BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478398.2.5
(1385 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA li... 565 e-159
gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedl... 525 e-147
gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa... 458 e-127
gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. v... 422 e-116
gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm librar... 383 e-104
gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-a... 369 e-100
gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. v... 365 3e-099
gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA li... 345 2e-093
gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm libra... 293 8e-078
gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedl... 285 2e-075
gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare su... 272 3e-071
gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA li... 268 5e-070
gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA li... 268 5e-070
gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. v... 244 7e-063
gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedl... 230 1e-058
gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa... 222 2e-056
gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 ... 212 2e-053
gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day ger... 212 2e-053
gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. v... 206 1e-051
gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. v... 194 5e-048
gb|BM377223.2|BM377223 EBem05_SQ004_H19_R embryo, 14 DPA, n... 194 5e-048
gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. v... 194 5e-048
gb|BJ456143.1|BJ456143 BJ456143 K. Sato unpublished cDNA li... 131 7e-029
gb|BU983341.1|BU983341 HA29G12r HA Hordeum vulgare subsp. v... 131 7e-029
gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. v... 109 2e-022
gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. v... 105 4e-021
gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. v... 103 2e-020
gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. v... 103 2e-020
gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. v... 100 2e-019
gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. v... 98 9e-019
gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. v... 98 9e-019
gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. v... 98 9e-019
gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. v... 98 9e-019
gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. v... 98 9e-019
gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. v... 98 9e-019
gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. v... 98 9e-019
gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. v... 98 9e-019
gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. v... 98 9e-019
gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. v... 98 9e-019
gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. v... 98 9e-019
gb|CA026092.1|CA026092 HZ54G07r HZ Hordeum vulgare subsp. v... 88 9e-016
gb|BQ465058.1|BQ465058 HU02I12r HU Hordeum vulgare subsp. v... 80 2e-013
gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedl... 68 8e-010
gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike... 62 5e-008
gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no... 62 5e-008
gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. v... 62 5e-008
gb|BQ464988.1|BQ464988 HU02F10r HU Hordeum vulgare subsp. v... 48 8e-004
gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedl... 46 0.003
gb|CV061534.1|CV061534 BNEL6A6 Barley EST endosperm library... 40 0.19
gb|CV064131.1|CV064131 BNEL98d2 Barley EST endosperm librar... 40 0.19
>gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8d05 5', mRNA sequence
Length = 623
Score = 565 bits (285), Expect = e-159
Identities = 435/485 (89%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 136 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 195
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 196 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 255
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 256 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 315
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 316 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgagtct 375
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||||
Sbjct: 376 tcccatggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatg 435
Query: 633 ctttatgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctg 692
| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 436 ttgtatgggctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctg 495
Query: 693 gagaagtataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaacca 752
||||| || |||||||| |||||||| || || || |||||||| |||||||| ||||||
Sbjct: 496 gagaaatacaagaactacgactttggacgatgtccacgtgtttattgctgtggacaacca 555
Query: 753 tgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgcccc 812
||||| ||| ||||||||||||| || || ||||||||||| |||||||||||||| ||
Sbjct: 556 tgcctaccaattggacaatcagatattcaccgatctagtacagtgaagatatactgtcct 615
Query: 813 aagtg 817
|||||
Sbjct: 616 aagtg 620
>gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G21f, mRNA sequence
Length = 768
Score = 525 bits (265), Expect = e-147
Identities = 412/461 (89%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 210 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 269
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 270 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 329
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 330 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 389
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 390 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgagtct 449
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||||
Sbjct: 450 tcccatggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatg 509
Query: 633 ctttatgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctg 692
| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 510 ttgtatgggctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctg 569
Query: 693 gagaagtataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaacca 752
||||| || |||||||| |||||||| || || || |||||||| |||||||| ||||
Sbjct: 570 gagaaatacaagaactacgactttggacgatgtccacgtgtttattgctgtgggacacca 629
Query: 753 tgcctgccagttggacaatcagacatccatcgatctagtac 793
||||| ||| ||||||||||||| || || |||||||||||
Sbjct: 630 tgcctaccaattggacaatcagatattcaccgatctagtac 670
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 87 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 146
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 147 ccctccacgtcgag 160
>gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007M10f, mRNA sequence
Length = 664
Score = 458 bits (231), Expect = e-127
Identities = 331/365 (90%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 297 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 356
