BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare s... 353 6e-096
gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, dro... 353 6e-096
gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedl... 345 1e-093
gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulg... 309 8e-083
gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare su... 293 4e-078
gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulg... 281 2e-074
gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedl... 262 2e-068
gb|AU090208.1|AU090208 AU090208 Hordeum vulgare subsp. vulg... 256 1e-066
gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green... 149 2e-034
gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. v... 149 2e-034
gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, n... 149 2e-034
gb|BM098504.2|BM098504 EBem08_SQ003_E01_R embryo, 40 DPA, n... 149 2e-034
gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, n... 149 2e-034
gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. v... 149 2e-034
gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. v... 149 2e-034
gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. v... 149 2e-034
gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. v... 149 2e-034
gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. v... 149 2e-034
gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. v... 149 2e-034
gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. v... 149 2e-034
gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. v... 141 4e-032
gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. v... 141 4e-032
gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. v... 141 4e-032
gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. v... 141 4e-032
gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. v... 135 2e-030
gb|BQ756390.1|BQ756390 EBem08_SQ002_A12_R embryo, 40 DPA, n... 131 4e-029
gb|BM441942.2|BM441942 EBed07_SQ001_P20_R endosperm, 28 DPA... 113 9e-024
gb|BI778717.2|BI778717 EBro01_SQ001_D07_R root, 3 week, hyd... 113 9e-024
gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. v... 84 8e-015
gb|BE194599.3|BE194599 HVSMEh0086C18f Hordeum vulgare 5-45 ... 46 0.002
gb|BU970114.1|BU970114 HB13K10r BC Hordeum vulgare subsp. v... 46 0.002
gb|BF616881.1|BF616881 HVSMEc0013G08f Hordeum vulgare seedl... 38 0.43
gb|BF618024.2|BF618024 HVSMEc0003C24f Hordeum vulgare seedl... 38 0.43
gb|BF256723.2|BF256723 HVSMEf0010N05f Hordeum vulgare seedl... 38 0.43
gb|BG367190.2|BG367190 HVSMEi0011D17f Hordeum vulgare 20 DA... 38 0.43
gb|BM816004.1|BM816004 HB105F12_SK.ab1 HB Hordeum vulgare s... 38 0.43
gb|BQ465705.1|BQ465705 HU04H03r HU Hordeum vulgare subsp. v... 38 0.43
gb|BQ470914.1|BQ470914 HX04G18r HX Hordeum vulgare subsp. v... 38 0.43
>gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110A01_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare],gene_id:MFB16.12
pir|T05517 similar to unknown protein [Arabidopsis
thaliana], mRNA sequence
Length = 821
Score = 353 bits (178), Expect = 6e-096
Identities = 286/322 (88%)
Strand = Plus / Minus
Query: 295 ggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcc 354
||||||||||||||||| ||||||||| | |||||| |||||||||||||||| || ||
Sbjct: 452 ggtgaggccgtgcttcctgagctgctccctgacgaacctgtcgtagatgaaggccgctcc 393
Query: 355 cctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggg 414
|||||||||||| ||| | |||||||| | |||||||||||| |||||||||||||| ||
Sbjct: 392 cctgaagttgggcagcgccagccacgccaggaacagcagcttcagctcgtaccagatcgg 333
Query: 415 gatccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggat 474
|||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 332 tatccagtagatgagggactcgaggaccatctcgacgagcgtgacgaaggagtagaggat 273
Query: 475 ccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacgga 534
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 272 ccagtaggccagccactgctcgtcgtccagcttggacgggctctccatcgcctgcaccga 213
Query: 535 cgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgag 594
||| |||| || ||||| ||||||||| |||||||| |||| ||||||||| |||||
Sbjct: 212 cgcatacaagggatacaggagcatcaccccaggccctgcgagggtgtggaggtgggtgag 153
Query: 595 gatcgtccacagcttgcccatc 616
||| ||||| ||||||| ||||
Sbjct: 152 gatggtccagagcttgctcatc 131
>gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F15 5', mRNA sequence
Length = 622
Score = 353 bits (178), Expect = 6e-096
Identities = 286/322 (88%)
Strand = Plus / Minus
Query: 295 ggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcc 354
||||||||||||||||| ||||||||| | |||||| |||||||||||||||| || ||
Sbjct: 434 ggtgaggccgtgcttcctgagctgctccctgacgaacctgtcgtagatgaaggccgctcc 375
Query: 355 cctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggg 414
|||||||||||| ||| | |||||||| | |||||||||||| |||||||||||||| ||
Sbjct: 374 cctgaagttgggcagcgccagccacgccaggaacagcagcttcagctcgtaccagatcgg 315
Query: 415 gatccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggat 474
|||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 314 tatccagtagatgagggactcgaggaccatctcgacgagcgtgacgaaggagtagaggat 255
