BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 250 8e-065
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 220 7e-056
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 200 7e-050
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 200 7e-050
gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachi... 190 6e-047
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 186 1e-045
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 149 2e-034
gb|BM442285.2|BM442285 EBan01_SQ002_M08_R anther, yellow st... 50 2e-004
gb|BQ763080.1|BQ763080 EBro02_SQ007_J04_R root, 3 week, hyd... 50 2e-004
gb|BG343061.1|BG343061 HVSMEg0001O09f Hordeum vulgare pre-a... 46 0.002
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 44 0.009
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 44 0.009
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 42 0.037
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 42 0.037
gb|BF625566.3|BF625566 HVSMEa0011G18f Hordeum vulgare seedl... 42 0.037
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 42 0.037
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 42 0.037
gb|BE216672.1|BE216672 HV_CEb0011C20f Hordeum vulgare seedl... 42 0.037
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 42 0.037
gb|BI958925.1|BI958925 HVSMEn0017E07f Hordeum vulgare rachi... 42 0.037
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 42 0.037
gb|BE519795.3|BE519795 HV_CEb0021E06f Hordeum vulgare seedl... 42 0.037
gb|AV913045.1|AV913045 AV913045 K. Sato unpublished cDNA li... 42 0.037
gb|BJ452943.1|BJ452943 BJ452943 K. Sato unpublished cDNA li... 42 0.037
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 42 0.037
gb|BM369465.2|BM369465 EBem07_SQ003_K17_R embryo, 28 DPA, n... 42 0.037
gb|BQ767494.1|BQ767494 EBro08_SQ009_F03_R root, 3 week, dro... 42 0.037
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 42 0.037
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 42 0.037
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 42 0.037
gb|AL501080.1|AL501080 AL501080 Hordeum vulgare Barke roots... 40 0.15
gb|AL506586.1|AL506586 AL506586 Hordeum vulgare Barke devel... 40 0.15
gb|BF263732.1|BF263732 HV_CEa0007I07f Hordeum vulgare seedl... 40 0.15
gb|BF267122.2|BF267122 HV_CEa0017A07f Hordeum vulgare seedl... 40 0.15
gb|AV909761.1|AV909761 AV909761 K. Sato unpublished cDNA li... 40 0.15
gb|AV911480.1|AV911480 AV911480 K. Sato unpublished cDNA li... 40 0.15
gb|AV911663.1|AV911663 AV911663 K. Sato unpublished cDNA li... 40 0.15
gb|AV923762.1|AV923762 AV923762 K. Sato unpublished cDNA li... 40 0.15
gb|BQ466786.1|BQ466786 HS01J06T HS Hordeum vulgare subsp. v... 40 0.15
gb|BQ471281.1|BQ471281 HV01P18T HV Hordeum vulgare subsp. v... 40 0.15
gb|BQ658353.1|BQ658353 HB09H23w BC Hordeum vulgare subsp. v... 40 0.15
gb|BQ662291.1|BQ662291 HS01J06w HS Hordeum vulgare subsp. v... 40 0.15
gb|BI777702.2|BI777702 EBro08_SQ001_I03_R root, 3 week, dro... 40 0.15
gb|BQ753503.1|BQ753503 EBan01_SQ004_H06_R anther, yellow st... 40 0.15
gb|BQ754641.1|BQ754641 EBed01_SQ003_G08_R endosperm, 6 DPA,... 40 0.15
gb|BQ760044.1|BQ760044 EBpi07_SQ003_D05_R pistil, 12 DPA, n... 40 0.15
gb|BU995137.1|BU995137 HM09F03r HM Hordeum vulgare subsp. v... 40 0.15
gb|BU995922.1|BU995922 HM11M15r HM Hordeum vulgare subsp. v... 40 0.15
gb|CA011413.1|CA011413 HT05K04u HT Hordeum vulgare subsp. v... 40 0.15
gb|CA016959.1|CA016959 HV05I03u HV Hordeum vulgare subsp. v... 40 0.15
gb|CA021031.1|CA021031 HZ38O09r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CA026429.1|CA026429 HZ55O07r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CA026939.1|CA026939 HZ57G16r HZ Hordeum vulgare subsp. v... 40 0.15
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 250 bits (126), Expect = 8e-065
Identities = 156/166 (93%)
Strand = Plus / Plus
Query: 232 cgccgccgaccccgaagacgccatcggtggggcgtgcgggttcggggatctggggaaaca 291
