BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedl... 704 0.0
gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hyd... 636 0.0
gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike... 630 e-179
gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedl... 626 e-178
gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachi... 618 e-176
gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA,... 595 e-168
gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. v... 595 e-168
gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachi... 589 e-167
gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachi... 577 e-163
gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. v... 569 e-161
gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA li... 569 e-161
gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachi... 539 e-152
gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachi... 533 e-150
gb|BI954074.1|BI954074 HVSMEm0016B12f Hordeum vulgare green... 511 e-143
gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedl... 509 e-143
gb|BU994274.1|BU994274 HM06H04r HM Hordeum vulgare subsp. v... 460 e-128
gb|BQ754341.1|BQ754341 EBca01_SQ003_K07_R carpel, pre-anthe... 424 e-117
gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. v... 424 e-117
gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachi... 422 e-116
gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. v... 422 e-116
gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. v... 422 e-116
gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. v... 422 e-116
gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. v... 416 e-115
gb|BM097007.2|BM097007 EBpi07_SQ002_B16_R pistil, 12 DPA, n... 375 e-102
gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hyd... 355 2e-096
gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. v... 355 2e-096
gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. v... 355 2e-096
gb|BI956599.1|BI956599 HVSMEn0004F14f Hordeum vulgare rachi... 349 1e-094
gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA li... 339 1e-091
gb|CA028078.1|CA028078 HZ60O17r HZ Hordeum vulgare subsp. v... 321 3e-086
gb|CA024014.1|CA024014 HZ48B24r HZ Hordeum vulgare subsp. v... 311 3e-083
gb|BI780660.2|BI780660 EBes01_SQ001_K19_R embryo sac, 4-6 D... 307 4e-082
gb|BE602379.3|BE602379 HVSMEh0098L05f Hordeum vulgare 5-45 ... 266 2e-069
gb|BF065210.2|BF065210 HV_CEb0024C21f Hordeum vulgare seedl... 208 3e-052
gb|BQ753902.1|BQ753902 EBca01_SQ002_D12_R carpel, pre-anthe... 196 1e-048
gb|BJ545234.1|BJ545234 BJ545234 K. Sato unpublished cDNA li... 170 7e-041
gb|BJ546714.1|BJ546714 BJ546714 K. Sato unpublished cDNA li... 170 7e-041
gb|BM928851.1|BM928851 LP20008 Lemma/palea-enriched cDNA li... 151 6e-035
gb|BQ756877.1|BQ756877 EBem09_SQ005_A16_R embryo, 1 Day ger... 129 2e-028
gb|CD663691.1|CD663691 UCRHV18_06bd02_b1 Drought-stressed D... 115 3e-024
gb|AL505702.1|AL505702 AL505702 Hordeum vulgare Barke roots... 100 2e-019
gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots... 98 8e-019
gb|AL504625.1|AL504625 AL504625 Hordeum vulgare Barke roots... 98 8e-019
gb|BF624013.2|BF624013 HVSMEa0008J18f Hordeum vulgare seedl... 98 8e-019
gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedl... 98 8e-019
gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedl... 98 8e-019
gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedl... 98 8e-019
gb|BG299397.1|BG299397 HVSMEa0019M12f Hordeum vulgare seedl... 98 8e-019
gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedl... 98 8e-019
gb|BI956791.1|BI956791 HVSMEn0005F21f Hordeum vulgare rachi... 98 8e-019
gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachi... 98 8e-019
gb|BI957460.1|BI957460 HVSMEn0009L10f Hordeum vulgare rachi... 98 8e-019
gb|BI957746.1|BI957746 HVSMEn0010P24f Hordeum vulgare rachi... 98 8e-019
gb|BE215236.1|BE215236 HV_CEb0006D22f Hordeum vulgare seedl... 98 8e-019
gb|BE215821.1|BE215821 HV_CEb0008J07f Hordeum vulgare seedl... 98 8e-019
gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedl... 98 8e-019
gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedl... 98 8e-019
gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedl... 98 8e-019
gb|BF065160.1|BF065160 HV_CEb0023K10f Hordeum vulgare seedl... 98 8e-019
gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedl... 98 8e-019
gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedl... 98 8e-019
gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedl... 98 8e-019
gb|BI959367.1|BI959367 HVSMEn0019G08f Hordeum vulgare rachi... 98 8e-019
gb|BI959561.1|BI959561 HVSMEn0020D05f Hordeum vulgare rachi... 98 8e-019
gb|BI959659.1|BI959659 HVSMEn0020K11f Hordeum vulgare rachi... 98 8e-019
gb|BI960119.1|BI960119 HVSMEn0023E19f Hordeum vulgare rachi... 98 8e-019
gb|BI960120.1|BI960120 HVSMEn0023E20f Hordeum vulgare rachi... 98 8e-019
gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachi... 98 8e-019
gb|BE215905.3|BE215905 HV_CEb0008M22f Hordeum vulgare seedl... 98 8e-019
gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedl... 98 8e-019
gb|BQ460884.1|BQ460884 HE01O17r HE Hordeum vulgare subsp. v... 98 8e-019
gb|BQ467961.1|BQ467961 HR01H17r HR Hordeum vulgare subsp. v... 98 8e-019
gb|BQ468035.1|BQ468035 HR01L16r HR Hordeum vulgare subsp. v... 98 8e-019
gb|BQ468043.1|BQ468043 HR01M03r HR Hordeum vulgare subsp. v... 98 8e-019
gb|BQ471953.1|BQ471953 HV03P16r HV Hordeum vulgare subsp. v... 98 8e-019
gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, dro... 98 8e-019
gb|BQ765794.1|BQ765794 EBro03_SQ008_N04_R root, 3 week, wat... 98 8e-019
gb|BU977235.1|BU977235 HA11B05r HA Hordeum vulgare subsp. v... 98 8e-019
gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. v... 98 8e-019
gb|CA017659.1|CA017659 HV05N12r HV Hordeum vulgare subsp. v... 98 8e-019
gb|CA018264.1|CA018264 HV08B21r HV Hordeum vulgare subsp. v... 98 8e-019
gb|CA018785.1|CA018785 HV09K09r HV Hordeum vulgare subsp. v... 98 8e-019
gb|CA019093.1|CA019093 HV10M04r HV Hordeum vulgare subsp. v... 98 8e-019
gb|CA020338.1|CA020338 HZ36A04r HZ Hordeum vulgare subsp. v... 98 8e-019
gb|CA021273.1|CA021273 HZ39J21r HZ Hordeum vulgare subsp. v... 98 8e-019
gb|CA022538.1|CA022538 HZ43I18r HZ Hordeum vulgare subsp. v... 98 8e-019
gb|CA023184.1|CA023184 HZ45H18r HZ Hordeum vulgare subsp. v... 98 8e-019
gb|BI957989.1|BI957989 HVSMEn0012L03f Hordeum vulgare rachi... 96 3e-018
gb|BI956370.1|BI956370 HVSMEn0002O21f Hordeum vulgare rachi... 94 1e-017
gb|BJ464618.1|BJ464618 BJ464618 K. Sato unpublished cDNA li... 94 1e-017
gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedl... 90 2e-016
gb|BF259949.2|BF259949 HVSMEf0020L06f Hordeum vulgare seedl... 90 2e-016
gb|BI952091.1|BI952091 HVSMEm0004J09f Hordeum vulgare green... 90 2e-016
gb|BI956671.1|BI956671 HVSMEn0004L02f Hordeum vulgare rachi... 90 2e-016
gb|BI957710.1|BI957710 HVSMEn0010N01f Hordeum vulgare rachi... 90 2e-016
gb|BF065240.1|BF065240 HV_CEb0024I11f Hordeum vulgare seedl... 90 2e-016
gb|BF264389.2|BF264389 HV_CEa0009E18f Hordeum vulgare seedl... 90 2e-016
gb|BI959395.1|BI959395 HVSMEn0019I06f Hordeum vulgare rachi... 90 2e-016
gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachi... 90 2e-016
gb|BM444060.1|BM444060 EBem09_SQ004_A16_R embryo, 1 Day ger... 90 2e-016
gb|BM443904.2|BM443904 EBem09_SQ001_P18_R embryo, 1 Day ger... 90 2e-016
gb|BM100502.2|BM100502 EBma01_SQ005_G14_R maternal, 4 DPA, ... 90 2e-016
gb|BI779395.2|BI779395 EBro01_SQ003_O04_R root, 3 week, hyd... 90 2e-016
gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. v... 90 2e-016
gb|BF619963.2|BF619963 HVSMEc0009N12f Hordeum vulgare seedl... 88 8e-016
gb|BF261040.2|BF261040 HVSMEf0023J16f Hordeum vulgare seedl... 88 8e-016
gb|BF627066.2|BF627066 HVSMEb0002G16f Hordeum vulgare seedl... 86 3e-015
gb|BF256079.2|BF256079 HVSMEf0008K20f Hordeum vulgare seedl... 86 3e-015
gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedl... 86 3e-015
gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa... 86 3e-015
gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA li... 86 3e-015
gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA li... 86 3e-015
gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA li... 86 3e-015
gb|BQ468365.1|BQ468365 HM01A23T HM Hordeum vulgare subsp. v... 86 3e-015
gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. v... 86 3e-015
gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. v... 86 3e-015
gb|BU977317.1|BU977317 HA11D12r HA Hordeum vulgare subsp. v... 86 3e-015
gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. v... 86 3e-015
gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. v... 86 3e-015
gb|CA025276.1|CA025276 HZ51K20r HZ Hordeum vulgare subsp. v... 86 3e-015
gb|BI955535.1|BI955535 HVSMEm0023H22f Hordeum vulgare green... 84 1e-014
gb|BI957501.1|BI957501 HVSMEn0009O03f Hordeum vulgare rachi... 84 1e-014
