BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 248 2e-064
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 184 3e-045
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 176 7e-043
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 151 4e-035
gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachi... 125 2e-027
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 115 2e-024
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 68 4e-010
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 64 7e-009
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 64 7e-009
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 62 3e-008
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 62 3e-008
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 62 3e-008
gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow st... 62 3e-008
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 62 3e-008
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 54 7e-006
gb|AV917087.1|AV917087 AV917087 K. Sato unpublished cDNA li... 48 4e-004
gb|BM097925.1|BM097925 EBpi03_SQ002_B03_R pistil, 4 DPA, no... 44 0.006
gb|BU973070.1|BU973070 HB23K15r BC Hordeum vulgare subsp. v... 44 0.006
gb|BF259422.2|BF259422 HVSMEf0019B03f Hordeum vulgare seedl... 42 0.025
gb|BG366681.1|BG366681 HVSMEi0007N15f Hordeum vulgare 20 DA... 42 0.025
gb|BG416105.1|BG416105 HVSMEk0009M10f Hordeum vulgare testa... 42 0.025
gb|BI960356.1|BI960356 HVSMEn0024F10f Hordeum vulgare rachi... 42 0.025
gb|AV909277.1|AV909277 AV909277 K. Sato unpublished cDNA li... 42 0.025
gb|AV911163.1|AV911163 AV911163 K. Sato unpublished cDNA li... 42 0.025
gb|AV913814.1|AV913814 AV913814 K. Sato unpublished cDNA li... 42 0.025
gb|AV915174.1|AV915174 AV915174 K. Sato unpublished cDNA li... 42 0.025
gb|AV919176.1|AV919176 AV919176 K. Sato unpublished cDNA li... 42 0.025
gb|AV920296.1|AV920296 AV920296 K. Sato unpublished cDNA li... 42 0.025
gb|AV921426.1|AV921426 AV921426 K. Sato unpublished cDNA li... 42 0.025
gb|AV928187.1|AV928187 AV928187 K. Sato unpublished cDNA li... 42 0.025
gb|AV929618.1|AV929618 AV929618 K. Sato unpublished cDNA li... 42 0.025
gb|BM101479.2|BM101479 EBpi01_SQ003_P15_R pistil, 1 DPA, no... 42 0.025
gb|BQ753516.1|BQ753516 EBan01_SQ004_H19_R anther, yellow st... 42 0.025
gb|BQ762960.1|BQ762960 EBro02_SQ006_N17_R root, 3 week, hyd... 42 0.025
gb|BU971951.1|BU971951 HB20C16r BC Hordeum vulgare subsp. v... 42 0.025
gb|BU976575.1|BU976575 HA03O23r HA Hordeum vulgare subsp. v... 42 0.025
gb|BU981821.1|BU981821 HA24L19r HA Hordeum vulgare subsp. v... 42 0.025
gb|BU994952.1|BU994952 HM08L14r HM Hordeum vulgare subsp. v... 42 0.025
gb|BU995338.1|BU995338 HM09O23r HM Hordeum vulgare subsp. v... 42 0.025
gb|CA000736.1|CA000736 HS07A05u HS Hordeum vulgare subsp. v... 42 0.025
gb|CA021894.1|CA021894 HZ41H12r HZ Hordeum vulgare subsp. v... 42 0.025
gb|CA023690.1|CA023690 HZ47B11r HZ Hordeum vulgare subsp. v... 42 0.025
gb|CA029801.1|CA029801 HX05E03r HX Hordeum vulgare subsp. v... 42 0.025
gb|CA031351.1|CA031351 HX09L08r HX Hordeum vulgare subsp. v... 42 0.025
gb|BJ549181.1|BJ549181 BJ549181 K. Sato unpublished cDNA li... 42 0.025
gb|BJ549965.1|BJ549965 BJ549965 K. Sato unpublished cDNA li... 42 0.025
gb|CB874434.1|CB874434 HX05E03w HX Hordeum vulgare subsp. v... 42 0.025
gb|CB874491.1|CB874491 HX05G21w HX Hordeum vulgare subsp. v... 42 0.025
gb|CB875904.1|CB875904 HX09L08w HX Hordeum vulgare subsp. v... 42 0.025
gb|CB880094.1|CB880094 HM05H14w HM Hordeum vulgare subsp. v... 42 0.025
gb|CB881082.1|CB881082 HM08L14w HM Hordeum vulgare subsp. v... 42 0.025
gb|CV055289.1|CV055289 BNEL118h6 Barley EST endosperm libra... 42 0.025
gb|CV056560.1|CV056560 BNEL19B4 Barley EST endosperm librar... 42 0.025
gb|CV061064.1|CV061064 BNEL64e6 Barley EST endosperm librar... 42 0.025
gb|CV062589.1|CV062589 BNEL80g10 Barley EST endosperm libra... 42 0.025
