BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI960615.1|BI960615 HVSMEn0025G06f Hordeum vulgare rachi... 412 e-114
gb|BM443592.2|BM443592 EBro02_SQ005_M20_R root, 3 week, hyd... 392 e-108
gb|BU983853.1|BU983853 HA31D22r HA Hordeum vulgare subsp. v... 391 e-107
gb|BI960464.1|BI960464 HVSMEn0024L03f Hordeum vulgare rachi... 361 3e-098
gb|BG301108.1|BG301108 HVSMEb0019J09f Hordeum vulgare seedl... 341 3e-092
gb|BI951506.1|BI951506 HVSMEm0001C21f Hordeum vulgare green... 339 1e-091
gb|BF257828.2|BF257828 HVSMEf0013P18f Hordeum vulgare seedl... 333 6e-090
gb|BU985248.1|BU985248 HF06J04r HF Hordeum vulgare subsp. v... 331 2e-089
gb|BI960304.1|BI960304 HVSMEn0024C15f Hordeum vulgare rachi... 329 1e-088
gb|CB879366.1|CB879366 HP11O20T HP Hordeum vulgare subsp. v... 321 2e-086
gb|BM374974.1|BM374974 EBma05_SQ003_O08_R maternal, 12 DPA,... 317 4e-085
gb|BG299732.1|BG299732 HVSMEa0021J11f Hordeum vulgare seedl... 311 2e-083
gb|BU980638.1|BU980638 HA21D22r HA Hordeum vulgare subsp. v... 311 2e-083
gb|BM442858.2|BM442858 EBro02_SQ001_J09_R root, 3 week, hyd... 291 2e-077
gb|BQ756652.1|BQ756652 EBem09_SQ003_F19_R embryo, 1 Day ger... 278 3e-073
gb|AV927067.1|AV927067 AV927067 K. Sato unpublished cDNA li... 244 5e-063
gb|BM371440.2|BM371440 EBma08_SQ002_L23_R maternal, 28 DPA,... 242 2e-062
gb|BI780970.2|BI780970 EBma03_SQ001_A07_R maternal, 8 DPA, ... 214 4e-054
gb|BM374970.1|BM374970 EBma05_SQ003_O01_R maternal, 12 DPA,... 198 2e-049
gb|BQ469266.1|BQ469266 HM03O09r HM Hordeum vulgare subsp. v... 178 2e-043
gb|BQ661537.1|BQ661537 HM03O09u HM Hordeum vulgare subsp. v... 178 2e-043
gb|BG300671.1|BG300671 HVSMEb0017O17f Hordeum vulgare seedl... 174 3e-042
gb|BM440840.2|BM440840 EBca01_SQ001_F05_R carpel, pre-anthe... 168 2e-040
gb|BG299768.1|BG299768 HVSMEa0021L17f Hordeum vulgare seedl... 123 1e-026
gb|AL503647.1|AL503647 AL503647 Hordeum vulgare Barke roots... 109 2e-022
gb|BI957748.1|BI957748 HVSMEn0011A02f Hordeum vulgare rachi... 109 2e-022
gb|AV911241.1|AV911241 AV911241 K. Sato unpublished cDNA li... 109 2e-022
gb|AV911423.1|AV911423 AV911423 K. Sato unpublished cDNA li... 109 2e-022
gb|AV911857.1|AV911857 AV911857 K. Sato unpublished cDNA li... 109 2e-022
gb|BI948142.1|BI948142 HVSMEl0008F18f Hordeum vulgare spike... 105 3e-021
gb|BF266201.2|BF266201 HV_CEa0014H09f Hordeum vulgare seedl... 103 1e-020
gb|BF260943.3|BF260943 HVSMEf0023F15f Hordeum vulgare seedl... 101 4e-020
gb|BF254992.2|BF254992 HVSMEf0005K05f Hordeum vulgare seedl... 98 7e-019
gb|BM443390.2|BM443390 EBro02_SQ003_O10_R root, 3 week, hyd... 96 3e-018
gb|AV909530.1|AV909530 AV909530 K. Sato unpublished cDNA li... 94 1e-017
gb|BM369928.2|BM369928 EBro08_SQ002_F21_R root, 3 week, dro... 94 1e-017
gb|BF260484.1|BF260484 HVSMEf0022C02f Hordeum vulgare seedl... 86 2e-015
gb|CB877294.1|CB877294 HP04E23T HP Hordeum vulgare subsp. v... 86 2e-015
gb|BG416893.2|BG416893 HVSMEk0015B16f Hordeum vulgare testa... 84 1e-014
gb|AV909351.1|AV909351 AV909351 K. Sato unpublished cDNA li... 78 6e-013
gb|BM443151.2|BM443151 EBro02_SQ002_M05_R root, 3 week, hyd... 78 6e-013
gb|AL501067.1|AL501067 AL501067 Hordeum vulgare Barke roots... 72 4e-011
gb|AJ435127.1|AJ435127 AJ435127 S00002 Hordeum vulgare subs... 72 4e-011
gb|AJ462473.1|AJ462473 AJ462473 S00002 Hordeum vulgare subs... 72 4e-011
gb|BF622794.2|BF622794 HVSMEa0008O10f Hordeum vulgare seedl... 70 1e-010
gb|BF621463.3|BF621463 HVSMEa0011B06f Hordeum vulgare seedl... 70 1e-010
gb|BQ468061.1|BQ468061 HR01N04r HR Hordeum vulgare subsp. v... 68 6e-010
gb|BF255030.2|BF255030 HVSMEf0005L23f Hordeum vulgare seedl... 60 1e-007
gb|BI951063.1|BI951063 HVSMEl0024E03f Hordeum vulgare spike... 52 3e-005
gb|BQ660284.1|BQ660284 HI01M13w HI Hordeum vulgare subsp. v... 50 1e-004
gb|BF253467.3|BF253467 HVSMEf0001I01f Hordeum vulgare seedl... 44 0.008
gb|BU978727.1|BU978727 HA14B17r HA Hordeum vulgare subsp. v... 42 0.033
gb|CK124261.1|CK124261 BES1824108c06 BES1824 Hordeum vulgar... 42 0.033
>gb|BI960615.1|BI960615 HVSMEn0025G06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G06f, mRNA sequence
Length = 653
Score = 412 bits (208), Expect = e-114
Identities = 466/552 (84%)
Strand = Plus / Minus
Query: 290 ccagctccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtagg 349
||||||||| |||| |||||||||||| ||||| |||||||||||||||| ||||| |
Sbjct: 649 ccagctccatctcggacggccacctcgacccgtccccggcgaacgtgccggccccgtacg 590
Query: 350 ggctgccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacag 409
||||||||||||| |||| ||||||| |||||| |||||||||||| ||||| ||||| |
Sbjct: 589 ggctgccgccctgcaccttgtccatgtcgaacatcttggcgccgaacgtgtaccccaccg 530
Query: 410 gcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcct 469
|||||||||||||||||||||| |||| |||||| | ||||||| || ||||||||||
Sbjct: 529 gcacgaacaccatgccgtggtgggtcagctgggtcactgctgtcagcggcgtcgtctcct 470
Query: 470 ggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctct 529
| || || ||||||| || |||| |||||| ||||| || ||||||||||| |||||||
Sbjct: 469 gcccgccgccctgggtgcccgtgctgaagaacacgcccgccggcttgccggccaggctct 410
Query: 530 gctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattc 589
|||||||||| ||||| || || || ||||||||||||||||||||||| |||||||| |
Sbjct: 409 gctccctccacagcccgcccgtcgcgtcgaagaacgccttcatctgcgccgccatcatgc 350
Query: 590 cgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtga 649
|||||||||| ||||||||||| |||| ||||||||||| || || || || || | ||
Sbjct: 349 cgaacctcgtcgggaacccgaacaggacgccgtcggcctccgccagctcctgaggggaga 290
Query: 650 tgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggaggg 709
| || |||||||| | ||| || || || |||||||| ||||| |||||||| |||
Sbjct: 289 tcaccggcacgtcggtcttgggtggggcacccatcttgccaaggacttcctcgttcagga 230
Query: 710 tttcagggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctgga 769
| |||||||||||||| |||| | || || ||||||||||| || |||||||||| ||
Sbjct: 229 tctcagggacctgccacactttaacctccacgccttcaacagaggaagcacctttcttga 170
Query: 770 tctcttcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaa 829
|||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 169 tctcatcagctagcttagcaacatgaccatacatggagtagtacacgacgtagaccttga 110
Query: 830 ccgccattggag 841
||||||| ||||
Sbjct: 109 ccgccatgggag 98
>gb|BM443592.2|BM443592 EBro02_SQ005_M20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_M20 5', mRNA sequence
Length = 450
Score = 392 bits (198), Expect = e-108
Identities = 341/389 (87%)
Strand = Plus / Minus
Query: 241 agcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagctccacc 300
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 403 agcttcttggcgatgccggcgaagtacttgccctggtggaaggcgtgctccagctccatc 344
Query: 301 tcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgccgccc 360
|| |||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 343 tcngacggccacctcgacccgtccccggcgaacgtgccggccccgtacgggctgccgccc 284
Query: 361 tgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacacc 420
|| |||| ||||||| |||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 283 tgcaccttgtccatgtcgaacatcttggcgccgaacgtgtaccccaccggcacgaacacc 224
Query: 421 atgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccc 480
||||||||||| |||| |||||| | ||||||| || ||||||||||| || || |||
Sbjct: 223 atgccgtggtgggtcagctgggtcactgctgtcagcggcgtcgtctcctgcccgccgccc 164
Query: 481 tgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccag 540
|||| || |||| |||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct: 163 tgggtgcccgtgctgaagaacacgcccgccggcttgccggccaggctctgctccctccac 104
Query: 541 agcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgtt 600
