BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, sal... 242 1e-062
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 238 2e-061
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 238 2e-061
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 216 8e-055
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 216 8e-055
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 216 8e-055
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 214 3e-054
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 208 2e-052
gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, wat... 167 7e-040
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 161 4e-038
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 159 2e-037
gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. v... 105 2e-021
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 92 3e-017
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 92 3e-017
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 92 3e-017
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 92 3e-017
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 92 3e-017
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 92 3e-017
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 92 3e-017
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 92 3e-017
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 92 3e-017
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 92 3e-017
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 92 3e-017
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 92 3e-017
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 92 3e-017
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 92 3e-017
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 92 3e-017
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 92 3e-017
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 92 3e-017
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 92 3e-017
gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA li... 86 2e-015
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 84 8e-015
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 84 8e-015
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 82 3e-014
gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA li... 78 5e-013
gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA li... 78 5e-013
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 68 5e-010
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 68 5e-010
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 68 5e-010
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 68 5e-010
gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. v... 68 5e-010
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 68 5e-010
gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. v... 68 5e-010
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 68 5e-010
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 68 5e-010
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 66 2e-009
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 66 2e-009
gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiol... 54 7e-006
gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA li... 54 7e-006
gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, dro... 54 7e-006
gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Libr... 52 3e-005
gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA li... 50 1e-004
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 46 0.002
gb|BF624089.2|BF624089 HVSMEa0009G06f Hordeum vulgare seedl... 46 0.002
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 46 0.002
gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedl... 46 0.002
gb|BE060552.2|BE060552 HVSMEg0012J20f Hordeum vulgare pre-a... 46 0.002
gb|BI960618.1|BI960618 HVSMEn0025G09f Hordeum vulgare rachi... 46 0.002
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 46 0.002
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 46 0.002
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 46 0.002
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 46 0.002
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 46 0.002
gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare su... 46 0.002
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 46 0.002
gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subs... 46 0.002
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 46 0.002
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 46 0.002
gb|BQ460689.1|BQ460689 HA06D17r HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. v... 46 0.002
gb|BQ467998.1|BQ467998 HR01J18r HR Hordeum vulgare subsp. v... 46 0.002
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 46 0.002
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 46 0.002
gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day ger... 46 0.002
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 46 0.002
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 46 0.002
