BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL500907.1|AL500907 AL500907 Hordeum vulgare Barke roots... 404 e-111
gb|BF255517.3|BF255517 HVSMEf0007B04f Hordeum vulgare seedl... 404 e-111
gb|AV917497.1|AV917497 AV917497 K. Sato unpublished cDNA li... 404 e-111
gb|AV920228.1|AV920228 AV920228 K. Sato unpublished cDNA li... 404 e-111
gb|AV920250.1|AV920250 AV920250 K. Sato unpublished cDNA li... 404 e-111
gb|BJ465487.1|BJ465487 BJ465487 K. Sato unpublished cDNA li... 396 e-109
gb|CK125072.1|CK125072 BES1824106i12 BES1824 Hordeum vulgar... 377 e-103
gb|BM099190.2|BM099190 EBes01_SQ002_H21_R embryo sac, 4-6 D... 371 e-101
gb|BF621259.1|BF621259 HVSMEa0006D21f Hordeum vulgare seedl... 331 2e-089
gb|BJ467628.1|BJ467628 BJ467628 K. Sato unpublished cDNA li... 331 2e-089
gb|BG416499.1|BG416499 HVSMEk0012J14f Hordeum vulgare testa... 323 4e-087
gb|AJ463546.1|AJ463546 AJ463546 S00002 Hordeum vulgare subs... 321 2e-086
gb|BM369508.2|BM369508 EBem07_SQ003_M17_R embryo, 28 DPA, n... 317 2e-085
gb|AL503495.1|AL503495 AL503495 Hordeum vulgare Barke roots... 283 3e-075
gb|BU981802.1|BU981802 HA24K23r HA Hordeum vulgare subsp. v... 276 8e-073
gb|BG344397.1|BG344397 HVSMEg0009C10f Hordeum vulgare pre-a... 272 1e-071
gb|BU989147.1|BU989147 HF19P01r HF Hordeum vulgare subsp. v... 260 5e-068
gb|AV915094.1|AV915094 AV915094 K. Sato unpublished cDNA li... 230 4e-059
gb|AV915117.1|AV915117 AV915117 K. Sato unpublished cDNA li... 226 7e-058
gb|BE060748.3|BE060748 HVSMEg0013D16f Hordeum vulgare pre-a... 216 7e-055
gb|BQ657113.1|BQ657113 HA09J24u HA Hordeum vulgare subsp. v... 202 1e-050
gb|BU969980.1|BU969980 HB13D16r BC Hordeum vulgare subsp. v... 192 1e-047
gb|BU983729.1|BU983729 HA30N16r HA Hordeum vulgare subsp. v... 186 6e-046
gb|BU986184.1|BU986184 HF09O20r HF Hordeum vulgare subsp. v... 184 2e-045
gb|AJ436435.1|AJ436435 AJ436435 S00002 Hordeum vulgare subs... 151 3e-035
gb|CB882493.1|CB882493 HL02A08w HL Hordeum vulgare subsp. v... 147 5e-034
gb|CK123982.1|CK123982 BES1824106f18 BES1824 Hordeum vulgar... 147 5e-034
gb|AL505462.1|AL505462 AL505462 Hordeum vulgare Barke roots... 145 2e-033
gb|BQ465083.1|BQ465083 HU02J14r HU Hordeum vulgare subsp. v... 145 2e-033
gb|BQ471183.1|BQ471183 HV01H06T HV Hordeum vulgare subsp. v... 145 2e-033
gb|CA015435.1|CA015435 HT14E23r HT Hordeum vulgare subsp. v... 145 2e-033
gb|BJ549410.1|BJ549410 BJ549410 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ549610.1|BJ549610 BJ549610 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ549849.1|BJ549849 BJ549849 K. Sato unpublished cDNA li... 145 2e-033
gb|CK123056.1|CK123056 BES1824101p18 BES1824 Hordeum vulgar... 145 2e-033
gb|CA032624.1|CA032624 HX13L05r HX Hordeum vulgare subsp. v... 141 3e-032
gb|CV062611.1|CV062611 BNEL81a1 Barley EST endosperm librar... 139 1e-031
gb|BQ664053.1|BQ664053 HV01H06w HV Hordeum vulgare subsp. v... 137 5e-031
gb|CA025362.1|CA025362 HZ51P06r HZ Hordeum vulgare subsp. v... 135 2e-030
gb|BU980268.1|BU980268 HA20C21r HA Hordeum vulgare subsp. v... 133 8e-030
gb|BG343229.2|BG343229 HVSMEg0005C16f Hordeum vulgare pre-a... 129 1e-028
gb|BU976147.1|BU976147 HA03D15r HA Hordeum vulgare subsp. v... 129 1e-028
gb|BU987698.1|BU987698 HF15I04r HF Hordeum vulgare subsp. v... 129 1e-028
gb|CA015415.1|CA015415 HT14D20r HT Hordeum vulgare subsp. v... 125 2e-027
gb|BQ460449.1|BQ460449 HA09J24r HA Hordeum vulgare subsp. v... 123 8e-027
gb|AL502727.1|AL502727 AL502727 Hordeum vulgare Barke roots... 117 5e-025
gb|BM376084.2|BM376084 EBma01_SQ002_E21_R maternal, 4 DPA, ... 117 5e-025
gb|AJ435114.1|AJ435114 AJ435114 S00002 Hordeum vulgare subs... 107 4e-022
gb|BQ663963.1|BQ663963 HU04M21u HU Hordeum vulgare subsp. v... 107 4e-022
gb|BQ465827.1|BQ465827 HU04M21r HU Hordeum vulgare subsp. v... 105 2e-021
gb|CA025118.1|CA025118 HZ51E05r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|CA025207.1|CA025207 HZ51I05r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|CA029545.1|CA029545 HZ65I11r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|CA029693.1|CA029693 HZ65O24r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|CA025053.1|CA025053 HZ51B09r HZ Hordeum vulgare subsp. v... 100 1e-019
gb|BE060252.3|BE060252 HVSMEg0011L20f Hordeum vulgare pre-a... 94 7e-018
gb|BI780955.2|BI780955 EBma05_SQ001_K18_R maternal, 12 DPA,... 94 7e-018
gb|BM096569.2|BM096569 EBma05_SQ001_M03_R maternal, 12 DPA,... 94 7e-018
gb|BG365123.1|BG365123 HVSMEi0001G06f Hordeum vulgare 20 DA... 90 1e-016
gb|BI955579.1|BI955579 HVSMEm0023K08f Hordeum vulgare green... 90 1e-016
gb|BQ664645.1|BQ664645 HV04E13u HV Hordeum vulgare subsp. v... 80 1e-013
gb|BM100789.2|BM100789 EBpi01_SQ002_A02_R pistil, 1 DPA, no... 74 6e-012
gb|BJ460743.1|BJ460743 BJ460743 K. Sato unpublished cDNA li... 72 2e-011
gb|BJ549142.1|BJ549142 BJ549142 K. Sato unpublished cDNA li... 72 2e-011
gb|CV054680.1|CV054680 BNEL112b2 Barley EST endosperm libra... 72 2e-011
gb|BQ663426.1|BQ663426 HU02J14u HU Hordeum vulgare subsp. v... 70 1e-010
gb|BI953063.1|BI953063 HVSMEm0009K24f Hordeum vulgare green... 66 2e-009
gb|BQ472055.1|BQ472055 HV04E13r HV Hordeum vulgare subsp. v... 66 2e-009
gb|AL500133.1|AL500133 AL500133 Hordeum vulgare Barke etiol... 60 9e-008
gb|BF255589.3|BF255589 HVSMEf0007E08f Hordeum vulgare seedl... 60 9e-008
gb|AJ434631.1|AJ434631 AJ434631 S00002 Hordeum vulgare subs... 60 9e-008
gb|BU995651.1|BU995651 HM10O19r HM Hordeum vulgare subsp. v... 60 9e-008
gb|CB881803.1|CB881803 HM10O19w HM Hordeum vulgare subsp. v... 60 9e-008
gb|BE411848.1|BE411848 ISC009.H07F990902 ITEC ISC Barley Le... 58 4e-007
gb|AL509600.1|AL509600 AL509600 Hordeum vulgare Barke devel... 58 4e-007
gb|BG369037.2|BG369037 HVSMEi0022I07f Hordeum vulgare 20 DA... 58 4e-007
gb|BM098158.2|BM098158 EBpi03_SQ002_L10_R pistil, 4 DPA, no... 58 4e-007
gb|BI779267.2|BI779267 EBro01_SQ003_I02_R root, 3 week, hyd... 58 4e-007
gb|CA005290.1|CA005290 HU11D01u HU Hordeum vulgare subsp. v... 58 4e-007
gb|CA022625.1|CA022625 HZ43O03r HZ Hordeum vulgare subsp. v... 54 6e-006
gb|CA027157.1|CA027157 HZ58B02r HZ Hordeum vulgare subsp. v... 54 6e-006
gb|CV058623.1|CV058623 BNEL3A6 Barley EST endosperm library... 52 2e-005
gb|BJ453194.1|BJ453194 BJ453194 K. Sato unpublished cDNA li... 50 9e-005
gb|BU981309.1|BU981309 HA23D21r HA Hordeum vulgare subsp. v... 50 9e-005
gb|BU999664.1|BU999664 HI15E06r HI Hordeum vulgare subsp. v... 50 9e-005
gb|CA025997.1|CA025997 HZ53M10r HZ Hordeum vulgare subsp. v... 50 9e-005
gb|CK122833.1|CK122833 BES1824106b12 BES1824 Hordeum vulgar... 50 9e-005
gb|AL506182.1|AL506182 AL506182 Hordeum vulgare Barke devel... 46 0.001
gb|BE216450.2|BE216450 HV_CEb0010I11f Hordeum vulgare seedl... 46 0.001
gb|BF628899.2|BF628899 HVSMEb0009C03f Hordeum vulgare seedl... 44 0.006