||||| || || || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 103 agcccgcccgtcgcgtcgaagaacgccttcatctgcgccgccatcatgccgaacctcgtc 44
Query: 601 gggaacccgaagaggattccgtcggcctc 629
||||||||||| |||| |||||||||||
Sbjct: 43 gggaacccgaacaggacgccgtcggcctc 15
>gb|BU983853.1|BU983853 HA31D22r HA Hordeum vulgare subsp. vulgare cDNA clone HA31D22
5-PRIME, mRNA sequence
Length = 574
Score = 391 bits (197), Expect = e-107
Identities = 440/521 (84%)
Strand = Plus / Minus
Query: 322 tcggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaac 381
|||||||| || ||||| |||||||| |||||||| |||||||| | ||||||| |||||
Sbjct: 567 tcggcggcaaatgtgcctgcgccgtacgggctgccaccctgaactttgtccatgtcgaac 508
Query: 382 agcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgg 441
|||||||| ||||||||||| || || || ||||| |||||||||||||| ||||||||
Sbjct: 507 agcttggcaccgaaggtgtacccgacgggaacgaaaaccatgccgtggtgagtcaactga 448
Query: 442 gtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaag 501
|| | | |||||| ||||| |||||||| ||||||||||| | ||||||| |||||||
Sbjct: 447 gttactgttgtcaatgctgtagtctcctgcccaccaccctgagtaccagtgctgaagaag 388
Query: 502 acgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaag 561
| || ||||||||||| ||||| |||||||||||||| || ||||| || ||||| |||
Sbjct: 387 atacccgcaggcttgcctgcaagactctgctccctccacaggccaccggttgcatcaaag 328
Query: 562 aacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccg 621
|| |||||||| ||||| |||||||| || ||||| || || || || |||||||| ||
Sbjct: 327 aatgccttcatttgcgcagccatcatgccaaaccttgtaggaaaaccaaagaggatccca 268
Query: 622 tcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgccc 681
|| || || || |||||||| || ||||||| ||| | ||| ||||||| || || |||
Sbjct: 267 tctgcgtccgcaagttcttgtggtgtgatgattggggcatcaagcttaggaggcgcaccc 208
Query: 682 atctttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaaca 741
||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| |||
Sbjct: 207 atctttccaagtacttcctccgggagagtttcagggacctgccatattttagcttcgaca 148
Query: 742 ccttcaacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatac 801
|||||||| || || | ||||||| |||||| ||||||||||| | ||||||||||||
Sbjct: 147 ccttcaactgatgacacgcctttcttgatctcatcagctagtttagcgacatgtccatac 88
Query: 802 atggaatagtacacgacgtagaccttaaccgccattggaga 842
||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 87 atggagtagtacacgacatagaccttgaccgccattggaga 47
>gb|BI960464.1|BI960464 HVSMEn0024L03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L03f, mRNA sequence
Length = 650
Score = 361 bits (182), Expect = 3e-098
Identities = 432/516 (83%)
Strand = Plus / Minus
Query: 326 cggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagct 385
|||||||||| ||||| | ||||||| ||| |||||| || ||||||||| |||||| ||
Sbjct: 603 cggcgaacgtcccggcccggtaggggntgcggccctgcacttggtccatgtcgaacatct 544
Query: 386 tggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtga 445
|||||| ||| ||||| ||||| ||||||||||||||||||||||| |||| |||||| |
Sbjct: 543 tggcgcngaacgtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtca 484
Query: 446 tcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgc 505
||||||| || ||||||||||| || || ||||||| || |||| |||||| ||||
Sbjct: 483 ctgctgtcagcggcgtcgtctcctgcccgccgccctgggtgcccgtgctgaagaacacgc 424
Query: 506 cggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacg 565
| || ||||||||||| ||||||||||||||||| ||||| || || || ||||||||||
Sbjct: 423 ccgccggcttgccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacg 364
Query: 566 ccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcgg 625
||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||
Sbjct: 363 ccttcatctgcgccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcgg 304
Query: 626 cctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatct 685
|||| || || || || || | ||| || |||||||| | ||| || || || |||||||
Sbjct: 303 cctccgccagctcctgaggggagatcaccggcacgtcggtcttgggtggggcacccatct 244
Query: 686 ttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacacctt 745
| ||||| |||||||| ||| | |||||||||||||| |||| | || || ||||
Sbjct: 243 tgccaaggacttcctcgttcaggatctcagggacctgccacactttaacctccacgcctt 184
Query: 746 caacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatgg 805
||||||| || |||||||||| |||||| |||||||| || ||||||| ||||||||||
Sbjct: 183 caacagaggaagcacctttcttgatctcatcagctagcttagcaacatgaccatacatgg 124
Query: 806 aatagtacacgacgtagaccttaaccgccattggag 841
| |||||||||||||||||||| |||||||| ||||
Sbjct: 123 agtagtacacgacgtagaccttgaccgccatgggag 88
>gb|BG301108.1|BG301108 HVSMEb0019J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019J09f, mRNA sequence
Length = 580
Score = 341 bits (172), Expect = 3e-092
Identities = 412/492 (83%)
Strand = Plus / Minus
Query: 350 ggctgccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacag 409
||||||||||||| || | ||||||| |||||| |||||||||||| ||||| ||||| |
Sbjct: 579 ggctgccgccctgcacattgtccatgtcgaacatcttggcgccgaacgtgtaccccaccg 520
Query: 410 gcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcct 469
|||||||| ||||||||||||| |||| |||||| | ||||||| || ||||||||||
Sbjct: 519 gcacgaaccccatgccgtggtgggtcagctgggtcactgctgtcagcggcgtcgtctcct 460
Query: 470 ggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctct 529
| || || ||||||| || |||| |||||| ||||| || ||||||||||| |||||||
Sbjct: 459 gcccgccgccctgggtgcccgtgctgaagaacacgcccgccggcttgccggccaggctct 400
Query: 530 gctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattc 589
|||||||||| ||||| || || || ||||||||||||||||||||||| |||||||| |
Sbjct: 399 gctccctccacagcccgcccgtcgcgtcgaagaacgccttcatctgcgccgccatcatgc 340
Query: 590 cgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtga 649
|||||||||| ||||||||||| |||| ||||||||||| || || || || || | ||
Sbjct: 339 cgaacctcgtcgggaacccgaacaggacgccgtcggcctccgccagctcctgaggggaga 280
Query: 650 tgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggaggg 709
| || |||||||| | ||| || || || |||||||| ||||| |||||||| |||
Sbjct: 279 tcaccggcacgtcggtcttgggtggggcacccatcttgccaaggacttcctcgttcagga 220
Query: 710 tttcagggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctgga 769
| |||||||||||||| |||| | || || ||||||||||| || |||||||||| ||
Sbjct: 219 tctcagggacctgccacactttaacctccacgccttcaacagaggaagcacctttcttga 160
Query: 770 tctcttcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaa 829
|||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 159 tctcatcagctagcttagcaacatgaccatacatggagtagtacacgacgtagaccttga 100
Query: 830 ccgccattggag 841
||||||| ||||
Sbjct: 99 ccgccatgggag 88
>gb|BI951506.1|BI951506 HVSMEm0001C21f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0001C21f, mRNA sequence
Length = 849
Score = 339 bits (171), Expect = 1e-091
Identities = 427/511 (83%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 331 aacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttggcg 390
||||||||||| ||| | ||||||||||| || || | ||||||| |||||| || ||||
Sbjct: 604 aacgtgccggccccg-acgggctgccgccttgcactttgtccatgtcgaacatctgggcg 546
Query: 391 ccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgct 450
||||| ||||| ||||| ||||||||||||||||||||||| |||| |||||| | |||
Sbjct: 545 ccgaacgtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtcactgct 486
Query: 451 gtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggca 510
|||| || ||||||||||| || || ||||||| || |||| |||||| ||||| ||
Sbjct: 485 gtcagcggcgtcgtctcctgcccgccgccctgggtgcccgtgctgaagaacacgcccgcc 426
Query: 511 ggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttc 570
||||||||||| ||||||||||||||||| ||||| || || || |||||||||||||||
Sbjct: 425 ggcttgccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacgccttc 366
Query: 571 atctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctct 630