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 3 cgccgccgaccccggcgacgccatcggtggcgcgtgcgggttcggggatctggggaagca 62
Query: 292 cggctacgggatggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtg 351
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 63 cgggtacgggatggcgacggtggggctgagcacggcgctgttcgagcgcggcgccgcctg 122
Query: 352 cggcggctgctacgaggtcaagtgcgtcgaggacctcaagcactgc 397
||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 123 cggcggctgctacgaggtcaagtgcgtggaggacctcaagtactgc 168
Score = 105 bits (53), Expect = 3e-021
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
|||||||||||||||||||||| || |||||||| |||||||| || ||| ||||||| |
Sbjct: 323 tcatgcccatccagtaccgccgcgtcaagtgccttcgcgaaggcggcgtgcggttctcag 382
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|| || | ||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 383 tctctgggaagagcttcttcttcacagtcctaatcagcaatgtcggtggcgctggtgatg 442
Query: 540 ttaggtctgtgaagatcaaaggaac 564
| || || |||||||||||||||
Sbjct: 443 tcagatccaggaagatcaaaggaac 467
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccag 433
||||||||||||||||||||| |||||| |||||||||||
Sbjct: 249 ctgcaacccgcccaaccaccacttcctcctgcccatccag 288
>gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O13f, mRNA sequence
Length = 669
Score = 220 bits (111), Expect = 7e-056
Identities = 192/219 (87%)
Strand = Plus / Plus
Query: 178 ctcctacggctcctccgcgctctccgattggcgccccgccaaggcatcctactacgccgc 237
||||||||| |||| |||||||||||| |||||| ||||||| | | ||||| ||||||
Sbjct: 170 ctcctacgggtcctgcgcgctctccgaatggcgcaacgccaagtcctactacttcgccgc 229
Query: 238 cgaccccgaagacgccatcggtggggcgtgcgggttcggggatctggggaaacacggcta 297
|||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||| ||
Sbjct: 230 cgaccccggcgacgccatcggtggcgcgtgcgggttctgggatctggggaagcacgggta 289
Query: 298 cgggatggcgacggtggggctgagcacggcgctgtttgagcgcggcgcggcgtgcggcgg 357
|||||||||||||||||||||||||||||||||| | | |||||||| | ||| ||||
Sbjct: 290 cgggatggcgacggtggggctgagcacggcgctgatctatcgcggcgcctcctgccgcgg 349
Query: 358 ctgctacgaggtcaagtgcgtcgaggacctcaagcactg 396
||||||||||||||| ||||| || ||||| ||||||||
Sbjct: 350 ctgctacgaggtcaactgcgtggatgacctgaagcactg 388
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaa 460
||||||||||||||||||| || || |||||||| ||||||
Sbjct: 544 tcatgcccatccagtaccggcgcgtcaagtgccttcgcgaa 584
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 395 tgcaacccgcccaaccaccatttcctcatgcccat 429
|||||||||||||||||||| || ||| |||||||
Sbjct: 471 tgcaacccgcccaaccaccactttctcctgcccat 505
Score = 40.1 bits (20), Expect = 0.15
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 95 gagccatggctccgccgctcctgctcttcttcctcctcct 134
||||||||||||| |||||||| ||| || || |||||||
Sbjct: 91 gagccatggctcccccgctcctactcgtcctcttcctcct 130
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 200 bits (101), Expect = 7e-050
Identities = 275/333 (82%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
|||||||||||||||||||||| || |||||||| |||||||| || ||| ||||||| |
Sbjct: 205 tcatgcccatccagtaccgccgcgtcaagtgccttcgcgaaggcggcgtgcggttctcag 264
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|| || | ||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 265 tctctgggaagagcttcttcttcacagtcctaatcagcaatgtcggtggcgctggtgatg 324
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
| || || ||||||||||||||||| || || |||||| ||||||||||||||||
Sbjct: 325 tcagatcagtgaagatcaaaggaacagactctggctggctcgacatgggccgcaactggg 384
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagct 659
||||| | ||||||||||||| || | | || ||||| |||| |||||||||| ||
Sbjct: 385 gccagatatggcacatcaacttagatctaacagggcagccggtatcctttgagctcacct 444
Query: 660 caagcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggca 719
| || ||| ||| |||| |||| | ||| |||||||||||||||||||||||||| ||||
Sbjct: 445 cgagtgatggcacgacgatgacgaattttaacgtcgtgcccaaggattgggagtttggca 504
Query: 720 agacatacacggggaagcagtttcttctgtaga 752
| |||||||| || |||||||| ||||| ||||
Sbjct: 505 aaacatacaccggcaagcagttccttctctaga 537
