BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL508686.1|AL508686 AL508686 Hordeum vulgare Barke devel... 283 5e-075
gb|BM373175.2|BM373175 EBma04_SQ003_G08_R maternal, 10 DPA,... 281 2e-074
gb|BI780055.2|BI780055 EBma08_SQ001_E13_R maternal, 28 DPA,... 281 2e-074
gb|BM098046.2|BM098046 EBpi03_SQ002_G08_R pistil, 4 DPA, no... 281 2e-074
gb|BM098908.2|BM098908 EBpi05_SQ002_G12_R pistil, 8 DPA, no... 281 2e-074
gb|BM098993.2|BM098993 EBpi05_SQ002_K09_R pistil, 8 DPA, no... 281 2e-074
gb|BQ753927.1|BQ753927 EBca01_SQ002_F11_R carpel, pre-anthe... 281 2e-074
gb|BQ764198.1|BQ764198 EBan01_SQ005_L04_R anther, yellow st... 281 2e-074
gb|BQ764791.1|BQ764791 EBca01_SQ004_M20_R carpel, pre-anthe... 281 2e-074
gb|BU975051.1|BU975051 HB29P04r BC Hordeum vulgare subsp. v... 281 2e-074
gb|BU975872.1|BU975872 HB32I24r BC Hordeum vulgare subsp. v... 281 2e-074
gb|BU978457.1|BU978457 HA13E16r HA Hordeum vulgare subsp. v... 281 2e-074
gb|BU980287.1|BU980287 HA20D19r HA Hordeum vulgare subsp. v... 281 2e-074
gb|BU994250.1|BU994250 HM06G03r HM Hordeum vulgare subsp. v... 281 2e-074
gb|BU994374.1|BU994374 HM06N12r HM Hordeum vulgare subsp. v... 281 2e-074
gb|BU994808.1|BU994808 HM08E07r HM Hordeum vulgare subsp. v... 281 2e-074
gb|BU997620.1|BU997620 HI08I07r HI Hordeum vulgare subsp. v... 281 2e-074
gb|CA022684.1|CA022684 HZ44B02r HZ Hordeum vulgare subsp. v... 281 2e-074
gb|CA022911.1|CA022911 HZ44L08r HZ Hordeum vulgare subsp. v... 281 2e-074
gb|CA026804.1|CA026804 HZ57A07r HZ Hordeum vulgare subsp. v... 281 2e-074
gb|CA028546.1|CA028546 HZ62G04r HZ Hordeum vulgare subsp. v... 281 2e-074
gb|CA029656.1|CA029656 HZ65N08r HZ Hordeum vulgare subsp. v... 281 2e-074
gb|CB858217.1|CB858217 HI06D07w HI Hordeum vulgare subsp. v... 281 2e-074
gb|CB858852.1|CB858852 HI08I07w HI Hordeum vulgare subsp. v... 281 2e-074
gb|CB880383.1|CB880383 HM06G03w HM Hordeum vulgare subsp. v... 281 2e-074
gb|CB880531.1|CB880531 HM06N12w HM Hordeum vulgare subsp. v... 281 2e-074
gb|CB880930.1|CB880930 HM08E07w HM Hordeum vulgare subsp. v... 281 2e-074
gb|CV058614.1|CV058614 BNEL39h8 Barley EST endosperm librar... 281 2e-074
gb|AL511860.1|AL511860 AL511860 Hordeum vulgare Barke devel... 276 1e-072
gb|BQ754110.1|BQ754110 EBca01_SQ002_N22_R carpel, pre-anthe... 274 5e-072
gb|CB881483.1|CB881483 HM09P06w HM Hordeum vulgare subsp. v... 264 4e-069
gb|CA027576.1|CA027576 HZ59F20r HZ Hordeum vulgare subsp. v... 248 3e-064
gb|BU995345.1|BU995345 HM09P06r HM Hordeum vulgare subsp. v... 246 1e-063
gb|CA028887.1|CA028887 HZ63I15r HZ Hordeum vulgare subsp. v... 242 2e-062
gb|BI959740.1|BI959740 HVSMEn0021C07f Hordeum vulgare rachi... 238 3e-061
gb|CB881452.1|CB881452 HM09N21w HM Hordeum vulgare subsp. v... 230 6e-059
gb|BU995314.1|BU995314 HM09N21r HM Hordeum vulgare subsp. v... 214 4e-054
gb|BM373681.2|BM373681 EBma03_SQ002_F06_R maternal, 8 DPA, ... 198 2e-049
gb|BU996885.1|BU996885 HI06D07r HI Hordeum vulgare subsp. v... 113 1e-023
gb|BU989352.1|BU989352 HF21I03r HF Hordeum vulgare subsp. v... 105 2e-021
gb|BU990455.1|BU990455 HF25B18r HF Hordeum vulgare subsp. v... 105 2e-021
gb|BU982302.1|BU982302 HA26B20r HA Hordeum vulgare subsp. v... 64 8e-009
gb|CA026026.1|CA026026 HZ53O02r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|BU987830.1|BU987830 HF15O04r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BM377991.2|BM377991 EBem04_SQ004_N05_R embryo, 12 DPA, n... 48 5e-004
gb|BM376425.2|BM376425 EBem05_SQ002_D02_R embryo, 14 DPA, n... 48 5e-004
gb|BM376797.2|BM376797 EBem05_SQ003_E08_R embryo, 14 DPA, n... 48 5e-004
gb|BM376981.2|BM376981 EBem05_SQ003_M11_R embryo, 14 DPA, n... 48 5e-004
gb|BM377308.2|BM377308 EBem05_SQ004_L23_R embryo, 14 DPA, n... 48 5e-004
gb|BM375116.2|BM375116 EBem06_SQ002_G06_R embryo, 21 DPA, n... 48 5e-004
gb|BM375201.2|BM375201 EBem06_SQ002_K09_R embryo, 21 DPA, n... 48 5e-004
gb|BM375345.2|BM375345 EBem06_SQ003_B05_R embryo, 21 DPA, n... 48 5e-004
gb|BM369853.2|BM369853 EBem07_SQ004_M19_R embryo, 28 DPA, n... 48 5e-004
gb|BU998168.1|BU998168 HI10D06r HI Hordeum vulgare subsp. v... 48 5e-004
gb|BU998403.1|BU998403 HI10P04r HI Hordeum vulgare subsp. v... 48 5e-004
gb|AL450619.1|AL450619 AL450619 Hordeum vulgare Barke etiol... 46 0.002
gb|AL507493.1|AL507493 AL507493 Hordeum vulgare Barke devel... 46 0.002
gb|BI952482.1|BI952482 HVSMEm0006K06f Hordeum vulgare green... 46 0.002
gb|BF263222.2|BF263222 HV_CEa0006C19f Hordeum vulgare seedl... 46 0.002
gb|BQ464688.1|BQ464688 HF02P16r HF Hordeum vulgare subsp. v... 46 0.002
gb|BM375547.2|BM375547 EBem06_SQ003_K19_R embryo, 21 DPA, n... 46 0.002
gb|BM369802.2|BM369802 EBem07_SQ004_K12_R embryo, 28 DPA, n... 46 0.002
gb|CA004205.1|CA004205 HS16O09r HS Hordeum vulgare subsp. v... 46 0.002
gb|CB859352.1|CB859352 HI10D06w HI Hordeum vulgare subsp. v... 46 0.002
gb|CB859592.1|CB859592 HI10P04w HI Hordeum vulgare subsp. v... 46 0.002
gb|BU999352.1|BU999352 HI14D21r HI Hordeum vulgare subsp. v... 42 0.030
gb|CA021549.1|CA021549 HZ40G19r HZ Hordeum vulgare subsp. v... 42 0.030
gb|CA025286.1|CA025286 HZ51L06r HZ Hordeum vulgare subsp. v... 42 0.030
gb|BG418517.1|BG418517 HVSMEk0022P06f Hordeum vulgare testa... 40 0.12
gb|BG366539.2|BG366539 HVSMEi0007G06f Hordeum vulgare 20 DA... 40 0.12
gb|BM374096.1|BM374096 EBma03_SQ003_K03_R maternal, 8 DPA, ... 40 0.12
gb|BQ764619.1|BQ764619 EBca01_SQ004_L09_R carpel, pre-anthe... 40 0.12
