BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493695.2.1
(570 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469847.1|BJ469847 BJ469847 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ476932.1|BJ476932 BJ476932 K. Sato unpublished cDNA li... 52 2e-005
gb|CD662217.1|CD662217 UCRHV18_01ag01_b1 Drought-stressed D... 52 2e-005
gb|BE454300.3|BE454300 HVSMEh0093J13f Hordeum vulgare 5-45 ... 48 3e-004
gb|BQ459828.1|BQ459828 HA07P11r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BQ460313.1|BQ460313 HA06J23r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BQ460558.1|BQ460558 HA09C17r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BQ657235.1|BQ657235 HA09C17u HA Hordeum vulgare subsp. v... 48 3e-004
gb|BQ657540.1|BQ657540 HA07P11u HA Hordeum vulgare subsp. v... 48 3e-004
gb|BU968921.1|BU968921 HB08P21r BC Hordeum vulgare subsp. v... 48 3e-004
gb|BU970036.1|BU970036 HB13G12r BC Hordeum vulgare subsp. v... 48 3e-004
gb|BU982143.1|BU982143 HA25K09r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BU983690.1|BU983690 HA30K16r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BI780902.2|BI780902 EBma05_SQ001_G18_R maternal, 12 DPA,... 46 0.001
gb|BI959091.1|BI959091 HVSMEn0018C03f Hordeum vulgare rachi... 44 0.005
gb|BG416232.1|BG416232 HVSMEk0010J15f Hordeum vulgare testa... 42 0.019
gb|BG416251.1|BG416251 HVSMEk0010L21f Hordeum vulgare testa... 42 0.019
gb|BM368789.2|BM368789 EBem08_SQ004_J18_R embryo, 40 DPA, n... 42 0.019
gb|BM100544.2|BM100544 EBma01_SQ005_I12_R maternal, 4 DPA, ... 42 0.019
gb|BI778718.2|BI778718 EBro01_SQ001_D08_R root, 3 week, hyd... 42 0.019
gb|BQ754111.1|BQ754111 EBca01_SQ002_N23_R carpel, pre-anthe... 42 0.019
gb|CA003997.1|CA003997 HS16D20r HS Hordeum vulgare subsp. v... 42 0.019
gb|CK123910.1|CK123910 BES1824106b24 BES1824 Hordeum vulgar... 42 0.019
gb|CK125483.1|CK125483 BES1824108k15 BES1824 Hordeum vulgar... 42 0.019
gb|AL504598.1|AL504598 AL504598 Hordeum vulgare Barke roots... 40 0.077
gb|AL506066.1|AL506066 AL506066 Hordeum vulgare Barke devel... 40 0.077
gb|AL508160.1|AL508160 AL508160 Hordeum vulgare Barke devel... 40 0.077
gb|AL509257.1|AL509257 AL509257 Hordeum vulgare Barke devel... 40 0.077
gb|BG299541.1|BG299541 HVSMEa0020K17f Hordeum vulgare seedl... 40 0.077
gb|BE559291.1|BE559291 HV_CEb0023H08f Hordeum vulgare seedl... 40 0.077
gb|BF619244.3|BF619244 HVSMEc0015J05f Hordeum vulgare seedl... 40 0.077
gb|BE558997.3|BE558997 HV_CEb0022C22f Hordeum vulgare seedl... 40 0.077
gb|AV914322.1|AV914322 AV914322 K. Sato unpublished cDNA li... 40 0.077
gb|BQ467248.1|BQ467248 HS03C10r HS Hordeum vulgare subsp. v... 40 0.077
gb|BQ753596.1|BQ753596 EBan01_SQ004_L08_R anther, yellow st... 40 0.077
gb|BQ764291.1|BQ764291 EBan01_SQ005_M12_R anther, yellow st... 40 0.077
gb|BQ764296.1|BQ764296 EBan01_SQ005_N11 _R anther, yellow s... 40 0.077
gb|CA019709.1|CA019709 HV12N18r HV Hordeum vulgare subsp. v... 40 0.077
gb|BE411850.1|BE411850 ISC009.H09F990902 ITEC ISC Barley Le... 38 0.30
gb|AL504639.1|AL504639 AL504639 Hordeum vulgare Barke roots... 38 0.30
gb|AL505148.1|AL505148 AL505148 Hordeum vulgare Barke roots... 38 0.30
gb|AV836475.1|AV836475 AV836475 K. Sato unpublished cDNA li... 38 0.30
gb|BE213950.1|BE213950 HV_CEb0001L18f Hordeum vulgare seedl... 38 0.30
gb|BF262346.2|BF262346 HV_CEa0003L15f Hordeum vulgare seedl... 38 0.30
gb|BG418524.1|BG418524 HVSMEk0022P13f Hordeum vulgare testa... 38 0.30
gb|BI959066.1|BI959066 HVSMEn0018A03f Hordeum vulgare rachi... 38 0.30
gb|BI959612.1|BI959612 HVSMEn0020G17f Hordeum vulgare rachi... 38 0.30
gb|BF254274.3|BF254274 HVSMEf0003I07f Hordeum vulgare seedl... 38 0.30
gb|AV933682.1|AV933682 AV933682 K. Sato unpublished cDNA li... 38 0.30
gb|AV934284.1|AV934284 AV934284 K. Sato unpublished cDNA li... 38 0.30