Query: 475 ccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacgga 534
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 254 ccagtaggccagccactgctcgtcgtccagcttggacgggctctccatcgcctgcaccga 195
Query: 535 cgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgag 594
||| |||| || ||||| ||||||||| |||||||| |||| ||||||||| |||||
Sbjct: 194 cgcatacaagggatacaggagcatcaccccaggccctgcgagggtgtggaggtgggtgag 135
Query: 595 gatcgtccacagcttgcccatc 616
||| ||||| ||||||| ||||
Sbjct: 134 gatggtccagagcttgctcatc 113
>gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007B05f, mRNA sequence
Length = 496
Score = 345 bits (174), Expect = 1e-093
Identities = 285/322 (88%)
Strand = Plus / Minus
Query: 295 ggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcc 354
|||||| |||||||||| ||||||||| | |||||| |||||||||||||||| || ||
Sbjct: 432 ggtgagcccgtgcttcctgagctgctccctgacgaacctgtcgtagatgaaggccgctcc 373
Query: 355 cctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggg 414
|||||||||||| ||| | |||||||| | |||||||||||| |||||||||||||| ||
Sbjct: 372 cctgaagttgggcagcgccagccacgccaggaacagcagcttcagctcgtaccagatcgg 313
Query: 415 gatccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggat 474
|||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 312 tatccagtagatgagggactcgaggaccatctcgacgagcgtgacgaaggagtagaggat 253
Query: 475 ccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacgga 534
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 252 ccagtaggccagccactgctcgtcgtccagcttggacgggctctccatcgcctgcaccga 193
Query: 535 cgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgag 594
||| |||| || ||||| ||||||||| |||||||| |||| ||||||||| |||||
Sbjct: 192 cgcatacaagggatacaggagcatcaccccaggccctgcgagggtgtggaggtgggtgag 133
Query: 595 gatcgtccacagcttgcccatc 616
||| ||||| ||||||| ||||
Sbjct: 132 gatggtccagagcttgctcatc 111
>gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_021, mRNA sequence
Length = 485
Score = 309 bits (156), Expect = 8e-083
Identities = 278/316 (87%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 301 gccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaa 360
||||||||||| ||||||||| | |||||| |||||||||||||| || | ||||||||
Sbjct: 439 gccgtgcttcctgagctgctccctgacgaacctgtcgtagatgaagccg-ctcccctgaa 381
Query: 361 gttggggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatcca 420
||||| ||| | |||||||| | |||||||||||| |||||||||||||| || |||||
Sbjct: 380 gttggc-agcgccagccacgccaggaacagcagcttcagctcgtaccagatcggtatcca 322
Query: 421 gtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagta 480
||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 321 gtagatgagggactcgaggaccatctcgacgagcgtgacgaaggagtagaggatccagta 262
Query: 481 ggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgta 540
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 261 ggccagccactgctcgtcgtccagcttggacgggctctccatcgcctgcaccgacgcata 202
Query: 541 cagagggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgaggatcgt 600
|| || ||||| ||||||||| |||||||| |||| ||||||||| |||||||| ||
Sbjct: 201 caagggatacaggagcatcaccccaggccctgcgagggtgtggaggtgggtgaggatggt 142
Query: 601 ccacagcttgcccatc 616
||| ||||||| ||||
Sbjct: 141 ccagagcttgctcatc 126
>gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC03F05_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare], mRNA sequence
Length = 872
Score = 293 bits (148), Expect = 4e-078
Identities = 250/284 (88%)
Strand = Plus / Minus
Query: 333 tgtcgtagatgaaggcggcgcccctgaagttggggagcacgagccacgcgatgaacagca 392
|||||||||||||| | || ||||| ||||||| ||| | |||||||| | ||||||||
Sbjct: 354 tgtcgtagatgaagcccgctcccctatagttgggcagcgccagccacgccaggaacagca 295
Query: 393 gcttgagctcgtaccagatggggatccagtatatgagggactcgaggagcatctccatga 452
|||| |||||||||||||| || |||||||| |||||||||||||||| |||||| | ||
Sbjct: 294 gcttcagctcgtaccagatcggtatccagtagatgagggactcgaggaccatctcgacga 235
Query: 453 gcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacg 512
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 234 gcgtgacgaaggagtagaggatccagtaggccagccactgctcgtcgtccagcttggacg 175
Query: 513 ggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcaccgttggccctg 572
|||||||||||||| |||| ||||| |||| || ||||| ||||||||| |||||||
Sbjct: 174 ggctctccatcgcctgcaccgacgcatacaagggatacaggagcatcaccccaggccctg 115
Query: 573 ctagggagtggaggtgagtgaggatcgtccacagcttgcccatc 616
| |||| ||||||||| |||||||| ||||| ||||||| ||||
Sbjct: 114 cgagggtgtggaggtgggtgaggatggtccagagcttgctcatc 71
>gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_049, mRNA sequence
Length = 440
Score = 281 bits (142), Expect = 2e-074
Identities = 249/282 (88%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 335 tcgtagatgaaggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagc 394
|||||||| ||||| || ||||||||||||| ||| | |||||||| | ||||||||||
Sbjct: 406 tcgtagat-aaggccgctcccctgaagttggc-agcgccagccacgccaggaacagcagc 349
Query: 395 ttgagctcgtaccagatggggatccagtatatgagggactcgaggagcatctccatgagc 454
|| |||||||||||||| || |||||||| |||||||||||||||| |||||| | ||||
Sbjct: 348 ttcagctcgtaccagatcggtatccagtagatgagggactcgaggaccatctcgacgagc 289