gb|BI954845.1|BI954845 HVSMEm0020A17f Hordeum vulgare green... 82 5e-014
gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachi... 82 5e-014
gb|BI959235.1|BI959235 HVSMEn0018M17f Hordeum vulgare rachi... 82 5e-014
gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA li... 80 2e-013
gb|AL450922.1|AL450922 AL450922 Hordeum vulgare Barke etiol... 78 8e-013
gb|BI956521.1|BI956521 HVSMEn0003O13f Hordeum vulgare rachi... 78 8e-013
gb|AL504534.1|AL504534 AL504534 Hordeum vulgare Barke roots... 76 3e-012
gb|CA004555.1|CA004555 HS17P10r HS Hordeum vulgare subsp. v... 76 3e-012
gb|BI953073.1|BI953073 HVSMEm0009M16f Hordeum vulgare green... 74 1e-011
gb|BF065682.1|BF065682 HV_CEb0013G02f Hordeum vulgare seedl... 74 1e-011
gb|BJ463542.1|BJ463542 BJ463542 K. Sato unpublished cDNA li... 74 1e-011
gb|BI780485.2|BI780485 EBem08_SQ001_G14_R embryo, 40 DPA, n... 74 1e-011
gb|CA017891.1|CA017891 HV06L01r HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA020122.1|CA020122 HV14G11r HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA020280.1|CA020280 HV14N14r HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA020824.1|CA020824 HZ37P01r HZ Hordeum vulgare subsp. v... 74 1e-011
gb|CA029054.1|CA029054 HZ64B04r HZ Hordeum vulgare subsp. v... 74 1e-011
gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachi... 72 5e-011
gb|CB880402.1|CB880402 HM06G24w HM Hordeum vulgare subsp. v... 72 5e-011
gb|BI953755.1|BI953755 HVSMEm0014D01f Hordeum vulgare green... 68 7e-010
gb|AL500139.1|AL500139 AL500139 Hordeum vulgare Barke etiol... 66 3e-009
gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots... 66 3e-009
gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots... 66 3e-009
gb|AL501924.1|AL501924 AL501924 Hordeum vulgare Barke roots... 66 3e-009
gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots... 66 3e-009
gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedl... 66 3e-009
gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedl... 66 3e-009
gb|BF266762.2|BF266762 HV_CEa0015P21f Hordeum vulgare seedl... 66 3e-009
gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachi... 66 3e-009
gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachi... 66 3e-009
gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachi... 66 3e-009
gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedl... 66 3e-009
gb|BF260683.3|BF260683 HVSMEf0022K16f Hordeum vulgare seedl... 66 3e-009
gb|AJ431813.1|AJ431813 AJ431813 S00002 Hordeum vulgare subs... 66 3e-009
gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA li... 66 3e-009
gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. v... 66 3e-009
gb|BQ662110.1|BQ662110 HR01J19u HR Hordeum vulgare subsp. v... 66 3e-009
gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. v... 66 3e-009
gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hyd... 66 3e-009
gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. v... 66 3e-009
gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. v... 66 3e-009
gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. v... 66 3e-009
gb|CA017111.1|CA017111 HV14N14u HV Hordeum vulgare subsp. v... 66 3e-009
gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. v... 66 3e-009
gb|CD663835.1|CD663835 UCRHV18_06dc01_b1 Drought-stressed D... 66 3e-009
gb|BF254803.3|BF254803 HVSMEf0005B13f Hordeum vulgare seedl... 64 1e-008
gb|AW982228.3|AW982228 HVSMEg0002G09f Hordeum vulgare pre-a... 64 1e-008
gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. v... 64 1e-008
gb|CA007423.1|CA007423 HU07O17r HU Hordeum vulgare subsp. v... 62 4e-008
gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots... 60 2e-007
gb|BI959396.1|BI959396 HVSMEn0019I08f Hordeum vulgare rachi... 58 7e-007
gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedl... 58 7e-007
gb|AL501387.1|AL501387 AL501387 Hordeum vulgare Barke roots... 54 1e-005
gb|AL509899.1|AL509899 AL509899 Hordeum vulgare Barke devel... 54 1e-005
gb|BF256995.2|BF256995 HVSMEf0011J05f Hordeum vulgare seedl... 50 2e-004
gb|BG310291.2|BG310291 HVSMEc0017G05f Hordeum vulgare seedl... 50 2e-004
gb|BM444199.1|BM444199 EBem09_SQ004_H06_R embryo, 1 Day ger... 50 2e-004
gb|BQ469203.1|BQ469203 HM03L08r HM Hordeum vulgare subsp. v... 50 2e-004
gb|BM443881.2|BM443881 EBem09_SQ001_N18_R embryo, 1 Day ger... 50 2e-004
gb|BQ756029.1|BQ756029 EBem05_SQ001_F05_R embryo, 14 DPA, n... 50 2e-004
gb|CA002969.1|CA002969 HS09A14r HS Hordeum vulgare subsp. v... 50 2e-004
gb|CA025050.1|CA025050 HZ51B06r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|BG370011.2|BG370011 HVSMEi0026P07f Hordeum vulgare 20 DA... 46 0.003
gb|AL501842.1|AL501842 AL501842 Hordeum vulgare Barke roots... 44 0.010
gb|AL503273.1|AL503273 AL503273 Hordeum vulgare Barke roots... 42 0.041
gb|BG367841.1|BG367841 HVSMEi0013O18f Hordeum vulgare 20 DA... 42 0.041
gb|BI956207.1|BI956207 HVSMEn0001C02f Hordeum vulgare rachi... 42 0.041
gb|BI958598.1|BI958598 HVSMEn0015N07f Hordeum vulgare rachi... 42 0.041
gb|BF256310.3|BF256310 HVSMEf0009N11f Hordeum vulgare seedl... 42 0.041
gb|BJ464651.1|BJ464651 BJ464651 K. Sato unpublished cDNA li... 42 0.041
gb|BQ662084.1|BQ662084 HR01H17u HR Hordeum vulgare subsp. v... 42 0.041
gb|BM443303.2|BM443303 EBro02_SQ003_H23_R root, 3 week, hyd... 42 0.041
gb|BM370212.2|BM370212 EBro08_SQ003_F12_R root, 3 week, dro... 42 0.041
gb|BU994270.1|BU994270 HM06G24r HM Hordeum vulgare subsp. v... 42 0.041
gb|BM098646.2|BM098646 EBem08_SQ003_K19_R embryo, 40 DPA, n... 40 0.16
gb|CK125845.1|CK125845 BES1824111A1c09 BES1824 Hordeum vulg... 40 0.16
>gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H19f, mRNA sequence
Length = 759
Score = 704 bits (355), Expect = 0.0
Identities = 542/605 (89%)
Strand = Plus / Plus
Query: 285 aaggagctgcgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgac 344
|||||||| ||||||||||||||||| |||||||||||||||||||| || || || |||
Sbjct: 1 aaggagctccgcgagatcaccgccaaccacccatggaacctgatgacgacgtcggcggac 60
Query: 345 gagggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatc 404
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 gagggccagttcctcaacatgctgctcaagctcatcggcgccaagaagaccatggagatc 120
Query: 405 ggcgtctacaccggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacg 464
||||||||||| |||||||| || ||||||||||||||||| |||| || ||||||||
Sbjct: 121 ggcgtctacacgggctactccctgctcgccaccgcgctcgccatccccgacgacggcacc 180
Query: 465 atcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaag 524
|||||||||||||||||||||||||||||||||||||| || || || |||||| | |||
Sbjct: 181 atcttggccatggacatcaaccgcgagaactacgagctggggctgccgtgcatcgagaag 240
Query: 525 gccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgac 584
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 241 gccggcgtggcgcacaagatcgacttccgcgagggcccggcgctccccgtcctggacgcc 300
Query: 585 ctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaag 644
||| | | |||| ||| | ||||| | |||||||||| |||||||||||||||||||
Sbjct: 301 ctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtggacgccgacaag 360
Query: 645 gacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatc 704
||||||||||||| |||||||||||| ||| ||||||| || | | |||||||||| ||
Sbjct: 361 gacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtcggcggcctcctc 420
Query: 705 ggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgc 764
|||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 421 ggctacgacaacaccctctggaacggctccgtcgtgctccccgccgacgcccccatgcgc 480
Query: 765 aagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgac 824
||||||||||||| ||||||||||||||| |||| |||||||| || ||||||||||||
Sbjct: 481 aagtacatccgctactaccgcgacttcgtnctcgacctcaacaaggccctcgccgccgac 540
Query: 825 gaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtc 884
| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct: 541 cagcgcgtngagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgcc 600
Query: 885 aagtg 889
|||||
Sbjct: 601 aagtg 605
>gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_F11 5', mRNA sequence
Length = 664
Score = 636 bits (321), Expect = 0.0
Identities = 493/549 (89%), Gaps = 1/549 (0%)
Strand = Plus / Plus
Query: 342 gacgagggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggag 401
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3 gacgagggccagttcctcaacatgctgctcaagctcatcggcgccaagaagaccatggag 62
Query: 402 atcggcgtctacaccggctactcgctcctcgccaccgcgctcgcactcccggaggacggc 461
|||||||||||||| |||||||| || ||||||||||||||||| |||| || ||||||
Sbjct: 63 atcggcgtctacacgggctactccctgctcgccaccgcgctcgccatccccgacgacggc 122
Query: 462 acgatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaac 521
|| |||||||||||||||||||||||||||||||||||||| || || || |||||| |
Sbjct: 123 accatcttggccatggacatcaaccgcgagaactacgagctggggctgccgtgcatcgag 182
Query: 522 aaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggac 581
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 183 aaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctccccgtcctggac 242