gb|AJ461675.1|AJ461675 AJ461675 S00002 Hordeum vulgare subs... 38 0.30
gb|BJ462432.1|BJ462432 BJ462432 K. Sato unpublished cDNA li... 38 0.30
gb|BQ472101.1|BQ472101 HV04G17r HV Hordeum vulgare subsp. v... 38 0.30
gb|BQ739858.1|BQ739858 HB04A12 HB Hordeum vulgare subsp. vu... 38 0.30
gb|BM441229.2|BM441229 EBed02_SQ002_M15_R endosperm, 8 DPA,... 38 0.30
gb|BM369661.2|BM369661 EBem07_SQ004_E04_R embryo, 28 DPA, n... 38 0.30
gb|BI779545.2|BI779545 EBro01_SQ004_G03_R root, 3 week, hyd... 38 0.30
gb|BM371013.2|BM371013 EBro04_SQ003_D14_R root, 3 week, sal... 38 0.30
gb|BQ757129.1|BQ757129 EBem10_SQ002_P13_R embryo, 2 Day ger... 38 0.30
gb|BQ763379.1|BQ763379 EBro02_SQ008_M03_R root, 3 week, hyd... 38 0.30
gb|BQ764087.1|BQ764087 EBro03_SQ006_B09_R root, 3 week, wat... 38 0.30
gb|BQ764684.1|BQ764684 EBca01_SQ004_H18_R carpel, pre-anthe... 38 0.30
gb|BQ768143.1|BQ768143 EBro08_SQ010_F22_R root, 3 week, dro... 38 0.30
gb|BQ768377.1|BQ768377 EBro08_SQ011_E13_R root, 3 week, dro... 38 0.30
gb|BU980742.1|BU980742 HA21J01r HA Hordeum vulgare subsp. v... 38 0.30
gb|BU990101.1|BU990101 HF24B12r HF Hordeum vulgare subsp. v... 38 0.30
gb|BU995782.1|BU995782 HM11F16r HM Hordeum vulgare subsp. v... 38 0.30
gb|BU996691.1|BU996691 HM14H01r HM Hordeum vulgare subsp. v... 38 0.30
gb|CA003444.1|CA003444 HS14H14r HS Hordeum vulgare subsp. v... 38 0.30
gb|CA017867.1|CA017867 HV06J04r HV Hordeum vulgare subsp. v... 38 0.30
gb|CA018724.1|CA018724 HV09H12r HV Hordeum vulgare subsp. v... 38 0.30
gb|CA019326.1|CA019326 HV11K06r HV Hordeum vulgare subsp. v... 38 0.30
gb|CA020962.1|CA020962 HZ38J24r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA021670.1|CA021670 HZ40M04r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA026405.1|CA026405 HZ55N05r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA030850.1|CA030850 HX08F02r HX Hordeum vulgare subsp. v... 38 0.30
gb|CA031117.1|CA031117 HX09B03r HX Hordeum vulgare subsp. v... 38 0.30
gb|BJ546947.1|BJ546947 BJ546947 K. Sato unpublished cDNA li... 38 0.30
gb|BJ547060.1|BJ547060 BJ547060 K. Sato unpublished cDNA li... 38 0.30
gb|BJ547610.1|BJ547610 BJ547610 K. Sato unpublished cDNA li... 38 0.30
gb|CB878434.1|CB878434 HP08I13T HP Hordeum vulgare subsp. v... 38 0.30
gb|CB881938.1|CB881938 HM11F16w HM Hordeum vulgare subsp. v... 38 0.30
gb|CB882608.1|CB882608 HL02F17w HL Hordeum vulgare subsp. v... 38 0.30
gb|CV058661.1|CV058661 BNEL3D9 Barley EST endosperm library... 38 0.30
gb|CK124059.1|CK124059 BES1824106n16 BES1824 Hordeum vulgar... 38 0.30
>gb|BJ469847.1|BJ469847 BJ469847 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n13 5', mRNA sequence
Length = 515
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 328 gagtgcatgatgaggcgcacgctggccgcgcacaccgactacatctacacccag 381
|||||| |||||||| | || || | ||| ||||||||||||||||||||||||
Sbjct: 124 gagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccag 177
>gb|BJ476932.1|BJ476932 BJ476932 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n13 3', mRNA sequence
Length = 469
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 328 gagtgcatgatgaggcgcacgctggccgcgcacaccgactacatctacacccag 381
|||||| |||||||| | || || | ||| ||||||||||||||||||||||||
Sbjct: 334 gagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccag 281
>gb|CD662217.1|CD662217 UCRHV18_01ag01_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01ag01, mRNA sequence
Length = 791
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 328 gagtgcatgatgaggcgcacgctggccgcgcacaccgactacatctacacccag 381
|||||| |||||||| | || || | ||| ||||||||||||||||||||||||
Sbjct: 406 gagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccag 353
>gb|BE454300.3|BE454300 HVSMEh0093J13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093J13f, mRNA sequence