gb|BI956917.1|BI956917 HVSMEn0006A18f Hordeum vulgare rachi... 38 0.47
gb|BF620232.3|BF620232 HVSMEc0019C06f Hordeum vulgare seedl... 38 0.47
gb|BM444944.1|BM444944 EBem09_SQ006_P15_R embryo, 1 Day ger... 38 0.47
gb|BQ468204.1|BQ468204 HP01G04T HP Hordeum vulgare subsp. v... 38 0.47
gb|BI780346.2|BI780346 EBem06_SQ001_H05_R embryo, 21 DPA, n... 38 0.47
gb|BM369880.2|BM369880 EBem07_SQ004_O01_R embryo, 28 DPA, n... 38 0.47
gb|BM372892.2|BM372892 EBma04_SQ002_E17_R maternal, 10 DPA,... 38 0.47
gb|BI778075.2|BI778075 EBro07_SQ002_C14_R root, 3 week, red... 38 0.47
gb|BQ763457.1|BQ763457 EBro02_SQ008_M12_R root, 3 week, hyd... 38 0.47
gb|BQ763923.1|BQ763923 EBro03_SQ005_D22_R root, 3 week, wat... 38 0.47
gb|BU979275.1|BU979275 HA15K10r HA Hordeum vulgare subsp. v... 38 0.47
gb|BU979313.1|BU979313 HA15M05r HA Hordeum vulgare subsp. v... 38 0.47
gb|CA031353.1|CA031353 HX09L11r HX Hordeum vulgare subsp. v... 38 0.47
gb|CV058443.1|CV058443 BNEL38b10 Barley EST endosperm libra... 38 0.47
gb|CV063502.1|CV063502 BNEL90a4 Barley EST endosperm librar... 38 0.47
gb|CK124048.1|CK124048 BES1824106k10 BES1824 Hordeum vulgar... 38 0.47
gb|CK125324.1|CK125324 BES1824107l03 BES1824 Hordeum vulgar... 38 0.47
>gb|AL508686.1|AL508686 AL508686 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I02V 5',
mRNA sequence
Length = 616
Score = 283 bits (143), Expect = 5e-075
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 523 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 464
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 463 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 404
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 403 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 344
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 343 ccaccggccacggcgcgcgcaanaggcccaagtgcccatgat 302
>gb|BM373175.2|BM373175 EBma04_SQ003_G08_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_G08 5', mRNA sequence
Length = 557
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 135 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 194
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 195 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 254
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 255 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 314
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 315 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 356
>gb|BI780055.2|BI780055 EBma08_SQ001_E13_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_E13 5', mRNA sequence
Length = 534
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 135 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 194
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 195 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 254
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 255 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 314
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 315 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 356
>gb|BM098046.2|BM098046 EBpi03_SQ002_G08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_G08 5', mRNA sequence
Length = 578
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 141 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 200
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 260
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 261 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 320
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 321 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 362
>gb|BM098908.2|BM098908 EBpi05_SQ002_G12_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_G12 5', mRNA sequence
Length = 622
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 154 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 213
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 214 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 273
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 274 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 333
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 334 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 375
>gb|BM098993.2|BM098993 EBpi05_SQ002_K09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_K09 5', mRNA sequence
Length = 547
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 154 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 213
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 214 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 273
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 274 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 333
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 334 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 375
>gb|BQ753927.1|BQ753927 EBca01_SQ002_F11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_F11 5', mRNA sequence
Length = 511
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 151 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 210
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 211 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 270
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 271 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 330
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 331 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 372