Query: 582 gacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgac 641
| |||| | | |||| ||| | ||||| | |||||||||| ||||||||||||||||
Sbjct: 243 gccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtggacgccgac 302
Query: 642 aaggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctc 701
|||||||||||||||| |||||||||||| ||| ||||||| || | | ||||||||||
Sbjct: 303 aaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtcggcggcctc 362
Query: 702 atcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatg 761
|||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||
Sbjct: 363 ctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgacgcccccatg 422
Query: 762 cgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgcc 821
|||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 423 cgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggccctcgccgcc 482
Query: 822 gacgaccgcgtcgagatctgccagctccccgtc-ggcgacggcgtcacgctctgccgccg 880
||| | ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 483 gaccagcgcgtcgagatctgccagctccccgtcgggcgacggcatcaccctctgccgccg 542
Query: 881 cgtcaagtg 889
|| ||||||
Sbjct: 543 cgccaagtg 551
>gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018B24f, mRNA sequence
Length = 880
Score = 630 bits (318), Expect = e-179
Identities = 517/584 (88%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 282 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 341
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 342 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 401
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 402 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 461
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 462 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 521
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 522 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 581
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 582 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 641
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 642 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 701
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
| ||||| | |||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct: 702 aaccacggcaccttcgacttcgtcttcgtggacgccgacaaggacaactacctnaactac 761
Query: 663 cacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctg 722
|||||||| || ||||||| || | | |||||||||| |||||||||||||||| ||
Sbjct: 762 cacgagcgcctnatgaagctcgtcaaggtcggcggcctcctcggctacgacaacaccctn 821
Query: 723 tggaacggct-ccgtcgtgctccccgacgacgcgcccatgcgca 765
|||||||| | ||| ||||||||| |||||| || |||||||
Sbjct: 822 tggaacggntnncgtngtgctcccccgcgacgccccaatgcgca 865
>gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011I21f, mRNA sequence
Length = 736
Score = 626 bits (316), Expect = e-178
Identities = 500/560 (89%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 177 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 236
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 237 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 296
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 297 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 356
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 357 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 416
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 417 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 476
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 477 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 536
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| | |
Sbjct: 537 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaaggc 596
Query: 603 cagcacgg-gtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagcta 661
|| ||||| | |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 597 caccacggcacctttcgacttcgtcttcgtggacgccgacaaggacaactacctcaacta 656
Query: 662 ccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||||||||| ||| ||||||| || | | ||||||||| |||||||||||||||| ||
Sbjct: 657 ccacgagcgcctcatgaagctcgtcaaggtcggcggccttctcggctacgacaacaccct 716
Query: 722 gtggaacggctccgtcgtgc 741
| |||||||||||||||||
Sbjct: 717 cttgaacggctccgtcgtgc 736
>gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E18f, mRNA sequence
Length = 637
Score = 618 bits (312), Expect = e-176
Identities = 487/544 (89%), Gaps = 1/544 (0%)
Strand = Plus / Plus
Query: 346 agggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcg 405
|||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggccagttccgca-catgctgctcaagctcatcggcgccaagaagaccatggagatcg 59
Query: 406 gcgtctacaccggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacga 465
|||||||||| |||||||| || ||||||||||||||||| |||| || |||||||| |
Sbjct: 60 gcgtctacacgggctactccctgctcgccaccgcgctcgccatccccgacgacggcacca 119
Query: 466 tcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaagg 525
||||||||||||||||||||||||||||||||||||| || || || |||||| | ||||
Sbjct: 120 tcttggccatggacatcaaccgcgagaactacgagctggggctgccgtgcatcgagaagg 179
Query: 526 ccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacc 585
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 180 ccggcgtggcgcacaagatcgacttccgcgagggcccggcgctccccgtcctggacgccc 239
Query: 586 tcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaagg 645
|| | | |||| ||| | ||||| | |||||||||| ||||||||||||||||||||
Sbjct: 240 tcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtggacgccgacaagg 299
Query: 646 acaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcg 705
|||||||||||| |||||||||||| ||| ||||||| || | | |||||||||| |||
Sbjct: 300 acaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtcggcggcctcctcg 359
Query: 706 gctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgca 765
||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 360 gctacgacaacaccctctggaacggctccgtcgtgctccccgccgacgcccccatgcgca 419
Query: 766 agtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacg 825
|||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 420 agtacatccgctactaccgcgacttcgtcctcgacctcaacaaggccctcgccgccgacc 479
Query: 826 accgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtca 885
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 480 agcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgcca 539
Query: 886 agtg 889
||||
Sbjct: 540 agtg 543
>gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_I06 5', mRNA sequence
Length = 673
Score = 595 bits (300), Expect = e-168
Identities = 441/488 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 179 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 238
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 239 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 298
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 299 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 358
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 418
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 419 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 478
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 479 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 538
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 539 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 598
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
| ||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 599 aaccacggcaccttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactac 658
Query: 663 cacgagcg 670
||||||||
Sbjct: 659 cacgagcg 666
>gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
5-PRIME, mRNA sequence
Length = 670
Score = 595 bits (300), Expect = e-168
Identities = 441/488 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 182 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 241
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 242 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 301
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 302 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 361
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 421
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 422 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 481
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 482 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 541
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 542 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 601
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
| ||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 602 aaccacggcaccttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactac 661
Query: 663 cacgagcg 670
||||||||
Sbjct: 662 cacgagcg 669
>gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024P05f, mRNA sequence
Length = 655
Score = 589 bits (297), Expect = e-167
Identities = 440/488 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 167 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 226