Score = 79.8 bits (40), Expect = 2e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgtcgaggacctcaagcactgc 397
||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 3 tgcggcggctgctacgaggtcaagtgcgtggaggacctcaagtactgc 50
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccag 433
||||||||||||||||||||| |||||| |||||||||||
Sbjct: 131 ctgcaacccgcccaaccaccacttcctcctgcccatccag 170
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 200 bits (101), Expect = 7e-050
Identities = 275/333 (82%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
|||||||||||||||||||||| || |||||||| |||||||| || ||| ||||||| |
Sbjct: 205 tcatgcccatccagtaccgccgcgtcaagtgccttcgcgaaggcggcgtgcggttctcag 264
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|| || | ||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 265 tctctgggaagagcttcttcttcacagtcctaatcagcaatgtcggtggcgctggtgatg 324
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
| || || ||||||||||||||||| || || |||||| ||||||||||||||||
Sbjct: 325 tcagatcagtgaagatcaaaggaacagactctggctggctcgacatgggccgcaactggg 384
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagct 659
||||| | ||||||||||||| || | | || ||||| |||| |||||||||| ||
Sbjct: 385 gccagatatggcacatcaacttagatctaacagggcagccggtatcctttgagctcacct 444
Query: 660 caagcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggca 719
| || ||| ||| |||| |||| | ||| |||||||||||||||||||||||||| ||||
Sbjct: 445 cgagtgatggcacgacgatgacgaattttaacgtcgtgcccaaggattgggagtttggca 504
Query: 720 agacatacacggggaagcagtttcttctgtaga 752
| |||||||| || |||||||| ||||| ||||
Sbjct: 505 aaacatacaccggcaagcagttccttctctaga 537
Score = 79.8 bits (40), Expect = 2e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgtcgaggacctcaagcactgc 397
||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 3 tgcggcggctgctacgaggtcaagtgcgtggaggacctcaagtactgc 50
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccag 433
||||||||||||||||||||| |||||| |||||||||||
Sbjct: 131 ctgcaacccgcccaaccaccacttcctcctgcccatccag 170
>gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007F13f, mRNA sequence
Length = 619
Score = 190 bits (96), Expect = 6e-047
Identities = 193/224 (86%), Gaps = 4/224 (1%)
Strand = Plus / Plus
Query: 95 gagccatggctccgccgctcctgctcttcttcctcctcctccccctcctcacggccctcg 154
||||||||||||| |||||||| ||| || || ||||||||| ||||| | ||| |||
Sbjct: 91 gagccatggctcccccgctcctcctcgtcctcttcctcctcctcctcccc---gccatcg 147
Query: 155 ctgacggacaccagcacctgtttctcctacggctcctccgcgctctccgattggcgcccc 214
| | ||| |||||||||| | ||||||||||||||||||||||||||| |||||| |
Sbjct: 148 ccgccggccaccagcacccctc-ctcctacggctcctccgcgctctccgaatggcgcaac 206
Query: 215 gccaaggcatcctactacgccgccgaccccgaagacgccatcggtggggcgtgcgggttc 274
|||||| | ||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 207 gccaagtcctcctacttcgccgccgaccccggcgacgccatcggtggcgcgtgcgggttc 266
Query: 275 ggggatctggggaaacacggctacgggatggcgacggtggggct 318
||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 267 ngggatctggggaagcacgggtacgggatggcgacngtggggct 310
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 186 bits (94), Expect = 1e-045
Identities = 256/310 (82%)
Strand = Plus / Plus
Query: 420 tcatgcccatccagtaccgccgtgttaagtgcctccgcgaaggtggtgtgaggttctccg 479
|||||||||||||||||||||| || |||||||| |||||||| || ||| ||||||| |
Sbjct: 205 tcatgcccatccagtaccgccgcgtcaagtgccttcgcgaaggcggcgtgcggttctcag 264
Query: 480 tcaacggtcggcacttcttcttcacagtcctaatcagcaacgttggtggcgcgggtgatg 539
|| || | ||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 265 tctctgggaagagcttcttcttcacagtcctaatcagcaatgtcggtggcgctggtgatg 324
Query: 540 ttaggtctgtgaagatcaaaggaacggagctaggatggctccctatgggccgcaactggg 599
| || || ||||||||||||||||| || || |||||| ||||||||||||||||
Sbjct: 325 tcagatcagtgaagatcaaaggaacagactctggctggctcgacatgggccgcaactggg 384
Query: 600 gccaggtgtggcacatcaactgtgacatgaggggacagcctctatcgtttgagctcagct 659
||||| | ||||||||||||| || | | || ||||| |||| |||||||||| ||
Sbjct: 385 gccagatatggcacatcaacttagatctaacagggcagccggtatcctttgagctcacct 444