>gb|BQ764198.1|BQ764198 EBan01_SQ005_L04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_L04 5', mRNA sequence
Length = 472
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 143 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 202
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 203 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 262
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 263 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 322
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 323 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 364
>gb|BQ764791.1|BQ764791 EBca01_SQ004_M20_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_M20 5', mRNA sequence
Length = 655
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 147 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 206
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 207 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 266
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 267 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 326
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 327 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 368
>gb|BU975051.1|BU975051 HB29P04r BC Hordeum vulgare subsp. vulgare cDNA clone HB29P04
5-PRIME, mRNA sequence
Length = 546
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 43 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 102
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 103 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 162
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 163 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 222
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 223 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 264
>gb|BU975872.1|BU975872 HB32I24r BC Hordeum vulgare subsp. vulgare cDNA clone HB32I24
5-PRIME, mRNA sequence
Length = 501
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 167 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 226
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 227 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 286
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 287 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 346
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 347 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 388
>gb|BU978457.1|BU978457 HA13E16r HA Hordeum vulgare subsp. vulgare cDNA clone HA13E16
5-PRIME, mRNA sequence
Length = 557
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 164 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 223
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 224 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 283
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 284 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 343
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 344 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 385
>gb|BU980287.1|BU980287 HA20D19r HA Hordeum vulgare subsp. vulgare cDNA clone HA20D19
5-PRIME, mRNA sequence
Length = 516
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 161 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 220
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 221 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 280
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 281 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 340
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 341 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 382
>gb|BU994250.1|BU994250 HM06G03r HM Hordeum vulgare subsp. vulgare cDNA clone HM06G03
5-PRIME, mRNA sequence
Length = 604
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 206 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 265
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 266 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 325
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 326 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 385
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 386 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 427
>gb|BU994374.1|BU994374 HM06N12r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N12
5-PRIME, mRNA sequence
Length = 569
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 98 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 157
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 158 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 217
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 218 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 277
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 278 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 319
>gb|BU994808.1|BU994808 HM08E07r HM Hordeum vulgare subsp. vulgare cDNA clone HM08E07
5-PRIME, mRNA sequence
Length = 499
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 45 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 104
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 105 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 164
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 165 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 224
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 225 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 266