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 357 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 416
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 417 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 476
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 477 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgagtct 536
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||| ||||| || ||||| |||||||| | ||||||||||| ||||||
Sbjct: 537 tcccatggtgatattttcacagaagaacanaatgagctagtggaatcagctgctgagatg 596
Query: 633 ctttatgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctg 692
| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 597 ttgtatgggctgatncatgcacgatacattctgaccagtaaagggttggctgctatgctg 656
Query: 693 gagaa 697
|||||
Sbjct: 657 gagaa 661
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 174 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 233
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 234 ccctccacgtcgag 247
>gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. vulgare cDNA clone HS06E04
5-PRIME, mRNA sequence
Length = 628
Score = 422 bits (213), Expect = e-116
Identities = 303/333 (90%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 296 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 355
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 356 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 415
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 416 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 475
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 476 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgagtct 535
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||||
Sbjct: 536 tcccatggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatg 595
Query: 633 ctttatgggctgatccatgcacgatacattctg 665
| ||||||||||| ||||||||||||||||||
Sbjct: 596 ttgtatgggctgattcatgcacgatacattctg 628
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 173 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 232
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 233 ccctccacgtcgag 246
>gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79g9 5' similar to possible
protein kinase CK2 regulatory subunit, mRNA sequence
Length = 700
Score = 383 bits (193), Expect = e-104
Identities = 354/408 (86%)
Strand = Plus / Minus
Query: 579 ggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatgctttat 638
|||||||| ||||| || |||||||||||||| | |||||| |||| |||||| | |||
Sbjct: 700 ggtgatattttcacagaagaacaaaatgagctagtggaatcacctgctgagatgttgtat 641
Query: 639 gggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctggagaag 698
|| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 640 ggnctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctggagaaa 581
Query: 699 tataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctg 758
|| |||||||| |||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 580 tacaagaactacgactttggacgatgtccacgtgtttattgctgtggacaaccatgccta 521
Query: 759 ccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgccccaagtgt 818
||| ||||||||||||| || || ||||||||||| |||||||||||||| || |||||
Sbjct: 520 ccaattggacaatcagatattcaccgatctagtacagtgaagatatactgtcctaagtgc 461
Query: 819 gaagacatctactacccacggtccaagtaccaaggcaacatcgacggcgcatactttggg 878
|||||||||||||| ||||| || || ||||||||||| || ||||| || |||| ||||
Sbjct: 460 gaagacatctactatccacgttctaaataccaaggcaatattgacggagcctactatggg 401
Query: 879 acaacgttccctcatctgttcctgatgacatacgagcacctcaagccacagaagctctcg 938
||||| || ||||| || || |||||||| ||||| ||||||||||| || ||| ||||
Sbjct: 400 acaacatttcctcacctttttctgatgacgtacgatcacctcaagccccaaaagacctcg 341
Query: 939 cagcgctatgttcctcgtgtctttggcttcaagctccacaagccatga 986
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 cagcgctatgttcctcgtgtatttggcttcaagctccacaagccatga 293
>gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004I13f, mRNA sequence
Length = 554
Score = 369 bits (186), Expect = e-100
Identities = 303/342 (88%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 182 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 241
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 242 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 301
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 302 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 361
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct: 362 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgaggct 421
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||| ||||| || |||||||||||| | |||| |||| || ||
Sbjct: 422 tcccatggtgatattttcacagaaagacaaaatgagctaatgggatcaactgctgaaatt 481
Query: 633 ctttatgggctgatccatgcacgatacattctgaccagtaaa 674
| |||||||||| |||||||||||||||||||||||||||
Sbjct: 482 gtggatgggctgattcatgcacgatacattctgaccagtaaa 523
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 59 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 118
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 119 ccctccacgtcgag 132
>gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40K23
5-PRIME, mRNA sequence
Length = 567
Score = 365 bits (184), Expect = 3e-099
Identities = 253/276 (91%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 292 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 351
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 352 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 411
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 412 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 471
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 472 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgagtct 531
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgag 608
|| ||||||||||| ||||| || ||||||||||||
Sbjct: 532 tcccatggtgatattttcacagaagaacaaaatgag 567
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 169 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 228
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 229 ccctccacgtcgag 242
>gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3h20 3', mRNA sequence
Length = 607
Score = 345 bits (174), Expect = 2e-093
Identities = 323/372 (86%), Gaps = 3/372 (0%)
Strand = Plus / Minus
Query: 615 gaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaa 674
||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct: 604 gaatcagctgctgagatgttgtatgggctgattcatgcacgatacattctgaccagtaaa 545
Query: 675 ggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtt 734
|| ||||||| ||||||||||| || |||||||| |||||||| || || || ||||||
Sbjct: 544 gggttggctgctatgctggagaaatacaagaactacgactttggacgatgtccacgtgtt 485
Query: 735 tactgctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtacc 794
|| |||||||| ||||||||||| ||| ||||||||||||| || || |||||||||||
Sbjct: 484 tattgctgtggacaaccatgcctaccaattggacaatcagatattcaccgatctagtaca 425
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||||||||| || ||||| |||||||||||||| ||||| || || |||||||
Sbjct: 424 gtgaagatatactgtcctaagtgcgaagacatctactatccacgttctaaataccaag-- 367
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgag 914
| || ||||| || |||| ||||||||| || ||||| || || |||||||| |||||