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 227 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 286
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 287 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 346
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 406
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 407 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 466
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 467 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 526
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 527 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 586
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
| ||||| | |||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 587 aaccacggcaccttcgacttcgtcttcgtggacgccgacanggacaactacctcaactac 646
Query: 663 cacgagcg 670
||||||||
Sbjct: 647 cacgagcg 654
>gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010H17f, mRNA sequence
Length = 652
Score = 577 bits (291), Expect = e-163
Identities = 429/475 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 174 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 233
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 234 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 293
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 294 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 353
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 354 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 413
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 414 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 473
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 474 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 533
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 534 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 593
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctca 657
| ||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 aaccacggcaccttcgacttcgtcttcgtggacgccgacaaggacaactacctca 648
>gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
5-PRIME, mRNA sequence
Length = 649
Score = 569 bits (287), Expect = e-161
Identities = 425/471 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 179 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 238
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 239 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 298
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 299 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 358
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 418
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 419 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 478
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 479 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 538
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 539 atcgacttccgcgagggcccggcgctccccgtcctggacgccctcctcgaggacgaggcc 598
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
| ||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 599 aaccacggcaccttcgacttcgtcttcgtggacgccgacaaggacaactac 649
>gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28c08 5', mRNA sequence
Length = 509
Score = 569 bits (287), Expect = e-161
Identities = 443/495 (89%)
Strand = Plus / Plus
Query: 342 gacgagggccagttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggag 401
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 gacgagggccagttcctcaacatgctgctcaagctcatcggcgccaagaagaccatggag 74
Query: 402 atcggcgtctacaccggctactcgctcctcgccaccgcgctcgcactcccggaggacggc 461
|||||||||||||| |||||||| || ||||||||||||||||| |||| || ||||||
Sbjct: 75 atcggcgtctacacgggctactccctgctcgccaccgcgctcgccatccccgacgacggc 134
Query: 462 acgatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaac 521
|| |||||||||||||||||||||||||||||||||||||| || || || |||||| |
Sbjct: 135 accatcttggccatggacatcaaccgcgagaactacgagctggggctgccgtgcatcgag 194
Query: 522 aaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggac 581
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 195 aaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctccccgtcctggac 254
Query: 582 gacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgac 641
| |||| | | |||| ||| | ||||| | |||||||||| ||||||||||||||||
Sbjct: 255 gccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtggacgccgac 314
Query: 642 aaggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctc 701
|||||||||||||||| |||||||||||| ||| ||||||| || | | ||||||||||
Sbjct: 315 aaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtcggcggcctc 374
Query: 702 atcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatg 761
|||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||
Sbjct: 375 ctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgacgcccccatg 434
Query: 762 cgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgcc 821
|||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 435 cgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggccctcgccgcc 494
Query: 822 gacgaccgcgtcgag 836
||| | |||||||||
Sbjct: 495 gaccagcgcgtcgag 509
>gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024O24f, mRNA sequence
Length = 631
Score = 539 bits (272), Expect = e-152
Identities = 413/460 (89%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 162 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 221
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 222 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 281
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 282 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 341
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 342 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 401
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 402 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 461
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 462 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 521
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggag 602
|||||||||||||||||||| ||||||||||||||||||| |||| | | |||| |||
Sbjct: 522 atcgacttccgcgagggccctgcgctccccgtcctggacgccctcctcgaggacgaggcc 581
Query: 603 cagcacgggtcgttcgacttcgccttcgtggacgccgaca 642
| ||||| | |||||||||| |||||||||||| ||||
Sbjct: 582 aaccacggcaccttcgacttcgtcttcgtggacgcggaca 621
>gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016L12f, mRNA sequence
Length = 649
Score = 533 bits (269), Expect = e-150
Identities = 420/469 (89%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 194 cgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtacatcctggacac 253
||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct: 182 cgaggtcggacacaagagcctgctccagagcgacgccctctaccagtacatcctggagac 241
Query: 254 gagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatcaccgccaagca 313
||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 242 gagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatcaccgccaacca 301
Query: 314 cccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaa 373
|||||||||||||||||| || || || |||||||||||||||||||||||||| ||||
Sbjct: 302 cccatggaacctgatgacgacgtcggcggacgagggccagttcctcaacatgctgctcaa 361
Query: 374 gctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgc 433
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 362 gctcatcggcgccaagaagaccatggagatcggcgtctacacgggctactccctgctcgc 421
Query: 434 caccgcgctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaa 493
|||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 422 caccgcgctcgccatccccgacgacggcaccatcttggccatggacatcaaccgcgagaa 481
Query: 494 ctacgagctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccg 553
||||||||| || || || |||||| | ||||||||||||| |||||||||||||||||
Sbjct: 482 ctacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaagatcgacttccg 541
Query: 554 cgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtc 613
||||||||| ||||||||||||||||||| |||| | | ||| ||| | ||||| |
Sbjct: 542 cgagggcccggcgctccccgtcctggacgccctcctcggagacgaggccaaccacggcac 601
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctac 662
|||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct: 602 cttcgacttcgtcttcgtggacgccgac-aggacaactacctcaactac 649
>gb|BI954074.1|BI954074 HVSMEm0016B12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016B12f, mRNA sequence
Length = 671
Score = 511 bits (258), Expect = e-143
Identities = 366/401 (91%), Gaps = 1/401 (0%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 243 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 302
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 303 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 362
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 363 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 422
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 423 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 482