gb|BG344957.1|BG344957 HVSMEg0018A19f Hordeum vulgare pre-a... 44 0.006
gb|BF064660.2|BF064660 HV_CEb0016M11f Hordeum vulgare seedl... 44 0.006
gb|BQ460776.1|BQ460776 HA05P11r HA Hordeum vulgare subsp. v... 44 0.006
gb|BE411215.1|BE411215 ISC003.C05F990525 ITEC ISC Barley Le... 42 0.022
gb|BQ757832.1|BQ757832 EBem10_SQ005_F23_R embryo, 2 Day ger... 42 0.022
gb|CA028967.1|CA028967 HZ63M09r HZ Hordeum vulgare subsp. v... 42 0.022
gb|CA008510.1|CA008510 HU11D01r HU Hordeum vulgare subsp. v... 40 0.087
gb|CK123091.1|CK123091 BES1824102b07 BES1824 Hordeum vulgar... 40 0.087
>gb|AL500907.1|AL500907 AL500907 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02F13u 3', mRNA sequence
Length = 652
Score = 404 bits (204), Expect = e-111
Identities = 312/348 (89%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 275 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 334
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 335 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 394
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 395 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 454
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 514
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 515 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 574
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 575 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 622
>gb|BF255517.3|BF255517 HVSMEf0007B04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007B04f, mRNA sequence
Length = 840
Score = 404 bits (204), Expect = e-111
Identities = 312/348 (89%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 597 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 538
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 537 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 478
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 477 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 418
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 417 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 358
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 357 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 298
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 297 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 250
>gb|AV917497.1|AV917497 AV917497 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10c15 3', mRNA sequence
Length = 686
Score = 404 bits (204), Expect = e-111
Identities = 312/348 (89%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 319 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 378
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 379 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 438
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 439 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 498
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 558
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 559 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 618
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 619 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 666
>gb|AV920228.1|AV920228 AV920228 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n10 3', mRNA sequence
Length = 626
Score = 404 bits (204), Expect = e-111
Identities = 312/348 (89%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 212 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 271
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 272 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 331
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 332 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 391
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 392 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 451
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 452 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 511
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 512 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 559
>gb|AV920250.1|AV920250 AV920250 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9p06 3', mRNA sequence
Length = 606
Score = 404 bits (204), Expect = e-111
Identities = 312/348 (89%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 193 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 252
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 253 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 312
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 313 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 372
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 432
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 433 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 492
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 493 aaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 540
>gb|BJ465487.1|BJ465487 BJ465487 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b24 5', mRNA sequence
Length = 667
Score = 396 bits (200), Expect = e-109
Identities = 302/336 (89%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 355 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 296
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 295 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 236
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 235 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 176
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 175 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 116
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 115 agaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatc 56
Query: 593 taccaggtatactacagcatcaacctttgcgtagta 628
|||| ||||||||||||||||||| ||||||||||
Sbjct: 55 aaccaagtatactacagcatcaacccttgcgtagta 20
>gb|CK125072.1|CK125072 BES1824106i12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I126 5-PRIME, mRNA sequence
Length = 795
Score = 377 bits (190), Expect = e-103
Identities = 312/350 (89%), Gaps = 2/350 (0%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcg-ccgtagcccatcttgcgaa 351
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| |
Sbjct: 763 gccctacttgatgtactgcgagacccacttaaacccatccaccatagcccatcttgcgga 704
Query: 352 caacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgc 411
|||||||||||||||| |||||||| ||||||||||||||||| |||| || |||||||
Sbjct: 703 caacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgc 644
Query: 412 cctt-cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggca 470
|||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 643 ccttncccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggct 584
Query: 471 gcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatca 530
