BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493535.2.1
(580 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, n... 222 1e-056
gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, n... 222 1e-056
gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, n... 222 1e-056
gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, n... 222 1e-056
gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 D... 222 1e-056
gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, sal... 222 1e-056
gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedl... 214 2e-054
gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa... 214 2e-054
gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedl... 214 2e-054
gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa... 214 2e-054
gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. v... 214 2e-054
gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. v... 214 2e-054
gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. v... 214 2e-054
gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. v... 214 2e-054
gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. v... 214 2e-054
gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. v... 214 2e-054
gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. v... 214 2e-054
gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. v... 214 2e-054
gb|BM377547.1|BM377547 EBem04_SQ003_H11_R embryo, 12 DPA, n... 208 1e-052
gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, n... 190 3e-047
gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DA... 188 1e-046
gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA... 188 1e-046
gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA... 188 1e-046
gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm librar... 180 3e-044
gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm librar... 180 3e-044
gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm librar... 180 3e-044
gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm libra... 180 3e-044
gb|BU995475.1|BU995475 HM10F24r HM Hordeum vulgare subsp. v... 176 5e-043
gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. v... 172 8e-042
gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. v... 172 8e-042
gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. v... 172 8e-042
gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. v... 172 8e-042
gb|BQ767403.1|BQ767403 EBro08_SQ008_F22_R root, 3 week, dro... 170 3e-041
gb|BQ763071.1|BQ763071 EBro02_SQ007_H03_R root, 3 week, hyd... 167 5e-040
gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. v... 165 2e-039
gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm libra... 157 5e-037
gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm libra... 149 1e-034
gb|AW982718.3|AW982718 HVSMEg0004A09f Hordeum vulgare pre-a... 131 3e-029
gb|BU975545.1|BU975545 HB31H19r BC Hordeum vulgare subsp. v... 121 3e-026
gb|BU968181.1|BU968181 HB06L01r BC Hordeum vulgare subsp. v... 115 2e-024
gb|BU968194.1|BU968194 HB06L14r BC Hordeum vulgare subsp. v... 115 2e-024
gb|CV056134.1|CV056134 BNEL14C8 Barley EST endosperm librar... 109 1e-022
gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm librar... 109 1e-022
gb|BG365764.2|BG365764 HVSMEi0004B24f Hordeum vulgare 20 DA... 103 6e-021
gb|CV061340.1|CV061340 BNEL67f9 Barley EST endosperm librar... 101 2e-020
gb|BF629069.2|BF629069 HVSMEb0009M06f Hordeum vulgare seedl... 62 2e-008
gb|BE231073.2|BE231073 HVSMEg0016F11f Hordeum vulgare pre-a... 62 2e-008
gb|BG344662.2|BG344662 HVSMEg0009P10f Hordeum vulgare pre-a... 62 2e-008
gb|AW983351.3|AW983351 HVSMEg0010F06f Hordeum vulgare pre-a... 62 2e-008
gb|BJ453363.1|BJ453363 BJ453363 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ460908.1|BJ460908 BJ460908 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ464544.1|BJ464544 BJ464544 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ466896.1|BJ466896 BJ466896 K. Sato unpublished cDNA li... 62 2e-008
gb|BQ470043.1|BQ470043 HX01J18T HX Hordeum vulgare subsp. v... 62 2e-008
gb|BQ664970.1|BQ664970 HX01J18w HX Hordeum vulgare subsp. v... 62 2e-008
gb|BM100389.2|BM100389 EBma01_SQ005_B05_R maternal, 4 DPA, ... 62 2e-008
gb|BQ757010.1|BQ757010 EBem10_SQ002_I03_R embryo, 2 Day ger... 62 2e-008
gb|BQ767032.1|BQ767032 EBro08_SQ007_G20_R root, 3 week, dro... 62 2e-008
gb|BU994236.1|BU994236 HM06E11r HM Hordeum vulgare subsp. v... 62 2e-008
gb|BU995398.1|BU995398 HM10C07r HM Hordeum vulgare subsp. v... 62 2e-008
gb|CA032981.1|CA032981 HX14M06r HX Hordeum vulgare subsp. v... 62 2e-008
gb|CB880350.1|CB880350 HM06E11w HM Hordeum vulgare subsp. v... 62 2e-008
gb|CB881547.1|CB881547 HM10C07w HM Hordeum vulgare subsp. v... 62 2e-008
gb|AL506551.1|AL506551 AL506551 Hordeum vulgare Barke devel... 60 8e-008
gb|AL507041.1|AL507041 AL507041 Hordeum vulgare Barke devel... 60 8e-008
gb|AL507454.1|AL507454 AL507454 Hordeum vulgare Barke devel... 60 8e-008
gb|AL507757.1|AL507757 AL507757 Hordeum vulgare Barke devel... 60 8e-008
gb|AL507836.1|AL507836 AL507836 Hordeum vulgare Barke devel... 60 8e-008