gb|L32165.1|BLYHSPHAA Hordeum vulgare HSP70 mRNA, complete cds 42 0.025
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 40 0.099
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 40 0.099
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 40 0.099
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 40 0.099
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 40 0.099
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 40 0.099
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 40 0.099
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 40 0.099
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 40 0.099
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 40 0.099
gb|BQ468712.1|BQ468712 HM02B15r HM Hordeum vulgare subsp. v... 40 0.099
gb|BQ470888.1|BQ470888 HX04F15r HX Hordeum vulgare subsp. v... 40 0.099
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 40 0.099
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 40 0.099
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 40 0.099
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 40 0.099
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 40 0.099
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 40 0.099
gb|CB876447.1|CB876447 HX11E22w HX Hordeum vulgare subsp. v... 40 0.099
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 40 0.099
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 40 0.099
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 40 0.099
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 40 0.099
gb|BE411009.1|BE411009 ISC001.D06F990323 ITEC ISC Barley Le... 38 0.39
gb|BE411614.1|BE411614 ISC007.D11F990713 ITEC ISC Barley Le... 38 0.39
gb|BE411693.1|BE411693 ISC008.C08F990802 ITEC ISC Barley Le... 38 0.39
gb|BE411873.1|BE411873 ISC010.B08F990914 ITEC ISC Barley Le... 38 0.39
gb|BE437693.1|BE437693 SFR006.E04F990705 ITEC SFR Barley Le... 38 0.39
gb|BI957323.1|BI957323 HVSMEn0008O20f Hordeum vulgare rachi... 38 0.39
gb|BE559000.2|BE559000 HV_CEb0022D06f Hordeum vulgare seedl... 38 0.39
gb|AV932094.1|AV932094 AV932094 K. Sato unpublished cDNA li... 38 0.39
gb|BM098943.2|BM098943 EBpi05_SQ002_I04_R pistil, 8 DPA, no... 38 0.39
gb|CA032711.1|CA032711 HX13P23r HX Hordeum vulgare subsp. v... 38 0.39
>gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037A04F1, mRNA sequence
Length = 420
Score = 248 bits (125), Expect = 2e-064
Identities = 224/257 (87%)
Strand = Plus / Minus
Query: 455 gtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgtt 514
|||||| |||||||||||||| ||||| |||| ||||||| | ||||||||||||||||
Sbjct: 261 gtagttaaccaaggagcggtaggtggctccggccttccagctgacggggatgacgttgtt 202
Query: 515 ggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttcagcgc 574
| |||||||| |||||||||||||||||| |||||||||||||||||| | |||||
Sbjct: 201 gacgacgagcttcctgccggagtcggaggtgagccggagcgagaagggcccgcgcagcgg 142
Query: 575 cttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcggggtcca 634
||||||||||||||||||| ||| | ||||||||||||||||||||||| || |||||
Sbjct: 141 cttgccggtgttggagttgaggcgatacagcgcgccccagttctgcaccatgggcgtcca 82
Query: 635 cgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaa 694
|||||||| ||| |||||||||| ||||| | |||||||||||||| ||||||||||
Sbjct: 81 ggtgccgcagttggcttccatgaggtcgacggtgttgaggtcgccgtcgtcgtcctcgaa 22
Query: 695 ctcgatgagcacctcca 711
|||||| ||||||||||
Sbjct: 21 ctcgatcagcacctcca 5
>gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087A08F1, mRNA sequence
Length = 420
Score = 184 bits (93), Expect = 3e-045
Identities = 165/189 (87%)
Strand = Plus / Minus
Query: 455 gtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgtt 514
|||||| |||||||||||||| ||||| |||| ||||||| | ||||||||||||||||
Sbjct: 200 gtagttaaccaaggagcggtaggtggctccggccttccagctgacggggatgacgttgtt 141
Query: 515 ggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgccttcagcgc 574
