BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedl... 48 3e-004
gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, dro... 48 3e-004
gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. v... 48 3e-004
gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanas... 48 3e-004
gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke devel... 46 0.001
gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedl... 46 0.001
gb|BF258044.2|BF258044 HVSMEf0014J13f Hordeum vulgare seedl... 46 0.001
gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedl... 46 0.001
gb|BQ764120.1|BQ764120 EBro03_SQ006_G12_R root, 3 week, wat... 46 0.001
gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. v... 46 0.001
gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. v... 46 0.001
gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. v... 46 0.001
gb|CA023386.1|CA023386 HZ46B06r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. v... 46 0.001
gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. v... 46 0.001
gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. v... 46 0.001
gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. v... 46 0.001
gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. v... 46 0.001
gb|CK125687.1|CK125687 BES1824110a22 BES1824 Hordeum vulgar... 46 0.001
gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-... 46 0.001
gb|BI955999.1|BI955999 HVSMEm0025F08f Hordeum vulgare green... 44 0.005
gb|BG418448.2|BG418448 HVSMEk0022L18f Hordeum vulgare testa... 44 0.005
gb|BM816965.1|BM816965 HB107C06_SK.ab1 HB Hordeum vulgare s... 40 0.078
gb|BQ459996.1|BQ459996 HA07H24r HA Hordeum vulgare subsp. v... 40 0.078
gb|BQ460761.1|BQ460761 HA06A09r HA Hordeum vulgare subsp. v... 40 0.078
gb|BQ657664.1|BQ657664 HA07H24u HA Hordeum vulgare subsp. v... 40 0.078
gb|BI779653.2|BI779653 EBro01_SQ004_L01_R root, 3 week, hyd... 40 0.078
gb|BQ762880.1|BQ762880 EBro02_SQ006_L08_R root, 3 week, hyd... 40 0.078
gb|BU976872.1|BU976872 HA10H10r HA Hordeum vulgare subsp. v... 40 0.078
gb|BU976873.1|BU976873 HA10H10u HA Hordeum vulgare subsp. v... 40 0.078
gb|CA030876.1|CA030876 HX08G06r HX Hordeum vulgare subsp. v... 40 0.078
gb|CB875467.1|CB875467 HX08G06w HX Hordeum vulgare subsp. v... 40 0.078
gb|BF258887.2|BF258887 HVSMEf0016P05f Hordeum vulgare seedl... 38 0.31
gb|AV927257.1|AV927257 AV927257 K. Sato unpublished cDNA li... 38 0.31
gb|AV927647.1|AV927647 AV927647 K. Sato unpublished cDNA li... 38 0.31
gb|BM097191.2|BM097191 EBpi07_SQ002_L04_R pistil, 12 DPA, n... 38 0.31
gb|CV055255.1|CV055255 BNEL118e7 Barley EST endosperm libra... 38 0.31
gb|CV055610.1|CV055610 BNEL121e6 Barley EST endosperm libra... 38 0.31
emb|AJ276013.1|HVU276013 Hordeum vulgare partial mRNA for a... 38 0.31
>gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007M17f, mRNA sequence
Length = 442
Score = 48.1 bits (24), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggaga 158
|||||||||||||| ||| ||||| ||||||| ||||||||||
Sbjct: 140 cctgttcgacgccatggtggacgccgtggtggcggcgctggaga 183
>gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_M21 5', mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| ||| ||||||||||
Sbjct: 54 ggacggcgggctggtgtacaccaacatgttcgacgc 89
>gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. vulgare cDNA clone HV05D22
5-PRIME, mRNA sequence
Length = 492
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| ||| ||||||||||
Sbjct: 248 ggacggcgggctggtgtacaccaacatgttcgacgc 283
>gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanase (Hv34) gene, partial cds
Length = 2899
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| ||| ||||||||||
Sbjct: 2337 ggacggcgggctggtgtacaccaacatgttcgacgc 2372
>gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05G08u 3',
mRNA sequence
Length = 658
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gtgtacacgaacctgttcgacgccacggtagacgc 138
|||||||||||||| |||||||||| ||| |||||
Sbjct: 471 gtgtacacgaacctcttcgacgccatggtcgacgc 437
>gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J07f, mRNA sequence
Length = 570
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 199 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 241