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 583 gcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatca 524
Query: 531 tctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgca 590
|| || |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 523 tcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgca 464
Query: 591 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|| |||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 463 tcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 414
>gb|BM099190.2|BM099190 EBes01_SQ002_H21_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_H21 5', mRNA sequence
Length = 725
Score = 371 bits (187), Expect = e-101
Identities = 303/342 (88%)
Strand = Plus / Minus
Query: 299 cttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacact 358
||||||||| || ||||||||||| || ||||| || |||||||||||||| ||||||||
Sbjct: 725 cttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggacaacact 666
Query: 359 gcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttccc 418
||||||||| |||||||| ||||||||||||||||| |||| || |||| ||||||||
Sbjct: 665 gcacatgaacacctcaagaggccggacattggagtcaacaagattcacctgccccttccc 606
Query: 419 ggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacgg 478
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 605 agttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcatatgg 546
Query: 479 gatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacag 538
||| |||||||| |||||||||||||||||||| ||||| ||||||||||||| || ||
Sbjct: 545 gatgtcaatcttattgccaaggatgagaaatgggacattgnccaaggaatcatcagaaag 486
Query: 539 gagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccag 598
|||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||||||||||
Sbjct: 485 gagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatctaccaa 426
Query: 599 gtatactacagcatcaacctttgcgtagtaatccttccagac 640
||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 425 gtatactacagcatcaacccttgcgtagtagtctttccagac 384
>gb|BF621259.1|BF621259 HVSMEa0006D21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006D21f, mRNA sequence
Length = 843
Score = 331 bits (167), Expect = 2e-089
Identities = 302/346 (87%), Gaps = 1/346 (0%)
Strand = Plus / Minus
Query: 295 cctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaa 354
||||||||||| | || | ||||||||| || ||||| || || |||||||||| ||||
Sbjct: 761 cctacttgatggactgcgggacccacttaaacccatcacca-aggccatcttgcggacaa 703
Query: 355 cactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccct 414
|||||||||||||| ||||||| ||||||||||||||||| |||| || || |||||||
Sbjct: 702 cactgcacatgaaagcctcaagaggccggacattggagtcaacaagattcactttgccct 643
Query: 415 tcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcat 474
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 642 tcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcat 583
Query: 475 acgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctg 534
| ||||| |||||||| | ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 582 atgggatgtcaatcttatgnccaaggatgagaaatgggacatttgccaaggaatcatcag 523
Query: 535 acaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatcta 594
| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||||| |
Sbjct: 522 aaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaa 463
Query: 595 ccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
||| | ||||||||||||||||| |||||||||| || ||||||||
Sbjct: 462 ccaaggatactacagcatcaacccttgcgtagtagtctttccagac 417
>gb|BJ467628.1|BJ467628 BJ467628 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b24 3', mRNA sequence
Length = 686
Score = 331 bits (167), Expect = 2e-089
Identities = 247/274 (90%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 370 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 429
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 430 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 489
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 490 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 549
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 550 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 609
Query: 533 tgacaggagagcgtccagctccttttttgattca 566
| |||||||| || ||||||||||| ||||||
Sbjct: 610 anaaaggagagcatcaagctcctttttcgattca 643
>gb|BG416499.1|BG416499 HVSMEk0012J14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012J14f, mRNA sequence
Length = 695
Score = 323 bits (163), Expect = 4e-087
Identities = 304/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Minus
Query: 295 cctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaa 354
|||||||||||||| | ||||||||||| || ||||| | |||| ||||||||| ||||
Sbjct: 548 cctacttgatgtat-gcgagacccactt-aacccatcacaatagctcatcttgcggacaa 491
Query: 355 cac-tgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
||| |||||||||| ||||||| |||||||||||| |||| |||| || || ||||||
Sbjct: 490 cacntgcacatgaacacctcaaaaggccggacattgaagtcaacaagattcacattgccc 431
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 430 ttcccagttgtgaagttgttaaggcctaggtgatatcgcagctcttcttcagaggctgca 371
Query: 474 tacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatct 533
|| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 370 tatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatca 311
Query: 534 gacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatct 593
|| |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||||
Sbjct: 310 gaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatca 251
Query: 594 accaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 250 accaagtatactacagcatcaacccttgcgtagtagtctttccagac 204
>gb|AJ463546.1|AJ463546 AJ463546 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087G05F1, mRNA sequence
Length = 420
Score = 321 bits (162), Expect = 2e-086
Identities = 237/262 (90%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 262 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 203
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 202 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 143
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 142 cttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 83
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 82 atatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatc 23
Query: 533 tgacaggagagcgtccagctcc 554
|| |||||||| || ||||||
Sbjct: 22 agaaaggagagcatcaagctcc 1
>gb|BM369508.2|BM369508 EBem07_SQ003_M17_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_M17 5', mRNA sequence
Length = 636
Score = 317 bits (160), Expect = 2e-085
Identities = 241/268 (89%)
Strand = Plus / Minus
Query: 373 caagtggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgc 432
|||| ||||||||||||||||| |||| || |||||||||||||| |||||||||||||
Sbjct: 636 caagaggccggacattggagtcaacaagattcaccttgcccttcccagttgtgaagttgc 577