gb|BQ762274.1|BQ762274 EBro01_SQ005_G12 _R root, 3 week, hy... 46 0.002
gb|BU997685.1|BU997685 HI08L09r HI Hordeum vulgare subsp. v... 46 0.002
gb|BU997928.1|BU997928 HI09H06r HI Hordeum vulgare subsp. v... 46 0.002
gb|CA007079.1|CA007079 HU06K21r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 46 0.002
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 46 0.002
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 46 0.002
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 46 0.002
gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachi... 44 0.007
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 40 0.10
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 40 0.10
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 40 0.10
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 40 0.10
gb|BQ764817.1|BQ764817 EBca01_SQ005_A06_R carpel, pre-anthe... 40 0.10
gb|CA027653.1|CA027653 HZ59J16r HZ Hordeum vulgare subsp. v... 40 0.10
gb|BG300048.1|BG300048 HVSMEb0011C24f Hordeum vulgare seedl... 38 0.41
gb|BI956709.1|BI956709 HVSMEn0004O06f Hordeum vulgare rachi... 38 0.41
gb|BI957177.1|BI957177 HVSMEn0007P14f Hordeum vulgare rachi... 38 0.41
gb|BI778106.2|BI778106 EBro07_SQ002_D23_R root, 3 week, red... 38 0.41
>gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_B07 5', mRNA sequence
Length = 465
Score = 242 bits (122), Expect = 1e-062
Identities = 262/308 (85%), Gaps = 3/308 (0%)
Strand = Plus / Minus
Query: 328 atcagtggcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagt 387
|||||| |||| |||||||||||||| || || |||||||| | ||||| |||||
Sbjct: 305 atcagtagcggctgcactcggcggggaacccctgtgggaacctgtagccatctgcgcagt 246
Query: 388 agttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaa 447
|||||||||||||| | || ||||||||||| |||||||||||||||||| || ||| |
Sbjct: 245 agttgtagcgcatgtaattttgctccgcccacttgacggtgccccactcggagccgtcga 186
Query: 448 gctgcctgttcatccacccgccgctgccggcggcccggcacgcgccgccgctgacgcagg 507
|||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||
Sbjct: 185 gctgcctgttcatccacccgtcgctgccggcat---ggcaagcgccgccgctggcgcagg 129
Query: 508 cgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccga 567
|| ||||||||||| | ||| ||||| |||||| |||| ||||||||||||| ||
Sbjct: 128 cgttggcgtagtagtttttgtacaagacgttgaagggtgcgttggaccagtcgatgggga 69
Query: 568 ccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgg 627
|| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 68 ccttgcccttctcggtcgcccagtagctgccgtcccacagcgtggcgtgcagcctcatgg 9
Query: 628 gcctggag 635
|| |||||
Sbjct: 8 gcttggag 1
Score = 56.0 bits (28), Expect = 2e-006
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 223 cagggctgctttttaatcac-aaatccacaaagaagagcaagaatcat 269
||||||||||||||||| || |||| ||||||||||| ||||||||||
Sbjct: 404 cagggctgctttttaattacaaaattcacaaagaagaacaagaatcat 357
>gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H09_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 918
Score = 238 bits (120), Expect = 2e-061
Identities = 280/329 (85%), Gaps = 6/329 (1%)
Strand = Plus / Minus
Query: 409 gctccgcccacctgacgg-tgccccactcggcgctgtcaagctgcctgttcatccacccg 467
||||||||||| |||||| |||||||||||| || ||| |||||||||||||||||||||
Sbjct: 849 gctccgcccac-tgacgggtgccccactcggagccgtcgagctgcctgttcatccacccg 791
Query: 468 ccgctgccggcggcccggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcgg 527
|||||| || |||| |||||||||||| |||||||| ||||||||||| | |
Sbjct: 790 tcgctgcgngcat---ggcaagcgccgccgctggcgcaggcgttggcgtagtagtttttg 734
Query: 528 taggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcc 587
|| ||||| |||||| |||| ||||||||||||| |||| |||| |||||||| |||
Sbjct: 733 tacaagacgttgaagggtgcgttggaccagtcgatggggaccttgcc-ttctcggtcgcc 675
Query: 588 cagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggc 647
||||||||||||||||||||||||||||||||| |||||||| |||||| | ||| ||
Sbjct: 674 cagtagctgccgtcccacagcgtggcgtgcagcctcatgggcttggagccagcgtagggg 615
Query: 648 aggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctg 707
| | ||||| ||||||||||||| ||||||||||||| ||| |||||||| |||||| |
Sbjct: 614 atgccggcgaagcgcttgaaggaccggatgaagaggttgtccaccttgaagaggatgttc 555
Query: 708 gtcgggttccagatgatggtgtaggtgtg 736
|||||||||||||||||||||||||||
Sbjct: 554 tccgggttccagatgatggtgtaggtgtg 526
>gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J09 5', mRNA sequence
Length = 729
Score = 238 bits (120), Expect = 2e-061
Identities = 204/232 (87%)
Strand = Plus / Minus
Query: 505 aggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgc 564
||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 729 aggcgttggcgtagtagttgcggtaggagacgacgaatggcgcgttggaccagttgatcg 670
Query: 565 cgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtca 624
|| | ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct: 669 ggatcttgcccttctcggtcgcccagtagctgccgtcccagagcgtggcgtgcagcttca 610
Query: 625 tgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggt 684
||||| ||||| | ||||| || ||| ||||| ||||||||||||| |||||||||||||
Sbjct: 609 tgggcttggaggtagggtaagggaggccggcgaagcgcttgaaggatcggatgaagaggt 550