gb|AL509985.1|AL509985 AL509985 Hordeum vulgare Barke devel... 60 8e-008
gb|AL510467.1|AL510467 AL510467 Hordeum vulgare Barke devel... 60 8e-008
gb|AL510700.1|AL510700 AL510700 Hordeum vulgare Barke devel... 60 8e-008
gb|AL511099.1|AL511099 AL511099 Hordeum vulgare Barke devel... 60 8e-008
gb|BQ459549.1|BQ459549 HA08M20r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BQ460749.1|BQ460749 HA06A23r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BQ659857.1|BQ659857 HF01P05w HF Hordeum vulgare subsp. v... 60 8e-008
gb|BM369430.2|BM369430 EBem07_SQ003_I24_R embryo, 28 DPA, n... 60 8e-008
gb|BU967738.1|BU967738 HB05E01r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU967997.1|BU967997 HB06A10r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU968175.1|BU968175 HB06K18r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU970288.1|BU970288 HB14D06r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU970444.1|BU970444 HB14K15r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU970643.1|BU970643 HB15E06r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU971210.1|BU971210 HB16P01r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU972811.1|BU972811 HB22M16r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU973219.1|BU973219 HB24C16r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU974135.1|BU974135 HB26P24r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU974879.1|BU974879 HB29G04r BC Hordeum vulgare subsp. v... 60 8e-008
gb|BU976406.1|BU976406 HA03K14r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU976561.1|BU976561 HA03O15r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU976562.1|BU976562 HA03O15u HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU978352.1|BU978352 HA12P17r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU978353.1|BU978353 HA12P17u HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU978699.1|BU978699 HA14A11r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU980804.1|BU980804 HA21L22r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU982212.1|BU982212 HA25N15r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU982721.1|BU982721 HA27G17r HA Hordeum vulgare subsp. v... 60 8e-008
gb|BU986233.1|BU986233 HF11B22r HF Hordeum vulgare subsp. v... 60 8e-008
gb|BU986838.1|BU986838 HF13A22r HF Hordeum vulgare subsp. v... 60 8e-008
gb|BU990518.1|BU990518 HF25E16r HF Hordeum vulgare subsp. v... 60 8e-008
gb|BU990756.1|BU990756 HF25P14r HF Hordeum vulgare subsp. v... 60 8e-008
gb|CA016559.1|CA016559 HV08F01u HV Hordeum vulgare subsp. v... 60 8e-008
gb|CA017675.1|CA017675 HV05O06r HV Hordeum vulgare subsp. v... 60 8e-008
gb|CA018328.1|CA018328 HV08F01r HV Hordeum vulgare subsp. v... 60 8e-008
gb|CA023611.1|CA023611 HZ46M23r HZ Hordeum vulgare subsp. v... 60 8e-008
gb|BM444343.1|BM444343 EBem09_SQ004_O01_R embryo, 1 Day ger... 58 3e-007
gb|BM375773.2|BM375773 EBem06_SQ004_G01_R embryo, 21 DPA, n... 58 3e-007
gb|BI781176.2|BI781176 EBma03_SQ001_K20_R maternal, 8 DPA, ... 58 3e-007
gb|BI780952.2|BI780952 EBma05_SQ001_K14_R maternal, 12 DPA,... 58 3e-007
gb|BQ755122.1|BQ755122 EBed02_SQ003_M15_R endosperm, 8 DPA,... 58 3e-007
gb|BQ758595.1|BQ758595 EBma07_SQ002_P05_R maternal, 21 DPA,... 58 3e-007
gb|BQ758929.1|BQ758929 EBma07_SQ003_C08_R maternal, 21 DPA,... 58 3e-007
gb|BQ758967.1|BQ758967 EBma07_SQ003_J10_R maternal, 21 DPA,... 58 3e-007
gb|BQ759130.1|BQ759130 EBma07_SQ003_K20_R maternal, 21 DPA,... 58 3e-007
gb|BQ759732.1|BQ759732 EBpi05_SQ004_A09_R pistil, 8 DPA, no... 58 3e-007
gb|BM375794.2|BM375794 EBem06_SQ004_G23_R embryo, 21 DPA, n... 50 8e-005
gb|AL505735.1|AL505735 AL505735 Hordeum vulgare Barke roots... 46 0.001
gb|AL507675.1|AL507675 AL507675 Hordeum vulgare Barke devel... 46 0.001
gb|BF626646.2|BF626646 HVSMEa0018P22f Hordeum vulgare seedl... 46 0.001
gb|BI957750.1|BI957750 HVSMEn0011A06f Hordeum vulgare rachi... 46 0.001
gb|BI958381.1|BI958381 HVSMEn0014L08f Hordeum vulgare rachi... 46 0.001
gb|BG343826.2|BG343826 HVSMEg0006N18f Hordeum vulgare pre-a... 46 0.001
gb|BE456005.3|BE456005 HVSMEg0019D20f Hordeum vulgare pre-a... 46 0.001
gb|AJ436584.1|AJ436584 AJ436584 S00002 Hordeum vulgare subs... 46 0.001
gb|BQ470689.1|BQ470689 HX03L16r HX Hordeum vulgare subsp. v... 46 0.001
gb|BM100577.2|BM100577 EBma01_SQ005_K04_R maternal, 4 DPA, ... 46 0.001
gb|BM373018.2|BM373018 EBma04_SQ002_M04_R maternal, 10 DPA,... 46 0.001
gb|BM100853.2|BM100853 EBpi01_SQ002_D01_R pistil, 1 DPA, no... 46 0.001
gb|BM100865.2|BM100865 EBpi01_SQ002_D15_R pistil, 1 DPA, no... 46 0.001
gb|BM101328.2|BM101328 EBpi01_SQ003_I17_R pistil, 1 DPA, no... 46 0.001
gb|BQ761886.1|BQ761886 EBpi01_SQ005_M05_R pistil, 1 DPA, no... 46 0.001
gb|BQ764803.1|BQ764803 EBca01_SQ004_O22_R carpel, pre-anthe... 46 0.001
gb|BQ765283.1|BQ765283 EBro03_SQ006_A20_R root, 3 week, wat... 46 0.001
gb|BU967751.1|BU967751 HB05E17r BC Hordeum vulgare subsp. v... 46 0.001
gb|BU986448.1|BU986448 HF11O09r HF Hordeum vulgare subsp. v... 46 0.001
gb|BU989449.1|BU989449 HF21M08r HF Hordeum vulgare subsp. v... 46 0.001