Sbjct: 366 -atattgacggagcctactatgggacaacatttcctcacctttttctgatgacgtacgat 308
Query: 915 cacctcaagccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctc 974
||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 cacctcaagccccaaaagacctcgcagcgctatgttcctcgtgtatttggcttcaagctc 248
Query: 975 cacaagccatga 986
||||||||||||
Sbjct: 247 cacaagccatga 236
>gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL109a5 5' similar to
OJ1058_B11.17, mRNA sequence
Length = 602
Score = 293 bits (148), Expect = 8e-078
Identities = 268/308 (87%)
Strand = Plus / Minus
Query: 679 tggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttact 738
||||||| ||||||||||| || |||||||| |||||||| || || || |||||||| |
Sbjct: 600 tggctgctatgctggagaaatacaagaactacgactttggacgatgtccacgtgtttatt 541
Query: 739 gctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtga 798
||||||| ||||||||||| ||| ||||||||||||| || || ||||||||||| ||||
Sbjct: 540 gctgtggacaaccatgcctaccaattggacaatcagatattcaccgatctagtacagtga 481
Query: 799 agatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaaca 858
|||||||||| || ||||| |||||||||||||| ||||| || || ||||||||||| |
Sbjct: 480 agatatactgtcctaagtgcgaagacatctactatccacgttctaaataccaaggcaata 421
Query: 859 tcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacc 918
| ||||| || |||| ||||||||| || ||||| || || |||||||| ||||| ||||
Sbjct: 420 ttgacggagcctactatgggacaacatttcctcacctttttctgatgacgtacgatcacc 361
Query: 919 tcaagccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccaca 978
||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 360 tcaagccccaaaagacctcgcagcgctatgttcctcgtgtatttggcttcaagctccaca 301
Query: 979 agccatga 986
||||||||
Sbjct: 300 agccatga 293
>gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007H14f, mRNA sequence
Length = 500
Score = 285 bits (144), Expect = 2e-075
Identities = 189/204 (92%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 297 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 356
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 357 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 416
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 417 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtggg 476
Query: 513 ctcagcagccaagttccttattat 536
|| ||||| |||||||| ||||||
Sbjct: 477 cttagcagtcaagttccatattat 500
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 174 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 233
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 234 ccctccacgtcgag 247
>gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02D10_T3.ab1 similar to Protein kinase,, mRNA sequence
Length = 848
Score = 272 bits (137), Expect = 3e-071
Identities = 242/277 (87%)
Strand = Plus / Plus
Query: 579 ggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatgctttat 638
|||||||| ||||| || |||||||||||||| | ||||||||||| |||||| | |||
Sbjct: 289 ggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatgttgtat 348
Query: 639 gggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctggagaag 698
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 349 gggctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctggagaaa 408
Query: 699 tataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctg 758
|| |||||||| |||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 409 tacaagaactacgactttggacgatgtccacgtgtttattgctgtggacaaccatgccta 468
Query: 759 ccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgccccaagtgt 818
||| ||||||||||||| || || ||||||||||| |||||||||||||| || |||||
Sbjct: 469 ccaattggacaatcagatattcaccgatctagtacagtgaagatatactgtcctaagtgc 528
Query: 819 gaagacatctactacccacggtccaagtaccaaggca 855
|||||||||||||| ||||| || || ||||||||||
Sbjct: 529 gaagacatctactatccacgttctaaataccaaggca 565
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 139 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 198
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 199 ccctccacgtcgag 212
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaagg 361
|||||||||||||||||||||||||||||
Sbjct: 262 tccatccccaagggccgctgctccgaagg 290
>gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3h20 5', mRNA sequence
Length = 492
Score = 268 bits (135), Expect = 5e-070
Identities = 168/179 (93%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 310 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 369
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 370 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 429
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtgg 511
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 430 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtgg 488
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 187 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 246
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 247 ccctccacgtcgag 260
>gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal0a11 5', mRNA sequence
Length = 483
Score = 268 bits (135), Expect = 5e-070
Identities = 168/179 (93%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 300 tccatccccaagggccgctgctccgaaggggagtcagagtcggacagtgaagcatcagat 359
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 360 gttggtggctctgatggagaagatacctcatggatttcatggtattgcaacctaagaggg 419
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtgg 511
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 420 aatgagttcttctgtgaagtcgatgatgattacattcaagatgacttcaatctttgtgg 478
Score = 67.9 bits (34), Expect = 8e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| |||||||||| ||| |||
Sbjct: 177 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaggcggccgcgtcg 236
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 237 ccctccacgtcgag 250
>gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C15
5-PRIME, mRNA sequence
Length = 700
Score = 244 bits (123), Expect = 7e-063
Identities = 432/535 (80%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| |||||| | ||||| |||||||||||||| || |||||||||||||
Sbjct: 29 ctgacagtgaagaatcagacctgagtggttctgatggagaagatacatcgtggatttcat 88
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 89 ggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacgattacatacaag 148
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
|||| ||||| || ||||| || ||| | |||||||| |||||||| |||||||| || |
Sbjct: 149 acgatttcaatctctgtgggctaagcggtcaagttccatattatgaatatgctcttgacc 208
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
| || || ||| | || || || ||||||||||||||||| || || || ||||| ||
Sbjct: 209 ttatattggatgtcgagtcttcacatggtgatatgttcacagaagagcagaatgaactta 268
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagta 672
|||||||||||||||||||||||||| |||| |||| ||||| ||||| || ||||
Sbjct: 269 ttgaatcagctgcagagatgctttatggattgattcatgttcgatatattctaacaagta 328
Query: 673 aaggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtg 732
|||| ||||||||||| |||| || || ||||||||||||||||| | || || | |
Sbjct: 329 aagggttggctgcaatgttggataaatacaagaactatgactttggcagatgtccaagag 388
Query: 733 tttactgctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagta 792