Query: 685 cgtcgaccttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
||| |||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 549 tgtccaccttgaagaggatgttctccgggttccagatgatggtgtaggtgtg 498
>gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009P18f, mRNA sequence
Length = 837
Score = 216 bits (109), Expect = 8e-055
Identities = 217/253 (85%)
Strand = Plus / Minus
Query: 484 ggcacgcgccgccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagg 543
|||| |||||||||||| |||||||| ||| ||||||| | ||| ||||| |||||
Sbjct: 285 ggcaagcgccgccgctggcgcaggcgttggtgtagtagtttttgtacaagacgttgaagg 226
Query: 544 gcgcgtcggaccagtcgatgccgaccctgcccttctcggtggcccagtagctgccgtccc 603
| |||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct: 225 gtgcgttggaccagtcgatggggaccttgcccttctcggtcgcccagtagctgccgtccc 166
Query: 604 acagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgct 663
||||||||||||||||| |||||||| |||||| | ||| || | | ||||| ||||||
Sbjct: 165 acagcgtggcgtgcagcctcatgggcttggagccagcgtaggggatgccggcgaagcgct 106
Query: 664 tgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccagatga 723
||||||| ||||||||||||| ||| |||||||| |||||| | ||||||||||||||
Sbjct: 105 tgaaggaccggatgaagaggttgtccaccttgaagaggatgttctccgggttccagatga 46
Query: 724 tggtgtaggtgtg 736
|||||||||||||
Sbjct: 45 tggtgtaggtgtg 33
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 216 bits (109), Expect = 8e-055
Identities = 196/225 (87%)
Strand = Plus / Minus
Query: 512 ggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccct 571
|||| |||||| ||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 489 ggcggagtagccgcggtaggagacgacgaagggcgcgccggaccagtcgacggggacctt 430
Query: 572 gcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcct 631
|||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||| |
Sbjct: 429 gcccttctgcgtggcccagtagctgccgtcccagagcgtggcgtgcacggacatgggctt 370
Query: 632 ggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgac 691
|| || |||||| |||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct: 369 ggcgcccgggtagggcaggtcggcgtagcgcgtgaagctgcggatgaagaggtcgtccac 310
Query: 692 cttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
|||||| | || | | | |||||||||||||||||||||||||
Sbjct: 309 cttgaagatgacgttcttgtggttccagatgatggtgtaggtgtg 265
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 216 bits (109), Expect = 8e-055
Identities = 196/225 (87%)
Strand = Plus / Plus
Query: 512 ggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccct 571
|||| |||||| ||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 373 ggcggagtagccgcggtaggagacgacgaagggcgcgccggaccagtcgacggggacctt 432
Query: 572 gcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcct 631
|||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||| |
Sbjct: 433 gcccttctgcgtggcccagtagctgccgtcccagagcgtggcgtgcacggacatgggctt 492
Query: 632 ggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgac 691
|| || |||||| |||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct: 493 ggcgcccgggtagggcaggtcggcgtagcgcgtgaagctgcggatgaagaggtcgtccac 552
Query: 692 cttgaacaggatgctggtcgggttccagatgatggtgtaggtgtg 736
|||||| | || | | | |||||||||||||||||||||||||
Sbjct: 553 cttgaagatgacgttcttgtggttccagatgatggtgtaggtgtg 597
Score = 67.9 bits (34), Expect = 5e-010
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 335 gcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagtagttgta 394
||||| |||||||||||||| || |||||||| | ||| ||||| | ||||||||||||
Sbjct: 184 gcgggagcactcggcggggaagccctgcgggaatcgccagccatcgtcgcagtagttgta 243
Query: 395 gcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaagctgcct 454
||||||| ||| |||| ||||| ||||||||| | ||||||| ||| ||||| |
Sbjct: 244 gcgcatgtagtcgcgcctggcccaggcgacggtgccgcgctcggcgtcgtcgagctggcg 303
Query: 455 gttcatccacccgccgctgccggcgg 480
|| |||||| | |||| |||||||||
Sbjct: 304 gtccatccagcggccggtgccggcgg 329
>gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E12_SK.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 858
Score = 214 bits (108), Expect = 3e-054
Identities = 222/256 (86%), Gaps = 3/256 (1%)
Strand = Plus / Minus
Query: 484 ggcacgcgcc-gccgctgacgcaggcgctggcgtagtagctgcggtaggagacgacg-aa 541
|||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| ||| ||
Sbjct: 791 ggcacgcgccngctgctgacgcaggcgttggcgtagtagttgcggtacgagacaacgtaa 732
Query: 542 gggcgcgtcggaccagtcgatgccgaccctgcccttctcggtggccc-agtagctgccgt 600
||||||| |||||||| |||| || | |||| |||||||| |||| ||||||||||||
Sbjct: 731 tggcgcgttggaccagttgatggggatcttgccattctcggtcgccccagtagctgccgt 672
Query: 601 cccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagc 660
|||| ||||||||||||||| |||||||| ||||| | ||||| |||||| |||| |||
Sbjct: 671 cccagagcgtggcgtgcagcatcatgggcttggaggtagggtagggcaggccggctaagc 612
Query: 661 gcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccaga 720
| |||||||| ||||||||||||| ||| ||||||||||||||| | |||||||||||
Sbjct: 611 gtttgaaggatcggatgaagaggttgtccaccttgaacaggatgttatccgggttccaga 552
Query: 721 tgatggtgtaggtgtg 736
||||||||||||||||
Sbjct: 551 tgatggtgtaggtgtg 536
>gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J17f, mRNA sequence
Length = 542
Score = 208 bits (105), Expect = 2e-052
Identities = 186/213 (87%)
Strand = Plus / Minus
Query: 524 gcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccctgcccttctcggt 583
||||||||||||||||||||||||| |||||||||||| | |||| ||||||||| ||
Sbjct: 242 gcggtaggagacgacgaagggcgcgccggaccagtcgacggggaccttgcccttctgcgt 183
Query: 584 ggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggta 643
||||||||||||||||||||| ||||||||||||| | ||||||| ||| || ||||||
Sbjct: 182 ggcccagtagctgccgtcccagagcgtggcgtgcacggacatgggcttggcgcccgggta 123
Query: 644 cggcaggtcggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggat 703
|||||||||||||||||| ||||| |||||||||||||||||| |||||||| | ||
Sbjct: 122 gggcaggtcggcgtagcgcgtgaagctgcggatgaagaggtcgtccaccttgaagatgac 63
Query: 704 gctggtcgggttccagatgatggtgtaggtgtg 736
| | | |||||||||||||||||||||||||
Sbjct: 62 gttcttgtggttccagatgatggtgtaggtgtg 30
Score = 61.9 bits (31), Expect = 3e-008
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 335 gcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagtagttgta 394
||||| |||||||||||||| || |||||||| | ||| ||||| | |||||||||||
Sbjct: 443 gcgggagcactcggcggggaagccctgcgggaatcgccagccatcgtcccagtagttgta 384
Query: 395 gcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaagctgcct 454
||||||| ||| |||| ||||| ||||||||| | ||||||| ||| ||||| |
Sbjct: 383 gcgcatgtagtcgcgcctggcccagtcgacggtgccgcgctcggcgtcgtcgagctgncg 324
Query: 455 gttcatccacccgccgctgccggcgg 480
|| |||||| | |||| |||||||||
Sbjct: 323 gtccatccagcggccggtgccggcgg 298
>gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_J06 5', mRNA sequence
Length = 646
Score = 167 bits (84), Expect = 7e-040
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 593 gctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtc 652
|||||||||||| ||||||||||||||| |||||||| ||||| | ||||| |||||| |
Sbjct: 646 gctgccgtcccagagcgtggcgtgcagcctcatgggcttggaggtagggtagggcaggcc 587
Query: 653 ggcgtagcgcttgaaggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgg 712
|||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| | |||
Sbjct: 586 ggcgaagcgcttgaaggatcggatgaagaggttgtccaccttgaacaggatgttctccgg 527
Query: 713 gttccagatgatggtgtaggtgtg 736
||||||||||||||||||||||||
Sbjct: 526 gttccagatgatggtgtaggtgtg 503
>gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M15 5', mRNA sequence
Length = 383
Score = 161 bits (81), Expect = 4e-038
Identities = 168/197 (85%)
Strand = Plus / Minus
Query: 501 acgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcg 560
||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 249 acgcaggcgtcggcggagtagccgcggtaggagacgacgaagggcgccgcggaccagtcc 190
Query: 561 atgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagc 620
| ||||| |||| || || |||||||||||||||||||| ||||||||||||| |
Sbjct: 189 accttcaccctcccctgctgcgtcgcccagtagctgccgtcccagagcgtggcgtgcacc 130
Query: 621 gtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaag 680
| ||||||| ||| || |||||| ||||||||||||| |||| ||||| |||||| ||||
Sbjct: 129 gccatgggcttggcgcccgggtagggcaggtcggcgtggcgcgtgaagcagcggaggaag 70
Query: 681 aggtcgtcgaccttgaa 697
|||||||| ||||||||
Sbjct: 69 aggtcgtccaccttgaa 53
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 159 bits (80), Expect = 2e-037
Identities = 200/238 (84%), Gaps = 4/238 (1%)
Strand = Plus / Minus
Query: 501 acgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcg 560
||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 429 acgcaggcgtcggcggagtagccgcggtaggagacgacgaagggcgccgcggaccagtcc 370
Query: 561 atgccgaccctgcccttctcggtggcccagtagctgccgtcccacagcgtggcgtgcagc 620
| ||||| || | || || |||||||||||||||||||| ||||||||||||| |
Sbjct: 369 accttcaccctcccgtgctgcgtcgcccagtagctgccgtcccagagcgtggcgtgcacc 310
Query: 621 gtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaaggagcggatgaag 680
| ||||||| ||| || |||||| ||||||||||||| |||| ||||| |||||| ||||
Sbjct: 309 gccatgggcttggcgcccgggtagggcaggtcggcgtggcgcgtgaagcagcggaggaag 250
Query: 681 aggtcgtcgaccttgaacagga--tgctggtcgggttccagatgatggtgtaggtgtg 736
|||||||| |||||||| | || | | |||| ||||||||||||||||||||||||
Sbjct: 249 aggtcgtccaccttgaagatgacgttccggtc--gttccagatgatggtgtaggtgtg 194
>gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
5-PRIME, mRNA sequence
Length = 634
Score = 105 bits (53), Expect = 2e-021
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 608 cgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgtagcgcttgaa 667
||||||||||| | ||||||| ||| || |||||| |||||||||||||||||| ||||
Sbjct: 634 cgtggcgtgcacggacatgggcttggcgcccgggtagggcaggtcggcgtagcgcgtgaa 575
Query: 668 ggagcggatgaagaggtcgtcgaccttgaacaggatgctggtcgggttccagatgatggt 727
| |||||||||||||||||| |||||||| | || | | | ||||||||||||||||
Sbjct: 574 gctgcggatgaagaggtcgtccaccttgaagatgacgttcttgtggttccagatgatggt 515
Query: 728 gtaggtgtg 736
|||||||||
Sbjct: 514 gtaggtgtg 506
>gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012E18f, mRNA sequence
Length = 715