gb|BU998195.1|BU998195 HI10E15r HI Hordeum vulgare subsp. v... 46 0.001
gb|BU999151.1|BU999151 HI13G21r HI Hordeum vulgare subsp. v... 46 0.001
gb|CA003405.1|CA003405 HS14F13r HS Hordeum vulgare subsp. v... 46 0.001
gb|CA005817.1|CA005817 HU08K17u HU Hordeum vulgare subsp. v... 46 0.001
gb|CA020390.1|CA020390 HZ36C12r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA021107.1|CA021107 HZ39C03r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA021624.1|CA021624 HZ40K01r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA021876.1|CA021876 HZ41G17r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA024087.1|CA024087 HZ48F06r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA024227.1|CA024227 HZ48L14r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA024286.1|CA024286 HZ48O03r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA024533.1|CA024533 HZ49J05r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA024986.1|CA024986 HZ50O09r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA025799.1|CA025799 HZ53C22r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA026240.1|CA026240 HZ55F09r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA031724.1|CA031724 HX10P03r HX Hordeum vulgare subsp. v... 46 0.001
gb|CA031942.1|CA031942 HX11J01r HX Hordeum vulgare subsp. v... 46 0.001
gb|CA032116.1|CA032116 HX12B02r HX Hordeum vulgare subsp. v... 46 0.001
gb|CA032223.1|CA032223 HX12G08r HX Hordeum vulgare subsp. v... 46 0.001
gb|CB859380.1|CB859380 HI10E15w HI Hordeum vulgare subsp. v... 46 0.001
gb|CB876023.1|CB876023 HX10A22w HX Hordeum vulgare subsp. v... 46 0.001
gb|CB876529.1|CB876529 HX11J01w HX Hordeum vulgare subsp. v... 46 0.001
gb|AL510956.1|AL510956 AL510956 Hordeum vulgare Barke devel... 44 0.005
gb|AV832445.1|AV832445 AV832445 K. Sato unpublished cDNA li... 44 0.005
gb|BG342887.2|BG342887 HVSMEg0001C01f Hordeum vulgare pre-a... 44 0.005
gb|BQ754272.1|BQ754272 EBca01_SQ003_G10_R carpel, pre-anthe... 44 0.005
gb|BF629088.2|BF629088 HVSMEb0009N01f Hordeum vulgare seedl... 42 0.020
gb|BF264366.2|BF264366 HV_CEa0009D17f Hordeum vulgare seedl... 42 0.020
gb|AJ462731.1|AJ462731 AJ462731 S00002 Hordeum vulgare subs... 42 0.020
gb|BQ464500.1|BQ464500 HF02H10r HF Hordeum vulgare subsp. v... 42 0.020
gb|BQ754686.1|BQ754686 EBed01_SQ003_I10_R endosperm, 6 DPA,... 42 0.020
gb|CB880132.1|CB880132 HM05J13w HM Hordeum vulgare subsp. v... 42 0.020
gb|AL509014.1|AL509014 AL509014 Hordeum vulgare Barke devel... 40 0.078
gb|BF625529.1|BF625529 HVSMEa0011A14f Hordeum vulgare seedl... 38 0.31
gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedl... 38 0.31
gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedl... 38 0.31
gb|BF257975.2|BF257975 HVSMEf0014G07f Hordeum vulgare seedl... 38 0.31
gb|BF259978.2|BF259978 HVSMEf0020M11f Hordeum vulgare seedl... 38 0.31
gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedl... 38 0.31
gb|BI956453.1|BI956453 HVSMEn0003H10f Hordeum vulgare rachi... 38 0.31
gb|BI958912.1|BI958912 HVSMEn0017C19f Hordeum vulgare rachi... 38 0.31
gb|BI959170.1|BI959170 HVSMEn0018H20f Hordeum vulgare rachi... 38 0.31
gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedl... 38 0.31
gb|BM101377.2|BM101377 EBpi01_SQ003_K20_R pistil, 1 DPA, no... 38 0.31
gb|BQ768678.1|BQ768678 EBro08_SQ012_J09_R root, 3 week, dro... 38 0.31
gb|CA031836.1|CA031836 HX11E08r HX Hordeum vulgare subsp. v... 38 0.31
gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. v... 38 0.31
>gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_E10 5', mRNA sequence
Length = 570
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 302 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 243
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 242 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 183
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 182 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 135
>gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_P04 5', mRNA sequence
Length = 471
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 303 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 244
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 243 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 184
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 183 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 136
>gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D12 5', mRNA sequence
Length = 451
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 303 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 244
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 243 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 184
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 183 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 136
>gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_E07 5', mRNA sequence
Length = 427
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 303 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 244