| |||| | || ||||||||||| |||||||| || || ||||| | ||| |||||||
Sbjct: 389 tgcactgtagcggccaaccatgccttccagttggccagtcggacattcctcgttctagta 448
Query: 793 ccgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaag 852
||||| || |||||||| ||||||||||| ||||||| || | ||||| || |||
Sbjct: 449 atgtgaaaatttactgcccaaagtgtgaagatctctactatccgagatccaaatatcaaa 508
Query: 853 gcaacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
||||||| ||||| || ||||||||||||||||| ||||| |||| ||||||||
Sbjct: 509 gcaacattgacggggcgtactttgggacaacgtttcctcacttgtttctgatgac 563
>gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G19f, mRNA sequence
Length = 771
Score = 230 bits (116), Expect = 1e-058
Identities = 299/356 (83%), Gaps = 3/356 (0%)
Strand = Plus / Plus
Query: 341 caagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagatgttagtgg 400
||||||||| |||| |||||||||||| || || || |||||||||| |||||| ||||
Sbjct: 218 caagggccggtgcttcgaaggggagtcagagtcggacagtgaagcatgagatgtcggtgg 277
Query: 401 ctctgatggagaagacacctcgtggatttcatggtattgcaacttaagagggaatgagtt 460
||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||| ||
Sbjct: 278 ctctgatggagaagatacctcatggatttcatgggattgcaacctaagagggaatgactt 337
Query: 461 cttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggcctcagcag 520
||||||||| | || |||||| ||| ||| ||| |||||||| |||| || ||||||||
Sbjct: 338 cttctgtgacgacggtgatgattacgttcgagatgacttcaatgtttgcgggctcagcag 397
Query: 521 ccaagttccttattatgattatgctctcgatctcattttagatattgaatcatctca-tg 579
|||||||| ||||||||||||||||| ||||||||| ||||||| | | || || ||
Sbjct: 398 tcaagttccatattatgattatgctcttgatctcattgtagatatcgcgt-attgcactg 456
Query: 580 gtgatatgttcactgaggaacaaaatgagctcggagaatca-gctgcagagatgctttat 638
||||||| ||||| || |||| |||||||| |||||| ||||| || ||| | |||
Sbjct: 457 gtgatatcttcacagaaaaacacaatgagctactggaatcatgctgctgacatgttgtat 516
Query: 639 gggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctgga 694
|||||||| |||||||||||||||||||||| |||| ||||||| ||||||||
Sbjct: 517 gggctgattcatgcacgatacattctgaccatgtaagggttggctgctatgctgga 572
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| | |||||||| ||||| || ||||||| |||||||||| ||| |||
Sbjct: 87 ctggaccggaagctcatcagcgaagcgctcgatcagcacctggagaaggcggccgcgtcg 146
Query: 255 ccgtccac 262
|| |||||
Sbjct: 147 ccctccac 154
>gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0002K22f, mRNA sequence
Length = 903
Score = 222 bits (112), Expect = 2e-056
Identities = 208/236 (88%), Gaps = 3/236 (1%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagat 392
|||||||||||||||||||||||| |||||||||| || || || |||||||||||||||
Sbjct: 290 tccatccccaagggccgctgctcccaaggggagtcagagtccgacagtgaagcatcagat 349
Query: 393 gttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagaggg 452
||| ||||||||||||||||| | ||||| |||||||||||| |||||| | ||||||||
Sbjct: 350 gttggtggctctgatggagaaaatacctcatggatttcatggaattgcaccctaagaggg 409
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
|||||||||||||||||| || ||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 410 aatgagttcttctgtgaattctatgatgattacattcaagatgacttcaatctttggggg 469
Query: 513 ctcagcagccaa-gttcctta-ttatgatta-tgctctcgatctcattttagatat 565
|| | ||| ||| ||||| || ||||||||| |||||| || ||||||||||||||
Sbjct: 470 cttaccaggcaaggttccatatttatgattattgctcttgacctcattttagatat 525
Score = 52.0 bits (26), Expect = 5e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||| ||| |||| || |||||||| |||||||||| ||| |||
Sbjct: 167 ctggaccggaagcgcatcaccgaaccgctcgataagcacctggagaaggcggccgcgtcg 226
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 227 ccctccacgtcgag 240
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 636 tatgggctgatccatgcacgatacattctgaccagtaaagg 676
||||||||||||||||| | || ||||||| ||||||||||
Sbjct: 599 tatgggctgatccatgcccaatccattctgcccagtaaagg 639
>gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086G10f, mRNA sequence
Length = 849
Score = 212 bits (107), Expect = 2e-053
Identities = 206/239 (86%)
Strand = Plus / Plus
Query: 579 ggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatgctttat 638
|||||||| ||||| || |||||||||||||| | ||||||||||| |||||| | |||
Sbjct: 230 ggtgatattttcacagaagaacaaaatgagctagtggaatcagctgctgagatgttgtat 289
Query: 639 gggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctggagaag 698
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 290 gggctgattcatgcacgatacattctgaccagtaaagggttggctgctatgctggagaaa 349
Query: 699 tataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctg 758
|| |||||||| ||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 350 tacaagaactactactttggacgatgtccacgtgtttattgctgtggacaaccatgccta 409
Query: 759 ccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgccccaagtg 817
||| ||||||||||||| || || ||||||| ||| |||||||| ||||| || |||||
Sbjct: 410 ccaattggacaatcagatattcaccgatctaatacagtgaagatttactgtcctaagtg 468
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| || |||||||| ||||| || |||||||| ||||| |||| ||| |||
Sbjct: 80 ctggaccggaagcgcatcagcgaagcgctcgataagcacctggagaaagcggccgcgtcg 139
Query: 255 ccgtccacatcgag 268
|| ||||| |||||
Sbjct: 140 ccctccacgtcgag 153
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 333 tccatccccaagggccgctgctccgaagg 361
||||||||||| |||||||||||||||||
Sbjct: 203 tccatccccaaaggccgctgctccgaagg 231
>gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_K07 5', mRNA sequence
Length = 574
Score = 212 bits (107), Expect = 2e-053
Identities = 368/455 (80%)
Strand = Plus / Plus
Query: 453 aatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggc 512
|||||||||||||||||||| ||||| || ||||| |||||||| ||||| || |||||
Sbjct: 32 aatgagttcttctgtgaagttgatgacgattacatacaagacgatttcaatctctgtggg 91
Query: 513 ctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaatca 572
|| ||| | |||||||| |||||||| |||||||| || || || || ||| | || ||
Sbjct: 92 ctaagcggtcaagttccatattatgaatatgctcttgaccttatattggatgtcgagtct 151
Query: 573 tctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatg 632
|| ||||||||||||||||| || || || ||||| || ||||||||||||||||||
Sbjct: 152 tcacatggtgatatgttcacagaagagcagaatgaacttattgaatcagctgcagagatg 211
Query: 633 ctttatgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctg 692
|||||||| |||| |||| ||||| ||||| || |||||||| ||||||||||| ||
Sbjct: 212 ctttatggattgattcatgttcgatatattctaacaagtaaagggttggctgcaatgttg 271
Query: 693 gagaagtataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaacca 752
|| || || ||||||||||||||||| | || || | || |||| | || ||||||
Sbjct: 272 gataaatacaagaactatgactttggcagatgtccaagagtgcactgtagcggccaacca 331
Query: 753 tgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgcccc 812
||||| |||||||| || || ||||| | ||| ||||||| ||||| || ||||||||
Sbjct: 332 tgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaatttactgccca 391
Query: 813 aagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggcgcatac 872
||||||||||| ||||||| || | ||||| || ||| ||||||| ||||| || |||
Sbjct: 392 aagtgtgaagatctctactatccgagatccaaatatcaaagcaacattgacggggcgtac 451
Query: 873 tttgggacaacgttccctcatctgttcctgatgac 907
|||||||||||||| ||||| |||| ||||||||