|||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 365 atctgcgccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcggcctcc 306
Query: 631 gcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttcca 690
|| || || || || | ||| || |||||||| | ||| || || || |||||||| |||
Sbjct: 305 gccagctcctgaggggagatcaccggcacgtcggtcttgggtggggcacccatcttgcca 246
Query: 691 agcacttcctcagggagggtttcagggacctgccatgttttagcttcaacaccttcaaca 750
|| |||||||| ||| | |||||||||||||| |||| | || || |||||||||
Sbjct: 245 aggacttcctcgttcaggatctcagggacctgccacactttaacctccacgccttcaaca 186
Query: 751 gacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatggaatag 810
|| || |||||||||| |||||| |||||||| || ||||||| ||||||||||| |||
Sbjct: 185 gaggaagcacctttcttgatctcatcagctagcttagcaacatgaccatacatggagtag 126
Query: 811 tacacgacgtagaccttaaccgccattggag 841
||||||||||||||||| |||||||| ||||
Sbjct: 125 tacacgacgtagaccttgaccgccatgggag 95
>gb|BF257828.2|BF257828 HVSMEf0013P18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013P18f, mRNA sequence
Length = 850
Score = 333 bits (168), Expect = 6e-090
Identities = 402/480 (83%)
Strand = Plus / Minus
Query: 334 gtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttggcgccg 393
||||| |||||||| |||||||| ||||||| | ||||||| ||||||||||||| |||
Sbjct: 695 gtgcctgcgccgtacgggctgccaacctgaactttgtccatgtcgaacagcttggcaccg 636
Query: 394 aaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtc 453
|||||||| || || || ||||| |||||||||||||| |||||||| || | | ||||
Sbjct: 635 aaggtgtacccgacgggaacgaaaaccatgccgtggtgagtcaactgagttactgttgtc 576
Query: 454 aacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggc 513
|| ||||| |||||||| ||||||||||| | ||||||| |||||||| || ||||||
Sbjct: 575 aatgctgtagtctcctgcccaccaccctgagtaccagtgctgaagaagatacccgcaggc 516
Query: 514 ttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatc 573
||||| ||||| |||||||||||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 515 ttgcctgcaagactctgctccctccacaggccaccggttgcatcaaagaatgccttcatt 456
Query: 574 tgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcg 633
||||| |||||||| || ||||| || || || || |||||||| || || || || ||
Sbjct: 455 tgcgcagccatcatgccaaaccttgtaggaaaaccaaagaggatcccatctgcgtccgca 396
Query: 634 agttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagc 693
|||||||| || ||||||| ||| | ||| ||||||| || || ||||||||||||||
Sbjct: 395 agttcttgtggtgtgatgattggggcatcaagcttaggaggcgcacccatctttccaagt 336
Query: 694 acttcctcagggagggtttcagggacctgccatgttttagcttcaacaccttcaacagac 753
|||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct: 335 acttcctccgggagagtttcagggacctgccatattttagcttcgacaccttcaactgat 276
Query: 754 gaggcacctttctggatctcttcagctagtttgccaacatgtccatacatggaatagtac 813
|| | ||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||
Sbjct: 275 gacacgcctttcttgatctcatcagctagtttagcgacatgtccatacatggagtagtac 216
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 812 acacgacgtagaccttaaccgccattggaga 842
||||||| |||||||| ||||||||||||||
Sbjct: 59 acacgacatagaccttgaccgccattggaga 29
>gb|BU985248.1|BU985248 HF06J04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06J04
5-PRIME, mRNA sequence
Length = 557
Score = 331 bits (167), Expect = 2e-089
Identities = 407/487 (83%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 502 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 443
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 442 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 383
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
|| |||||||| | ||||||| ||||||||||||| ||||||||||| || || || |||
Sbjct: 382 ccaccctgaactttgtccatgtcgaacagcttggcaccgaaggtgtacccgacgggaacg 323
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|| |||||||||||||| |||||||| || | | |||||| ||||| |||||||| |||
Sbjct: 322 aaaaccatgccgtggtgagtcaactgagttactgttgtcaatgctgtagtctcctgccca 263
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|||||||| | ||||||| |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 262 ccaccctgagtaccagtgctgaagaagatacccgcaggcttgcctgcaagactctgctcc 203
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
||||| || ||||| || ||||| ||||| |||||||| ||||| |||||||| || |||
Sbjct: 202 ctccacaggccaccggttgcatcaaagaatgccttcatttgcgcagccatcatgccaaac 143
Query: 595 ctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgact 654
|| || || || || |||||||| || || || || || |||||||| || ||||||| |
Sbjct: 142 cttgtaggaaaaccaaagaggatcccatctgcgtccgcaagttcttgtggtgtgatgatt 83
Query: 655 ggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttca 714
|| | ||| ||||||| || || |||||||||||||| |||||||| ||||| ||||||
Sbjct: 82 ggggcatcaagcttaggaggcgcacccatctttccaagtacttcctccgggagagtttca 23
Query: 715 gggacct 721
|||||||
Sbjct: 22 gggacct 16
>gb|BI960304.1|BI960304 HVSMEn0024C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024C15f, mRNA sequence
Length = 636
Score = 329 bits (166), Expect = 1e-088
Identities = 443/534 (82%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 309 ccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgcc-gccctgaacct 367
|||||| || ||||| |||||||||||||||| | ||| |||||||| ||| || || |
Sbjct: 636 ccacctagacccgtccccggcgaacgtgccggcccggtacgggctgcccgccttgcactt 577
Query: 368 ggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgt 427
||||||| ||||| |||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 576 tgtccatgttgaacatcttggcgccgaacgtgtaccccaccggcacgaacaccatgccgt 517
Query: 428 ggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatc 487
|||| |||| |||||| | ||||||| || ||||||||||| || || ||||||| |
Sbjct: 516 ggtgggtcagctgggtcactgctgtcagcggcgtcgtctcctgcccgccgccctgggtgc 457
Query: 488 cagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccac 547
| ||| |||||| ||||| || ||||||||||| ||||||||||||||||| ||||| |
Sbjct: 456 ccgtgatgaagaacacgcccgccggcttgccggccaggctctgctccctccacagcccgc 397
Query: 548 cagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacc 607
| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 396 ccgtcgcgtcgaagaacgccttcatctgcgccgccatcatgccgaacctcgtcgggaacc 337
Query: 608 cgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggct 667
|||| |||| ||||||||||| || || || || || | ||| || |||||||| | ||
Sbjct: 336 cgaacaggacgccgtcggcctccgccagctcatgaggggagatcaccggcacgtcggtct 277
Query: 668 tagggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatg 727
| || || || |||||||| ||||| |||||||| ||| | ||||||||||||||
Sbjct: 276 tgggtggggcacccatcttgccaaggacttcctcgttcaggatctcagggacctgccaca 217
Query: 728 ttttagcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgc 787
|||| | || || ||||||||||| || || ||||||| |||||| |||||||| ||
Sbjct: 216 ctttaacctccacgccttcaacagaggacgcccctttcttgatctcatcagctagcttag 157
Query: 788 caacatgtccatacatggaatagtacacgacgtagaccttaaccgccattggag 841
||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 156 caacatgaccatacatggagtagtacacgacgtagaccttgaccgccatgggag 103
>gb|CB879366.1|CB879366 HP11O20T HP Hordeum vulgare subsp. vulgare cDNA clone HP11O20
5-PRIME, mRNA sequence
Length = 550
Score = 321 bits (162), Expect = 2e-086
Identities = 381/454 (83%)
Strand = Plus / Minus
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatc 447
|||||||| ||||| ||||| ||||||||||||||||||||||| |||| |||||| |
Sbjct: 550 gcgccgaacgtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtcact 491
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccg 507
||||||| || ||||||||||| || || ||||||| || |||| |||||| |||||
Sbjct: 490 gctgtcagcggcgtcgtctcctgcccgccgccctgggtgcccgtgctgaagaacacgccc 431
Query: 508 gcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgcc 567