>gb|BF258044.2|BF258044 HVSMEf0014J13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J13f, mRNA sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 202 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 244
>gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021L05f, mRNA sequence
Length = 854
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 16 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 58
>gb|BQ764120.1|BQ764120 EBro03_SQ006_G12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_G12 5', mRNA sequence
Length = 309
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 245 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 287
>gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. vulgare cDNA clone HA20M14
5-PRIME, mRNA sequence
Length = 502
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 gtgtacacgaacctgttcgacgccacggtagacgc 138
|||||||||||||| |||||||||| ||| |||||
Sbjct: 243 gtgtacacgaacctcttcgacgccatggtcgacgc 277
>gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22P03
5-PRIME, mRNA sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 gtgtacacgaacctgttcgacgccacggtagacgc 138
|||||||||||||| |||||||||| ||| |||||
Sbjct: 210 gtgtacacgaacctcttcgacgccatggtcgacgc 244
>gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23B03
5-PRIME, mRNA sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 gtgtacacgaacctgttcgacgccacggtagacgc 138
|||||||||||||| |||||||||| ||| |||||
Sbjct: 210 gtgtacacgaacctcttcgacgccatggtcgacgc 244
>gb|CA023386.1|CA023386 HZ46B06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46B06
5-PRIME, mRNA sequence
Length = 531
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 457 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 499
>gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. vulgare cDNA clone HP02G13
5-PRIME, mRNA sequence
Length = 606
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 97 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 139
>gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. vulgare cDNA clone HP04H07
5-PRIME, mRNA sequence
Length = 549
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 137 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 179
>gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. vulgare cDNA clone HP08L24
5-PRIME, mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 31 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 73
>gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G13
3-PRIME, mRNA sequence
Length = 682
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 572 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 530
>gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. vulgare cDNA clone HP02I04
3-PRIME, mRNA sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 499 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 457
>gb|CK125687.1|CK125687 BES1824110a22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A2210 5-PRIME, mRNA sequence
Length = 484
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 gtgtacacgaacctgttcgacgccacggtagacgc 138
|||||||||||||| |||||||||| ||| |||||
Sbjct: 176 gtgtacacgaacctcttcgacgccatggtcgacgc 210
>gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme I)
mRNA, 3' end
Length = 1025
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct: 609 cctgttcgacgccatggtggacgccgtggtggcggcgctggag 651
>gb|BI955999.1|BI955999 HVSMEm0025F08f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025F08f, mRNA sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgcca 128
||||||||||||||||||||||
Sbjct: 248 tacacgaacctgttcgacgcca 269
>gb|BG418448.2|BG418448 HVSMEk0022L18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022L18f, mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 269 gagaggccggcgcgcggcgtcg 290
||||||||||||||||||||||
Sbjct: 31 gagaggccggcgcgcggcgtcg 10
>gb|BM816965.1|BM816965 HB107C06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB107C06_SK.ab1 similar to (AF376054) putative Rop
family GTPase ROP8 [Zea mays], mRNA sequence
Length = 901
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 ggagaggccggcgcgcggcg 287
||||||||||||||||||||
Sbjct: 135 ggagaggccggcgcgcggcg 154
>gb|BQ459996.1|BQ459996 HA07H24r HA Hordeum vulgare subsp. vulgare cDNA clone HA07H24
5-PRIME, mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 272 tgttcgcggtgaacgagaccgggt 295