| |||||||| |||||||||||||||||| |||||||||||||||||| | |||||
Sbjct: 140 gacgacgagcttcctgccggagtcggaggtgagccggagcgagaagggcccgcgcagcgg 81
Query: 575 cttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcggggtcca 634
||||||||||||||||||| ||| | ||||||||||||||||||||||| || |||||
Sbjct: 80 cttgccggtgttggagttgaggcgatacagcgcgccccagttctgcaccatgggcgtcca 21
Query: 635 cgtgccgca 643
||||||||
Sbjct: 20 ggtgccgca 12
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 176 bits (89), Expect = 7e-043
Identities = 235/281 (83%), Gaps = 2/281 (0%)
Strand = Plus / Minus
Query: 446 caatcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggat 505
|||| ||| |||||| |||||||| ||||| ||||| |||| ||||||| | ||||||
Sbjct: 651 caattaggggtagttaaccaaggaccggtaggtggctccggccttccagctgacggggaa 592
Query: 506 gacgttgttggc-gacgagcaccctgccgg-agtcggaggtcagccggagcgagaagggc 563
||||| || | ||||||| |||||||| |||||||||| | ||||||||||||||||
Sbjct: 591 tacgttttttaccgacgagcttcctgccgggagtcggaggtgacccggagcgagaagggc 532
Query: 564 gccttcagcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcacc 623
| || || ||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 531 ccgcgcaacggcttgccggtgttggagttgaggcgatacagcgcgccccagttctgcacc 472
Query: 624 atcggggtccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcg 683
|| || ||||| |||||||| |||||||||||||| ||||| | | ||||||||||||
Sbjct: 471 atgggcgtccaggtgccgcagttggcctccatgaggtcgacggtgttaaggtcgccgtcg 412
Query: 684 ccgtcctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||||||| |||||||||| |||||| |||||
Sbjct: 411 tcgtcctcgaactcgatcagcacctccaggtagaaggggtt 371
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 151 bits (76), Expect = 4e-035
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 569 cagcgccttgccggtgttggagttgtagcgccagagcgcgccccagttctgcaccatcgg 628
||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||| ||
Sbjct: 542 cagcggcttgccggtgttggagttgaggcgatacagcgcgccccagttctgcaccatggg 483
Query: 629 ggtccacgtgccgcacccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtc 688
||||| |||||||| ||| |||||||||| ||||| | |||||||||||||| ||||
Sbjct: 482 cgtccaggtgccgcagttggcttccatgaggtcgacggtgttgaggtcgccgtcgtcgtc 423
Query: 689 ctcgaactcgatgagcacctccaagtagaacgggtt 724
|||||||||||| |||||||||| |||||| |||||
Sbjct: 422 ctcgaactcgatcagcacctccaggtagaaggggtt 387
>gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C08f, mRNA sequence
Length = 737
Score = 125 bits (63), Expect = 2e-027
Identities = 120/139 (86%)
Strand = Plus / Plus
Query: 449 tcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgac 508
||||| ||||||||||| ||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 465 tcaggggtagttcaccagggagcggtacgtggctccggccttccaattggcggggatgac 524
Query: 509 gttgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgcctt 568
||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| ||| |
Sbjct: 525 gttgttgacgacgagcttcctgccggagtcggaggtgagccggaacgagaagggggccct 584
Query: 569 cagcgccttgccggtgttg 587
|| | | |||||| |||||
Sbjct: 585 caccccgttgccgctgttg 603
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
||||||||||| ||| ||||||||||||||
Sbjct: 345 tcctcctcctcatctgacaccgcctctcgc 374
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 115 bits (58), Expect = 2e-024
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 449 tcaggagtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgac 508
||||| ||||||||||| ||||||||||||||| |||| |||||| |||| |||||||
Sbjct: 590 tcaggggtagttcaccagggagcggtacgtggctccggcattccagttggcgaggatgac 531
Query: 509 gttgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaaggg 562
||||||| ||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 530 gttgttgatgacgagcttcctgccggagtcggaggtgagctggagcgagaaggg 477
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 645 ccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaactcgat 700