|| ||||||||||| ||||||||||||||||| ||||| || || || ||||||||||||
Sbjct: 430 gccggcttgccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacgcc 371
Query: 568 ttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcc 627
||||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||
Sbjct: 370 ttcatctgcgccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcggcc 311
Query: 628 tctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatcttt 687
|| || || || || || | ||| || |||||||| | ||| || || |||||||||||
Sbjct: 310 tccgccagctcctgaggggagatcaccggcacgtcggtcttgggaggggcgcccatcttg 251
Query: 688 ccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacaccttca 747
||||| |||||||| ||| | |||||||||||||| |||| | || || ||||||
Sbjct: 250 ccaaggacttcctcgttcaggatctcagggacctgccacactttaacctccacgccttca 191
Query: 748 acagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatggaa 807
||||| || |||||||||| |||||| |||||||| || ||||||| |||||||||||
Sbjct: 190 acagaggaagcacctttcttgatctcatcagctagcttagcaacatgaccatacatggag 131
Query: 808 tagtacacgacgtagaccttaaccgccattggag 841
|||||||||||||||||||| |||||||| ||||
Sbjct: 130 tagtacacgacgtagaccttgaccgccatgggag 97
>gb|BM374974.1|BM374974 EBma05_SQ003_O08_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ003_O08 5', mRNA sequence
Length = 406
Score = 317 bits (160), Expect = 4e-085
Identities = 331/388 (85%)
Strand = Plus / Minus
Query: 275 ggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtcggcggcgaacg 334
|||||||||||||||||||||||| ||| |||||||||||| ||||| ||| |||
Sbjct: 406 ggtggaaggcgtgctccagctccatctccgacggccacctcgacccgtccccgggcgacg 347
Query: 335 tgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttggcgccga 394
||||||| ||||| |||||||||||||| |||| ||||||| |||||| |||||||||||
Sbjct: 346 tgccggccccgtacgggctgccgccctgcaccttgtccatgtcgaacatcttggcgccga 287
Query: 395 aggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtca 454
| ||||| ||||| ||||||||||||||||||||||| |||| |||||| | |||||||
Sbjct: 286 acgtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtcactgctgtca 227
Query: 455 acgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggct 514
|| ||||||||||| || || ||||||| || |||| |||||| ||||| || ||||
Sbjct: 226 gcggcgtcgtctcctgcccgccgccctgggtgcccgtgctgaagaacacgcccgccggct 167
Query: 515 tgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatct 574
||||||| ||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct: 166 tgccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacgccttcatct 107
Query: 575 gcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcga 634
|||| |||||||| ||||||||||| ||||||||||| |||| ||||||||||| || |
Sbjct: 106 gcgccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcggcctccgcca 47
Query: 635 gttcttgcggcgtgatgactggcacgtc 662
| ||||| || | ||| || ||||||||
Sbjct: 46 gctcttgaggggagatcaccggcacgtc 19
>gb|BG299732.1|BG299732 HVSMEa0021J11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021J11f, mRNA sequence
Length = 569
Score = 311 bits (157), Expect = 2e-083
Identities = 394/473 (83%)
Strand = Plus / Minus
Query: 369 gtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtg 428
||||||| |||||| || ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 564 gtccatgtcgaacatctgggcgccgaacgtgtaccccaccggcacgaacaccatgccgtg 505
Query: 429 gtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatcc 488
||| |||| |||||| | ||||||| || ||||||||||| || || ||||||| ||
Sbjct: 504 gtgggtcagctgggtcactgctgtcagcggcgtcgtctcctgcccgccgccctgggtgcc 445
Query: 489 agtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccacc 548
|||| |||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 444 cgtgctgaagaacacgcccgccggcttgccggccaggctctgctccctccacagcccgcc 385
Query: 549 agtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaaccc 608
|| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 384 cgtcgcgtcgaagaacgccttcatctgcgccgccatcatgccgaacctcgtcgggaaccc 325
Query: 609 gaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggctt 668
||| |||| ||||||||||| || || || || || | ||| || |||||||| | |||
Sbjct: 324 gaacaggacgccgtcggcctccgccagctcctgaggggagatcaccggcacgtcggtctt 265
Query: 669 agggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatgt 728
|| || || |||||||| ||||| |||||||| ||| | |||||||| |||||
Sbjct: 264 gggtggggcacccatcttgccaaggacttcctcgttcaggatctcagggacttgccacac 205
Query: 729 tttagcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgcc 788
|||| | || || ||||||||||| | |||||||||| |||||| |||||||| || |
Sbjct: 204 tttaacctccacgccttcaacagagtaagcacctttcttgatctcatcagctagcttagc 145
Query: 789 aacatgtccatacatggaatagtacacgacgtagaccttaaccgccattggag 841
|||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 144 aacatgaccatacatggagtagtacacgacgtagaccttgaccgccatgggag 92
>gb|BU980638.1|BU980638 HA21D22r HA Hordeum vulgare subsp. vulgare cDNA clone HA21D22
5-PRIME, mRNA sequence
Length = 518
Score = 311 bits (157), Expect = 2e-083
Identities = 373/445 (83%)
Strand = Plus / Minus
Query: 397 gtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaac 456
||||| ||||| ||||||||||||||||||||||| |||| |||||| | ||||||| |
Sbjct: 515 gtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtcactgctgtcagc 456
Query: 457 gctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttg 516
| ||||||||||| || || ||||||| || |||| |||||| ||||| || ||||||
Sbjct: 455 ggcgtcgtctcctgcccgccgccctgggtgcccgtgctgaagaacacgcccgccggcttg 396
Query: 517 ccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgc 576
||||| ||||||||||||||||| ||||| || || || |||||||||||||||||||||
Sbjct: 395 ccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacgccttcatctgc 336
Query: 577 gctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagt 636
|| |||||||| ||||||||||| ||||||||||| |||| ||||||||||| || ||
Sbjct: 335 gccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcggcctccgccagc 276
Query: 637 tcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcact 696
|| || || | ||| || |||||||| | ||| || || ||||||||||| ||||| |||
Sbjct: 275 tcctgaggggagatcaccggcacgtcggtcttgggaggggcgcccatcttgccaaggact 216
Query: 697 tcctcagggagggtttcagggacctgccatgttttagcttcaacaccttcaacagacgag 756
||||| ||| | |||||||||||||| |||| | || || ||||||||||| ||
Sbjct: 215 tcctcgttcaggatctcagggacctgccacactttaacctccacgccttcaacagaggaa 156
Query: 757 gcacctttctggatctcttcagctagtttgccaacatgtccatacatggaatagtacacg 816
|||||||||| |||||| |||||||| || ||||||| ||||||||||| |||||||||
Sbjct: 155 gcacctttcttgatctcatcagctagcttagcaacatgaccatacatggagtagtacacg 96
Query: 817 acgtagaccttaaccgccattggag 841
||||||||||| |||||||| ||||
Sbjct: 95 acgtagaccttgaccgccatgggag 71
>gb|BM442858.2|BM442858 EBro02_SQ001_J09_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_J09 5', mRNA sequence
Length = 507
Score = 291 bits (147), Expect = 2e-077
Identities = 258/295 (87%)
Strand = Plus / Minus
Query: 241 agcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagctccacc 300
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 295 agcttcttggcgatgccggcgaagtacttgccctggtggaaggcgtgctccagctccatc 236
Query: 301 tcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgccgccc 360
|| |||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 235 tccgacggccacctcgacccgtccccggcgaacgtgccggccccgtacgggctgccgccc 176
Query: 361 tgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacacc 420
|| |||| ||||||| |||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 175 tgcaccttgtccatgtcgaacatcttggcgccgaacgtgtaccccaccggcacgaacacc 116
Query: 421 atgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccc 480
||||||||||| |||| |||||| | ||||||| || ||||||||||| || || |||
Sbjct: 115 atgccgtggtgggtcagctgggtcactgctgtcagcggcgtcgtctcctgcccgccgccc 56