Query: 455 gtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacggg 514
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 288 gtgacgaaggagtagaggatccagtaggccagccactgctcgtcgtccagcttggacggg 229
Query: 515 ctctccatcgcccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgct 574
|||||||||||| |||| ||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 228 ctctccatcgcctgcaccgacgcatacaagggatacaggagcatcaccccaggccctgcg 169
Query: 575 agggagtggaggtgagtgaggatcgtccacagcttgcccatc 616
|||| ||||||||| |||||||| ||||| ||||||| ||||
Sbjct: 168 agggtgtggaggtgggtgaggatggtccagagcttgctcatc 127
>gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015O16f, mRNA sequence
Length = 853
Score = 262 bits (132), Expect = 2e-068
Identities = 253/292 (86%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 326 acgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcacgagccacgcgatg 385
|||||| |||||||||||||||| || |||||||||||||| ||| | |||| ||| | |
Sbjct: 427 acgaacctgtcgtagatgaaggccgctcccctgaagttgggcagcgccagcctcgccagg 368
Query: 386 aac-agcagcttgagctcgtaccagatggggatccagtatatgagggactcgaggagcat 444
||| |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||
Sbjct: 367 aaccagcagcttaagctcgtaccagatcggtatccagtagatgagggactcgaggaccat 308
Query: 445 ctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccag 504
||| | ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 307 ctcgacgagcgtgccgaaggagtagaggatccagtaggccagccactgctagtcgtccag 248
Query: 505 cttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcaccgt 564
|||||||||||||||||||||| |||| ||||| |||| || ||||| |||||||||
Sbjct: 247 cttggacgggctctccatcgcctgcaccgacgcatacaagggatacaggagcatcacccc 188
Query: 565 tggccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccatc 616
|||||||| |||| ||| ||||| || ||||| ||||| ||| ||| ||||
Sbjct: 187 aggccctgcgagggtgtgaaggtgggtaaggatggtccagagcatgctcatc 136
>gb|AU090208.1|AU090208 AU090208 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_218, mRNA sequence
Length = 499
Score = 256 bits (129), Expect = 1e-066
Identities = 232/265 (87%), Gaps = 1/265 (0%)
Strand = Plus / Minus
Query: 353 cccctgaagttggggagcacgagccacgcgatgaacagc-agcttgagctcgtaccagat 411
||||||||||||| ||| | |||||||| | || ||| ||||| ||||||||||||||
Sbjct: 391 cccctgaagttggcaagcgccagccacgccaggacaagcaagcttcagctcgtaccagat 332
Query: 412 ggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagag 471
|| |||||||| |||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 331 cggtatccagtagatgagggactcgaggaccatctcgacgagcgtgacgaaggagtagag 272
Query: 472 gatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcac 531
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 271 gatccagtaggccagccactgctcgtcgtccagcttggacgggctctccatcgcctgcac 212
Query: 532 ggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggaggtgagt 591
||||| |||| || ||||| ||||||||| |||||||| |||| ||||||||| ||
Sbjct: 211 cgacgcatacaagggatacaggagcatcaccccaggccctgcgagggtgtggaggtgggt 152
Query: 592 gaggatcgtccacagcttgcccatc 616
|||||| ||||| ||||||| ||||
Sbjct: 151 gaggatggtccagagcttgctcatc 127
>gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006F13f, mRNA sequence
Length = 780
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 331 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 272
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 271 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 212
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 211 gcttggcccggcgacggagtggaggtgggtgagga 177
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 466 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 407
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 406 gagcgccagccaggccacgaacagcagctt 377
>gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. vulgare cDNA clone HT01M19
5-PRIME, mRNA sequence
Length = 646
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 298 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 239
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 238 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 179
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 178 gcttggcccggcgacggagtggaggtgggtgagga 144
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 433 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 374
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 373 gagcgccagccaggccacgaacagcagctt 344
>gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_G11 5', mRNA sequence
Length = 508
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 290 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 231
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 230 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 171
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 170 gcttggcccggcgacggagtggaggtgggtgagga 136
Score = 56.0 bits (28), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||| ||||||||||||||||| ||||||| |||| | |||||| |
Sbjct: 419 gagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgggagcgc 360
Query: 373 gagccacgcgatgaacagcagctt 396
||||| || | ||||||||||||
Sbjct: 359 cagccaggccacgaacagcagctt 336