||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 400 ccggcctccttgagggccacggccttgaggtcgccgtcgtcgtcctcgaactcgat 345
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 67.9 bits (34), Expect = 4e-010
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 504 atgacgttgttggcgacgagcaccctgccggagtcggaggtcagccggagcgagaaggg 562
|||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 529 atgacgttgttgannacgagcttcctgccggagtcgnaggtgagccggagcgagaaggg 471
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 645 ccggcctccatgaggtggacggcgctgaggtcgccgtcgccgtcctcgaactcgat 700
||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 394 ccggcctccttgagggccacggccttgaggtcgccgtcgtcgtcctcgaactcgat 339
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 63.9 bits (32), Expect = 7e-009
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 454 agtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgt 513
||||||| || | ||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 200 agtagttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgttac 141
Query: 514 tggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgc 565
| || ||||| | |||||||| |||||| || |||| ||||||||||||
Sbjct: 140 ttgccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgc 89
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 63.9 bits (32), Expect = 7e-009
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 454 agtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgt 513
||||||| || | ||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 495 agtagttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgttac 436
Query: 514 tggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgc 565
| || ||||| | |||||||| |||||| || |||| ||||||||||||
Sbjct: 435 ttgccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgc 384
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||||||||||||
Sbjct: 277 aggtcgccgtcgccgtcctcgtactcgatgagcac 243
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||||||||||||
Sbjct: 581 aggtcgccgtcgccgtcctcgtactcgatgagcac 547
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||||||||||||
Sbjct: 491 aggtcgccgtcgccgtcctcgtactcgatgagcac 457
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||||||||||||
Sbjct: 236 aggtcgccgtcgccgtcctcgtactcgatgagcac 202
Score = 44.1 bits (22), Expect = 0.006
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 492 cagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagccgg 551
|||||||||||||||||||| | || ||||| | |||||||| |||||| || |||
Sbjct: 416 cagccggcggggatgacgttacttgccacgagagtcttgccggagctggaggtgaggcgg 357
Query: 552 agcgagaagggcgc 565
| ||||||||||||
Sbjct: 356 accgagaagggcgc 343
>gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_K24 5', mRNA sequence
Length = 147
Score = 61.9 bits (31), Expect = 3e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 490 tccagccggcggggatgacgttgttggcgacgagcaccctgccggagtcggaggtcagcc 549
|||| |||||||||| ||| |||||||||||||||||| ||||||| | ||||| ||||
Sbjct: 138 tccacccggcggggacgacattgttggcgacgagcaccttgccggaacccgaggtgagcc 79
Query: 550 gga 552
|||
Sbjct: 78 gga 76
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||||||||||||
Sbjct: 263 aggtcgccgtcgccgtcctcgtactcgatgagcac 229
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 454 agtagttcaccaaggagcggtacgtggccccggggttccagccggcggggatgacgttgt 513
||||||| || | ||||||||| ||| | || || |||||||||||||||||||||||
Sbjct: 481 agtagttgacgacggagcggtaggtgccgccaggcttccagccggcggggatgacgttac 422
Query: 514 tggcgacgagcaccctgccggagtcggaggtcagccggagcgagaagggcgc 565
| || ||||| | |||||||| |||||| || |||| ||||||||||||
Sbjct: 421 ttgccacgagagtcttgccggagctggaggtgaggcggaccgagaagggcgc 370
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aggtcgccgtcgccgtcctcgaactcgatgagcac 706
||||||||||||||||||||| |||| ||||||||
Sbjct: 631 aggtcgccgtcgccgtcctcgtactcaatgagcac 597