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 658 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 599
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 598 gtacggcaggtcgtcgta 581
>gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014N08f, mRNA sequence
Length = 759
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 655 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 596
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 595 gtacggcaggtcgtcgta 578
>gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015A04f, mRNA sequence
Length = 755
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 655 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 596
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 595 gtacggcaggtcgtcgta 578
>gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D21f, mRNA sequence
Length = 584
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 136 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 77
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 76 gtacggcaggtcgtcgta 59
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 220 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 161
Query: 557 gtcgat 562
||||||
Sbjct: 160 gtcgat 155
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 352 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 293
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 292 gtacggcaggtcgtcgta 275
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 436 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 377
Query: 557 gtcgat 562
||||||
Sbjct: 376 gtcgat 371
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 656 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 597
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 596 gtacggcaggtcgtcgta 579
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 266 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 207
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 206 gtacggcaggtcgtcgta 189
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 350 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 291
Query: 557 gtcgat 562
||||||
Sbjct: 290 gtcgat 285
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 216 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 157
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 156 gtacggcaggtcgtcgta 139
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 300 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 241
Query: 557 gtcgat 562
||||||
Sbjct: 240 gtcgat 235
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 531 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 590
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 591 gtacggcaggtcgtcgta 608
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 447 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 506
Query: 557 gtcgat 562
||||||
Sbjct: 507 gtcgat 512
>gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 3', mRNA sequence
Length = 651
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 514 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 573
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 574 gtacggcaggtcgtcgta 591
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 430 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 489
Query: 557 gtcgat 562
||||||
Sbjct: 490 gtcgat 495
>gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c17 3', mRNA sequence
Length = 680
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 505 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 564
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 565 gtacggcaggtcgtcgta 582
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 421 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 480
Query: 557 gtcgat 562
||||||
Sbjct: 481 gtcgat 486
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 145 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 86
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 85 gtacggcaggtcgtcgta 68
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 229 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 170
Query: 557 gtcgat 562
||||||
Sbjct: 169 gtcgat 164
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 298 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 239
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 238 gtacggcaggtcgtcgta 221
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 382 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 323
Query: 557 gtcgat 562
||||||
Sbjct: 322 gtcgat 317
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 288 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 229
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 228 gtacggcaggtcgtcgta 211
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 372 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 313
Query: 557 gtcgat 562
||||||
Sbjct: 312 gtcgat 307
>gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 3', mRNA sequence
Length = 632
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 502 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 561