Query: 433 taaggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgt 492
|||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| |
Sbjct: 576 taaggcctaggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttat 517
Query: 493 tgccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagct 552
||||||||||||||||||| |||||||||||||||||||| || |||||||| || ||||
Sbjct: 516 tgccaaggatgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagct 457
Query: 553 ccttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcat 612
||||||| ||||||| ||| ||||| || ||||| |||||||||| ||||||||||||||
Sbjct: 456 cctttttcgattcagtaaagcgctctttgtcatatgcatctaccaagtatactacagcat 397
Query: 613 caacctttgcgtagtaatccttccagac 640
||||| |||||||||| || ||||||||
Sbjct: 396 caacccttgcgtagtagtctttccagac 369
>gb|AL503495.1|AL503495 AL503495 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02F13T 5', mRNA sequence
Length = 700
Score = 283 bits (143), Expect = 3e-075
Identities = 248/281 (88%), Gaps = 2/281 (0%)
Strand = Plus / Minus
Query: 362 catgaaaacctcaagtggccgg-acattggagtcgccaaggttgaccttgcccttcccg- 419
|||||| |||||||| |||||| |||||| |||| |||| || ||| ||||||||||
Sbjct: 700 catgaacacctcaagaggccgggacattgnagtcaacaagattcaccntgcccttcccca 641
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct: 640 gttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgcatatggg 581
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 580 atgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatcagaaagg 521
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||||| |||| |
Sbjct: 520 agagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaaccaag 461
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagac 640
|||||||||||||||||| |||||||||| || ||||||||
Sbjct: 460 tatactacagcatcaacccttgcgtagtagtctttccagac 420
>gb|BU981802.1|BU981802 HA24K23r HA Hordeum vulgare subsp. vulgare cDNA clone HA24K23
5-PRIME, mRNA sequence
Length = 620
Score = 276 bits (139), Expect = 8e-073
Identities = 208/231 (90%)
Strand = Plus / Minus
Query: 410 gcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggc 469
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 620 gcccttcccagttgtgaagttgctaaggcctaggtgatatcgcagctcttcttcagaggc 561
Query: 470 agcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatc 529
||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 560 tgcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatc 501
Query: 530 atctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgc 589
||| || |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||
Sbjct: 500 atcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgc 441
Query: 590 atctaccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
||| |||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 440 atcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 390
>gb|BG344397.1|BG344397 HVSMEg0009C10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009C10f, mRNA sequence
Length = 824
Score = 272 bits (137), Expect = 1e-071
Identities = 299/347 (86%), Gaps = 5/347 (1%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaacc-atcgccgtagcccatcttgcgaacaaca 356
||||||||||||| ||||||| ||| ||||| ||| || |||||||||||| | ||| ||
Sbjct: 709 acttgatgtattgcgagacccccttaaaacccatcaccatagcccatcttggggacacca 650
Query: 357 ctgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgacc-ttgccctt 415
||||||||||| || ||||| |||||||||| | || |||| || ||| |||||| |
Sbjct: 649 ctgcacatgaacacttcaagaggccggacatggagntcaacaagattcacccttgcccct 590
Query: 416 cccg-gttgtgaagttgctaa-ggcctaggtgataccgcagctcctcttcagaggcagca 473
||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct: 589 ccccagttgtgaagt-gctaaaggcctaggtgatatcgcagctcctcttcagaggctgca 531
Query: 474 tacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatct 533
|| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 530 tatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcatca 471
Query: 534 gacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatct 593
|| |||||||| || ||||||||||| ||||||| | | ||||| || ||||| |||||
Sbjct: 470 gaaaggagagcatcaagctcctttttcgattcagtanagcgctctttgtcatatgcatca 411
Query: 594 accaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 410 accaagtatactacagcatcaacccttgcgtagtagtctttccagac 364
>gb|BU989147.1|BU989147 HF19P01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19P01
5-PRIME, mRNA sequence
Length = 467
Score = 260 bits (131), Expect = 5e-068
Identities = 198/219 (90%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 229 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 170
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 169 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 110
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 109 cttcccagttgt-aagttgctaaggcctaggtgatatcgcagctcttcttcagaggctgc 51
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatgg 511
||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 50 atatgggatgtcaatcttattgccaaggatgagaaatgg 12
>gb|AV915094.1|AV915094 AV915094 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n10 5', mRNA sequence
Length = 597
Score = 230 bits (116), Expect = 4e-059
Identities = 182/204 (89%)
Strand = Plus / Minus
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 597 gcctaggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttattgcc 538
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||||||||||||| |||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 537 aaggatgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctt 478
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
||| ||||||| ||| ||||| || ||||| ||||| |||| ||||||||||||||||||
Sbjct: 477 tttcgattcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaac 418
Query: 617 ctttgcgtagtaatccttccagac 640
| |||||||||| || ||||||||
Sbjct: 417 ccttgcgtagtagtctttccagac 394
>gb|AV915117.1|AV915117 AV915117 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9p06 5', mRNA sequence
Length = 597
Score = 226 bits (114), Expect = 7e-058
Identities = 180/202 (89%)
Strand = Plus / Minus
Query: 439 ctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaa 498
|||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 597 ctaggtgatatcgcagctcttcttcagaggctgcatatgggatgtcaatcttattgccaa 538
Query: 499 ggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctttt 558
||||||||||||| |||||||||||||||||||| || |||||||| || ||||||||||
Sbjct: 537 ggatgagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctttt 478
Query: 559 ttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacct 618
| ||||||| ||| ||||| || ||||| ||||| |||| |||||||||||||||||||
Sbjct: 477 tcgattcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaaccc 418
Query: 619 ttgcgtagtaatccttccagac 640
|||||||||| || ||||||||