>gb|BM098504.2|BM098504 EBem08_SQ003_E01_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_E01 5', mRNA sequence
Length = 369
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 328 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 269
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 268 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 209
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 208 gcttggcccggcgacggagtggaggtgggtgagga 174
>gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_I17 5', mRNA sequence
Length = 499
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 328 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 269
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 268 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 209
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 208 gcttggcccggcgacggagtggaggtgggtgagga 174
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 463 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 404
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 403 gagcgccagccaggccacgaacagcagctt 374
>gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L17
5-PRIME, mRNA sequence
Length = 552
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 350 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 291
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 290 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 231
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 230 gcttggcccggcgacggagtggaggtgggtgagga 196
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 485 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 426
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 425 gagcgccagccaggccacgaacagcagctt 396
>gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J06
5-PRIME, mRNA sequence
Length = 535
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 350 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 291
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 290 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 231
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 230 gcttggcccggcgacggagtggaggtgggtgagga 196
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 485 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 426
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 425 gagcgccagccaggccacgaacagcagctt 396
>gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. vulgare cDNA clone HF11P23
5-PRIME, mRNA sequence
Length = 579
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 231 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 172
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 171 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 112
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 111 gcttggcccggcgacggagtggaggtgggtgagga 77
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 451 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 392
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 391 gagcgccagccaggccacgaacagcagctt 362
>gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
5-PRIME, mRNA sequence
Length = 621
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 338 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 279
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 278 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 219
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 218 gcttggcccggcgacggagtggaggtgggtgagga 184
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 473 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 414
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 413 gagcgccagccaggccacgaacagcagctt 384
>gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. vulgare cDNA clone HT04D03
5-PRIME, mRNA sequence
Length = 563
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 300 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 241
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 240 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 181
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 180 gcttggcccggcgacggagtggaggtgggtgagga 146
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 435 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 376
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 375 gagcgccagccaggccacgaacagcagctt 346
>gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
5-PRIME, mRNA sequence
Length = 537
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 339 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 280
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 279 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 220
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 219 gcttggcccggcgacggagtggaggtgggtgagga 185
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 474 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 415
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 414 gagcgccagccaggccacgaacagcagctt 385
>gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
3-PRIME, mRNA sequence
Length = 589