Query: 481 tgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccc 535
|||| || |||| |||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 55 tgggtgcccgtgctgaagaacacgcccgccggcttgccggccaggctctgctccc 1
>gb|BQ756652.1|BQ756652 EBem09_SQ003_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_F19 5', mRNA sequence
Length = 433
Score = 278 bits (140), Expect = 3e-073
Identities = 320/380 (84%)
Strand = Plus / Minus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||| || ||||||||||| | ||||||| |||||||| || ||||||||||| |||
Sbjct: 431 gtctcgtgcccaccaccctgagtaccagtgctgaagaagatacccgcaggcttgcctgca 372
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
|| |||||||||||||| || ||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 371 agactctgctccctccacaggccaccggttgcatcaaagaatgccttcatttgcgcagcc 312
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
||||| || ||||| || || || || |||||||| || || || || || ||||||||
Sbjct: 311 atcatgccaaaccttgtaggaaaaccaaagaggatcccatctgcgtccgcaagttcttgt 252
Query: 643 ggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctca 702
|| ||||||| ||| | ||| ||||||| || || |||||||||||||| ||||||||
Sbjct: 251 ggtgtgatgattggggcatcaagcttaggaggcgcacccatctttccaagtacttcctcc 192
Query: 703 gggagggtttcagggacctgccatgttttagcttcaacaccttcaacagacgaggcacct 762
||||| |||||||||||||||||| |||||||||| ||||||||||| || || | |||
Sbjct: 191 gggagagtttcagggacctgccatattttagcttcgacaccttcaactgatgacacgcct 132
Query: 763 ttctggatctcttcagctagtttgccaacatgtccatacatggaatagtacacgacgtag 822
|||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||| |||
Sbjct: 131 ttcttgatctcatcagctagtttagcgacatgtccatacatggagtagtacacgacatag 72
Query: 823 accttaaccgccattggaga 842
||||| ||||||||||||||
Sbjct: 71 accttgaccgccattggaga 52
>gb|AV927067.1|AV927067 AV927067 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26j21 5', mRNA sequence
Length = 507
Score = 244 bits (123), Expect = 5e-063
Identities = 183/203 (90%)
Strand = Plus / Minus
Query: 241 agcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagctccacc 300
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 220 agcttcttggcgatgccggcgaagtacttgccctggtggaaggcgtgctccagctccatc 161
Query: 301 tcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgccgccc 360
|| |||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 160 tccgacggccacctcgacccgtccccggcgaacgtgccggccccgtacgggctgccgccc 101
Query: 361 tgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacacc 420
|| |||| ||||||| |||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 100 tgcaccttgtccatgtcgaacatcttggcgccgaacgtgtaccccaccggcacgaacacc 41
Query: 421 atgccgtggtgcgtcaactgggt 443
||||||||||| |||| ||||||
Sbjct: 40 atgccgtggtgggtcagctgggt 18
>gb|BM371440.2|BM371440 EBma08_SQ002_L23_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L23 5', mRNA sequence
Length = 563
Score = 242 bits (122), Expect = 2e-062
Identities = 302/362 (83%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| || ||||||||||| |||||||||
Sbjct: 378 cccttgagtttcttcgcgatgcccgcgaaatactgaccatggtggaaggcatgctccagc 319
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || |||| |||||||| ||||||
Sbjct: 318 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcttgcgccgtacgggctg 259
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
|| || ||||| | ||||||| ||||||||||||| |||||||||| || || || |||
Sbjct: 258 ccaccttgaactttgtccatgtcgaacagcttggcaacgaaggtgtacccgacgggaacg 199
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|| |||||||||||||| |||||||| || | | |||||| ||||| |||||||| |||
Sbjct: 198 aaaaccatgccgtggtgagtcaactgagttactgttgtcaatgctgtagtctcctgccca 139
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|||||||| | ||||||| |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 138 ccaccctgagtaccagtgctgaagaagatacccgcaggcttgcctgcaagactctgctcc 79
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
||||| || ||||| || ||||| ||||| |||||||| ||||| |||||||| || |||
Sbjct: 78 ctccacaggccaccggttgcatcaaagaatgccttcatttgcgcagccatcatgccaaac 19
Query: 595 ct 596
||
Sbjct: 18 ct 17
>gb|BI780970.2|BI780970 EBma03_SQ001_A07_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_A07 5', mRNA sequence
Length = 394
Score = 214 bits (108), Expect = 4e-054
Identities = 261/312 (83%)
Strand = Plus / Minus
Query: 530 gctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattc 589
|||||||||| ||||| || || || ||||||||||||||||||||||| |||||||| |
Sbjct: 394 gctccctccacagcccgcccgtcgcgtcgaagaacgccttcatctgcgccgccatcatgc 335
Query: 590 cgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtga 649
|||||||||| ||||||||||| |||| ||||||||||| || || || || || | ||
Sbjct: 334 cgaacctcgtcgggaacccgaacaggacgccgtcggcctccgccagctcctgaggggaga 275
Query: 650 tgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggaggg 709
| || |||||||| | ||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 274 tcaccggcacgtcggtcttgggaggggcgcccatcttgccaaggacttcctcgttcagga 215
Query: 710 tttcagggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctgga 769
| |||||||||||||| |||| | || || ||||||||||| || |||||||||| ||
Sbjct: 214 tctcagggacctgccacactttaacctccacgccttcaacagaggaagcacctttcttga 155
Query: 770 tctcttcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaa 829
|||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 154 tctcatcagctagcttagcaacatgaccatacatggagtagtacacgacgtagaccttga 95
Query: 830 ccgccattggag 841
||||||| ||||
Sbjct: 94 ccgccatgggag 83
>gb|BM374970.1|BM374970 EBma05_SQ003_O01_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ003_O01 5', mRNA sequence
Length = 289
Score = 198 bits (100), Expect = 2e-049
Identities = 206/240 (85%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 391 ccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgct 450
||||| ||||| ||||| ||||||||||||||||||||||| |||| |||||| | |||
Sbjct: 289 ccgaacgtgtaccccaccggcacgaacaccatgccgtggtgggtcagctgggtcactgct 230
Query: 451 gtcaacgctgtcgtctcctggccaccaccctgggat-ccagtgcagaagaagacgccggc 509
|||| || ||||||||||| || || ||||| | | || |||| |||||| ||||| ||
Sbjct: 229 gtcagcggcgtcgtctcctgcccgccgccctgaggtgcccgtgctgaagaacacgcccgc 170
Query: 510 aggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgcctt 569
||||||||||| ||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 169 cggcttgccggccaggctctgctccctccacagcccgcccgtcgcgtcgaagaacgcctt 110
Query: 570 catctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctc 629
||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 109 catctgcgccgccatcatgccgaacctcgtcgggaacccgaacaggacgccgtcggcctc 50
>gb|BQ469266.1|BQ469266 HM03O09r HM Hordeum vulgare subsp. vulgare cDNA clone HM03O09
5-PRIME, mRNA sequence
Length = 479
Score = 178 bits (90), Expect = 2e-043
Identities = 177/206 (85%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 237 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 178
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 177 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 118
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
|| |||||||| | ||||||| ||||||||||||| ||||||||||| || || || |||
Sbjct: 117 ccaccctgaactttgtccatgtcgaacagcttggcaccgaaggtgtacccgacgggaacg 58
Query: 415 aacaccatgccgtggtgcgtcaactg 440
|| |||||||||||||| ||||||||
Sbjct: 57 aaaaccatgccgtggtgagtcaactg 32
>gb|BQ661537.1|BQ661537 HM03O09u HM Hordeum vulgare subsp. vulgare cDNA clone HM03O09
3-PRIME, mRNA sequence
Length = 479
Score = 178 bits (90), Expect = 2e-043
Identities = 177/206 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 243 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 302