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 483 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 542
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 543 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 602
Query: 543 atcgacttccgcgagggcccc-gcgctccccgtcctggacg 582
|||||||| |||||||||||| | |||||||||||||||||
Sbjct: 603 atcgacttncgcgagggccccggggctccccgtcctggacg 643
>gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007J15f, mRNA sequence
Length = 491
Score = 509 bits (257), Expect = e-143
Identities = 368/405 (90%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 41 acgcgccgctccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 100
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||| | ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 101 atcctgaagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 160
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||| ||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 161 accgtcaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 220
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 221 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 280
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 281 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 340
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaag 542
|||||||||||||||||||| || || || |||||| | ||||||||||||| ||||||
Sbjct: 341 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaag 400
Query: 543 atcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
|||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 401 atcgacttccgcgagggcccggcgctccccgtcctggacgccctc 445
>gb|BU994274.1|BU994274 HM06H04r HM Hordeum vulgare subsp. vulgare cDNA clone HM06H04
5-PRIME, mRNA sequence
Length = 598
Score = 460 bits (232), Expect = e-128
Identities = 322/352 (91%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 244 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 303
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 304 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 363
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 364 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 423
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 424 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcgtctacacgggctac 483
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 484 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 543
Query: 483 aaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgg 534
|||||||||||||||||||| || || || |||||| | |||||||||||||
Sbjct: 544 aaccgcgagaactacgagctggggctgccgtgcatcgagaaggccggcgtgg 595
>gb|BQ754341.1|BQ754341 EBca01_SQ003_K07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_K07 5', mRNA sequence
Length = 489
Score = 424 bits (214), Expect = e-117
Identities = 285/309 (92%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 181 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 240
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 241 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 300
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 301 accgccaaccacccatggaacctgatgacgacgtcngcggacgagggccagttcctcaac 360
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 361 atgctgctcaagctcatcggccccaagaagaccatggagatcggcgtctacacgggctac 420
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct: 421 tccctgctcgccaccgcgctcgccatcccggacgacggcaccatcttggccatggacatc 480
Query: 483 aaccgcgag 491
|||||||||
Sbjct: 481 aaccgcgag 489
>gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. vulgare cDNA clone HX08G19
5-PRIME, mRNA sequence
Length = 577
Score = 424 bits (214), Expect = e-117
Identities = 349/394 (88%)
Strand = Plus / Minus
Query: 496 acgagctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcg 555
||||||| || || || |||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 577 acgagctggggctgccgtgcatcgagaaggccggcgtggcgcacaagatcgacttccgcg 518
Query: 556 agggccccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgt 615
||||||| ||||||||||||||||||| |||| | | |||| ||| | ||||| | |
Sbjct: 517 agggcccggcgctccccgtcctggacgccctcctcgaggacgaggccaaccacggcacct 458
Query: 616 tcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcc 675
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 457 tcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccacgagcgcctca 398
Query: 676 tgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctccg 735
||||||| || | | |||||||||| |||||||||||||||| || |||||||||||||
Sbjct: 397 tgaagctcgtcaaggtcggcggcctcctcggctacgacaacaccctctggaacggctccg 338
Query: 736 tcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcc 795
|||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 337 tcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtcc 278
Query: 796 tcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcg 855
||| |||||||| || |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 277 tcgacctcaacaaggccctcgccgccgaccagcgcgtcgagatctgccagctccccgtcg 218
Query: 856 gcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||| |||| ||||||||||||| ||||||
Sbjct: 217 gcgacggcatcaccctctgccgccgcgccaagtg 184
>gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024D19f, mRNA sequence
Length = 591
Score = 422 bits (213), Expect = e-116
Identities = 336/377 (89%)
Strand = Plus / Plus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 7 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctcccc 66
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|||||||||| |||| | | |||| ||| | ||||| | |||||||||| |||||||
Sbjct: 67 gtcctggacgccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtg 126
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| |||||||||||| ||| ||||||| || | | |
Sbjct: 127 gacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtc 186
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 187 ggcggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgac 246
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 247 gcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggcc 306
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 307 ctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 366
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 367 tgccgccgcgccaagtg 383
>gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B18
5-PRIME, mRNA sequence
Length = 593
Score = 422 bits (213), Expect = e-116
Identities = 336/377 (89%)
Strand = Plus / Plus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 17 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctcccc 76
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|||||||||| |||| | | |||| ||| | ||||| | |||||||||| |||||||
Sbjct: 77 gtcctggacgccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtg 136
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| |||||||||||| ||| ||||||| || | | |
Sbjct: 137 gacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtc 196
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 197 ggcggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgac 256
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 257 gcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggcc 316
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 317 ctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 376
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 377 tgccgccgcgccaagtg 393
>gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. vulgare cDNA clone HA15J22
5-PRIME, mRNA sequence
Length = 507
Score = 422 bits (213), Expect = e-116
Identities = 336/377 (89%)
Strand = Plus / Plus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 17 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctcccc 76
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|||||||||| |||| | | |||| ||| | ||||| | |||||||||| |||||||
Sbjct: 77 gtcctggacgccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtg 136
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| |||||||||||| ||| ||||||| || | | |
Sbjct: 137 gacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtc 196
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 197 ggcggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgac 256
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 257 gcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggcc 316
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 317 ctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 376
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 377 tgccgccgcgccaagtg 393
>gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
3-PRIME, mRNA sequence
Length = 549
Score = 422 bits (213), Expect = e-116
Identities = 336/377 (89%)
Strand = Plus / Minus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 542 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctcccc 483
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|||||||||| |||| | | |||| ||| | ||||| | |||||||||| |||||||