Score = 149 bits (75), Expect = 2e-034
Identities = 135/155 (87%)
Strand = Plus / Plus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 380 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 439
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 440 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 499
Query: 562 cgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 500 gcttggcccggcgacggagtggaggtgggtgagga 534
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 245 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 304
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 305 gagcgccagccaggccacgaacagcagctt 334
>gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. vulgare cDNA clone HF07O06
5-PRIME, mRNA sequence
Length = 202
Score = 141 bits (71), Expect = 4e-032
Identities = 104/115 (90%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 123 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 64
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagc 556
|| |||||||||||||||||| || | ||| ||||| ||||||||||||||||||
Sbjct: 63 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagc 9
>gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. vulgare cDNA clone HM13M20
5-PRIME, mRNA sequence
Length = 645
Score = 141 bits (71), Expect = 4e-032
Identities = 104/115 (90%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 205 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 146
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagc 556
|| |||||||||||||||||| || | ||| ||||| ||||||||||||||||||
Sbjct: 145 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagc 91
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 340 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 281
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 280 gagcgccagccaggccacgaacagcagctt 251
>gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H24
5-PRIME, mRNA sequence
Length = 587
Score = 141 bits (71), Expect = 4e-032
Identities = 104/115 (90%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 211 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 152
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagc 556
|| |||||||||||||||||| || | ||| ||||| ||||||||||||||||||
Sbjct: 151 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagc 97
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 346 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 287
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 286 gagcgccagccaggccacgaacagcagctt 257
>gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
3-PRIME, mRNA sequence
Length = 550
Score = 141 bits (71), Expect = 4e-032
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 378 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 437
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacagcagcatcac 561
|| |||||||||||||||||| || | ||| ||||| |||||||||||||||||| | |
Sbjct: 438 caccttggacgggctctccatggcgcacaccgacgcatacagagggtacagcagcgtgat 497
Query: 562 cgttggccctgctagggagtggaggtg 588
||||||| || | ||||||||||||
Sbjct: 498 gcttggcccggcgacggagtggaggtg 524
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 243 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 302
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 303 gagcgccagccaggccacgaacagcagctt 332
>gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L06
5-PRIME, mRNA sequence
Length = 603
Score = 135 bits (68), Expect = 2e-030
Identities = 135/156 (86%), Gaps = 1/156 (0%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 242 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 183
Query: 502 cagcttggacgggctctccatcgcccgcacggacgcgta-cagagggtacagcagcatca 560
|| |||||||||||||||||| || | ||| ||||| || |||||||||||||||| | |
Sbjct: 182 caccttggacgggctctccatggcgcacaccgacgcatancagagggtacagcagcgtga 123
Query: 561 ccgttggccctgctagggagtggaggtgagtgagga 596
||||||| || | |||||||||||| |||||||
Sbjct: 122 tgcttggcccggcgacggagtggaggtgggtgagga 87
Score = 60.0 bits (30), Expect = 1e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||| | ||
Sbjct: 377 cttcctgagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgg 318
Query: 367 gagcacgagccacgcgatgaacagcagctt 396
|||| | ||||| || | ||||||||||||
Sbjct: 317 gagcgccagccaggccacgaacagcagctt 288
>gb|BQ756390.1|BQ756390 EBem08_SQ002_A12_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_A12 5', mRNA sequence
Length = 339
Score = 131 bits (66), Expect = 4e-029
Identities = 123/142 (86%)
Strand = Plus / Minus
Query: 455 gtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacggg 514
|||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct: 338 gtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtcccccttggacggg 279
Query: 515 ctctccatcgcccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgct 574
|||||||| || | ||| ||||| |||||||||||||||||| | | ||||||| ||
Sbjct: 278 ctctccatggcgcacaccgacgcatacagagggtacagcagcgtgatgcttggcccggcg 219
Query: 575 agggagtggaggtgagtgagga 596
| |||||||||||| |||||||
Sbjct: 218 acggagtggaggtgggtgagga 197
>gb|BM441942.2|BM441942 EBed07_SQ001_P20_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P20 5', mRNA sequence