Sbjct: 452 tttgggacaacgtttcctcacttgtttctgatgac 486
>gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB21C19
5-PRIME, mRNA sequence
Length = 526
Score = 206 bits (104), Expect = 1e-051
Identities = 371/460 (80%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| |||||| | ||||| |||||||||||||| || |||||||||||||
Sbjct: 38 ctgacagtgaagaatcagacctgagtggttctgatggagaagatacatcgtggatttcat 97
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 98 ggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacgattacatacaag 157
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
|||| ||||| || ||||| || ||| | |||||||| |||||||| |||||||| || |
Sbjct: 158 acgatttcaatctctgtgggctaagcggtcaagttccatattatgaatatgctcttgacc 217
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
| || || ||| | || || || ||||||||||||||||| || || || ||||| ||
Sbjct: 218 ttatattggatgtcgagtcttcacatggtgatatgttcacagaagagcagaatgaactta 277
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagta 672
|||||||||||||||||||||||||| |||| |||| ||||| ||||| || ||||
Sbjct: 278 ttgaatcagctgcagagatgctttatggattgattcatgttcgatatattctaacaagta 337
Query: 673 aaggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtg 732
|||| ||||||||||| |||| || || ||||||||||||||||| | || || | |
Sbjct: 338 aagggttggctgcaatgttggataaatacaagaactatgactttggcagatgtccaagag 397
Query: 733 tttactgctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagta 792
| |||| | || ||||||||||| |||||||| || || ||||| | ||| |||||||
Sbjct: 398 tgcactgtagcggccaaccatgccttccagttggccagtcggacattcctcgttctagta 457
Query: 793 ccgtgaagatatactgccccaagtgtgaagacatctacta 832
||||| || |||||||| ||||||||||| |||||||
Sbjct: 458 atgtgaaaatttactgcccaaagtgtgaagatctctacta 497
>gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. vulgare cDNA clone HU03A07
5-PRIME, mRNA sequence
Length = 552
Score = 194 bits (98), Expect = 5e-048
Identities = 284/346 (82%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| |||||| | ||||| |||||||||||||| || |||||||||||||
Sbjct: 162 ctgacagtgaagaatcagacctgagtggttctgatggagaagatacatcgtggatttcat 221
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 222 ggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacgattacatacaag 281
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
|||| ||||| || ||||| || ||| | |||||||| |||||||| |||||||| || |
Sbjct: 282 acgatttcaatctctgtgggctaagcggtcaagttccatattatgaatatgctcttgacc 341
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
| || || ||| | || || || ||||||||||||||||| || || || ||||| ||
Sbjct: 342 ttatattggatgtcgagtcttcacatggtgatatgttcacagaagagcagaatgaactta 401
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagta 672
|||||||||||||||||||||||||| |||| |||| ||||| ||||| || ||||
Sbjct: 402 ttgaatcagctgcagagatgctttatggattgattcatgttcgatatattctaacaagta 461
Query: 673 aaggactggctgcaatgctggagaagtataagaactatgactttgg 718
|||| ||||||||||| |||| || || |||||||||||||||||
Sbjct: 462 aagggttggctgcaatgttggataaatacaagaactatgactttgg 507
>gb|BM377223.2|BM377223 EBem05_SQ004_H19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_H19 5', mRNA sequence
Length = 538
Score = 194 bits (98), Expect = 5e-048
Identities = 232/276 (84%), Gaps = 3/276 (1%)
Strand = Plus / Minus
Query: 711 gactttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctgccagttggacaa 770
|||||||| || || || |||||||| |||||||| ||||||||||| ||| ||||||||
Sbjct: 534 gactttggacgatgtccacgtgtttattgctgtggacaaccatgcctaccaattggacaa 475
Query: 771 tcagacatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctac 830
||||| || || ||||||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct: 474 tcagatattcaccgatctagtacagtgaagatatactgtcctaagtgcgaagacatctac 415
Query: 831 tacccacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccct 890
|| ||||| | || ||||||| | || ||||| || |||| ||||||||| || |||
Sbjct: 414 tatccacgttttaaataccaag---atattgacggagcctactatgggacaacatttcct 358
Query: 891 catctgttcctgatgacatacgagcacctcaagccacagaagctctcgcagcgctatgtt 950
|| || || ||||||| ||||| | ||||||||| || ||| ||||||||| ||||||
Sbjct: 357 cacctttttttgatgacgtacgatcccctcaagccccaaaagacctcgcagcggtatgtt 298
Query: 951 cctcgtgtctttggcttcaagctccacaagccatga 986
|||||||| |||||||||||||||| ||||||||||
Sbjct: 297 cctcgtgtatttggcttcaagctccccaagccatga 262
>gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
5-PRIME, mRNA sequence
Length = 649
Score = 194 bits (98), Expect = 5e-048
Identities = 284/346 (82%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| |||||| | ||||| |||||||||||||| || |||||||||||||
Sbjct: 216 ctgacagtgaagaatcagacctgagtggttctgatggagaagatacatcgtggatttcat 275
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| | || |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 276 ggttctgtagcttgcggggcaatgagttcttctgtgaagttgatgacgattacatacaag 335
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
|||| ||||| || ||||| || ||| | |||||||| |||||||| |||||||| || |
Sbjct: 336 acgatttcaatctctgtgggctaagcggtcaagttccatattatgaatatgctcttgacc 395
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
| || || ||| | || || || ||||||||||||||||| || || || ||||| ||
Sbjct: 396 ttatattggatgtcgagtcttcacatggtgatatgttcacagaagagcagaatgaactta 455
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagta 672
|||||||||||||||||||||||||| |||| |||| ||||| ||||| || ||||
Sbjct: 456 ttgaatcagctgcagagatgctttatggattgattcatgttcgatatattctaacaagta 515
Query: 673 aaggactggctgcaatgctggagaagtataagaactatgactttgg 718
|||| ||||||||||| |||| || || |||||||||||||||||
Sbjct: 516 aagggttggctgcaatgttggataaatacaagaactatgactttgg 561
>gb|BJ456143.1|BJ456143 BJ456143 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19o11 3', mRNA sequence
Length = 329
Score = 131 bits (66), Expect = 7e-029
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 862 acggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctca 921
|||| || |||| ||||||||| || ||||| || || |||||||| ||||| |||||||
Sbjct: 282 acggagcntactatgggacaacatttcctcacctttttctgatgacgtacgatcacctca 223
Query: 922 agccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
|||| || ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 222 agccccaaaagacctcgcagcgctatgttcctcgtgtatttggcttcaagctccacaagc 163
Query: 982 catga 986
|||||
Sbjct: 162 catga 158
>gb|BU983341.1|BU983341 HA29G12r HA Hordeum vulgare subsp. vulgare cDNA clone HA29G12
5-PRIME, mRNA sequence
Length = 452
Score = 131 bits (66), Expect = 7e-029
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 861 gacggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctc 920
||||| || |||| ||||||||| || ||||| || || |||||||| ||||| ||||||
Sbjct: 42 gacggagcctactatgggacaacatttcctcacctttttctgatgacgtacgatcacctc 101
Query: 921 aagccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaag 980
||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 102 aagccccaaaagacctcgcagcgctatgttcctcgtgtatttggcttcaagctccacaag 161
Query: 981 ccatga 986
||||||
Sbjct: 162 ccatga 167
>gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. vulgare cDNA clone HF25K21
5-PRIME, mRNA sequence
Length = 674
Score = 109 bits (55), Expect = 2e-022