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 562 gtacggcaggtcgtcgta 579
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 418 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 477
Query: 557 gtcgat 562
||||||
Sbjct: 478 gtcgat 483
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 420 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 361
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 360 gtacggcaggtcgtcgta 343
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 504 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 445
Query: 557 gtcgat 562
||||||
Sbjct: 444 gtcgat 439
>gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47F20
5-PRIME, mRNA sequence
Length = 412
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 204 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 145
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 144 gtacggcaggtcgtcgta 127
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | |||||| ||||||| ||||||||||||||| | || |||
Sbjct: 288 gctgacgcagccgttggaggagtagccgcggtagttgacgacgaagggcgcctgggtcca 229
Query: 557 gtcgat 562
||||||
Sbjct: 228 gtcgat 223
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 91.7 bits (46), Expect = 3e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 655 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 596
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 595 gtacggcaggtcgtcgta 578
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 739 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 680
Query: 557 gtcgat 562
||||||
Sbjct: 679 gtcgat 674
>gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 3', mRNA sequence
Length = 546
Score = 85.7 bits (43), Expect = 2e-015
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
|||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 467 ggtggcccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 526
Query: 641 gtacggcaggtcggcgta 658
|||||| |||||| ||||
Sbjct: 527 gtacggnaggtcgtcgta 544
Score = 38.2 bits (19), Expect = 0.41
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 524 gcggtaggagacgacgaagggcgcgtcggaccagtcgat 562
||||||| ||||||||||||||| | || |||||||||
Sbjct: 410 gcggtagttgacgacgaagggcgcctgggtccagtcgat 448
>gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009B18f, mRNA sequence
Length = 725
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 581 ggtggcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgg 640
||||||| |||||||||||||||| ||||||||||||| |||||| ||| | ||||||
Sbjct: 663 ggtggccaagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgg 604
Query: 641 gtacggcaggtcggcgta 658
||||||||||||| ||||
Sbjct: 603 gtacggcaggtcgtcgta 586
Score = 40.1 bits (20), Expect = 0.10
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 519 tagctgcggtaggagacgacgaagggcgcgtcggaccagtcgat 562
|||| ||||||| ||||||||||||||| | || |||||||||
Sbjct: 725 tagccgcggtagttgacgacgaagggcgcttgggtccagtcgat 682
>gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200031B06F1, mRNA sequence
Length = 375
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 512 ggcgtagtagctgcggtaggagacgacgaagggcgcgtcggaccagtcgatgccgaccct 571
|||| |||||| ||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 78 ggcggagtagccgcggtaggagacgacgaagggcgcgccggaccagtcgacggggacctt 19
Query: 572 gcccttctcggtggccca 589
|||||||| ||||||||
Sbjct: 18 gcccttctgcgtggccca 1
Score = 67.9 bits (34), Expect = 5e-010
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 335 gcgggcgcactcggcggggagtccttgcgggaacctccacccatcctggcagtagttgta 394
||||| |||||||||||||| || |||||||| | ||| ||||| | ||||||||||||
Sbjct: 267 gcgggagcactcggcggggaagccctgcgggaatcgccagccatcgtcgcagtagttgta 208
Query: 395 gcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgctgtcaagctgcct 454
||||||| ||| |||| ||||| ||||||||| | ||||||| ||| ||||| |
Sbjct: 207 gcgcatgtagtcgcgcctggcccaggcgacggtgccgcgctcggcgtcgtcgagctggcg 148
Query: 455 gttcatccacccgccgctgccggcgg 480
|| |||||| | |||| |||||||||
Sbjct: 147 gtccatccagcggccggtgccggcgg 122
>gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020F14f, mRNA sequence
Length = 882
Score = 81.8 bits (41), Expect = 3e-014
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 586 cccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacg 645
||||||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||
Sbjct: 642 cccagtagctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcgggtacg 583
Query: 646 gcaggtcggcgta 658
|||||||| ||||
Sbjct: 582 gcaggtcgtcgta 570
>gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 3', mRNA sequence
Length = 631
Score = 77.8 bits (39), Expect = 5e-013
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagct-gccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcg 639
||||||||||||||| ||||||||| ||||||||||||| |||||| ||| | |||||
Sbjct: 521 ggtggcccagtagcttgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcg 580
Query: 640 ggtacggcaggtcggcgta 658
|||||||||||||| ||||
Sbjct: 581 ggtacggcaggtcgtcgta 599
Score = 38.2 bits (19), Expect = 0.41