Query: 660 caagcgatagcaagacgctgaccagtttcaacgtcgtgcccaaggattgggagttcggca 719
| || ||| ||| |||| |||| | ||| |||||||||||||||||||||||||| ||||
Sbjct: 445 cgagtgatggcacgacgatgacgaattttaacgtcgtgcccaaggattgggagtttggca 504
Query: 720 agacatacac 729
| ||||||||
Sbjct: 505 aaacatacac 514
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 394 ctgcaacccgcccaaccaccatttcctcatgcccatccag 433
||||||||||||||||||||| |||||| |||||||||||
Sbjct: 131 ctgcaacccgcccaaccaccacttcctcctgcccatccag 170
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 350 tgcggcggctgctacgaggtcaagtgcgtcgaggacctcaagcactgc 397
||||||||||| |||| |||||||||||| |||||||||||| |||||
Sbjct: 3 tgcggcggctgatacgcggtcaagtgcgtggaggacctcaagtactgc 50
>gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A18
5-PRIME, mRNA sequence
Length = 535
Score = 149 bits (75), Expect = 2e-034
Identities = 204/247 (82%)
Strand = Plus / Minus
Query: 506 gtcctaatcagcaacgttggtggcgcgggtgatgttaggtctgtgaagatcaaaggaacg 565
|||||||||||||| || |||||||| |||||||| || || |||||||||||||||||
Sbjct: 535 gtcctaatcagcaatgtcggtggcgctggtgatgtcagatcagtgaagatcaaaggaaca 476
Query: 566 gagctaggatggctccctatgggccgcaactggggccaggtgtggcacatcaactgtgac 625
|| || |||||| ||||||||||||||||||||| | ||||||||||||| ||
Sbjct: 475 gactctggctggctcgacatgggccgcaactggggccagatatggcacatcaacttagat 416
Query: 626 atgaggggacagcctctatcgtttgagctcagctcaagcgatagcaagacgctgaccagt 685
| | || ||||| |||| |||||||||| ||| || ||| ||| |||| |||| | |
Sbjct: 415 ctaacagggcagccggtatcctttgagctcacctcgagtgatggcacgacgatgacgaat 356
Query: 686 ttcaacgtcgtgcccaaggattgggagttcggcaagacatacacggggaagcagtttctt 745
|| |||||||||||||||||||||||||| ||||| |||||||| || |||||||| |||
Sbjct: 355 tttaacgtcgtgcccaaggattgggagtttggcaaaacatacaccggcaagcagttcctt 296
Query: 746 ctgtaga 752
|| ||||
Sbjct: 295 ctctaga 289
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 942 agaggcttgatgtatcattc 961
||||||||||||||||||||
Sbjct: 34 agaggcttgatgtatcattc 15
>gb|BM442285.2|BM442285 EBan01_SQ002_M08_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_M08 5', mRNA sequence
Length = 393
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 113 tcctgctcttcttcctcctcctccccctcctcacggc 149
|||||||||||||| ||||||||| |||||| |||||
Sbjct: 232 tcctgctcttcttcttcctcctcctcctcctaacggc 268
>gb|BQ763080.1|BQ763080 EBro02_SQ007_J04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_J04 5', mRNA sequence
Length = 723
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 113 tcctgctcttcttcctcctcctccccctcctcacggc 149
|||||||||||||| ||||||||| |||||| |||||
Sbjct: 32 tcctgctcttcttcttcctcctcctcctcctaacggc 68
>gb|BG343061.1|BG343061 HVSMEg0001O09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001O09f, mRNA sequence
Length = 897
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 114 cctgctcttcttcctcctcctcc 136
|||||||||||||||||||||||
Sbjct: 17 cctgctcttcttcctcctcctcc 39
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 44.1 bits (22), Expect = 0.009
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 275 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcntgctacgagctcaagtg 334
Query: 376 c 376
|
Sbjct: 335 c 335
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.009
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| | |||||| || |||||||
Sbjct: 127 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtggtgctacnagctcaagtg 186
Query: 376 c 376
|
Sbjct: 187 c 187
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 165 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 224
Query: 376 c 376
|
Sbjct: 225 c 225
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 240 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 299
Query: 376 c 376
|
Sbjct: 300 c 300
>gb|BF625566.3|BF625566 HVSMEa0011G18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011G18f, mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctcacggc 149
|||||||||||| ||||||||||||
Sbjct: 86 tcctcctcctcctcctcctcacggc 110