Length = 403
Score = 113 bits (57), Expect = 9e-024
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 101 catctccaggagggtgatgaaggagtagaggatccagtatgccagccactgctcgtcgtc 42
Query: 502 cagcttggacgggctctccat 522
|| ||||||||||||||||||
Sbjct: 41 caccttggacgggctctccat 21
Score = 56.0 bits (28), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||| ||||||||||||||||| ||||||| |||| | |||||| |
Sbjct: 249 gagctgctccctgacgaccttgtcgtagatgaaggaggcgcccttgaactgcgggagcgc 190
Query: 373 gagccacgcgatgaacagcagctt 396
||||| || | ||||||||||||
Sbjct: 189 cagccaggccacgaacagcagctt 166
>gb|BI778717.2|BI778717 EBro01_SQ001_D07_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_D07 5', mRNA sequence
Length = 393
Score = 113 bits (57), Expect = 9e-024
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 295 ggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcc 354
||||||||||||||||| ||||||||| | |||||| |||||||||||||||| || ||
Sbjct: 109 ggtgaggccgtgcttcctgagctgctccctgacgaacctgtcgtagatgaaggccgctcc 50
Query: 355 cctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcg 403
|||||||||||| ||| | |||||||| | |||||||||||| ||||||
Sbjct: 49 cctgaagttgggcagcgccagccacgccaggaacagcagcttcagctcg 1
>gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. vulgare cDNA clone HA07M09
5-PRIME, mRNA sequence
Length = 647
Score = 83.8 bits (42), Expect = 8e-015
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 460 gaaggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctc 519
||||||||||| ||||||||||| ||||| || |||||||||||||||||| ||||||
Sbjct: 210 gaaggagtagattatccagtaggccagccattggccgtcgtccagcttggacgtgctctc 151
Query: 520 catcgcccgcacggacgcgtacagagggta 549
|||||| | | |||||||||||| |||||
Sbjct: 150 catcgcgcagatggacgcgtacagcgggta 121
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 302 ccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaag 361
|||||||||| || |||||| | |||||||| ||||||||||||| |||||||||||
Sbjct: 368 ccgtgcttcctgatctgctccctgacgaacttctcgtagatgaaggacgcgcccctgaac 309
Query: 362 ttggggagcacgagccacgcgatgaacagcagcttgagctcgtacca 408
| || ||||| |||||||| | ||| |||||||| | |||||||||
Sbjct: 308 tgcggcagcaccagccacgccacgaatagcagcttcacctcgtacca 262
>gb|BE194599.3|BE194599 HVSMEh0086C18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086C18f, mRNA sequence
Length = 812
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 260 gacgacggcgacgacgacttgacggag 286
|||||||||||||||||||||| ||||
Sbjct: 37 gacgacggcgacgacgacttgagggag 63
>gb|BU970114.1|BU970114 HB13K10r BC Hordeum vulgare subsp. vulgare cDNA clone HB13K10
5-PRIME, mRNA sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 260 gacgacggcgacgacgacttgacggag 286
|||||||||||||||||||||| ||||
Sbjct: 94 gacgacggcgacgacgacttgagggag 120
>gb|BF616881.1|BF616881 HVSMEc0013G08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013G08f, mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 345 aggcggcgcccctgaagtt 363
|||||||||||||||||||
Sbjct: 84 aggcggcgcccctgaagtt 66
>gb|BF618024.2|BF618024 HVSMEc0003C24f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003C24f, mRNA sequence
Length = 756
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 322 ggacgacggcgacgacgac 340
>gb|BF256723.2|BF256723 HVSMEf0010N05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010N05f, mRNA sequence
Length = 856
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 29 ggacgacggcgacgacgac 47
>gb|BG367190.2|BG367190 HVSMEi0011D17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011D17f, mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 146 ggacgacggcgacgacgac 164
>gb|BM816004.1|BM816004 HB105F12_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105F12_SK.ab1 similar to DNA-binding protein MYB1 from
Petroselinum crispum and contains MYB-DNA-binding
PF|00249 and linker-Histone PF|00538 domains
[Arabidopsis thaliana],DNA-binding protein MYB1
[Petroselinum crispum],MYB-like protein [Arabidopsis
thaliana], mRNA sequence
Length = 855
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 480 ggacgacggcgacgacgac 498
>gb|BQ465705.1|BQ465705 HU04H03r HU Hordeum vulgare subsp. vulgare cDNA clone HU04H03
5-PRIME, mRNA sequence
Length = 588
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 165 ggacgacggcgacgacgac 183
>gb|BQ470914.1|BQ470914 HX04G18r HX Hordeum vulgare subsp. vulgare cDNA clone HX04G18
5-PRIME, mRNA sequence
Length = 462
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgac 277
|||||||||||||||||||
Sbjct: 440 ggacgacggcgacgacgac 458
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,951
Number of Sequences: 312970
Number of extensions: 113951
Number of successful extensions: 32407
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32321
Number of HSP's gapped (non-prelim): 67
length of query: 796
length of database: 175,134,539
effective HSP length: 19
effective length of query: 777
effective length of database: 169,188,109
effective search space: 131459160693
effective search space used: 131459160693
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)