Length = 531
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 267 acgctcgcagcgcacacggactacatctacacccag 302
>gb|BQ459828.1|BQ459828 HA07P11r HA Hordeum vulgare subsp. vulgare cDNA clone HA07P11
5-PRIME, mRNA sequence
Length = 472
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 247 acgctcgcagcgcacacggactacatctacacccag 282
>gb|BQ460313.1|BQ460313 HA06J23r HA Hordeum vulgare subsp. vulgare cDNA clone HA06J23
5-PRIME, mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 268 acgctcgcagcgcacacggactacatctacacccag 303
>gb|BQ460558.1|BQ460558 HA09C17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09C17
5-PRIME, mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 264 acgctcgcagcgcacacggactacatctacacccag 299
>gb|BQ657235.1|BQ657235 HA09C17u HA Hordeum vulgare subsp. vulgare cDNA clone HA09C17
3-PRIME, mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 226 acgctcgcagcgcacacggactacatctacacccag 191
>gb|BQ657540.1|BQ657540 HA07P11u HA Hordeum vulgare subsp. vulgare cDNA clone HA07P11
3-PRIME, mRNA sequence
Length = 472
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 226 acgctcgcagcgcacacggactacatctacacccag 191
>gb|BU968921.1|BU968921 HB08P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB08P21
5-PRIME, mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 268 acgctcgcagcgcacacggactacatctacacccag 303
>gb|BU970036.1|BU970036 HB13G12r BC Hordeum vulgare subsp. vulgare cDNA clone HB13G12
5-PRIME, mRNA sequence
Length = 393
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 285 acgctcgcagcgcacacggactacatctacacccag 320
>gb|BU982143.1|BU982143 HA25K09r HA Hordeum vulgare subsp. vulgare cDNA clone HA25K09
5-PRIME, mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 247 acgctcgcagcgcacacggactacatctacacccag 282
>gb|BU983690.1|BU983690 HA30K16r HA Hordeum vulgare subsp. vulgare cDNA clone HA30K16
5-PRIME, mRNA sequence
Length = 510
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 346 acgctggccgcgcacaccgactacatctacacccag 381
||||| || |||||||| ||||||||||||||||||
Sbjct: 265 acgctcgcagcgcacacggactacatctacacccag 300
>gb|BI780902.2|BI780902 EBma05_SQ001_G18_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_G18 5', mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 355 gcgcacaccgactacatctacacccag 381
|||||||| ||||||||||||||||||
Sbjct: 270 gcgcacacggactacatctacacccag 296
>gb|BI959091.1|BI959091 HVSMEn0018C03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018C03f, mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 209 cctcggcagcggcggcggcggc 230
||||||||||||||||||||||
Sbjct: 52 cctcggcagcggcggcggcggc 31
>gb|BG416232.1|BG416232 HVSMEk0010J15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0010J15f, mRNA sequence
Length = 984
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ctcggcagcggcggcggcggc 230
|||||||||||||||||||||
Sbjct: 120 ctcggcagcggcggcggcggc 140
>gb|BG416251.1|BG416251 HVSMEk0010L21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0010L21f, mRNA sequence
Length = 1046
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ctcggcagcggcggcggcggc 230
|||||||||||||||||||||
Sbjct: 116 ctcggcagcggcggcggcggc 136
>gb|BM368789.2|BM368789 EBem08_SQ004_J18_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_J18 5', mRNA sequence
Length = 555
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 atggatcggcggcggcggcgg 280
|||||||||||||||||||||
Sbjct: 74 atggatcggcggcggcggcgg 54
>gb|BM100544.2|BM100544 EBma01_SQ005_I12_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_I12 5', mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggccg 232
|||||||||||||||||||||
Sbjct: 186 cggcagcggcggcggcggccg 206
>gb|BI778718.2|BI778718 EBro01_SQ001_D08_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_D08 5', mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ctcggcagcggcggcggcggc 230