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 303 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 362
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
|| |||||||| | ||||||| ||||||||||||| ||||||||||| || || || |||
Sbjct: 363 ccaccctgaactttgtccatgtcgaacagcttggcaccgaaggtgtacccgacgggaacg 422
Query: 415 aacaccatgccgtggtgcgtcaactg 440
|| |||||||||||||| ||||||||
Sbjct: 423 aaaaccatgccgtggtgagtcaactg 448
>gb|BG300671.1|BG300671 HVSMEb0017O17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017O17f, mRNA sequence
Length = 955
Score = 174 bits (88), Expect = 3e-042
Identities = 268/328 (81%)
Strand = Plus / Minus
Query: 514 ttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatc 573
|||||||| |||||||||||| |||| ||||| |||| || | |||||||||||||||
Sbjct: 417 ttgccggccaggctctgctccatccacagcccgacagtagcgttgaagaacgccttcatg 358
Query: 574 tgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcg 633
||||| |||||||| || ||||| |||||||||| ||| |||| ||||||||||| ||
Sbjct: 357 tgcgccgccatcatgccaaaccttgttgggaaccggaacaggacgccgtcggcctccgcc 298
Query: 634 agttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagc 693
|| || || || | ||| || |||||||| | ||| || || || |||||||| |||||
Sbjct: 297 agctcctgaggggagatcaccggcacgtcggtcttgggtggggcacccatcttgccaagg 238
Query: 694 acttcctcagggagggtttcagggacctgccatgttttagcttcaacaccttcaacagac 753
|||||||| ||| | |||||||| ||||| |||| | || || |||||||||||
Sbjct: 237 acttcctcgttcaggatctcagggacttgccacactttaacctccacgccttcaacagag 178
Query: 754 gaggcacctttctggatctcttcagctagtttgccaacatgtccatacatggaatagtac 813
|| |||||||||| |||||| |||||||| || ||||||| ||||||||||| ||||||
Sbjct: 177 gaagcacctttcttgatctcatcagctagcttagcaacatgaccatacatggagtagtac 118
Query: 814 acgacgtagaccttaaccgccattggag 841
|||| ||||||||| |||||||| ||||
Sbjct: 117 acgatgtagaccttgaccgccatgggag 90
>gb|BM440840.2|BM440840 EBca01_SQ001_F05_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ001_F05 5', mRNA sequence
Length = 330
Score = 168 bits (85), Expect = 2e-040
Identities = 175/205 (85%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| || || |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 220 cccttgagttttttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 161
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 160 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 101
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
|| |||||||| | ||||||| ||||||||||||| ||||||||||| || || || |||
Sbjct: 100 ccaccctgaactttgtccatgtcgaacagcttggcaccgaaggtgtacccgacgggaacg 41
Query: 415 aacaccatgccgtggtgcgtcaact 439
|| |||||||||||||| |||||||
Sbjct: 40 aaaaccatgccgtggtgagtcaact 16
>gb|BG299768.1|BG299768 HVSMEa0021L17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021L17f, mRNA sequence
Length = 572
Score = 123 bits (62), Expect = 1e-026
Identities = 242/302 (80%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 565 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 506
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatc 447
|||||| ||||| || || |||||||||| ||||||||| ||||||| |||||| |
Sbjct: 505 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgggtcacg 446
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccg 507
|| || | || || |||||||| || || ||||||| || ||| ||||||||||||
Sbjct: 445 gccgtgagggccgtggtctcctgcccgccgccctgggtgcccgtggcgaagaagacgccc 386
Query: 508 gcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgcc 567
|| ||||| || | ||||||||| || |||||| || || |||| |||||||| |||
Sbjct: 385 gcgggctttcccgagaggctctgcgcctgccagaggccgccggtggagtcgaagaaggcc 326
Query: 568 ttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcc 627
||||||||||| |||||||| ||||||| ||| || || ||||| ||||| |||||||||
Sbjct: 325 ttcatctgcgccgccatcatgccgaaccgcgtcggaaagccgaacaggatgccgtcggcc 266
Query: 628 tc 629
||
Sbjct: 265 tc 264
>gb|AL503647.1|AL503647 AL503647 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O22T 5', mRNA sequence
Length = 700
Score = 109 bits (55), Expect = 2e-022
Identities = 242/303 (79%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 570 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 511
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatc 447
|||||| ||||| || || |||||||||| ||||||||| ||||||| |||||| |
Sbjct: 510 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgggtcacg 451
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacg-cc 506
|| || | || || |||||||| || || ||||||| || ||| |||||||||| ||
Sbjct: 450 gccgtgagggccgtggtctcctgcccgccgccctgggtgcccgtggcgaagaagacggcc 391
Query: 507 ggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgc 566
|| ||||| || | ||||||||| || |||||| || || |||| |||||||| ||
Sbjct: 390 cgcgggctttcccgagaggctctgcgcctgccagaggccgccggtggagtcgaagaaggc 331
Query: 567 cttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggc 626
|||||||||||| |||||||| ||||||| ||| || || ||||| ||||| ||||||||
Sbjct: 330 cttcatctgcgccgccatcatgccgaaccgcgtcggaaagccgaacaggatgccgtcggc 271
Query: 627 ctc 629
|||
Sbjct: 270 ctc 268
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 238 ttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 665 ttgagcttcttggcaatgccggcaaagtacttgccctggtg 625
>gb|BI957748.1|BI957748 HVSMEn0011A02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011A02f, mRNA sequence
Length = 886
Score = 109 bits (55), Expect = 2e-022
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||| ||| ||| |||||||||
Sbjct: 221 cccttgagtttcttcgcgatgcccgcgaaatactgaccctgggggagggcatgctccagc 280
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || ||||||| || ||||| |||||||| ||||||
Sbjct: 281 tccatctcagatggccacctcgaaccatcggcgggaaatgtgcctgcgccgtacgggctg 340
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaagg 397
|| |||||||| | ||||||| ||||||| ||||| |||||||
Sbjct: 341 ccaccctgaactttgtccatgtcgaacaggttggcaccgaagg 383
>gb|AV911241.1|AV911241 AV911241 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i08 3', mRNA sequence
Length = 349
Score = 109 bits (55), Expect = 2e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 214 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 273
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 274 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 333
Query: 355 ccgccctgaac 365
|| ||||||||
Sbjct: 334 ccaccctgaac 344
>gb|AV911423.1|AV911423 AV911423 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13c09 3', mRNA sequence
Length = 293
Score = 109 bits (55), Expect = 2e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 158 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 217
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 218 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 277
Query: 355 ccgccctgaac 365
|| ||||||||
Sbjct: 278 ccaccctgaac 288
>gb|AV911857.1|AV911857 AV911857 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1m15 3', mRNA sequence
Length = 310
Score = 109 bits (55), Expect = 2e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 175 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 234
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 235 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 294
Query: 355 ccgccctgaac 365
|| ||||||||
Sbjct: 295 ccaccctgaac 305
>gb|BI948142.1|BI948142 HVSMEl0008F18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008F18f, mRNA sequence
Length = 1037
Score = 105 bits (53), Expect = 3e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 409 ggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcc 468
|||||||||| ||||||||||||||||| ||| || | || || | |||||| ||||||
Sbjct: 501 ggcacgaacagcatgccgtggtgcgtcagctgcgtcacggcggtgagcgctgtggtctcc 442
Query: 469 tggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctc 528