Identities = 379/487 (77%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 180 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 239
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 240 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 299
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 300 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 359
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 360 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 419
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagta 672
|| ||| ||||||||||||| ||||| | ||||||||||| ||||| | || || |
Sbjct: 420 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacatcttaactagca 479
Query: 673 aaggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtg 732
| || || ||||||||| | || |||| ||||| ||||| ||||| | ||||| || |
Sbjct: 480 agggtctagctgcaatgttagaaaagttcaagaattatgattttggcagatgccctcgag 539
Query: 733 tttactgctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagta 792
| ||||||||||| || || || || |||| || ||||||||||| | | | || || |
Sbjct: 540 tatactgctgtggccagccctgtcttccagcagggcaatcagacattcctaggtcaagca 599
Query: 793 ccgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaag 852
| |||||| | | || || || ||||||||| | |||| ||| |||||||||||||||
Sbjct: 600 cagtgaaggtgttttgtccaaaatgtgaagacttacactatccaaggtccaagtaccaag 659
Query: 853 gcaacat 859
|||||||
Sbjct: 660 gcaacat 666
>gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
3-PRIME, mRNA sequence
Length = 616
Score = 105 bits (53), Expect = 4e-021
Identities = 283/360 (78%)
Strand = Plus / Minus
Query: 622 ctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactgg 681
||||||||||||| ||||| | ||||||||||| ||||| | || || || || || |
Sbjct: 573 ctgcagagatgctgtatggtntaatccatgcacggtacatcttaactagcaagggtctag 514
Query: 682 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgct 741
|||||||| | || |||| ||||| ||||| ||||| | ||||| || || |||||||
Sbjct: 513 ctgcaatgttagaaaagttcaagaattatgattttggcagatgccctcgagtatactgct 454
Query: 742 gtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaaga 801
|||| || || || || |||| || ||||||||||| | | | || || || ||||||
Sbjct: 453 gtggccagccctgtcttccagcagggcaatcagacattcctaggtcaagcacagtgaagg 394
Query: 802 tatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcg 861
| | || || || ||||||||| | |||| ||| |||||||||||||||||||||| |
Sbjct: 393 tgttttgtccaaaatgtgaagacttacactatccaaggtccaagtaccaaggcaacattg 334
Query: 862 acggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctca 921
| || ||||||||||| || |||||||||||||| ||| |||||||||| ||||| |
Sbjct: 333 atggagcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctga 274
Query: 922 agccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
|||||||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 273 agccacagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 214
>gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
3-PRIME, mRNA sequence
Length = 588
Score = 103 bits (52), Expect = 2e-020
Identities = 283/360 (78%)
Strand = Plus / Minus
Query: 622 ctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactgg 681
||||||||||||| ||||| | ||||||||||| ||||| | || || || || || |
Sbjct: 572 ctgcagagatgctgtatggtttaatccatgcacggtacatcttaactagcaagggtctag 513
Query: 682 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgct 741
|||||||| | || |||| ||||| ||||| ||||| | ||||| || || |||||||
Sbjct: 512 ctgcaatgttagaaaagttcaagaattatgattttggcagatgccctcgagtatactgct 453
Query: 742 gtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaaga 801
|||| || || || || |||| || ||||||||||| | | | || || || ||||||
Sbjct: 452 gtggccagccctgtcttccagcagggcaatcagacattcctaggtcaagcacagtgaagg 393
Query: 802 tatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcg 861
| | || || || ||||||||| | |||| ||| |||||||||||||||||||||| |
Sbjct: 392 tgttttgtccaaaatgtgaagacttacactatccaaggtccaagtaccaaggcaacattg 333
Query: 862 acggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctca 921
| || ||||||||||| || |||||||||||||| ||| |||||||||| ||||| |
Sbjct: 332 atggagcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctga 273
Query: 922 agccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
|||||||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 272 agccacagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 213
>gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
3-PRIME, mRNA sequence
Length = 596
Score = 103 bits (52), Expect = 2e-020
Identities = 283/360 (78%)
Strand = Plus / Minus
Query: 622 ctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactgg 681
||||||||||||| ||||| | ||||||||||| ||||| | || || || || || |
Sbjct: 573 ctgcagagatgctgtatggtttaatccatgcacggtacatcttaactagcaagggtctag 514
Query: 682 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgct 741
|||||||| | || |||| ||||| ||||| ||||| | ||||| || || |||||||
Sbjct: 513 ctgcaatgttagaaaagttcaagaattatgattttggcagatgccctcgagtatactgct 454
Query: 742 gtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaaga 801
|||| || || || || |||| || ||||||||||| | | | || || || ||||||
Sbjct: 453 gtggccagccctgtcttccagcagggcaatcagacattcctaggtcaagcacagtgaagg 394
Query: 802 tatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcg 861
| | || || || ||||||||| | |||| ||| |||||||||||||||||||||| |
Sbjct: 393 tgttttgtccaaaatgtgaagacttacactatccaaggtccaagtaccaaggcaacattg 334
Query: 862 acggcgcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctca 921
| || ||||||||||| || |||||||||||||| ||| |||||||||| ||||| |
Sbjct: 333 atggagcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctga 274
Query: 922 agccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
|||||||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 273 agccacagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 214
>gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. vulgare cDNA clone HS04G18
3-PRIME, mRNA sequence
Length = 435
Score = 99.6 bits (50), Expect = 2e-019
Identities = 137/166 (82%)
Strand = Plus / Minus
Query: 816 tgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggcgcatacttt 875
||||||||| | |||| ||| |||||||||||||||||||||| || || |||||||||
Sbjct: 378 tgtgaagacttacactatccaaggtccaagtaccaaggcaacattgatggagcatacttt 319
Query: 876 gggacaacgttccctcatctgttcctgatgacatacgagcacctcaagccacagaagctc 935
|| || |||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct: 318 ggtacgacgttccctcatctcttcttgatgacatatccacacctgaagccacagaagcca 259
Query: 936 tcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
|| |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 258 tcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 213
>gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
5-PRIME, mRNA sequence
Length = 597
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 240 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 299
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 300 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 359
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 360 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 419
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 420 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 479