Sbjct: 417 ttgcgtagtagtctttccagac 396
>gb|BE060748.3|BE060748 HVSMEg0013D16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013D16f, mRNA sequence
Length = 919
Score = 216 bits (109), Expect = 7e-055
Identities = 193/221 (87%)
Strand = Plus / Minus
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
||||| ||||| ||||||| ||||||||| | ||||| ||||||||||| ||||| |||
Sbjct: 600 gttgtaaagttcctaaggcataggtgatatccaagctcttcttcagaggctgcatagggg 541
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| |||||||| |||||||| ||||||||||| |||||||||||||||||||| || |||
Sbjct: 540 atgtcaatcttattgccaagcatgagaaatgggacatttgccaaggaatcatcagaaagg 481
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||||| |||| |
Sbjct: 480 agagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcatcaaccaag 421
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagac 640
|||||||||||||||||| |||||||||| || ||||||||
Sbjct: 420 tatactacagcatcaacccttgcgtagtagtctttccagac 380
>gb|BQ657113.1|BQ657113 HA09J24u HA Hordeum vulgare subsp. vulgare cDNA clone HA09J24
3-PRIME, mRNA sequence
Length = 567
Score = 202 bits (102), Expect = 1e-050
Identities = 147/162 (90%)
Strand = Plus / Plus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 406 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 465
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 466 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 525
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcag 454
|||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 526 cttcccagttgtgaagttgctaaggcctaggtgatatcgcag 567
>gb|BU969980.1|BU969980 HB13D16r BC Hordeum vulgare subsp. vulgare cDNA clone HB13D16
5-PRIME, mRNA sequence
Length = 304
Score = 192 bits (97), Expect = 1e-047
Identities = 149/165 (90%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 177 gccctacttgatgtactgcgagacccacttaaacccatcaccatagcccatcttgcggac 118
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 117 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 58
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctc 457
|||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 57 cttcccagttgt-aagttgctaaggcctaggtgatatcgcagctc 14
>gb|BU983729.1|BU983729 HA30N16r HA Hordeum vulgare subsp. vulgare cDNA clone HA30N16
5-PRIME, mRNA sequence
Length = 534
Score = 186 bits (94), Expect = 6e-046
Identities = 151/170 (88%)
Strand = Plus / Minus
Query: 471 gcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatca 530
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 534 gcatatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatca 475
Query: 531 tctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgca 590
|| || |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| |||
Sbjct: 474 tcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgca 415
Query: 591 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
|| |||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 414 tcaaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 365
>gb|BU986184.1|BU986184 HF09O20r HF Hordeum vulgare subsp. vulgare cDNA clone HF09O20
5-PRIME, mRNA sequence
Length = 533
Score = 184 bits (93), Expect = 2e-045
Identities = 150/169 (88%)
Strand = Plus / Minus
Query: 472 catacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcat 531
|||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 533 catatgggatgtcaatcttattgccaaggatgagaaatgggacatttgccaaggaatcat 474
Query: 532 ctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcat 591
| || |||||||| || ||||||||||| ||||||| ||| ||||| || ||||| ||||
Sbjct: 473 cagaaaggagagcatcaagctcctttttcgattcagtaaagcgctctttgtcatatgcat 414
Query: 592 ctaccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
| |||| ||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 413 caaccaagtatactacagcatcaacccttgcgtagtagtctttccagac 365
>gb|AJ436435.1|AJ436435 AJ436435 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200045G03F1, mRNA sequence
Length = 363
Score = 151 bits (76), Expect = 3e-035
Identities = 125/140 (89%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
||||||||||||||| || ||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 144 gccctacttgatgtagtgcgagacccacttaaacccatcaccatagcccatcttgcggac 85
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||
Sbjct: 84 aacactgcacatgaacacctcaagaggccggacattggagtcaacaagattcaccttgcc 25
Query: 413 ctt-cccggttgtgaagttg 431
||| ||| ||||||||||||
Sbjct: 24 cttacccagttgtgaagttg 5
>gb|CB882493.1|CB882493 HL02A08w HL Hordeum vulgare subsp. vulgare cDNA clone HL02A08
3-PRIME, mRNA sequence
Length = 558
Score = 147 bits (74), Expect = 5e-034
Identities = 122/138 (88%)
Strand = Plus / Minus
Query: 503 gagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttga 562
||||||||| |||||||||||||||||||| || |||||||| || ||||||||||| ||
Sbjct: 558 gagaaatgggacatttgccaaggaatcatcagaaaggagagcatcaagctcctttttcga 499
Query: 563 ttcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgc 622
||||| ||| ||||| || ||||| ||||| |||| ||||||||||||||||||| ||||
Sbjct: 498 ttcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgc 439
Query: 623 gtagtaatccttccagac 640
|||||| || ||||||||
Sbjct: 438 gtagtagtctttccagac 421
>gb|CK123982.1|CK123982 BES1824106f18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F186 5-PRIME, mRNA sequence
Length = 787
Score = 147 bits (74), Expect = 5e-034
Identities = 260/322 (80%)
Strand = Plus / Minus
Query: 316 cccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaa 375
|||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| |
Sbjct: 631 cccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctcca 572
Query: 376 gtggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaa 435
| || ||||||||||| |||| ||| | ||||||||||| || || |||||||||||||
Sbjct: 571 gggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaa 512
Query: 436 ggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgc 495
| || | ||| || || ||||| || || ||||||||||| ||||| || ||||||||||
Sbjct: 511 gacccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgc 452
Query: 496 caaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcct 555
| ||||| || || || || | |||| ||||| ||||| ||||| ||||| |||||||
Sbjct: 451 ccaggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcct 392
Query: 556 tttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaa 615
| || ||||| ||||| | ||| || ||||| || || || ||||| || || |||||||
Sbjct: 391 tcttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaa 332
Query: 616 cctttgcgtagtaatccttcca 637
|||| || ||||||||||||||
Sbjct: 331 ccttggcatagtaatccttcca 310
>gb|AL505462.1|AL505462 AL505462 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08I20V 5', mRNA sequence
Length = 700
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 671 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 612