Sbjct: 482 gtcctggacgccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtg 423
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| |||||||||||| ||| ||||||| || | | |
Sbjct: 422 gacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtc 363
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 362 ggcggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgac 303
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 302 gcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggcc 243
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 242 ctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 183
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 182 tgccgccgcgccaagtg 166
>gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
3-PRIME, mRNA sequence
Length = 552
Score = 416 bits (210), Expect = e-115
Identities = 335/377 (88%)
Strand = Plus / Minus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 540 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggcccggcgctcccc 481
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|||||||||| |||| | | |||| ||| | ||||| | |||||||||| |||||||
Sbjct: 480 gtcctggacgccctcctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtg 421
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| |||||||||||| ||| ||||||| || | | |
Sbjct: 420 gacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtcaaggtc 361
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||| ||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 360 ggcggcctcctcggntacgacaacaccctctggaacggctccgtcgtgctccccgccgac 301
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 300 gcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggcc 241
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 240 ctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 181
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 180 tgccgccgcgccaagtg 164
>gb|BM097007.2|BM097007 EBpi07_SQ002_B16_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_B16 5', mRNA sequence
Length = 504
Score = 375 bits (189), Expect = e-102
Identities = 291/320 (90%), Gaps = 5/320 (1%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 176 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 235
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| |||||||| |||| || ||||||
Sbjct: 236 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaag-agct-cg-gagatc 292
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
||||| | |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 293 accgc--accacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 350
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctac 422
||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 351 atgctgctcaagctcatcggcgccaagaagaccatgcagatcggcgtctacacgggctac 410
Query: 423 tcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatc 482
|| || ||||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 411 tccctgctcgccaccgcgctcgccatccccgacgacggcaccatcttggccatggacatc 470
Query: 483 aaccgcgagaactacgagct 502
||||||||||||||||||||
Sbjct: 471 aaccgcgagaactacgagct 490
>gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_E22 5', mRNA sequence
Length = 425
Score = 355 bits (179), Expect = 2e-096
Identities = 251/275 (91%)
Strand = Plus / Plus
Query: 615 ttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctc 674
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 8 ttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccacgagcgcctc 67
Query: 675 ctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctcc 734
||||||| || | | |||||||||| |||||||||||||||| || ||||||||||||
Sbjct: 68 atgaagctcgtcaaggtcggcggcctcctcggctacgacaacaccctctggaacggctcc 127
Query: 735 gtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtc 794
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 128 gtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtc 187
Query: 795 ctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtc 854
|||| |||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 188 ctcgacctcaacaaggccctcgccgccgaccagcgcgtcgagatctgccagctccccgtc 247
Query: 855 ggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||| |||| ||||||||||||| ||||||
Sbjct: 248 ggcgacggcatcaccctctgccgccgcgccaagtg 282
>gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. vulgare cDNA clone HS17P10
3-PRIME, mRNA sequence
Length = 423
Score = 355 bits (179), Expect = 2e-096
Identities = 251/275 (91%)
Strand = Plus / Minus
Query: 615 ttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctc 674
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 420 ttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccacgagcgcctc 361
Query: 675 ctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctcc 734
||||||| || | | |||||||||| |||||||||||||||| || ||||||||||||
Sbjct: 360 atgaagctcgtcaaggtcggcggcctcctcggctacgacaacaccctctggaacggctcc 301
Query: 735 gtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtc 794
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 300 gtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtc 241
Query: 795 ctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtc 854
|||| |||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 240 ctcgacctcaacaaggccctcgccgccgaccagcgcgtcgagatctgccagctccccgtc 181
Query: 855 ggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||| |||| ||||||||||||| ||||||
Sbjct: 180 ggcgacggcatcaccctctgccgccgcgccaagtg 146
>gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. vulgare cDNA clone HM06H04
3-PRIME, mRNA sequence
Length = 492
Score = 355 bits (179), Expect = 2e-096
Identities = 251/275 (91%)
Strand = Plus / Minus
Query: 615 ttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctc 674
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 480 ttcgacttcgtcttcgtggacgccgacaaggacaactacctcaactaccacgagcgcctc 421
Query: 675 ctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctcc 734
||||||| || | | |||||||||| |||||||||||||||| || ||||||||||||
Sbjct: 420 atgaagctcgtcaaggtcggcggcctcctcggctacgacaacaccctctggaacggctcc 361
Query: 735 gtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtc 794
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 gtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtc 301
Query: 795 ctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtc 854
|||| |||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct: 300 ctcgacctcaacaaggccctcgccgccgaccagcgcgtcgagatctgccagctccccgtc 241
Query: 855 ggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||| |||| ||||||||||||| ||||||
Sbjct: 240 ggcgacggcatcaccctctgccgccgcgccaagtg 206
>gb|BI956599.1|BI956599 HVSMEn0004F14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004F14f, mRNA sequence
Length = 819
Score = 349 bits (176), Expect = 1e-094
Identities = 352/408 (86%), Gaps = 2/408 (0%)
Strand = Plus / Plus
Query: 182 gacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgac-ctctaccagt 240
||||||||||||| ||||||| |||||||||||||| |||||||| | ||||||||||
Sbjct: 171 gacgcgccactcccaggtcggacacaagagcctgctacagagcgactccactctaccagt 230
Query: 241 acatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgaga 300
|||||||||| || ||||||||||| | |||| || |||||||||| || ||| | |
Sbjct: 231 acatcctggagacaagcgtgtaccctcacgagcaccagtgcatgaaggaactccgccaaa 290
Query: 301 tcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctca 360
|||||| ||| |||||||||||||||||||| || || | ||||| |||||||| ||||
Sbjct: 291 tcaccggcaaccacccatggaacctgatgactacatcaggggacgatggccagttactca 350
Query: 361 acatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggct 420
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 351 acatgcggctcaagctgatcggcgccaagaagaccatggagatcggcgtctacacgggct 410
Query: 421 actcgctcctcgc-caccgcgctcgcactcccggaggacggcacgatcttggccatggac 479
||||||| ||||| ||||| ||||| |||| || ||||| || |||||||||||||||
Sbjct: 411 actcgctgctcgctcaccgagctcgacatccccgacgacgggaccatcttggccatggac 470
Query: 480 atcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccac 539
||||||||| ||||||||||||| || || || |||||| ||||||||||||||| |||
Sbjct: 471 atcaaccgctagaactacgagctggggctgccgtgcatctacaaggccggcgtggcgcac 530
Query: 540 aagatcgacttccgcgagggccccgcgctccccgtcctggacgacctc 587
|||||||||| || ||||||||| ||||||||||||||||||| ||||
Sbjct: 531 aagatcgactaccacgagggcccggcgctccccgtcctggacgccctc 578
>gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28c08 3', mRNA sequence
Length = 422
Score = 339 bits (171), Expect = 1e-091
Identities = 240/263 (91%)
Strand = Plus / Minus
Query: 627 ttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtg 686
||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||
Sbjct: 422 ttcgtggacgccgacaaggacaactacctcaactaccacgagcgcctcatgaagctcgtc 363
Query: 687 aggcccggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctcccc 746
| | |||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 362 aaggtcggcggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctcccc 303
Query: 747 gacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaac 806
| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 302 gccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaac 243
Query: 807 agcgcgctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtc 866
| || |||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 242 aaggccctcgccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatc 183
Query: 867 acgctctgccgccgcgtcaagtg 889
|| ||||||||||||| ||||||
Sbjct: 182 accctctgccgccgcgccaagtg 160
>gb|CA028078.1|CA028078 HZ60O17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60O17
5-PRIME, mRNA sequence
Length = 413
Score = 321 bits (162), Expect = 3e-086
Identities = 210/226 (92%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 188 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 247
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 248 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 307
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 308 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 367
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagatcggcg 408
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgctgctcaagctcatcggcgccaagaagaccatggagatcggcg 413
>gb|CA024014.1|CA024014 HZ48B24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48B24
5-PRIME, mRNA sequence
Length = 397
Score = 311 bits (157), Expect = 3e-083
Identities = 205/221 (92%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 177 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 236
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 237 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 296
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 297 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 356
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggagat 403
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 357 atgctgctcaagctcatcggcgccaagaagaccatggagat 397
>gb|BI780660.2|BI780660 EBes01_SQ001_K19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_K19 5', mRNA sequence
Length = 374
Score = 307 bits (155), Expect = 4e-082
Identities = 203/219 (92%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 156 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 215
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 216 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcgagatc 275
Query: 303 accgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaac 362
|||||||| |||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 276 accgccaaccacccatggaacctgatgacgacgtcggcggacgagggccagttcctcaac 335
Query: 363 atgctcatcaagctcatcggcgccaagaagaccatggag 401
||||| ||||||||||||||||||||||||||||||||
Sbjct: 336 atgctgctcaagctcatcggcgccaagaagaccatggag 374
>gb|BE602379.3|BE602379 HVSMEh0098L05f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098L05f, mRNA sequence
Length = 409
Score = 266 bits (134), Expect = 2e-069
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 696 ggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcg 755
|||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 16 ggcctcctcggctacgacaacaccctctggaacggctccgtcgtgctccccgccgacgcc 75
Query: 756 cccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctc 815
|||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct: 76 cccatgcgcaagtacatccgctactaccgcgacttcgtcctcgacctcaacaaggccctc 135
Query: 816 gccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgc 875
||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 136 gccgccgaccagcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgc 195
Query: 876 cgccgcgtcaagtg 889
||||||| ||||||
Sbjct: 196 cgccgcgccaagtg 209
>gb|BF065210.2|BF065210 HV_CEb0024C21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024C21f, mRNA sequence
Length = 839
Score = 208 bits (105), Expect = 3e-052
Identities = 174/197 (88%)
Strand = Plus / Minus
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| |||| ||||||||||| || |||||||| |||||||||||||||| ||||
Sbjct: 419 ggcggcctcctcggttacgacaacaccctctggaacggttccgtcgtgctccccgccgac 360
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| ||||| ||||| ||||| | |||||||| ||
Sbjct: 359 gcccccatgcgcaagtacatccgctagtaccgagactttgtccttgacctcaacaaggcc 300
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 299 cttgccgccgaccagcgcgtcgagatttgccagctccccgtcggcgacggcatcaccctc 240
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 239 tgccgccgcgccaagtg 223
>gb|BQ753902.1|BQ753902 EBca01_SQ002_D12_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_D12 5', mRNA sequence
Length = 321
Score = 196 bits (99), Expect = 1e-048
Identities = 132/143 (92%)
Strand = Plus / Plus
Query: 183 acgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctaccagtac 242
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 179 acgcgccactccgaggtcggacacaagagcctgctccagagcgacgccctctaccagtac 238
Query: 243 atcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcgagatc 302
|||||||| ||||||||||||||||| |||| ||| ||||||| ||||| |||||||||
Sbjct: 239 atcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaagagctccgcgagatc 298
Query: 303 accgccaagcacccatggaacct 325
|||||||| ||||||||||||||
Sbjct: 299 accgccaaccacccatggaacct 321
>gb|BJ545234.1|BJ545234 BJ545234 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46l01 5', mRNA sequence
Length = 337
Score = 170 bits (86), Expect = 7e-041
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 760 tgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccg 819
|||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||
Sbjct: 14 tgcgcaagtacatccgctactaccgcgacttcgtcctcgagctcaacaaggccctcgccg 73
Query: 820 ccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgcc 879
||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 74 ccgaccaacgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgcc 133
Query: 880 gcgtcaagtg 889
||| ||||||
Sbjct: 134 gcgccaagtg 143
>gb|BJ546714.1|BJ546714 BJ546714 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46l01 3', mRNA sequence
Length = 286
Score = 170 bits (86), Expect = 7e-041
Identities = 119/130 (91%)
Strand = Plus / Minus
Query: 760 tgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccg 819
|||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||
Sbjct: 285 tgcgcaagtacatccgctactaccgcgacttcgtcctcgagctcaacaaggccctcgccg 226
Query: 820 ccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgcc 879
||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 225 ccgaccaacgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgcc 166
Query: 880 gcgtcaagtg 889
||| ||||||
Sbjct: 165 gcgccaagtg 156
>gb|BM928851.1|BM928851 LP20008 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-8
similar to Caffeoyl CoA O-methyl transferase, mRNA
sequence
Length = 217
Score = 151 bits (76), Expect = 6e-035
Identities = 111/123 (90%)
Strand = Plus / Plus
Query: 767 gtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacga 826
|||||| |||| ||||||||||||| |||||| |||||||| || |||||||||||| |
Sbjct: 1 gtacattcgctactaccgcgacttcntcctcgacctcaacaaggccctcgccgccgacca 60
Query: 827 ccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaa 886
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct: 61 gcgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgccaa 120
Query: 887 gtg 889
|||
Sbjct: 121 gtg 123
>gb|BQ756877.1|BQ756877 EBem09_SQ005_A16_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_A16 5', mRNA sequence
Length = 97
Score = 129 bits (65), Expect = 2e-028
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 695 cggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgc 754
||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 1 cggcctcctcggctacgacaacaccctatggaacggctccgtcgtgctccccgccgacgc 60
Query: 755 gcccatgcgcaagtacatccgcttctaccgcgacttc 791
||||| ||||||||||||||| |||||||||||||
Sbjct: 61 ccccatttgcaagtacatccgctactaccgcgacttc 97
>gb|CD663691.1|CD663691 UCRHV18_06bd02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd02, mRNA sequence
Length = 320
Score = 115 bits (58), Expect = 3e-024
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 792 gtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctcccc 851
||||||| |||||||| || |||||||||||| | ||||| ||||||||||||||||||
Sbjct: 312 gtcctcgacctcaacaaggccctcgccgccgaccagcgcgtggagatctgccagctcccc 253
Query: 852 gtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||| |||| ||||||||||||| ||||||
Sbjct: 252 gtcggcgacggcatcaccctctgccgccgcgccaagtg 215
>gb|AL505702.1|AL505702 AL505702 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09E08V 5', mRNA sequence
Length = 500
Score = 99.6 bits (50), Expect = 2e-019
Identities = 148/181 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 306 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 365
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 366 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 425
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggcccc 563
|||| |||| |||| | ||||||||| ||| |||||| | ||||||||||||||| ||
Sbjct: 426 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggcncc 485