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 480 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 528
>gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
5-PRIME, mRNA sequence
Length = 574
Score = 97.6 bits (49), Expect = 9e-019
Identities = 133/161 (82%)
Strand = Plus / Plus
Query: 747 caaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatac 806
||||||||||| |||||||| || || ||||| | ||| ||||||| ||||| || |||
Sbjct: 31 caaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaatttac 90
Query: 807 tgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggc 866
||||| ||||||||||| ||||||| || | ||||| || ||| ||||||| |||||
Sbjct: 91 tgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacattgacggg 150
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgac 907
|| ||||||||||||||||| ||||| |||| ||||||||
Sbjct: 151 gcgtactttgggacaacgtttcctcacttgtttctgatgac 191
>gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. vulgare cDNA clone HS02D11
5-PRIME, mRNA sequence
Length = 538
Score = 97.6 bits (49), Expect = 9e-019
Identities = 133/161 (82%)
Strand = Plus / Plus
Query: 747 caaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatac 806
||||||||||| |||||||| || || ||||| | ||| ||||||| ||||| || |||
Sbjct: 31 caaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaatttac 90
Query: 807 tgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggc 866
||||| ||||||||||| ||||||| || | ||||| || ||| ||||||| |||||
Sbjct: 91 tgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacattgacggg 150
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgac 907
|| ||||||||||||||||| ||||| |||| ||||||||
Sbjct: 151 gcgtactttgggacaacgtttcctcacttgtttctgatgac 191
>gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
5-PRIME, mRNA sequence
Length = 659
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 351 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 410
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 411 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 470
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 471 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 530
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 531 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 590
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 591 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 639
>gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. vulgare cDNA clone HX02G12
5-PRIME, mRNA sequence
Length = 652
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 297 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 356
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 357 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 416
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 417 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 476
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 477 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 536
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 537 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 585
>gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
3-PRIME, mRNA sequence
Length = 650
Score = 97.6 bits (49), Expect = 9e-019
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 747 caaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatac 806
||||||||||| |||||||| || || ||||| | ||| ||||||| ||||| || |||
Sbjct: 631 caaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaatttac 572
Query: 807 tgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggc 866
||||| ||||||||||| ||||||| || | ||||| || ||| ||||||| |||||
Sbjct: 571 tgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacattgacggg 512
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgac 907
|| ||||||||||||||||| ||||| |||| ||||||||
Sbjct: 511 gcgtactttgggacaacgtttcctcacttgtttctgatgac 471
>gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F24
5-PRIME, mRNA sequence
Length = 486
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 181 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 240
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 241 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 300
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 301 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 360
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 361 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 420
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 421 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 469
>gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
5-PRIME, mRNA sequence
Length = 587
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 297 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 356
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 357 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 416
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 417 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 476
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 477 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 536
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 537 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 585
>gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P10
5-PRIME, mRNA sequence
Length = 561
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 241 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 300
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 301 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 360
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 361 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 420
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 421 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 480
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 481 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 529
>gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
3-PRIME, mRNA sequence
Length = 543
Score = 97.6 bits (49), Expect = 9e-019
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 747 caaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatac 806
||||||||||| |||||||| || || ||||| | ||| ||||||| ||||| || |||
Sbjct: 513 caaccatgccttccagttggccagtcggacattcctcgttctagtaatgtgaaaatttac 454
Query: 807 tgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggc 866
||||| ||||||||||| ||||||| || | ||||| || ||| ||||||| |||||
Sbjct: 453 tgcccaaagtgtgaagatctctactatccgagatccaaatatcaaagcaacattgacggg 394
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgac 907
|| ||||||||||||||||| ||||| |||| ||||||||
Sbjct: 393 gcgtactttgggacaacgtttcctcacttgtttctgatgac 353
>gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. vulgare cDNA clone HX14A06
5-PRIME, mRNA sequence
Length = 633
Score = 97.6 bits (49), Expect = 9e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 318 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 377
Query: 433 ggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaag 492
