctccgcgtgccgcctccgcagc 478
| | ||| ||| ||||||| || |||||||| ||| ||||||||||||||||||||
Sbjct: 78 cctccctcgcctgcgcgtacccctcgtgctcccagctcgccgcgtgccgcctccgcagc 20
>gb|CV054964.1|CV054964 BNEL115c6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL115c6 5' similar to Oryza sativa,
mRNA sequence
Length = 593
Score = 73.8 bits (37), Expect = 7e-012
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgcc 288
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 184 agcacctggtcgtcggcgaggttgagcgcgcggcgcatgcc 224
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 gtgaagtgcgtcacgaacgggcggcgcca 378
|||||||||||||||||||| ||||||||
Sbjct: 286 gtgaagtgcgtcacgaacggccggcgcca 314
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 426 tccttgccaccgcgtactccgcgtgctccctctccgcgtgcc 467
|||| ||| |||||||| ||||||||||| |||||||||||
Sbjct: 380 tcctcgccgccgcgtacagcgcgtgctccccctccgcgtgcc 421
Score = 38.2 bits (19), Expect = 0.39
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 540 ccacgatctccatccagtagccctcgaagtagtag 574
||||||||||| |||||| |||| ||||||||||
Sbjct: 491 ccacgatctccgcccagtatccctggaagtagtag 525
>gb|CV061470.1|CV061470 BNEL69c12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL69c12 5' similar to Oryza sativa,
mRNA sequence
Length = 589
Score = 73.8 bits (37), Expect = 7e-012
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgcc 288
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 166 agcacctggtcgtcggcgaggttgagcgcgcggcgcatgcc 206
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 350 gtgaagtgcgtcacgaacgggcggcgcca 378
|||||||||||||||||||| ||||||||
Sbjct: 268 gtgaagtgcgtcacgaacggccggcgcca 296
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 426 tccttgccaccgcgtactccgcgtgctccctctccgcgtgcc 467
|||| ||| |||||||| ||||||||||| |||||||||||
Sbjct: 362 tcctcgccgccgcgtacagcgcgtgctccccctccgcgtgcc 403
Score = 38.2 bits (19), Expect = 0.39
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 540 ccacgatctccatccagtagccctcgaagtagtag 574
||||||||||| |||||| |||| ||||||||||
Sbjct: 473 ccacgatctccgcccagtatccctggaagtagtag 507
>gb|BI949354.1|BI949354 HVSMEl0013I01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013I01f, mRNA sequence
Length = 950
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccg 307
||||||||||||||||||| |||||||||||| ||||| || | | ||||| | || |
Sbjct: 499 agcacctggtcgtcggcgaggttgagcgcgcgccgcatcccgtcggcgcaggtctcgttg 440
Query: 308 gagtagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaac 367
|||||| ||||||| ||| || | ||| || | || || ||||||||||||||||||
Sbjct: 439 gagtagatctcgttgggcttgccgccgcaggggttgcatccggtgaagtgcgtcacgaac 380
Query: 368 gggcggcgcca 378
|| ||||||||
Sbjct: 379 ggccggcgcca 369
Score = 42.1 bits (21), Expect = 0.025
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 426 tccttgccaccgcgtactccgcgtgctccctctccgcgtgc 466
|||| ||| |||||||| ||||||||||| ||||||||||
Sbjct: 303 tcctcgccgccgcgtacagcgcgtgctccccctccgcgtgc 263
Score = 38.2 bits (19), Expect = 0.39
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 540 ccacgatctccatccagtagccctcgaagtagtag 574
||||||||||| |||||| |||| ||||||||||
Sbjct: 192 ccacgatctccgcccagtatccctggaagtagtag 158
>gb|CV055699.1|CV055699 BNEL122e2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL122e2 5' similar to alpha
galactosyltransferase, mRNA sequence
Length = 808
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttgagcgcgcggcgcatgc 287
||||||||||||||| | | ||||||||| ||||||||||
Sbjct: 544 agcacctggtcgtcgccaaggttgagcgcncggcgcatgc 505
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 350 gtgaagtgcgtcacgaacgggcggcgcca 378
|||||||||||||||||||| ||||||||
Sbjct: 442 gtgaagtgcgtcacgaacggccggcgcca 414
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 426 tccttgccaccgcgtactccgcgtgctccctctccgcgtgcc 467
|||| ||| |||||||| ||||||||||| |||||||||||
Sbjct: 348 tcctcgccgccgcgtacagcgcgtgctccccctccgcgtgcc 307
Score = 38.2 bits (19), Expect = 0.39
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 540 ccacgatctccatccagtagccctcgaagtagtag 574
||||||||||| |||||| |||| ||||||||||
Sbjct: 237 ccacgatctccgcccagtatccctggaagtagtag 203
>gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052A08F1, mRNA sequence
Length = 360
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 226 gtgcctgaaaccgtacgccctcagcacctggtcgtcggcgaagttga 272
|||||| || |||||| ||| |||||||||| ||||||||||||||
Sbjct: 202 gtgcctaaacccgtacagcctgagcacctggttgtcggcgaagttga 156
>gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M07
3-PRIME, mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 226 gtgcctgaaaccgtacgccctcagcacctggtcgtcggcgaagttga 272
|||||| || |||||| ||| |||||||||| ||||||||||||||
Sbjct: 345 gtgcctaaacccgtacagcctgagcacctggttgtcggcgaagttga 391
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,538
Number of Sequences: 312970
Number of extensions: 85538
Number of successful extensions: 22464
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22392
Number of HSP's gapped (non-prelim): 48
length of query: 733
length of database: 175,134,539
effective HSP length: 19
effective length of query: 714
effective length of database: 169,188,109
effective search space: 120800309826
effective search space used: 120800309826
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)