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 243 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 184
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 183 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 136
>gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_J02 5', mRNA sequence
Length = 548
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 296 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 237
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 236 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 177
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 176 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 129
>gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A12 5', mRNA sequence
Length = 471
Score = 222 bits (112), Expect = 1e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 303 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 244
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 243 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 184
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 183 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 136
>gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006K17f, mRNA sequence
Length = 831
Score = 214 bits (108), Expect = 2e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 306 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 247
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct: 246 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcagggccccctgaacct 187
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 186 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 139
>gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017M20f, mRNA sequence
Length = 799
Score = 214 bits (108), Expect = 2e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 302 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 243
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct: 242 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcagggccccctgaacct 183
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 182 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 135
>gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005M15f, mRNA sequence
Length = 539
Score = 214 bits (108), Expect = 2e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 234 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 175
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct: 174 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcagggccccctgaacct 115
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 114 gtggctccgcgactcgcacgtccgcgcctccgccaccatcaccggccc 67
>gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006F02f, mRNA sequence
Length = 551
Score = 214 bits (108), Expect = 2e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 264 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 205
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct: 204 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcagggccccctgaacct 145
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 144 gtggctccgcgacttgcacgtccgcgcctccgccaccatcaccggccc 97
>gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
5-PRIME, mRNA sequence
Length = 576
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 311 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 252
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 251 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 192
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 191 gtggctccgcgactcgcacgtccgcgcctccgccac 156
>gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
3-PRIME, mRNA sequence
Length = 587
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Plus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 277 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 336
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 337 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 396
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 397 gtggctccgcgactcgcacgtccgcgcctccgccac 432
>gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04I05
3-PRIME, mRNA sequence
Length = 424
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Plus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 238 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 297
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 298 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 357
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 358 gtggctccgcgactcgcacgtccgcgcctccgccac 393
>gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. vulgare cDNA clone HB13B13
5-PRIME, mRNA sequence
Length = 400
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 315 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 256
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 255 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 196
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 195 gtggctccgcgactcgcacgtccgcgcctccgccac 160
>gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. vulgare cDNA clone HA28J09
5-PRIME, mRNA sequence
Length = 484