|||||||||||||||||||||
Sbjct: 118 ctcggcagcggcggcggcggc 138
>gb|BQ754111.1|BQ754111 EBca01_SQ002_N23_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_N23 5', mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 260 atggatcggcggcggcggcgg 280
|||||||||||||||||||||
Sbjct: 70 atggatcggcggcggcggcgg 50
>gb|CA003997.1|CA003997 HS16D20r HS Hordeum vulgare subsp. vulgare cDNA clone HS16D20
5-PRIME, mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.019
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 265 tcggcggcggcggcggaagggaaggggaaggag 297
|||||||||||| |||||||| |||||||||||
Sbjct: 45 tcggcggcggcg-cggaaggggaggggaaggag 14
>gb|CK123910.1|CK123910 BES1824106b24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B246 5-PRIME, mRNA sequence
Length = 758
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggccg 232
|||||||||||||||||||||
Sbjct: 35 cggcagcggcggcggcggccg 15
>gb|CK125483.1|CK125483 BES1824108k15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K158 5-PRIME, mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggccg 232
|||||||||||||||||||||
Sbjct: 210 cggcagcggcggcggcggccg 230
>gb|AL504598.1|AL504598 AL504598 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05M11V 5', mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.077
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 266 cggcggcggcggcggaagggaagggga 292
||||||||||||||| ||||| |||||
Sbjct: 133 cggcggcggcggcggnagggacgggga 107
>gb|AL506066.1|AL506066 AL506066 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N02T 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 211 tcggcagcggcggcggcggc 230
||||||||||||||||||||
Sbjct: 68 tcggcagcggcggcggcggc 49
>gb|AL508160.1|AL508160 AL508160 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07P07V 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 211 tcggcagcggcggcggcggc 230
||||||||||||||||||||
Sbjct: 64 tcggcagcggcggcggcggc 45
>gb|AL509257.1|AL509257 AL509257 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01D13u 3',
mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 48 cggcagcggcggcggcggcc 29
>gb|BG299541.1|BG299541 HVSMEa0020K17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0020K17f, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 133 gcggcgctcgcggtcctcct 152
||||||||||||||||||||
Sbjct: 319 gcggcgctcgcggtcctcct 300
>gb|BE559291.1|BE559291 HV_CEb0023H08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023H08f, mRNA sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 41 cggcagcggcggcggcggcc 22
>gb|BF619244.3|BF619244 HVSMEc0015J05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J05f, mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 213 ggcagcggcggcggcggccg 232
||||||||||||||||||||
Sbjct: 184 ggcagcggcggcggcggccg 165
>gb|BE558997.3|BE558997 HV_CEb0022C22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022C22f, mRNA sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tcggcagcggcggcggcggc 230
||||||||||||||||||||
Sbjct: 365 tcggcagcggcggcggcggc 384
>gb|AV914322.1|AV914322 AV914322 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5k15 5', mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 282 agggaaggggaaggagaagg 301
||||||||||||||||||||
Sbjct: 119 agggaaggggaaggagaagg 138
>gb|BQ467248.1|BQ467248 HS03C10r HS Hordeum vulgare subsp. vulgare cDNA clone HS03C10
5-PRIME, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 266 cggcggcggcggcggaaggg 285
||||||||||||||||||||
Sbjct: 417 cggcggcggcggcggaaggg 398
>gb|BQ753596.1|BQ753596 EBan01_SQ004_L08_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L08 5', mRNA sequence
Length = 313
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 125 cggcagcggcggcggcggcc 144