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 611 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 552
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 551 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 492
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 491 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 432
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 431 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 372
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 371 cttggcatagtaatccttcca 351
>gb|BQ465083.1|BQ465083 HU02J14r HU Hordeum vulgare subsp. vulgare cDNA clone HU02J14
5-PRIME, mRNA sequence
Length = 651
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 644 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 585
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 584 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 525
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 524 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 465
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 464 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 405
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 404 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 345
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 344 cttggcatagtaatccttcca 324
>gb|BQ471183.1|BQ471183 HV01H06T HV Hordeum vulgare subsp. vulgare cDNA clone HV01H06
5-PRIME, mRNA sequence
Length = 700
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 677 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 618
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 617 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 558
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 557 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 498
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 497 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 438
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 437 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 378
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 377 cttggcatagtaatccttcca 357
>gb|CA015435.1|CA015435 HT14E23r HT Hordeum vulgare subsp. vulgare cDNA clone HT14E23
5-PRIME, mRNA sequence
Length = 650
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 588 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 529
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 528 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 469
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 468 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 409
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 408 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 349
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 348 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 289
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 288 cttggcatagtaatccttcca 268
>gb|BJ549410.1|BJ549410 BJ549410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33n23 5', mRNA sequence
Length = 608
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 593 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 534
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 533 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 474
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 473 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 414
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 413 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 354
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 353 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 294
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 293 cttggcatagtaatccttcca 273
>gb|BJ549610.1|BJ549610 BJ549610 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24c04 3', mRNA sequence
Length = 648
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 271 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 330
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 331 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 390
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 391 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 450
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 451 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 510
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 511 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 570
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 571 cttggcatagtaatccttcca 591
>gb|BJ549849.1|BJ549849 BJ549849 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33n23 3', mRNA sequence
Length = 695
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 214 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 273
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 274 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 333
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 334 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 393
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 394 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 453
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 454 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 513
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 514 cttggcatagtaatccttcca 534
>gb|CK123056.1|CK123056 BES1824101p18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P181 5-PRIME, mRNA sequence
Length = 783
Score = 145 bits (73), Expect = 2e-033
Identities = 259/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 630 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 571
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 570 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 511
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 510 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 451
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 450 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 391
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 390 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 331
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 330 cttggcatagtaatccttcca 310
>gb|CA032624.1|CA032624 HX13L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13L05
5-PRIME, mRNA sequence
Length = 557
Score = 141 bits (71), Expect = 3e-032
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 503 gagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttga 562
||||||||| |||| ||||||||||||||| || |||||||| || ||||||||||| ||
Sbjct: 557 gagaaatgggacatntgccaaggaatcatcagaaaggagagcatcaagctcctttttcga 498
Query: 563 ttcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgc 622