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 306 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 247
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 246 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 187
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 186 gtggctccgcgactcgcacgtccgcgcctccgccac 151
>gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. vulgare cDNA clone HF04L08
5-PRIME, mRNA sequence
Length = 564
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 256 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 197
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 196 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 137
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 136 gtggctccgcgactcgcacgtccgcgcctccgccac 101
>gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E05
5-PRIME, mRNA sequence
Length = 564
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 256 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 197
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 196 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 137
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 136 gtggctccgcgactcgcacgtccgcgcctccgccac 101
>gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. vulgare cDNA clone HT03F21
5-PRIME, mRNA sequence
Length = 402
Score = 214 bits (108), Expect = 2e-054
Identities = 144/156 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 313 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 254
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 253 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 194
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccac 412
||||||| |||||| |||||||||||||||||||||
Sbjct: 193 gtggctccgcgactcgcacgtccgcgcctccgccac 158
>gb|BM377547.1|BM377547 EBem04_SQ003_H11_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_H11 5', mRNA sequence
Length = 427
Score = 208 bits (105), Expect = 1e-052
Identities = 141/153 (92%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 153 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 94
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 93 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 34
Query: 377 gtggctctgcgactggcacgtccgcgcctccgc 409
||||||| |||||| ||||||||||||||||||
Sbjct: 33 gtggctccgcgactcgcacgtccgcgcctccgc 1
>gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_J18 5', mRNA sequence
Length = 419
Score = 190 bits (96), Expect = 3e-047
Identities = 147/164 (89%)
Strand = Plus / Minus
Query: 261 cagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacccc 320
||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||
Sbjct: 290 cagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaagccg 231
Query: 321 tcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgtgg 380
|||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||||||
Sbjct: 230 tcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacctgtgg 171
Query: 381 ctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||| | |||| |||||||||||| ||||||||| |||||||||
Sbjct: 170 ctccgggactcgcacgtccgcgcatccgccaccatcaccggccc 127
>gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M06f, mRNA sequence
Length = 801
Score = 188 bits (95), Expect = 1e-046
Identities = 146/163 (89%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 297 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 238
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 237 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 178
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| ||||||||||| |||| || |||||||||||||||||
Sbjct: 177 ggctcggcgactggcacctccgagcttccgccaccgccaccgg 135
>gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_K08 5', mRNA sequence
Length = 390
Score = 188 bits (95), Expect = 1e-046
Identities = 146/163 (89%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 288 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 229
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 228 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 169
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 168 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 126
>gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P21 5', mRNA sequence
Length = 410
Score = 188 bits (95), Expect = 1e-046
Identities = 146/163 (89%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 297 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 238
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 237 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 178
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 177 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 135
>gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26e6 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 180 bits (91), Expect = 3e-044
Identities = 145/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 288 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 229
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 228 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 169