>gb|BQ764291.1|BQ764291 EBan01_SQ005_M12_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_M12 5', mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 125 cggcagcggcggcggcggcc 144
>gb|BQ764296.1|BQ764296 EBan01_SQ005_N11 _R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_N11 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 80 cggcagcggcggcggcggcc 99
>gb|CA019709.1|CA019709 HV12N18r HV Hordeum vulgare subsp. vulgare cDNA clone HV12N18
5-PRIME, mRNA sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggcc 231
||||||||||||||||||||
Sbjct: 96 cggcagcggcggcggcggcc 77
>gb|BE411850.1|BE411850 ISC009.H09F990902 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC009.H09, mRNA sequence
Length = 486
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 152 cggcagcggcggcggcggc 134
>gb|AL504639.1|AL504639 AL504639 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05O09V 5', mRNA sequence
Length = 675
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 188 cggcagcggcggcggcggc 206
>gb|AL505148.1|AL505148 AL505148 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I20V 5', mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.30
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 266 cggcggcggcggcggaagggaagggga 292
|||||||| |||||||||||| |||||
Sbjct: 153 cggcggcgacggcggaagggacgggga 127
>gb|AV836475.1|AV836475 AV836475 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd17o11, mRNA
sequence
Length = 622
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 127 cggcagcggcggcggcggc 109
>gb|BE213950.1|BE213950 HV_CEb0001L18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001L18f, mRNA sequence
Length = 913
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 66 cggcagcggcggcggcggc 48
>gb|BF262346.2|BF262346 HV_CEa0003L15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0003L15f, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 211 tcggcagcggcggcggcggccgt 233
||||| |||||||||||||||||
Sbjct: 196 tcggcggcggcggcggcggccgt 174
>gb|BG418524.1|BG418524 HVSMEk0022P13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022P13f, mRNA sequence
Length = 912
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 119 cggcagcggcggcggcggc 101
>gb|BI959066.1|BI959066 HVSMEn0018A03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018A03f, mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 49 cggcagcggcggcggcggc 31
>gb|BI959612.1|BI959612 HVSMEn0020G17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020G17f, mRNA sequence
Length = 675
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 151 cggcagcggcggcggcggc 169
>gb|BF254274.3|BF254274 HVSMEf0003I07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003I07f, mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 211 tcggcagcggcggcggcggccgt 233
||||| |||||||||||||||||
Sbjct: 145 tcggcggcggcggcggcggccgt 123
>gb|AV933682.1|AV933682 AV933682 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8b01 5', mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 262 cggcagcggcggcggcggc 244
>gb|AV934284.1|AV934284 AV934284 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11m17 5', mRNA sequence
Length = 657
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 309 cggcagcggcggcggcggc 291
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,573
Number of Sequences: 312970
Number of extensions: 232573
Number of successful extensions: 121000
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120480
Number of HSP's gapped (non-prelim): 429
length of query: 570
length of database: 175,134,539
effective HSP length: 19
effective length of query: 551
effective length of database: 169,188,109
effective search space: 93222648059
effective search space used: 93222648059
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)