||||| ||| ||||| || ||||| ||||| |||| ||||||||||||||||||| ||||
Sbjct: 497 ttcagtaaagcgctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgc 438
Query: 623 gtagtaatccttccagac 640
|||||| || ||||||||
Sbjct: 437 gtagtagtctttccagac 420
>gb|CV062611.1|CV062611 BNEL81a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL81a1 5' similar to GTP-binding
protein, mRNA sequence
Length = 537
Score = 139 bits (70), Expect = 1e-031
Identities = 244/302 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 303 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 244
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||||| ||||||||||| || || ||||||||||||||
Sbjct: 243 ggggcggacattggactcgctgaggttcaccttgcccttgccagtcgtgaagttgctaag 184
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| ||||||||||||||
Sbjct: 183 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcaatcttgttgcc 124
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 123 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 64
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 63 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 4
Query: 617 ct 618
||
Sbjct: 3 ct 2
>gb|BQ664053.1|BQ664053 HV01H06w HV Hordeum vulgare subsp. vulgare cDNA clone HV01H06
3-PRIME, mRNA sequence
Length = 650
Score = 137 bits (69), Expect = 5e-031
Identities = 258/321 (80%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 298 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 357
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || |||||||||||||
Sbjct: 358 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaaa 417
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 418 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 477
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 478 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 537
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 538 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 597
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 598 cttggcatagtaatccttcca 618
>gb|CA025362.1|CA025362 HZ51P06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51P06
5-PRIME, mRNA sequence
Length = 659
Score = 135 bits (68), Expect = 2e-030
Identities = 248/308 (80%)
Strand = Plus / Minus
Query: 330 tcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacattg 389
||||| || ||||||||||| || | ||||||||||| ||||| || || |||||||||
Sbjct: 656 tcgccatatcccatcttgcggacgatgctgcacatgaagacctccagggggcggacattg 597
Query: 390 gagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgatac 449
|| |||| ||| | ||||||||||| || || |||||||||||||| || | ||| ||
Sbjct: 596 gactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaagacccaagtggtag 537
Query: 450 cgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgagaaat 509
|| ||||| || || ||||||||||| ||||| || ||||||||||| ||||| || ||
Sbjct: 536 cggagctcttcctctgaggcagcataggggatgtcgatcttgttgcccaggatcaggaag 477
Query: 510 ggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagca 569
|| || | |||| ||||| ||||| ||||| ||||| |||||||| || ||||| |||
Sbjct: 476 gggacggtggccagcgaatcgtctgagaggagggcgtcgagctccttcttggattcggca 417
Query: 570 aatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaa 629
|| | ||| || ||||| || || || ||||| || || ||||||||||| || ||||||
Sbjct: 416 aacctctctttgtcataggcgtccacgaggtacaccactgcatcaaccttggcatagtaa 357
Query: 630 tccttcca 637
||||||||
Sbjct: 356 tccttcca 349
>gb|BU980268.1|BU980268 HA20C21r HA Hordeum vulgare subsp. vulgare cDNA clone HA20C21
5-PRIME, mRNA sequence
Length = 531
Score = 133 bits (67), Expect = 8e-030
Identities = 112/127 (88%)
Strand = Plus / Minus
Query: 514 catttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaatc 573
||||||||||||||||||| || |||||||| || ||||||||||| ||||||| ||| |
Sbjct: 531 catttgccaaggaatcatcagaaaggagagcatcaagctcctttttcgattcagtaaagc 472
Query: 574 gctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatcct 633
|||| || ||||| ||||| |||| ||||||||||||||||||| |||||||||| || |
Sbjct: 471 gctctttgtcatatgcatcaaccaagtatactacagcatcaacccttgcgtagtagtctt 412
Query: 634 tccagac 640
|||||||
Sbjct: 411 tccagac 405
>gb|BG343229.2|BG343229 HVSMEg0005C16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005C16f, mRNA sequence
Length = 993
Score = 129 bits (65), Expect = 1e-028
Identities = 257/321 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| || | ||
Sbjct: 634 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagactcccag 575
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 574 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 515
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 514 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 455
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 454 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 395
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 394 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 335
Query: 617 ctttgcgtagtaatccttcca 637
||| || ||||||||||||||
Sbjct: 334 cttggcatagtaatccttcca 314
>gb|BU976147.1|BU976147 HA03D15r HA Hordeum vulgare subsp. vulgare cDNA clone HA03D15
5-PRIME, mRNA sequence
Length = 617
Score = 129 bits (65), Expect = 1e-028
Identities = 227/281 (80%)
Strand = Plus / Minus
Query: 357 ctgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttc 416
||||||||||| ||||| || || ||||||||||| |||| ||| | |||||||||||
Sbjct: 608 ctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgcccttg 549
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| || |||||||||||||| || | ||| || || ||||| || || |||||||||||
Sbjct: 548 ccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcatag 489
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| || ||||||||||| ||||| || || || || | |||| ||||| |||||
Sbjct: 488 gggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgag 429
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
||||| ||||| |||||||| || ||||| ||||| | ||| || ||||| || || ||
Sbjct: 428 aggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacg 369
Query: 597 aggtatactacagcatcaacctttgcgtagtaatccttcca 637
||||| || || ||||||||||| || ||||||||||||||
Sbjct: 368 aggtacaccactgcatcaaccttggcatagtaatccttcca 328
>gb|BU987698.1|BU987698 HF15I04r HF Hordeum vulgare subsp. vulgare cDNA clone HF15I04
5-PRIME, mRNA sequence
Length = 550
Score = 129 bits (65), Expect = 1e-028
Identities = 227/281 (80%)
Strand = Plus / Minus
Query: 357 ctgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttc 416
||||||||||| ||||| || || ||||||||||| |||| ||| | |||||||||||
Sbjct: 541 ctgcacatgaagacctccagggggcggacattggactcgctgaggctcaccttgcccttg 482
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| || |||||||||||||| || | ||| || || ||||| || || |||||||||||
Sbjct: 481 ccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctctgaggcagcatag 422