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 168 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 126
>gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29b5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 180 bits (91), Expect = 3e-044
Identities = 145/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 288 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 229
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 228 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 169
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 168 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 126
>gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h3 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 180 bits (91), Expect = 3e-044
Identities = 145/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 288 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 229
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 228 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 169
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 168 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 126
>gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL61f11 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 561
Score = 180 bits (91), Expect = 3e-044
Identities = 145/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 298 ggcagtgggtggtgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 239
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 238 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 179
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| |||||| |||| |||| ||||||||||||||||||||
Sbjct: 178 ggctcggcgactcgcacctccgagcctccgccaccgccaccgg 136
>gb|BU995475.1|BU995475 HM10F24r HM Hordeum vulgare subsp. vulgare cDNA clone HM10F24
5-PRIME, mRNA sequence
Length = 479
Score = 176 bits (89), Expect = 5e-043
Identities = 132/145 (91%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 160 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 101
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 100 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccctgaacct 41
Query: 377 gtggctctgcgactggcacgtccgc 401
| ||||| |||||| ||||||||||
Sbjct: 40 g-ggctccgcgactcgcacgtccgc 17
>gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04L07
5-PRIME, mRNA sequence
Length = 408
Score = 172 bits (87), Expect = 8e-042
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 288 ggcagtgggtggcgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 229
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 228 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 169
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| || ||| |||| |||| ||||||||||||||||||||
Sbjct: 168 ggctcggcaactcgcacctccgagcctccgccaccgccaccgg 126
>gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. vulgare cDNA clone HB32I22
5-PRIME, mRNA sequence
Length = 448
Score = 172 bits (87), Expect = 8e-042
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 304 ggcagtgggtggcgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 245
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 244 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 185
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| || ||| |||| |||| ||||||||||||||||||||
Sbjct: 184 ggctcggcaactcgcacctccgagcctccgccaccgccaccgg 142
>gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L17
5-PRIME, mRNA sequence
Length = 376
Score = 172 bits (87), Expect = 8e-042
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 256 ggcagtgggtggcgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 197
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 196 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 137
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| || ||| |||| |||| ||||||||||||||||||||
Sbjct: 136 ggctcggcaactcgcacctccgagcctccgccaccgccaccgg 94
>gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06J05
5-PRIME, mRNA sequence
Length = 306
Score = 172 bits (87), Expect = 8e-042
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 186 ggcagtgggtggcgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 127
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 126 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 67
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| || ||| |||| |||| ||||||||||||||||||||
Sbjct: 66 ggctcggcaactcgcacctccgagcctccgccaccgccaccgg 24
>gb|BQ767403.1|BQ767403 EBro08_SQ008_F22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_F22 5', mRNA sequence
Length = 423
Score = 170 bits (86), Expect = 3e-041
Identities = 122/134 (91%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 137 gtggcagtgggtggtgcagaagcagcggcggcggaacccgcggcacttgccgtcggggaa 78
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 77 gccctcggtcttgcagacgttggcgcagttggacttgcgcacgcaggggcccctgaacct 18
Query: 377 gtggctctgcgact 390
||||||| ||||||
Sbjct: 17 gtggctccgcgact 4
>gb|BQ763071.1|BQ763071 EBro02_SQ007_H03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_H03 5', mRNA sequence
Length = 568