>gb|AV917087.1|AV917087 AV917087 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l14 5', mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 674 gtcgccgtcgccgtcctcgaactcgatgagca 705
|||||| ||||||||||||||||||| |||||
Sbjct: 136 gtcgccctcgccgtcctcgaactcgacgagca 105
>gb|BM097925.1|BM097925 EBpi03_SQ002_B03_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_B03 5', mRNA sequence
Length = 367
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
||||||||||| ||| ||||||||||||||
Sbjct: 118 tcctcctcctcatctgacaccgcctctcgc 89
>gb|BU973070.1|BU973070 HB23K15r BC Hordeum vulgare subsp. vulgare cDNA clone HB23K15
5-PRIME, mRNA sequence
Length = 381
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 256 tcctcctcctcttcttacaccgcctctcgc 285
||||||||||| ||| ||||||||||||||
Sbjct: 159 tcctcctcctcatctgacaccgcctctcgc 130
Score = 42.1 bits (21), Expect = 0.025
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 449 tcaggagtagttcaccaaggagcggtacg 477
||||| ||||||||||| |||||||||||
Sbjct: 39 tcaggggtagttcaccagggagcggtacg 11
>gb|BF259422.2|BF259422 HVSMEf0019B03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019B03f, mRNA sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 31 gctccttcaccttcttgtcctcctc 7
>gb|BG366681.1|BG366681 HVSMEi0007N15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0007N15f, mRNA sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 123 gctccttcaccttcttgtcctcctc 99
>gb|BG416105.1|BG416105 HVSMEk0009M10f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009M10f, mRNA sequence
Length = 1010
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 83 gctccttcaccttcttgtcctcctc 59
>gb|BI960356.1|BI960356 HVSMEn0024F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024F10f, mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 297 gctccttcaccttcttgtcctcctc 273
>gb|AV909277.1|AV909277 AV909277 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12d23 5', mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 498 gctccttcaccttcttgtcctcctc 474
>gb|AV911163.1|AV911163 AV911163 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12d23 3', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 534 gctccttcaccttcttgtcctcctc 558
>gb|AV913814.1|AV913814 AV913814 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g04 5', mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 480 gctccttcaccttcttgtcctcctc 456
>gb|AV915174.1|AV915174 AV915174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13d10 5', mRNA sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 396 gctccttcaccttcttgtcctcctc 372
>gb|AV919176.1|AV919176 AV919176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4n21 3', mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 556 gctccttcaccttcttgtcctcctc 580
>gb|AV920296.1|AV920296 AV920296 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13d10 3', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 525 gctccttcaccttcttgtcctcctc 549
>gb|AV921426.1|AV921426 AV921426 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g04 3', mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 436 gctccttcaccttcttgtcctcctc 460
>gb|AV928187.1|AV928187 AV928187 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e19 3', mRNA sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 425 gctccttcaccttcttgtcctcctc 449
>gb|AV929618.1|AV929618 AV929618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14o14 3', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 584 gctccttcaccttcttgtcctcctc 608
>gb|BM101479.2|BM101479 EBpi01_SQ003_P15_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_P15 5', mRNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 388 gctccttcaccttcttgtcctcctc 364
>gb|BQ753516.1|BQ753516 EBan01_SQ004_H19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_H19 5', mRNA sequence
Length = 488
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 409 gctccttcaccttcttgtcctcctc 385