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 524 gcggtaggagacgacgaagggcgcgtcggaccagtcgat 562
||||||| ||||||||||||||| | || |||||||||
Sbjct: 464 gcggtagttgacgacgaagggcgcctgggtccagtcgat 502
>gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 3', mRNA sequence
Length = 650
Score = 77.8 bits (39), Expect = 5e-013
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 581 ggtggcccagtagc-tgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcg 639
|||||||||||||| |||||||||| ||||||||||||| |||||| ||| | |||||
Sbjct: 491 ggtggcccagtagcctgccgtcccagagcgtggcgtgcaccgtcatcggctggctgctcg 550
Query: 640 ggtacggcaggtcggcgta 658
|||||||||||||| ||||
Sbjct: 551 ggtacggcaggtcgtcgta 569
Score = 44.1 bits (22), Expect = 0.007
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 497 gctgacgcaggcgctggcgtagtagctgcggtaggagacgacgaagggcgcgtcggacca 556
|||||||||| || ||| | ||||| ||||||| ||||||||||||||| | || |||
Sbjct: 407 gctgacgcagccgttggaggtgtagccgcggtagttgacgacgaagggcgcctgggtcca 466
Query: 557 gtcgat 562
||||||
Sbjct: 467 gtcgat 472
>gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cE.11, mRNA sequence
Length = 1248
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 316 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 271
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 454 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 499
>gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 3', mRNA sequence
Length = 485
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 283 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 328
>gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 5', mRNA sequence
Length = 417
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 203 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 158
>gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. vulgare cDNA clone HB22H07
5-PRIME, mRNA sequence
Length = 447
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 110 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 65
>gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O16
5-PRIME, mRNA sequence
Length = 604
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 176 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 131
>gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
3-PRIME, mRNA sequence
Length = 551
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 414 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 459
>gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L142 5-PRIME, mRNA sequence
Length = 632
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 201 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 156
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 67.9 bits (34), Expect = 5e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 627 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcatcggcc 582
>gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003D18f, mRNA sequence
Length = 870
Score = 65.9 bits (33), Expect = 2e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 649 gcccagtagctgccgtcccacagcgtcgcgtgcaccgtcat 609
>gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008D05f, mRNA sequence
Length = 817
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 586 cccagtagctgccgtcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacg 645
|||||||||| |||||||| ||||||||||||| |||||| ||| | |||||||| ||
Sbjct: 650 cccagtagctcccgtcccaaagcgtggcgtgcaccgtcatcggctggctgctcgggtccg 591
Query: 646 gcaggtcggcgta 658
|||||||| ||||
Sbjct: 590 gcaggtcgtcgta 578
>gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M16r 3', mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 7e-006
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 585 gcccagtagctgcc-gtcccacagcgtggcgtgcagcgtcatgggcc 630
|||||||||||||| |||||||||||| ||||||| |||||| ||||
Sbjct: 540 gcccagtagctgcccgtcccacagcgtcgcgtgcaccgtcatcggcc 586
>gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 5', mRNA sequence
Length = 642
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 600 tcccacagcgtggcgtgcagcgtcatgggcctggagctcgggtacggcaggtcggcgta 658
||||| ||||||||||||| |||||| ||| | ||||||||||||||||||| ||||
Sbjct: 642 tcccagagcgtggcgtgcaccgtcatcggctggctgctcgggtacggcaggtcgtcgta 584
>gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_B20 5', mRNA sequence
Length = 516
Score = 54.0 bits (27), Expect = 7e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggtgtg 736
|||||||||||||||||||||||||||
Sbjct: 513 cgggttccagatgatggtgtaggtgtg 487
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,080
Number of Sequences: 312970
Number of extensions: 84080
Number of successful extensions: 24118
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23873
Number of HSP's gapped (non-prelim): 231
length of query: 758
length of database: 175,134,539
effective HSP length: 19
effective length of query: 739
effective length of database: 169,188,109
effective search space: 125030012551
effective search space used: 125030012551
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)