Score = 167 bits (84), Expect = 5e-040
Identities = 147/168 (87%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| |||||||||||||| ||||||||||| | ||||||| |||| |||||||
Sbjct: 299 gtggcagtgggtggtgcagaagcaccggcggcggaacctgcggcactggccgtcggggaa 240
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| |||||||||||||||||||||||| ||| | |||||||||| ||||||
Sbjct: 239 gccctcggtcttgcagacgttggcgcagttggacctgcgcacgcaggggcccatgaacct 180
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| | || | ||||||| |||||||||||||| |||||||||
Sbjct: 179 gtggctccgtgagttgcacgtctgcgcctccgccaccatcaccggccc 132
>gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. vulgare cDNA clone HB03I09
5-PRIME, mRNA sequence
Length = 488
Score = 165 bits (83), Expect = 2e-039
Identities = 143/163 (87%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||| | ||||||||| ||||||||||||| |
Sbjct: 301 ggcagtgggtggcgcagaagcagcggcggcgaaggccgcggcagttgccgccggggaagc 242
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||
Sbjct: 241 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacctgt 182
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| || ||| |||| |||| ||||||||||||||||||||
Sbjct: 181 ggctcggcaactcgcacctccgagcctccgccaccgccaccgg 139
>gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112b8 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 157 bits (79), Expect = 5e-037
Identities = 142/163 (87%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 154 ggcagtgggtggtgcaaaagcagcggcggcggaggccgcggcagttgccgccggggaagc 213
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 214 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 273
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| | |||| |||| | || ||||||||||||||||||||
Sbjct: 274 ggctcggggactcgcaccttcgagcctccgccaccgccaccgg 316
>gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10F10 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 149 bits (75), Expect = 1e-034
Identities = 141/163 (86%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 154 ggcagtgggtggtgcaaaagcagcggcggcggaggccgcggcagttgccgccggggaagc 213
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||| ||||||||||||||| | ||| | ||||||||||| |||| |||
Sbjct: 214 cctcggtccggcaaacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacatgt 273
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
||||| | |||| | || |||| ||||||||||||||||||||
Sbjct: 274 ggctcggagactcggacctccgagcctccgccaccgccaccgg 316
>gb|AW982718.3|AW982718 HVSMEg0004A09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004A09f, mRNA sequence
Length = 555
Score = 131 bits (66), Expect = 3e-029
Identities = 137/158 (86%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 268 tggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacccctcggtcc 327
||||||||||||||||||||||||| |||||||| ||||| |||| || || ||||| |
Sbjct: 293 tggtgcagaagcagcggcggcggaacccgcggcatttgccgtcgggaaagcc-tcggttc 235
Query: 328 tgc-agacgttggcgcagttggaccggcggaggcaggggccccggaacctgtggctctgc 386
||| |||||||||||||||||||| ||| | |||||| |||| |||||||||| || ||
Sbjct: 234 tgccagacgttggcgcagttggacttgcgcacgcagggccccctgaacctgtggttccgc 175
Query: 387 gactggcacgtccgcgcctccgccaccgccaccggccc 424
|||| |||||||||||| ||||||||| |||||||||
Sbjct: 174 gactcgcacgtccgcgcttccgccaccatcaccggccc 137
>gb|BU975545.1|BU975545 HB31H19r BC Hordeum vulgare subsp. vulgare cDNA clone HB31H19
5-PRIME, mRNA sequence
Length = 245
Score = 121 bits (61), Expect = 3e-026
Identities = 82/89 (92%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 111 ggcagtgggtggcgcagaagcagcggcggcggaggccgcggcagttgccgccggggaagc 52
Query: 319 cctcggtcctgcagacgttggcgcagttg 347
||||||||| |||||||||||||||||||
Sbjct: 51 cctcggtccggcagacgttggcgcagttg 23
>gb|BU968181.1|BU968181 HB06L01r BC Hordeum vulgare subsp. vulgare cDNA clone HB06L01
5-PRIME, mRNA sequence
Length = 238
Score = 115 bits (58), Expect = 2e-024
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| ||| |||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 121 ggcagtgggtggcgcaaaagcagcggcggcggaggccgcggcagttgccgccggggaagc 180
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||
Sbjct: 181 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacct 238
>gb|BU968194.1|BU968194 HB06L14r BC Hordeum vulgare subsp. vulgare cDNA clone HB06L14
5-PRIME, mRNA sequence
Length = 238
Score = 115 bits (58), Expect = 2e-024
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||| ||| |||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 121 ggcagtgggtggcgcaaaagcagcggcggcggaggccgcggcagttgccgccggggaagc 180
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||
Sbjct: 181 cctcggtccggcagacgttggcgcagttgtgtccgcgcacgcaggggcccctgaacct 238
>gb|CV056134.1|CV056134 BNEL14C8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL14C8 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 487
Score = 109 bits (55), Expect = 1e-022
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||||||| || ||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 209 ggcagtgggtggtgcaaaatcagcggcggcggaggccgcggcatttgccgccggggaagc 268