>gb|BQ762960.1|BQ762960 EBro02_SQ006_N17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_N17 5', mRNA sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 189 gctccttcaccttcttgtcctcctc 165
>gb|BU971951.1|BU971951 HB20C16r BC Hordeum vulgare subsp. vulgare cDNA clone HB20C16
5-PRIME, mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 145 gctccttcaccttcttgtcctcctc 121
>gb|BU976575.1|BU976575 HA03O23r HA Hordeum vulgare subsp. vulgare cDNA clone HA03O23
5-PRIME, mRNA sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 45 gctccttcaccttcttgtcctcctc 21
>gb|BU981821.1|BU981821 HA24L19r HA Hordeum vulgare subsp. vulgare cDNA clone HA24L19
5-PRIME, mRNA sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 93 gctccttcaccttcttgtcctcctc 69
>gb|BU994952.1|BU994952 HM08L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM08L14
5-PRIME, mRNA sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 458 gctccttcaccttcttgtcctcctc 434
>gb|BU995338.1|BU995338 HM09O23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09O23
5-PRIME, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 294 gctccttcaccttcttgtcctcctc 270
>gb|CA000736.1|CA000736 HS07A05u HS Hordeum vulgare subsp. vulgare cDNA clone HS07A05
3-PRIME, mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 481 gctccttcaccttcttgtcctcctc 505
>gb|CA021894.1|CA021894 HZ41H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41H12
5-PRIME, mRNA sequence
Length = 411
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 367 gctccttcaccttcttgtcctcctc 343
>gb|CA023690.1|CA023690 HZ47B11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47B11
5-PRIME, mRNA sequence
Length = 429
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 93 gctccttcaccttcttgtcctcctc 69
>gb|CA029801.1|CA029801 HX05E03r HX Hordeum vulgare subsp. vulgare cDNA clone HX05E03
5-PRIME, mRNA sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 199 gctccttcaccttcttgtcctcctc 175
>gb|CA031351.1|CA031351 HX09L08r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L08
5-PRIME, mRNA sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 202 gctccttcaccttcttgtcctcctc 178
>gb|BJ549181.1|BJ549181 BJ549181 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a24 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 464 gctccttcaccttcttgtcctcctc 440
>gb|BJ549965.1|BJ549965 BJ549965 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a24 3', mRNA sequence
Length = 576
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 544 gctccttcaccttcttgtcctcctc 568
>gb|CB874434.1|CB874434 HX05E03w HX Hordeum vulgare subsp. vulgare cDNA clone HX05E03
3-PRIME, mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 486 gctccttcaccttcttgtcctcctc 510
>gb|CB874491.1|CB874491 HX05G21w HX Hordeum vulgare subsp. vulgare cDNA clone HX05G21
3-PRIME, mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 463 gctccttcaccttcttgtcctcctc 487
>gb|CB875904.1|CB875904 HX09L08w HX Hordeum vulgare subsp. vulgare cDNA clone HX09L08
3-PRIME, mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 486 gctccttcaccttcttgtcctcctc 510
>gb|CB880094.1|CB880094 HM05H14w HM Hordeum vulgare subsp. vulgare cDNA clone HM05H14
3-PRIME, mRNA sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 239 gctccttaaccttcttgtcctcctc 263
||||||| |||||||||||||||||
Sbjct: 573 gctccttcaccttcttgtcctcctc 597
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,481
Number of Sequences: 312970
Number of extensions: 134481
Number of successful extensions: 42634
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42499
Number of HSP's gapped (non-prelim): 130
length of query: 729
length of database: 175,134,539
effective HSP length: 19
effective length of query: 710
effective length of database: 169,188,109
effective search space: 120123557390
effective search space used: 120123557390
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)