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 270 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 329
Query: 376 c 376
|
Sbjct: 330 c 330
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 289 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 348
Query: 376 c 376
|
Sbjct: 349 c 349
>gb|BE216672.1|BE216672 HV_CEb0011C20f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011C20f, mRNA sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 cttcttcctcctcctccccctcctc 144
||||||||||||||||||| |||||
Sbjct: 89 cttcttcctcctcctccccatcctc 113
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 263 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 322
Query: 376 c 376
|
Sbjct: 323 c 323
>gb|BI958925.1|BI958925 HVSMEn0017E07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017E07f, mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccc 139
|||||||||||||||||||||
Sbjct: 24 tcttcttcctcctcctccccc 44
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 27 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 86
Query: 376 c 376
|
Sbjct: 87 c 87
>gb|BE519795.3|BE519795 HV_CEb0021E06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021E06f, mRNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcct 143
|||||||||||||||||| ||||||
Sbjct: 82 tcttcttcctcctcctcctcctcct 58
>gb|AV913045.1|AV913045 AV913045 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j04 5', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctcacggc 149
|||||||||||| ||||||||||||
Sbjct: 85 tcctcctcctcctcctcctcacggc 109
>gb|BJ452943.1|BJ452943 BJ452943 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41a14 5', mRNA sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctcacggc 149
|||||||||||| ||||||||||||
Sbjct: 66 tcctcctcctcctcctcctcacggc 90
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 267 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 326
Query: 376 c 376
|
Sbjct: 327 c 327
>gb|BM369465.2|BM369465 EBem07_SQ003_K17_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_K17 5', mRNA sequence
Length = 295
Score = 42.1 bits (21), Expect = 0.037
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| ||||||||||||||| |||||||
Sbjct: 191 ctcctcctcctcttcctcctcctcctcctcctc 159
Score = 42.1 bits (21), Expect = 0.037
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| |||||| |||||||||||| |||||||
Sbjct: 188 ctcctcctcttcctcctcctcctcctcctcctc 156
>gb|BQ767494.1|BQ767494 EBro08_SQ009_F03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_F03 5', mRNA sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.037
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 113 tcctgctcttcttcctcctcctccccctcctca 145
|||| ||| ||||||||||||||| ||||||||
Sbjct: 81 tcctcctcctcttcctcctcctcctcctcctca 113
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 241 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 300
Query: 376 c 376
|
Sbjct: 301 c 301
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 107 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 166
Query: 376 c 376
|
Sbjct: 167 c 167
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.037
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 316 gctgagcacggcgctgtttgagcgcggcgcggcgtgcggcggctgctacgaggtcaagtg 375
|||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 278 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctcaagtg 337
Query: 376 c 376
|
Sbjct: 338 c 338
>gb|AL501080.1|AL501080 AL501080 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02P16u 3', mRNA sequence
Length = 407
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 274 ctcttcttcctcctcctcttcctcctca 301
>gb|AL506586.1|AL506586 AL506586 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03J18T 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 172 tcctcctcctccccctcctc 153
>gb|BF263732.1|BF263732 HV_CEa0007I07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007I07f, mRNA sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 184 tcctcctcctccccctcctc 165