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| || ||||||||||| ||||| || || || || | |||| ||||| |||||
Sbjct: 421 gggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagcgaatcgtctgag 362
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
||||| ||||| |||||||| || ||||| ||||| | ||| || ||||| || || ||
Sbjct: 361 aggagggcgtcgagctccttcttggattcggcaaacctctctttgtcataggcgtccacg 302
Query: 597 aggtatactacagcatcaacctttgcgtagtaatccttcca 637
||||| || || ||||||||||| || ||||||||||||||
Sbjct: 301 aggtacaccactgcatcaaccttggcatagtaatccttcca 261
>gb|CA015415.1|CA015415 HT14D20r HT Hordeum vulgare subsp. vulgare cDNA clone HT14D20
5-PRIME, mRNA sequence
Length = 503
Score = 125 bits (63), Expect = 2e-027
Identities = 243/303 (80%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 198 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 257
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 258 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 317
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 318 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 377
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 378 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 437
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|| ||||| ||||| | ||| || ||||| || || || ||||| || || ||||||||
Sbjct: 438 cttggattcggcaaacctctctttgtcataggcgtccacgaggtacaccactgcatcaac 497
Query: 617 ctt 619
|||
Sbjct: 498 ctt 500
>gb|BQ460449.1|BQ460449 HA09J24r HA Hordeum vulgare subsp. vulgare cDNA clone HA09J24
5-PRIME, mRNA sequence
Length = 537
Score = 123 bits (62), Expect = 8e-027
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 519 gccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaatcgctcc 578
|||||||||||||| || |||||||| || ||||||||||| ||||||| ||| |||||
Sbjct: 537 gccaaggaatcatcagaaaggagagcatcaagctcctttttcgattcagtaaagcgctct 478
Query: 579 ttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccag 638
|| ||||| ||||| |||| ||||||||||||||||||| |||||||||| || ||||||
Sbjct: 477 ttgtcatatgcatcaaccaagtatactacagcatcaacccttgcgtagtagtctttccag 418
Query: 639 ac 640
||
Sbjct: 417 ac 416
>gb|AL502727.1|AL502727 AL502727 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08I20u 3', mRNA sequence
Length = 640
Score = 117 bits (59), Expect = 5e-025
Identities = 206/255 (80%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 253 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 312
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 313 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 372
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 373 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 432
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 433 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 492
Query: 557 ttttgattcagcaaa 571
|| ||||| |||||
Sbjct: 493 cttggattcggcaaa 507
>gb|BM376084.2|BM376084 EBma01_SQ002_E21_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_E21 5', mRNA sequence
Length = 444
Score = 117 bits (59), Expect = 5e-025
Identities = 206/255 (80%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 282 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 223
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 222 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 163
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 162 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 103
Query: 497 aaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctt 556
||||| || || || || | |||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 102 caggatcaggaaggggacggtggccagcgaatcgtctgagaggagggcgtcgagctcctt 43
Query: 557 ttttgattcagcaaa 571
|| ||||| |||||
Sbjct: 42 cttggattcggcaaa 28
>gb|AJ435114.1|AJ435114 AJ435114 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050B08F1, mRNA sequence
Length = 527
Score = 107 bits (54), Expect = 4e-022
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 238 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 179
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 178 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 119
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 118 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 59
Query: 497 aaggat 502
|||||
Sbjct: 58 caggat 53
>gb|BQ663963.1|BQ663963 HU04M21u HU Hordeum vulgare subsp. vulgare cDNA clone HU04M21
3-PRIME, mRNA sequence
Length = 490
Score = 107 bits (54), Expect = 4e-022
Identities = 153/186 (82%)
Strand = Plus / Plus
Query: 317 ccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaag 376
||||||||| || ||||| || ||||||||||| || | ||||||||||| ||||| ||
Sbjct: 298 ccacttgaacccttcgccatatcccatcttgcggacgatgctgcacatgaagacctccag 357
Query: 377 tggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaag 436
|| ||||||||||| |||| ||| | ||||||||||| || || ||||||||||||||
Sbjct: 358 ggggcggacattggactcgctgaggctcaccttgcccttgccagtcgtgaagttgctaag 417
Query: 437 gcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgcc 496
|| | ||| || || ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct: 418 acccaagtggtagcggagctcttcctctgaggcagcataggggatgtcgatcttgttgcc 477
Query: 497 aaggat 502
|||||
Sbjct: 478 caggat 483
>gb|BQ465827.1|BQ465827 HU04M21r HU Hordeum vulgare subsp. vulgare cDNA clone HU04M21
5-PRIME, mRNA sequence
Length = 558
Score = 105 bits (53), Expect = 2e-021
Identities = 188/233 (80%)
Strand = Plus / Minus
Query: 405 accttgcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttca 464
||||||||||| || || |||||||||||||| || | ||| || || ||||| || ||
Sbjct: 552 accttgcccttgccagtcgtgaagttgctaagacccaagtggtagcggagctcttcctct 493
Query: 465 gaggcagcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaag 524
||||||||||| ||||| || ||||||||||| ||||| || || || || | ||||
Sbjct: 492 gaggcagcataggggatgtcgatcttgttgcccaggatcaggaaggggacggtggccagc 433
Query: 525 gaatcatctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatca 584
||||| ||||| ||||| ||||| |||||||| || ||||| ||||| | ||| || |||
Sbjct: 432 gaatcgtctgagaggagggcgtcgagctccttcttggattcggcaaacctctctttgtca 373
Query: 585 tacgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 372 taggcgtccacgaggtacaccactgcatcaaccttggcatagtaatccttcca 320
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,843
Number of Sequences: 312970
Number of extensions: 55843
Number of successful extensions: 14956
Number of sequences better than 0.5: 98
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14733
Number of HSP's gapped (non-prelim): 175
length of query: 643
length of database: 175,134,539
effective HSP length: 19
effective length of query: 624
effective length of database: 169,188,109
effective search space: 105573380016
effective search space used: 105573380016
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)