||| || | ||| |||| || || ||||||||||| | |||||||| || || || |
Sbjct: 378 ggttctgtagcttgcgaggcaacgaattcttctgtgagattgatgatgattatatacagg 437
Query: 493 acgacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatc 552
| || ||||| || |||||||| |||| || || || |||||||||||||| || ||||
Sbjct: 438 atgatttcaatctctgtggcctaagcaatcaggtgccatattatgattatgcacttgatc 497
Query: 553 tcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcg 612
|||| |||| ||||| || ||| |||||||| | ||||||||||| |||||||| |
Sbjct: 498 tcatcctagacattgagtcttctaatggtgatgtattcactgaggagcaaaatgaattaa 557
Query: 613 gagaatcagctgcagagatgctttatgggctgatccatgcacgatacat 661
|| ||| ||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 558 ttgagtcatctgcagagatgctgtatggtttaatccatgcacggtacat 606
>gb|CA026092.1|CA026092 HZ54G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ54G07
5-PRIME, mRNA sequence
Length = 410
Score = 87.7 bits (44), Expect = 9e-016
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 838 ggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccctcatctgt 897
|||||||||||||||||||||| || || ||||||||||| || |||||||||||||| |
Sbjct: 5 ggtccaagtaccaaggcaacattgatggagcatactttggtacgacgttccctcatctct 64
Query: 898 tcctgatgacatacgagcacctcaagccacagaagc 933
|| ||||||||| ||||| |||||||||||||
Sbjct: 65 tcttgatgacatttttacacctgaagccacagaagc 100
>gb|BQ465058.1|BQ465058 HU02I12r HU Hordeum vulgare subsp. vulgare cDNA clone HU02I12
5-PRIME, mRNA sequence
Length = 659
Score = 79.8 bits (40), Expect = 2e-013
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 789 agtaccgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtac 848
|||||||| |||||||| ||||| || || ||||| ||||||||||| | || ||| ||
Sbjct: 499 agtaccgtcaagatatattgccctaaatgcgaagatctctactacccaagatcgaagcac 558
Query: 849 caaggcaacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
|||| ||| | ||||| |||||||||||||| ||||| |||||| ||||| |||||||
Sbjct: 559 caagccaatacagacggngcatactttgggacgacgtttcctcatatgttcatgatgac 617
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 627 gagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactggctgca 686
||||||||||| || ||||||| || || ||||| |||| | ||| || |||| |||
Sbjct: 337 gagatgctttacggtttgatccacgcccggtacatcttgactactaagggcttggcggca 396
Query: 687 atgctggagaagtataagaactatgactttgggcggtgccc 727
||||||||||||| ||||||| ||||||||| |||||||
Sbjct: 397 atgctggagaagttcaagaactgtgactttggaaggtgccc 437
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 471 gtcgatgatgactacattcaagacgacttcaacctttgtggcctcagc 518
||||| || |||||||| || |||||||||||||| || |||||||||
Sbjct: 181 gtcgacgacgactacatccaggacgacttcaacctctgcggcctcagc 228
>gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016P04f, mRNA sequence
Length = 625
Score = 67.9 bits (34), Expect = 8e-010
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 798 aagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaac 857
|||||||| ||||| || || ||||| ||||||||||| | || ||| |||||| |||
Sbjct: 3 aagatatattgccctaaatgcgaagatctctactacccaagatcgaagcaccaagccaat 62
Query: 858 atcgacggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
| ||||| |||||||||||||| ||||| |||||| ||||| |||||||
Sbjct: 63 acagacggggcatactttgggacgacgtttcctcatatgttcatgatgac 112
>gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021H10f, mRNA sequence
Length = 705
Score = 61.9 bits (31), Expect = 5e-008
Identities = 94/115 (81%)
Strand = Plus / Plus
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctcaagcca 926
||||||||||| || |||||||||||||| ||| |||||||||| ||||| ||||||
Sbjct: 370 gcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctgaagcca 429
Query: 927 cagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 430 cagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 484
>gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_M19 5', mRNA sequence
Length = 339
Score = 61.9 bits (31), Expect = 5e-008
Identities = 94/115 (81%)
Strand = Plus / Plus
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctcaagcca 926
||||||||||| || |||||||||||||| ||| |||||||||| ||||| ||||||
Sbjct: 11 gcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctgaagcca 70
Query: 927 cagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 71 cagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 125
>gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. vulgare cDNA clone HB09C11
3-PRIME, mRNA sequence
Length = 676
Score = 61.9 bits (31), Expect = 5e-008
Identities = 94/115 (81%)
Strand = Plus / Minus
Query: 867 gcatactttgggacaacgttccctcatctgttcctgatgacatacgagcacctcaagcca 926
||||||||||| || |||||||||||||| ||| |||||||||| ||||| ||||||
Sbjct: 328 gcatactttggtacgacgttccctcatctcttcttgatgacatatccacacctgaagcca 269
Query: 927 cagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagctccacaagc 981
||||||| || |||| || ||||| | || ||||||||||| || |||||||
Sbjct: 268 cagaagccatcacagcaatacgttccaagggtttttggcttcaaacttcacaagc 214
>gb|BQ464988.1|BQ464988 HU02F10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02F10
5-PRIME, mRNA sequence
Length = 428
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 679 tggctgcaatgctggagaagtataagaactatgactttgg 718
|||| |||||||||||||||| ||||||| |||||||||
Sbjct: 389 tggcggcaatgctggagaagttcaagaactgtgactttgg 428
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 471 gtcgatgatgactacattcaagacgacttcaacctttgtggcctcagc 518
||||| || |||||||| || |||||||||||||| || |||||||||
Sbjct: 181 gtcgacgacgactacatccaggacgacttcaacctctgcggcctcagc 228
>gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014K08f, mRNA sequence
Length = 782
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 373 ctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcat 432
|||| ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||
Sbjct: 337 ctgacagtgaagattctgatgttagcggttctgaaggagaggacacatcttggatttcat 396
Query: 433 ggt 435
|||
Sbjct: 397 ggt 399
>gb|CV061534.1|CV061534 BNEL6A6 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL6A6 5' similar to Unknown Function, mRNA
sequence
Length = 231
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 196 tggaccggaaacggatcagcgacgcgctagacaagcacct 235
||||||| || || |||| |||||||||||||| ||||||
Sbjct: 128 tggaccgcaagcgcatcaacgacgcgctagacaggcacct 167
>gb|CV064131.1|CV064131 BNEL98d2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98d2 5' similar to Unknown
Function, mRNA sequence
Length = 231
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 196 tggaccggaaacggatcagcgacgcgctagacaagcacct 235
||||||| || || |||| |||||||||||||| ||||||
Sbjct: 128 tggaccgcaagcgcatcaacgacgcgctagacaggcacct 167
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,830
Number of Sequences: 312970
Number of extensions: 153830
Number of successful extensions: 37651
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37478
Number of HSP's gapped (non-prelim): 138
length of query: 1385
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1366
effective length of database: 169,188,109
effective search space: 231110956894
effective search space used: 231110956894
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)