>gb|BU997620.1|BU997620 HI08I07r HI Hordeum vulgare subsp. vulgare cDNA clone HI08I07
5-PRIME, mRNA sequence
Length = 483
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 85 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 144
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 145 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 204
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 205 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 264
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 265 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 306
>gb|CA022684.1|CA022684 HZ44B02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44B02
5-PRIME, mRNA sequence
Length = 609
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 161 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 220
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 221 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 280
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 281 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 340
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 341 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 382
>gb|CA022911.1|CA022911 HZ44L08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44L08
5-PRIME, mRNA sequence
Length = 611
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 162 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 221
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 222 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 281
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 282 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 341
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 342 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 383
>gb|CA026804.1|CA026804 HZ57A07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57A07
5-PRIME, mRNA sequence
Length = 392
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 155 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 214
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 215 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 274
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 275 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 334
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 335 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 376
>gb|CA028546.1|CA028546 HZ62G04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62G04
5-PRIME, mRNA sequence
Length = 495
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 161 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 220
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 221 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 280
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 281 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 340
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 341 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 382
>gb|CA029656.1|CA029656 HZ65N08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65N08
5-PRIME, mRNA sequence
Length = 551
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 153 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 212
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 213 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 272
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 273 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 332
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 333 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 374
>gb|CB858217.1|CB858217 HI06D07w HI Hordeum vulgare subsp. vulgare cDNA clone HI06D07
3-PRIME, mRNA sequence
Length = 540
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 509 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 450
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 449 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 390
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 389 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 330
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 329 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 288
>gb|CB858852.1|CB858852 HI08I07w HI Hordeum vulgare subsp. vulgare cDNA clone HI08I07
3-PRIME, mRNA sequence
Length = 520
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 509 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 450
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 449 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 390
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 389 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 330
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 329 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 288
>gb|CB880383.1|CB880383 HM06G03w HM Hordeum vulgare subsp. vulgare cDNA clone HM06G03
3-PRIME, mRNA sequence
Length = 565
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 499 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 440
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 439 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 380
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 379 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 320
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 319 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 278