||||| || ||||||| || ||| |||||| ||| | || ||||||||||| ||| |
Sbjct: 441 tggccgccgccctgggtgcccgtggcgaagaaaacggccgcgggcttgccggcgagggac 382
Query: 529 tgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcatt 588
|||| | |||||| || || |||| || ||||| |||||||||||||| ||||||||
Sbjct: 381 tgctgctgccagaggccgcctgtggagtcaaagaaggccttcatctgcgcggccatcatg 322
Query: 589 ccgaacctcgttgggaacccgaagaggattccgtcggcctc 629
||||||| ||| ||||| ||||| ||||| | |||||||||
Sbjct: 321 ccgaaccgcgtcgggaagccgaacaggatgctgtcggcctc 281
>gb|BF266201.2|BF266201 HV_CEa0014H09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014H09f, mRNA sequence
Length = 537
Score = 103 bits (52), Expect = 1e-020
Identities = 178/220 (80%)
Strand = Plus / Minus
Query: 409 ggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcc 468
|||||||||| ||||||||||||||||| ||| || | || || | |||||| ||||||
Sbjct: 487 ggcacgaacagcatgccgtggtgcgtcagctgcgtcacggcggtgagcgctgtggtctcc 428
Query: 469 tggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctc 528
||||| || ||||||| || ||| |||||| ||| | || ||||||||||| ||| |
Sbjct: 427 tggccgccgccctgggtgcccgtggcgaagaaaacggccgcgggcttgccggcgagggac 368
Query: 529 tgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcatt 588
|||| | |||||| || || |||| || ||||| |||||||||||||| | ||||||
Sbjct: 367 tgctgctgccagaggccgcctgtggagtcaaagaaggccttcatctgcgcggtcatcatg 308
Query: 589 ccgaacctcgttgggaacccgaagaggattccgtcggcct 628
||||||| ||| ||||| ||||| ||||| ||||||||||
Sbjct: 307 ccgaaccgcgtcgggaagccgaacaggatgccgtcggcct 268
>gb|BF260943.3|BF260943 HVSMEf0023F15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F15f, mRNA sequence
Length = 558
Score = 101 bits (51), Expect = 4e-020
Identities = 222/279 (79%)
Strand = Plus / Minus
Query: 326 cggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagct 385
||||||| |||||||| ||||| ||||||||||||| |||| ||| | | ||||||
Sbjct: 279 cggcgaaggtgccggccccgtacgggctgccgcccttgacctcgtcgacggcgaacatgc 220
Query: 386 tggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtga 445
||||||| |||||||| || |||||||| | ||||||||||||||| | ||| ||||
Sbjct: 219 cggcgccgtgcgtgtagccgacgggcacgaagagcatgccgtggtgcgtgagctgcgtga 160
Query: 446 tcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgc 505
|| || | || || ||||||||||| || ||||| | || ||| |||||||||||
Sbjct: 159 cggccgtgagggccgtggtctcctggccgccgccctgcgtgcccgtggcgaagaagacgc 100
Query: 506 cggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacg 565
| || ||||||||||| ||| |||| || |||||| || || |||| |||||||| |
Sbjct: 99 ccgccggcttgccggcgagggactgcgcctgccagaggccgcccgtggagtcgaagaagg 40
Query: 566 ccttcatctgcgctgccatcattccgaacctcgttggga 604
||||||||||||| |||||||| ||||||| ||| ||||
Sbjct: 39 ccttcatctgcgccgccatcatgccgaaccgcgtcggga 1
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 236 ccttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 372 ccttgagcttcttggcgacgccggcgaagtacttcccctggtg 330
>gb|BF254992.2|BF254992 HVSMEf0005K05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005K05f, mRNA sequence
Length = 594
Score = 97.6 bits (49), Expect = 7e-019
Identities = 187/233 (80%)
Strand = Plus / Minus
Query: 397 gtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaac 456
|||||||| || |||||||| | ||||||||||||||| | ||| |||| || || |
Sbjct: 517 gtgtagccgacgggcacgaagagcatgccgtggtgcgtgagctgcgtgacggccgtgagg 458
Query: 457 gctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttg 516
|| || ||||||||||| || ||||| | || ||| |||||||||||| || ||||||
Sbjct: 457 gccgtggtctcctggccgccgccctgcgtgcccgtggcgaagaagacgcccgcgggcttg 398
Query: 517 ccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgc 576
||||| ||| |||| | |||||| || || |||| |||||||| ||||||||||||
Sbjct: 397 ccggcgagggactgcgcttgccagaggccgcccgtggagtcgaagaaggccttcatctgc 338
Query: 577 gctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctc 629
|| |||||||| ||||||| ||| ||||| ||||| |||| |||||||||||
Sbjct: 337 gccgccatcatgccgaaccgcgtcgggaagccgaacaggacgccgtcggcctc 285
>gb|BM443390.2|BM443390 EBro02_SQ003_O10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_O10 5', mRNA sequence
Length = 142
Score = 95.6 bits (48), Expect = 3e-018
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 559 aagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggatt 618
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 142 aagaacgccttcatctgcgccgccatcatgccgaacctcgtcgggaacccgaacaggacg 83
Query: 619 ccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcg 678
||||||||||| || || || || || | ||| || |||||||| | ||| || || |||
Sbjct: 82 ccgtcggcctccgccagctcgtgaggggagatcaccggcacgtcggtcttgggaggggcg 23
Query: 679 cccatctt 686
||||||||
Sbjct: 22 cccatctt 15
>gb|AV909530.1|AV909530 AV909530 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13c09 5', mRNA sequence
Length = 361
Score = 93.7 bits (47), Expect = 1e-017
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 125 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 66
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
||| ||| ||||||||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 65 tcctnctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgccgtacgggctg 6
Query: 355 cc 356
||
Sbjct: 5 cc 4
>gb|BM369928.2|BM369928 EBro08_SQ002_F21_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_F21 5', mRNA sequence
Length = 491
Score = 93.7 bits (47), Expect = 1e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||||||||| || ||||| | || ||| |||||||||||| || |||||||||||
Sbjct: 432 gtctcctggccgccgccctgcgtgcccgtggcgaagaagacgcccgccggcttgccggcg 373
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||| |||| || |||||| || || |||| |||||||| |||||||||||||| |||
Sbjct: 372 agggactgcgcctgccagaggccgcccgtggagtcgaagaaggccttcatctgcgccgcc 313
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctc 629
||||| ||||||| ||| ||||| ||||| |||| |||||||||||
Sbjct: 312 atcatgccgaaccgcgtcgggaagccgaacaggacgccgtcggcctc 266
>gb|BF260484.1|BF260484 HVSMEf0022C02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022C02f, mRNA sequence
Length = 851
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Minus
Query: 495 gaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggc 554
|||||||||||| || ||||| || | ||||||||| || |||||| || || ||||
Sbjct: 566 gaagaagacgcccgcgggctttcccgagaggctctgcgcctgccagaggccgccggtgga 507
Query: 555 atcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagag 614
|||||||| |||||||||||||| |||||||| ||||||| ||| || || ||||| ||
Sbjct: 506 gtcgaagaaggccttcatctgcgccgccatcatgccgaaccgcgtcggaaagccgaacag 447
Query: 615 gattccgtcggcctc 629
||| |||||||||||
Sbjct: 446 gatgccgtcggcctc 432
>gb|CB877294.1|CB877294 HP04E23T HP Hordeum vulgare subsp. vulgare cDNA clone HP04E23
5-PRIME, mRNA sequence
Length = 606
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Minus
Query: 495 gaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggc 554
|||||||||||| || ||||| || | ||||||||| || |||||| || || ||||
Sbjct: 408 gaagaagacgcccgcgggctttcccgagaggctctgcgcctgccagaggccgccggtgga 349
Query: 555 atcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagag 614
|||||||| |||||||||||||| |||||||| ||||||| ||| || || ||||| ||
Sbjct: 348 gtcgaagaaggccttcatctgcgccgccatcatgccgaaccgcgtcggaaagccgaacag 289
Query: 615 gattccgtcggcctc 629
||| |||||||||||
Sbjct: 288 gatgccgtcggcctc 274
Score = 67.9 bits (34), Expect = 6e-010
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 575 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 516
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgg 441
|||||| ||||| || || |||||||||| ||||||||| ||||||| ||||
Sbjct: 515 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgg 462