Query: 564 g 564
|
Sbjct: 486 g 486
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 135 ctgctcaagagcgacgccctctacacctacatcctcgacac 175
>gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24T 5', mRNA sequence
Length = 700
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 293 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 352
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 353 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 412
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 413 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 469
Score = 65.9 bits (33), Expect = 3e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 526 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 585
Query: 677 gaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
| ||||||| | ||||||| |||| |||||||||||||||
Sbjct: 586 gcggctggtgcgcgtcggcggcaccatcatctacgacaacacgct 630
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 122 ctgctcaagagcgacgccctctacacctacatcctcgacac 162
>gb|AL504625.1|AL504625 AL504625 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05N15V 5', mRNA sequence
Length = 666
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 284 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 343
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 344 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 403
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 404 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 460
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagc 669
||||||||| |||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 517 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagc 569
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 113 ctgctcaagagcgacgccctctacacctacatcctcgacac 153
>gb|BF624013.2|BF624013 HVSMEa0008J18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008J18f, mRNA sequence
Length = 508
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 293 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 352
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 353 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 412
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 413 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 469
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 122 ctgctcaagagcgacgccctctacacctacatcctcgacac 162
>gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009A08f, mRNA sequence
Length = 804
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 300 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 359
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 360 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 419
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 420 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 476
Score = 65.9 bits (33), Expect = 3e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 533 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 592
Query: 677 gaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
| ||||||| | ||||||| |||| |||||||||||||||
Sbjct: 593 gcggctggtgcgcgtcggcggcaccatcatctacgacaacacgct 637
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 129 ctgctcaagagcgacgccctctacacctacatcctcgacac 169
>gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015B13f, mRNA sequence
Length = 706
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 290 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 349
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 350 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 409
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 410 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 466
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 523 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 582
Query: 677 gaagctggtg 686
| |||||||
Sbjct: 583 gcggctggtg 592
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 119 ctgctcaagagcgacgccctctacacctacatcctcgacac 159
>gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018K06f, mRNA sequence
Length = 749
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 285 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 344
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 345 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 404
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 405 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 461
Score = 65.9 bits (33), Expect = 3e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 518 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 577
Query: 677 gaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
| ||||||| | ||||||| |||| |||||||||||||||
Sbjct: 578 gcggctggtgcgcgtcggcggcaccatcatctacgacaacacgct 622
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 114 ctgctcaagagcgacgccctctacacctacatcctcgacac 154
>gb|BG299397.1|BG299397 HVSMEa0019M12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019M12f, mRNA sequence
Length = 627
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 300 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 359
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 360 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 419
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 420 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 476
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactac 653
||||||||| |||||||||||||||||| |||||||
Sbjct: 533 cgacttcgcgttcgtggacgccgacaagcccaactac 569
Score = 48.1 bits (24), Expect = 7e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacacgagcgtgtacccgcgggag 272
|||||||||||||||| ||||||| |||||||| ||||| | ||||| ||| || |||
Sbjct: 129 ctgctcaagagcgacgccctctacacctacatcctcgacaccaccgtgttcccccgcgag 188
Query: 273 ccggagagcatgaaggagctgcgcgagatcaccgccaagcaccc 316
| ||| ||||| || |||||| |||||||| |||||||||
Sbjct: 189 cacgagtgcatgcgcgacctgcgcctgatcaccgacaagcaccc 232
>gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013N02f, mRNA sequence
Length = 756
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 50 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 109
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 110 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 169
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 170 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 226
Score = 65.9 bits (33), Expect = 3e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| ||||| ||||||||||| || ||| |||||||||||| |
Sbjct: 478 gctcgccgccgacccgcgcatcgaggtctgccagctcgccatcgccgacggcgtcaccat 537
Query: 872 ctgccgccgcgtc 884
|||||||||||||
Sbjct: 538 ctgccgccgcgtc 550
Score = 65.9 bits (33), Expect = 3e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 283 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 342
Query: 677 gaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
| ||||||| | ||||||| |||| |||||||||||||||
Sbjct: 343 gcggctggtgcgcgtcggcggcaccatcatctacgacaacacgct 387
>gb|BI956791.1|BI956791 HVSMEn0005F21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005F21f, mRNA sequence
Length = 930
Score = 97.6 bits (49), Expect = 8e-019
Identities = 145/177 (81%)
Strand = Plus / Plus
Query: 384 gccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcgctc 443
||||||||||| || ||| | ||||| | ||| ||||||||||| || |||||||||||
Sbjct: 293 gccaagaagacgatcgaggtgggcgtgttcacgggctactcgctgctggccaccgcgctg 352
Query: 444 gcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgagcta 503
|| ||||| |||||||||| |||| ||||||| |||| | |||| ||| ||||||| |
Sbjct: 353 gcgctccccgaggacggcaagatcgtggccatcgacaccgaccgtgagtgctacgaggtg 412
Query: 504 ggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|||| |||| |||| | ||||||||| ||| |||||| | |||||||||||||||
Sbjct: 413 ggccgccccttcatcgagaaggccggcatggcgcacaaggtggacttccgcgagggc 469
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 617 cgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcct 676
||||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||
Sbjct: 526 cgacttcgcgttcgtggacgccgacaagcccaactacgtgcgctaccacgagcagctgct 585
Query: 677 gaagctggtg 686
| |||||||
Sbjct: 586 gcggctggtg 595
Score = 42.1 bits (21), Expect = 0.041
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacac 253
|||||||||||||||| ||||||| |||||||| |||||
Sbjct: 122 ctgctcaagagcgacgccctctacacctacatcctcgacac 162
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,427
Number of Sequences: 312970
Number of extensions: 192427
Number of successful extensions: 60998
Number of sequences better than 0.5: 199
Number of HSP's better than 0.5 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60430
Number of HSP's gapped (non-prelim): 512
length of query: 1190
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1171
effective length of database: 169,188,109
effective search space: 198119275639
effective search space used: 198119275639
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)