>gb|CB880531.1|CB880531 HM06N12w HM Hordeum vulgare subsp. vulgare cDNA clone HM06N12
3-PRIME, mRNA sequence
Length = 624
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 486 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 427
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 426 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 367
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 366 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 307
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 306 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 265
>gb|CB880930.1|CB880930 HM08E07w HM Hordeum vulgare subsp. vulgare cDNA clone HM08E07
3-PRIME, mRNA sequence
Length = 552
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 513 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 454
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 453 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 394
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 393 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 334
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 333 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 292
>gb|CV058614.1|CV058614 BNEL39h8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL39h8 5' similar to
gibberellin-stimulated transcript 1 like protein - rice,
mRNA sequence
Length = 493
Score = 281 bits (142), Expect = 2e-074
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 147 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 206
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 207 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 266
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 267 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 326
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 327 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 368
>gb|AL511860.1|AL511860 AL511860 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I02u 3',
mRNA sequence
Length = 579
Score = 276 bits (139), Expect = 1e-072
Identities = 201/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 86 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 145
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct: 146 ccaaggcgagccggcacgacnactgcctcaagtactgcgggatatgctgcgccgagtgca 205
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 206 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaaga 265
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 266 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 307
>gb|BQ754110.1|BQ754110 EBca01_SQ002_N22_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_N22 5', mRNA sequence
Length = 453
Score = 274 bits (138), Expect = 5e-072
Identities = 201/222 (90%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 147 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 206
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 207 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 266
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||||| ||
Sbjct: 267 actgcgtgccgtcggggacggccggcaacaaagacgagtgcccctgctaccgcgacaaga 326
Query: 477 ccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 327 ccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 368
>gb|CB881483.1|CB881483 HM09P06w HM Hordeum vulgare subsp. vulgare cDNA clone HM09P06
3-PRIME, mRNA sequence
Length = 606
Score = 264 bits (133), Expect = 4e-069
Identities = 190/209 (90%)
Strand = Plus / Minus
Query: 310 catggctggatcagggttctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccg 369
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 493 catggctggatcagcgctctgcgacggcaagtgcggggtgaggtgctccaaggcgagccg 434
Query: 370 gcacgacgactgcctcaagtactgcgggatctgctgcgccacctgcaactgcgtgccgtc 429
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 433 gcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgcaactgcgtgccgtc 374
Query: 430 cgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatgaccaccggacacgg 489
||||| || |||||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct: 373 ggggacggccggcaacaaggacgagtgcccctgctaccgcgacaagaccaccggccacgg 314
Query: 490 caaccgcaccaggcccaagtgcccctgat 518
| |||| |||||||||||||| ||||
Sbjct: 313 cgcgcgcaagaggcccaagtgcccatgat 285
>gb|CA027576.1|CA027576 HZ59F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59F20
5-PRIME, mRNA sequence
Length = 384
Score = 248 bits (125), Expect = 3e-064
Identities = 182/201 (90%)
Strand = Plus / Plus
Query: 318 gatcagggttctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacg 377
|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gatcagcgctctgcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacg 60
Query: 378 actgcctcaagtactgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccg 437
|||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |
Sbjct: 61 actgcctcaagtactgcgggatatgctgcgccgagtgcaactgcgtgccgtcggggacgg 120
Query: 438 cgggcaacaaggacgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgca 497
| |||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||
Sbjct: 121 ccggcaacaaggacgagtgcccctgctaccgcgacaagaccaccggccacggcgcgcgca 180
Query: 498 ccaggcccaagtgcccctgat 518
|||||||||||||| ||||
Sbjct: 181 agaggcccaagtgcccatgat 201
>gb|BU995345.1|BU995345 HM09P06r HM Hordeum vulgare subsp. vulgare cDNA clone HM09P06
5-PRIME, mRNA sequence
Length = 489