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||| ||||||||||| ||| | ||| | ||||||||||| |||| |||
Sbjct: 269 cctcggtccggcaaacgttggcgcatttgtgtccgcgcacgcaggggcccctgaacatgt 328
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
|| | | |||| |||| | || |||| |||||||||||||||
Sbjct: 329 ggttgggagactcgcaccttcgagccttcgccaccgccaccgg 371
>gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86c5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 487
Score = 109 bits (55), Expect = 1e-022
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||||||| || ||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 209 ggcagtgggtggtgcaaaaacagcggcggcggaggccgcggcatttgccgccggggaagc 268
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||| ||||||||||| ||| | ||| | ||||||||||| |||| |||
Sbjct: 269 cctcggtccggcaaacgttggcgcaattgtgtccgcgcacgcaggggcccctgaacatgt 328
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
|| || | |||| | || | || |||| |||||||||||||||
Sbjct: 329 ggttcggggactcgaaccttcgagccttcgccaccgccaccgg 371
>gb|BG365764.2|BG365764 HVSMEi0004B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004B24f, mRNA sequence
Length = 587
Score = 103 bits (52), Expect = 6e-021
Identities = 139/168 (82%)
Strand = Plus / Minus
Query: 257 gtggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaa 316
||||||||| ||||||||| |||||||||| ||| | | ||| ||||| |||||||
Sbjct: 295 gtggcagtgggtggtgcagcagcagcggcgtcggtaacataggccagtgccgtcggggaa 236
Query: 317 cccctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacct 376
|| |||||| |||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct: 235 gccttcggtctagcagacgttggcgcagttggacatgcgcacgcagggccccctgaacct 176
Query: 377 gtggctctgcgactggcacgtccgcgcctccgccaccgccaccggccc 424
||||||| |||| | ||| ||||| |||||||||||| |||||||||
Sbjct: 175 gtggctccgcgaatagcatgtccgggcctccgccaccatcaccggccc 128
>gb|CV061340.1|CV061340 BNEL67f9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67f9 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 481
Score = 101 bits (51), Expect = 2e-020
Identities = 135/163 (82%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||| |||||||| |||||||||||||||| ||||||||| |||||||||| || |
Sbjct: 203 ggcagtgggtggtgcaaaagcagcggcggcggaggccgcggcatttgccgccgggaaagc 262
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
||||||||| ||| ||||||||||| ||| | ||| | ||||||||||| |||| |||
Sbjct: 263 cctcggtccggcaaacgttggcgcatttgtgtccgcgcacgcaggggcccctgaacatgt 322
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccgg 421
|| | | |||| | || | || |||| |||||||||||||||
Sbjct: 323 ggttgggggacttgaaccttcgagccttcgccaccgccaccgg 365
>gb|BF629069.2|BF629069 HVSMEb0009M06f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009M06f, mRNA sequence
Length = 821
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 356 gaggcaggggccccggaacctgtggctctgcgactggcacgtccgcgcctccgcc 410
|||||||| |||| |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 197 gaggcaggtgcccttgaacttgtggctctgcgacaggcacgtccgggcctccgcc 143
>gb|BE231073.2|BE231073 HVSMEg0016F11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016F11f, mRNA sequence
Length = 891
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 356 gaggcaggggccccggaacctgtggctctgcgactggcacgtccgcgcctccgcc 410
|||||||| |||| |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 197 gaggcaggtgcccttgaacttgtggctctgcgacaggcacgtccgggcctccgcc 143
>gb|BG344662.2|BG344662 HVSMEg0009P10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009P10f, mRNA sequence
Length = 605
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 356 gaggcaggggccccggaacctgtggctctgcgactggcacgtccgcgcctccgcc 410
|||||||| |||| |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 197 gaggcaggtgcccttgaacttgtggctctgcgacaggcacgtccgggcctccgcc 143
>gb|AW983351.3|AW983351 HVSMEg0010F06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010F06f, mRNA sequence
Length = 608
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 356 gaggcaggggccccggaacctgtggctctgcgactggcacgtccgcgcctccgcc 410
|||||||| |||| |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 196 gaggcaggtgcccttgaacttgtggctctgcgacaggcacgtccgggcctccgcc 142
>gb|BJ453363.1|BJ453363 BJ453363 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42l10 5', mRNA sequence
Length = 581
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 356 gaggcaggggccccggaacctgtggctctgcgactggcacgtccgcgcctccgcc 410
|||||||| |||| |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 201 gaggcaggtgcccttgaacttgtggctctgcgacaggcacgtccgggcctccgcc 147
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,669
Number of Sequences: 312970
Number of extensions: 113669
Number of successful extensions: 41185
Number of sequences better than 0.5: 182
Number of HSP's better than 0.5 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40859
Number of HSP's gapped (non-prelim): 264
length of query: 580
length of database: 175,134,539
effective HSP length: 19
effective length of query: 561
effective length of database: 169,188,109
effective search space: 94914529149
effective search space used: 94914529149
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)