>gb|BF267122.2|BF267122 HV_CEa0017A07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017A07f, mRNA sequence
Length = 865
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
||||||| ||||||||||||||||
Sbjct: 724 ttcttccccctcctccccctcctc 701
>gb|AV909761.1|AV909761 AV909761 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13o08 5', mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 523 ctcttcttcctcctcctcttcctcctca 496
>gb|AV911480.1|AV911480 AV911480 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13f06 3', mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 262 ctcttcttcctcctcctcttcctcctca 289
>gb|AV911663.1|AV911663 AV911663 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13o08 3', mRNA sequence
Length = 722
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 190 ctcttcttcctcctcctcttcctcctca 217
>gb|AV923762.1|AV923762 AV923762 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1f24 5', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 58 tcttcttcctcctcctcccc 77
>gb|BQ466786.1|BQ466786 HS01J06T HS Hordeum vulgare subsp. vulgare cDNA clone HS01J06
5-PRIME, mRNA sequence
Length = 330
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 289 tcctcctcctccccctcctc 270
>gb|BQ471281.1|BQ471281 HV01P18T HV Hordeum vulgare subsp. vulgare cDNA clone HV01P18
5-PRIME, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 560 ttcttcctcctcctcctcctcctc 583
>gb|BQ658353.1|BQ658353 HB09H23w BC Hordeum vulgare subsp. vulgare cDNA clone HB09H23
3-PRIME, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 231 ctcttcttcctcctcctcttcctcctca 258
>gb|BQ662291.1|BQ662291 HS01J06w HS Hordeum vulgare subsp. vulgare cDNA clone HS01J06
3-PRIME, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 519 tcctcctcctccccctcctc 538
>gb|BI777702.2|BI777702 EBro08_SQ001_I03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_I03 5', mRNA sequence
Length = 426
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 181 tcttcttcctcctcctcccc 200
>gb|BQ753503.1|BQ753503 EBan01_SQ004_H06_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_H06 5', mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 25 tcttcttcctcctcctcccc 44
>gb|BQ754641.1|BQ754641 EBed01_SQ003_G08_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_G08 5', mRNA sequence
Length = 384
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 115 tcttcttcctcctcctcccc 134
>gb|BQ760044.1|BQ760044 EBpi07_SQ003_D05_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_D05 5', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 119 tcttcttcctcctcctcccc 138
>gb|BU995137.1|BU995137 HM09F03r HM Hordeum vulgare subsp. vulgare cDNA clone HM09F03
5-PRIME, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 57 tcttcttcctcctcctcccc 76
>gb|BU995922.1|BU995922 HM11M15r HM Hordeum vulgare subsp. vulgare cDNA clone HM11M15
5-PRIME, mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctcccc 138
||||||||||||||||||||
Sbjct: 17 tcttcttcctcctcctcccc 36
>gb|CA011413.1|CA011413 HT05K04u HT Hordeum vulgare subsp. vulgare cDNA clone HT05K04
3-PRIME, mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 264 ctcttcttcctcctcctcttcctcctca 291
>gb|CA016959.1|CA016959 HV05I03u HV Hordeum vulgare subsp. vulgare cDNA clone HV05I03
3-PRIME, mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctca 145
|||||||||||||||||| ||||||||
Sbjct: 326 ctcttcttcctcctcctcttcctcctca 353
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,438
Number of Sequences: 312970
Number of extensions: 144438
Number of successful extensions: 50309
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 50148
Number of HSP's gapped (non-prelim): 142
length of query: 1061
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1042
effective length of database: 169,188,109
effective search space: 176294009578
effective search space used: 176294009578
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)