Score = 246 bits (124), Expect = 1e-063
Identities = 175/192 (91%)
Strand = Plus / Plus
Query: 327 tctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctca 386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 tctgcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctca 74
Query: 387 agtactgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaaca 446
||||||||||||| ||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct: 75 agtactgcgggatatgctgcgccgagtgcaactgcgtgccgtcggggacggccggcaaca 134
Query: 447 aggacgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggccca 506
||||||||||||| ||||||||||||| ||||||||| |||||| |||| |||||||
Sbjct: 135 aggacgagtgcccctgctaccgcgacaagaccaccggccacggcgcgcgcaagaggccca 194
Query: 507 agtgcccctgat 518
||||||| ||||
Sbjct: 195 agtgcccatgat 206
>gb|CA028887.1|CA028887 HZ63I15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63I15
5-PRIME, mRNA sequence
Length = 318
Score = 242 bits (122), Expect = 2e-062
Identities = 158/170 (92%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 149 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 208
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 209 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 268
Query: 417 actgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctac 466
||||||||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 269 actgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctac 318
>gb|BI959740.1|BI959740 HVSMEn0021C07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021C07f, mRNA sequence
Length = 699
Score = 238 bits (120), Expect = 3e-061
Identities = 174/192 (90%)
Strand = Plus / Plus
Query: 327 tctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctca 386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tctgcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctca 247
Query: 387 agtactgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaaca 446
||||||||||||| ||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct: 248 agtactgcgggatatgctgcgccgagtgcaactgcgtgccgtcggggacggccggcaaca 307
Query: 447 aggacgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggccca 506
||||||||||||| |||||||| |||| ||||||||| |||||| |||| |||||||
Sbjct: 308 aggacgagtgcccctgctaccgagacaagaccaccggccacggcgcgcgcaagaggccca 367
Query: 507 agtgcccctgat 518
||||||| ||||
Sbjct: 368 agtgcccatgat 379
>gb|CB881452.1|CB881452 HM09N21w HM Hordeum vulgare subsp. vulgare cDNA clone HM09N21
3-PRIME, mRNA sequence
Length = 479
Score = 230 bits (116), Expect = 6e-059
Identities = 167/184 (90%)
Strand = Plus / Minus
Query: 335 ggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagtactgc 394
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagtactgc 412
Query: 395 gggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaaggacgag 454
||||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 411 gggatatgctgcgccgagtgcaactgcgtgccgtcggggacggccggcaacaaggacgag 352
Query: 455 tgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagtgcccc 514
||||| ||||||||||||| ||||||||| |||||| |||| ||||||||||||||
Sbjct: 351 tgcccctgctaccgcgacaagaccaccggccacggcgcgcgcaagaggcccaagtgccca 292
Query: 515 tgat 518
||||
Sbjct: 291 tgat 288
>gb|BU995314.1|BU995314 HM09N21r HM Hordeum vulgare subsp. vulgare cDNA clone HM09N21
5-PRIME, mRNA sequence
Length = 479
Score = 214 bits (108), Expect = 4e-054
Identities = 166/184 (90%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 335 ggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagtactgc 394
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11 ggcaagtgcggggtgaggtgctcca-ggcgagccggcacgacgactgcctcaagtactgc 69
Query: 395 gggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaaggacgag 454
||||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 70 gggatatgctgcgccgagtgcaactgcgtgccgtcggggacggccggcaacaaggacgag 129
Query: 455 tgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagtgcccc 514
||||| ||||||||||||| ||||||||| |||||| |||| ||||||||||||||
Sbjct: 130 tgcccctgctaccgcgacaagaccaccggccacggcgcgcgcaagaggcccaagtgccca 189
Query: 515 tgat 518
||||
Sbjct: 190 tgat 193
>gb|BM373681.2|BM373681 EBma03_SQ002_F06_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_F06 5', mRNA sequence
Length = 288
Score = 198 bits (100), Expect = 2e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgct 356
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 157 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaagtgcggggtgaggtgct 216
Query: 357 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgca 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 217 ccaaggcgagccggcacgacgactgcctcaagtactgcgggatatgctgcgccgagtgca 276
Query: 417 actgcgtgccgt 428
||||||||||||
Sbjct: 277 actgcgtgccgt 288
>gb|BU996885.1|BU996885 HI06D07r HI Hordeum vulgare subsp. vulgare cDNA clone HI06D07
5-PRIME, mRNA sequence
Length = 243
Score = 113 bits (57), Expect = 1e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 391 ctgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagga 450
||||||||| ||||||||| |||||||||||||||| ||||| || |||||||||||
Sbjct: 1 ctgcgggatatgctgcgccgagtgcaactgcgtgccgtnggggacggccggcaacaagga 60
Query: 451 cgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagtg 510
||| ||||| ||||||||||||| ||||||||| |||||| |||| |||||||||||
Sbjct: 61 cgaatgcccctgctaccgcgacaagaccaccggccacggcgcgcgcaagaggcccaagtg 120
Query: 511 cccctgat 518
||| ||||