>gb|BG416893.2|BG416893 HVSMEk0015B16f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015B16f, mRNA sequence
Length = 366
Score = 83.8 bits (42), Expect = 1e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 110 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 51
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgcc 344
|||| ||| ||||||||||| || |||||||| || ||||| |||||
Sbjct: 50 tccatctcagatggccacctcgaaccatcggcggcaaatgtgcctgcgcc 1
>gb|AV909351.1|AV909351 AV909351 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12i08 5', mRNA sequence
Length = 145
Score = 77.8 bits (39), Expect = 6e-013
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
|||||||| ||||| |||||||| ||||| |||| |||||||||||||| |||||||||
Sbjct: 98 cccttgagtttcttcgcgatgcccgcgaaatactgaccctggtggaaggcatgctccagc 39
Query: 295 tccacctcgctcggccacctcgagccgtcggcggc 329
|||| ||| ||||||||||| || ||||||||
Sbjct: 38 tccatctcagatggccacctcgaaccatcggcggc 4
>gb|BM443151.2|BM443151 EBro02_SQ002_M05_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_M05 5', mRNA sequence
Length = 384
Score = 77.8 bits (39), Expect = 6e-013
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||| || |||||| || || |||| |||||||| |||||||||||||| |||
Sbjct: 374 aggctctgcgcctgccagaggccgccggtggagtcgaagaaggccttcatctgcgccgcc 315
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctc 629
||||| ||||||| ||| || || ||||| ||||| |||||||||||
Sbjct: 314 atcatgccgaaccgcgtcggaaagccgaacaggatgccgtcggcctc 268
>gb|AL501067.1|AL501067 AL501067 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O22u 3', mRNA sequence
Length = 556
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 318 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 377
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||| ||||| || || |||||||||| ||||||||| ||||||| ||||||
Sbjct: 378 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgggt 433
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 238 ttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 225 ttgagcttcttggcaatgccggcaaagtacttgccctggtg 265
>gb|AJ435127.1|AJ435127 AJ435127 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028C08F2, mRNA sequence
Length = 528
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 128 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 69
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||| ||||| || || |||||||||| ||||||||| ||||||| ||||||
Sbjct: 68 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgggt 13
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 238 ttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 221 ttgagcttcttggcaatgccggcaaagtacttgccctggtg 181
>gb|AJ462473.1|AJ462473 AJ462473 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028C08F1, mRNA sequence
Length = 240
Score = 71.9 bits (36), Expect = 4e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||| |||||||| ||||| ||||||||||||| |||| ||||||| |||||| |
Sbjct: 120 gcgaaggtgccggcaccgtacgggctgccgcccttgacctcgtccatggcgaacatgccg 61
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||| ||||| || || |||||||||| ||||||||| ||||||| ||||||
Sbjct: 60 gcgccgtgcgtgtacccgaccggcacgaacagcatgccgtgatgcgtcagctgggt 5
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 238 ttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 213 ttgagcttcttggcaatgccggcaaagtacttgccctggtg 173
>gb|BF622794.2|BF622794 HVSMEa0008O10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008O10f, mRNA sequence
Length = 711
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 495 gaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggc 554
|||||||||||| || ||||| || | ||||||||| || ||| || || || ||||
Sbjct: 397 gaagaagacgcccgcgggctttcccgagaggctctgcgcctgccaaaggccgccggtgga 338
Query: 555 atcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagag 614
|||||||| |||||||| ||||| |||||||| ||||||| ||| || || ||||| ||
Sbjct: 337 gtcgaagaaggccttcatttgcgccgccatcatgccgaaccgcgtcggaaagccgaacag 278
Query: 615 gattccgtcggcctc 629
||| |||||||||||
Sbjct: 277 gatgccgtcggcctc 263
>gb|BF621463.3|BF621463 HVSMEa0011B06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011B06f, mRNA sequence
Length = 805
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 236 ccttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 116 ccttgagcttcttggcgacgccggcgaagtacttcccctggtg 158
Score = 60.0 bits (30), Expect = 1e-007
Identities = 210/270 (77%)
Strand = Plus / Plus
Query: 326 cggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagct 385
||||||| |||||||| ||||| ||||||||||||| |||| ||| | | ||||||
Sbjct: 209 cggcgaaggtgccggccccgtacgggctgccgcccttgacctcgtcgacggcgaacatgc 268
Query: 386 tggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtga 445
||||||| |||||||| || |||||||| | ||||||||||||||| | ||| ||||
Sbjct: 269 cggcgccgtgcgtgtagccgacgggcacgaagagcatgccgtggtgcgtgagctgcgtga 328
Query: 446 tcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgc 505
|| || | || || ||||||||||| | ||||| | || ||| |||||||||||
Sbjct: 329 cggccgtgagggccgtggtctcctggccgacgccctgcgtgcccgtggcgaagaagacgc 388
Query: 506 cggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacg 565
| || ||||||||||| ||| |||| || ||| || || | |||| || |||||||
Sbjct: 389 ccgccggcttgccggcgagggactgcgcctgccataggccggccgtggagtcaaagaacg 448
Query: 566 ccttcatctgcgctgccatcattccgaacc 595
|||| |||||||| | |||||| |||||||
Sbjct: 449 cctttatctgcgccgtcatcatgccgaacc 478
>gb|BQ468061.1|BQ468061 HR01N04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01N04
5-PRIME, mRNA sequence
Length = 329
Score = 67.9 bits (34), Expect = 6e-010
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 241 agcttcttggcgatgcctgcgaagtacttcccctggtggaag 282
||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 52 agcttcttggcgatgccggcgaagtacttgccctggtggaag 11
>gb|BF255030.2|BF255030 HVSMEf0005L23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005L23f, mRNA sequence
Length = 817
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 556 tcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagagg 615
|||||||| |||||||| ||||| |||||||| |||| || ||| || || ||||| |||
Sbjct: 433 tcgaagaaggccttcatttgcgccgccatcatgccgatccgcgtcggaaagccgaacagg 374
Query: 616 attccgtcggcctc 629
|| |||||||||||
Sbjct: 373 atgccgtcggcctc 360
>gb|BI951063.1|BI951063 HVSMEl0024E03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024E03f, mRNA sequence
Length = 871
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 565 gccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcg 624
|||||||||||| | |||||||| |||| || ||| ||||| ||||| ||||| ||||||
Sbjct: 345 gccttcatctgcccggccatcatgccgacccgcgtcgggaagccgaacaggatgccgtcg 286
Query: 625 gc 626
||
Sbjct: 285 gc 284
>gb|BQ660284.1|BQ660284 HI01M13w HI Hordeum vulgare subsp. vulgare cDNA clone HI01M13
3-PRIME, mRNA sequence
Length = 523
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 232 gaacccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggc 284
|||||||| |||||||| ||||| || || ||||| ||||| |||||||||||
Sbjct: 265 gaacccttaagcttctttgcgatcccggcaaagtatttcccttggtggaaggc 317
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,738
Number of Sequences: 312970
Number of extensions: 109738
Number of successful extensions: 35155
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35031
Number of HSP's gapped (non-prelim): 89
length of query: 962
length of database: 175,134,539
effective HSP length: 19
effective length of query: 943
effective length of database: 169,188,109
effective search space: 159544386787
effective search space used: 159544386787
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)