>gb|BQ460761.1|BQ460761 HA06A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA06A09
5-PRIME, mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 ggagaggccggcgcgcggcg 287
||||||||||||||||||||
Sbjct: 132 ggagaggccggcgcgcggcg 151
>gb|BQ657664.1|BQ657664 HA07H24u HA Hordeum vulgare subsp. vulgare cDNA clone HA07H24
3-PRIME, mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 441 tgttcgcggtgaacgagaccgggt 418
>gb|BI779653.2|BI779653 EBro01_SQ004_L01_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_L01 5', mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 ggagaggccggcgcgcggcg 287
||||||||||||||||||||
Sbjct: 125 ggagaggccggcgcgcggcg 144
>gb|BQ762880.1|BQ762880 EBro02_SQ006_L08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_L08 5', mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.078
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 ggagaggccggcgcgcggcg 287
||||||||||||||||||||
Sbjct: 127 ggagaggccggcgcgcggcg 146
>gb|BU976872.1|BU976872 HA10H10r HA Hordeum vulgare subsp. vulgare cDNA clone HA10H10
5-PRIME, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 272 tgttcgcggtgaacgagaccgggt 295
>gb|BU976873.1|BU976873 HA10H10u HA Hordeum vulgare subsp. vulgare cDNA clone HA10H10
3-PRIME, mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 441 tgttcgcggtgaacgagaccgggt 418
>gb|CA030876.1|CA030876 HX08G06r HX Hordeum vulgare subsp. vulgare cDNA clone HX08G06
5-PRIME, mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 308 tgttcgcggtgaacgagaccgggt 331
>gb|CB875467.1|CB875467 HX08G06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08G06
3-PRIME, mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.078
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 180 tgttcgcggtgaccgagaccgggt 203
|||||||||||| |||||||||||
Sbjct: 468 tgttcgcggtgaacgagaccgggt 445
>gb|BF258887.2|BF258887 HVSMEf0016P05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016P05f, mRNA sequence
Length = 905
Score = 38.2 bits (19), Expect = 0.31
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 92 gacggcgcgctggtgtacacgaacctgttcgacgc 126
||||||| ||||||||||| ||| ||||||||||
Sbjct: 333 gacggcggtctggtgtacaccaacatgttcgacgc 367
>gb|AV927257.1|AV927257 AV927257 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1d10 3', mRNA sequence
Length = 698
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 144 tggccgcgctggagaagga 162
|||||||||||||||||||
Sbjct: 265 tggccgcgctggagaagga 247
>gb|AV927647.1|AV927647 AV927647 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3a06 3', mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 144 tggccgcgctggagaagga 162
|||||||||||||||||||
Sbjct: 280 tggccgcgctggagaagga 262
>gb|BM097191.2|BM097191 EBpi07_SQ002_L04_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_L04 5', mRNA sequence
Length = 510
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 142 ggtggccgcgctggagaaggagg 164
|||||||||||||| ||||||||
Sbjct: 72 ggtggccgcgctggggaaggagg 50
>gb|CV055255.1|CV055255 BNEL118e7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL118e7 5' similar to
OSJNBa0060D06.11, mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 142 ggtggccgcgctggagaaggagg 164
|||||||||||||| ||||||||
Sbjct: 92 ggtggccgcgctggggaaggagg 70
>gb|CV055610.1|CV055610 BNEL121e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL121e6 5' similar to
OSJNBa0060D06.11, mRNA sequence
Length = 840
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 142 ggtggccgcgctggagaaggagg 164
|||||||||||||| ||||||||
Sbjct: 92 ggtggccgcgctggggaaggagg 70
>emb|AJ276013.1|HVU276013 Hordeum vulgare partial mRNA for alpha-tubulin 5 (atub5 gene)
Length = 794
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 144 tggccgcgctggagaagga 162
|||||||||||||||||||
Sbjct: 505 tggccgcgctggagaagga 523
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,064
Number of Sequences: 312970
Number of extensions: 77064
Number of successful extensions: 23867
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23818
Number of HSP's gapped (non-prelim): 49
length of query: 577
length of database: 175,134,539
effective HSP length: 19
effective length of query: 558
effective length of database: 169,188,109
effective search space: 94406964822
effective search space used: 94406964822
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)