Sbjct: 121 cccatgat 128
>gb|BU989352.1|BU989352 HF21I03r HF Hordeum vulgare subsp. vulgare cDNA clone HF21I03
5-PRIME, mRNA sequence
Length = 397
Score = 105 bits (53), Expect = 2e-021
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 418 ctgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatgac 477
|||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| |||
Sbjct: 11 ctgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaagac 70
Query: 478 caccggacacggcaaccgcaccaggcccaagtgcccctgat 518
|||||| |||||| |||| |||||||||||||| ||||
Sbjct: 71 caccggccacggcgcgcgcaagaggcccaagtgcccatgat 111
>gb|BU990455.1|BU990455 HF25B18r HF Hordeum vulgare subsp. vulgare cDNA clone HF25B18
5-PRIME, mRNA sequence
Length = 397
Score = 105 bits (53), Expect = 2e-021
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 418 ctgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatgac 477
|||||||||||| ||||| || |||||||||||||||||||| ||||||||||||| |||
Sbjct: 11 ctgcgtgccgtcggggacggccggcaacaaggacgagtgcccctgctaccgcgacaagac 70
Query: 478 caccggacacggcaaccgcaccaggcccaagtgcccctgat 518
|||||| |||||| |||| |||||||||||||| ||||
Sbjct: 71 caccggccacggcgcgcgcaagaggcccaagtgcccatgat 111
>gb|BU982302.1|BU982302 HA26B20r HA Hordeum vulgare subsp. vulgare cDNA clone HA26B20
5-PRIME, mRNA sequence
Length = 206
Score = 63.9 bits (32), Expect = 8e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 297 ccctccgcgtctccatggctggatcagggttctgcgacggcaag 340
||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 163 ccctccgcgtcgccatggctggatcagcgctctgcgacggcaag 206
>gb|CA026026.1|CA026026 HZ53O02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53O02
5-PRIME, mRNA sequence
Length = 561
Score = 56.0 bits (28), Expect = 2e-006
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 418 ctgcgtgccgtccgggaccgc-gggcaacaaggacgagtgcccatgctaccgcgacatga 476
||||||||||| |||| |||| || || ||||||||||||||| ||||||||||||||||
Sbjct: 285 ctgcgtgccgt-cggggccgctggccagcaaggacgagtgcccctgctaccgcgacatga 343
>gb|BU987830.1|BU987830 HF15O04r HF Hordeum vulgare subsp. vulgare cDNA clone HF15O04
5-PRIME, mRNA sequence
Length = 343
Score = 50.1 bits (25), Expect = 1e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 462 gctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagtgcccctgat 518
|||||||||||| ||||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 10 gctaccgcgacaagaccaccggccacggcgcgcgcaagaggcccaagtgcccatgat 66
>gb|BM377991.2|BM377991 EBem04_SQ004_N05_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_N05 5', mRNA sequence
Length = 469
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 156 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 191
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 449 gacgagtgcccatgctaccgcgacatg 475
||||||||||| |||||||||||||||
Sbjct: 285 gacgagtgcccctgctaccgcgacatg 311
>gb|BM376425.2|BM376425 EBem05_SQ002_D02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_D02 5', mRNA sequence
Length = 459
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 194 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 229
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 449 gacgagtgcccatgctaccgcgacatg 475
||||||||||| |||||||||||||||
Sbjct: 323 gacgagtgcccctgctaccgcgacatg 349
>gb|BM376797.2|BM376797 EBem05_SQ003_E08_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E08 5', mRNA sequence
Length = 364
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 149 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 184
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 449 gacgagtgcccatgctaccgcgacatg 475
||||||||||| |||||||||||||||
Sbjct: 278 gacgagtgcccctgctaccgcgacatg 304
>gb|BM376981.2|BM376981 EBem05_SQ003_M11_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_M11 5', mRNA sequence
Length = 266
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 143 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 178
>gb|BM377308.2|BM377308 EBem05_SQ004_L23_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_L23 5', mRNA sequence
Length = 458
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 160 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 195
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 449 gacgagtgcccatgctaccgcgacatg 475
||||||||||| |||||||||||||||
Sbjct: 289 gacgagtgcccctgctaccgcgacatg 315
>gb|BM375116.2|BM375116 EBem06_SQ002_G06_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_G06 5', mRNA sequence
Length = 369
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 320 tcagggttctgcgacggcaagtgcgcggtgaggtgc 355
||||||||||||| ||||||||||||||| |||||
Sbjct: 160 tcagggttctgcgcgggcaagtgcgcggtgcggtgc 195
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 449 gacgagtgcccatgctaccgcgacatg 475
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Sbjct: 289 gacgagtgcccctgctaccgcgacatg 315
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,099
Number of Sequences: 312970
Number of extensions: 142099
Number of successful extensions: 43559
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43390
Number of HSP's gapped (non-prelim): 167
length of query: 870
length of database: 175,134,539
effective HSP length: 19
effective length of query: 851
effective length of database: 169,188,109
effective search space: 143979080759
effective search space used: 143979080759
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)