BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no... 52 2e-005
gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedl... 42 0.022
gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DA... 42 0.022
gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachi... 42 0.022
gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA li... 42 0.022
gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA li... 42 0.022
gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA li... 42 0.022
gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA li... 42 0.022
gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. v... 42 0.022
gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, ... 42 0.022
gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. v... 42 0.022
gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no... 40 0.088
>gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B16 5', mRNA sequence
Length = 646
Score = 52.0 bits (26), Expect = 2e-005
Identities = 146/186 (78%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | ||||||||||| || || | || |||
Sbjct: 430 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggtcgactacctcgaccggaga 489
Query: 69 cccggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactgg 128
||||| || || ||||| || |||||| | ||||| || |||| | || || ||||||
Sbjct: 490 cccggggactacgccgaagtgtacagcaacccgtccaagatccgcgacgagctgaactgg 549
Query: 129 acagcccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcg 188
|||||||| |||| || || || | |||||||| ||| |||||||||||||| |||
Sbjct: 550 acagcccaacacacggacctccgcgagagcctcgcgacggcctggaaatggcagaaggcg 609
Query: 189 cacccg 194
||||||
Sbjct: 610 cacccg 615
>gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008E12f, mRNA sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 260 gaactaaactggacagcccagcacaccga 288
>gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019L05f, mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 485 gaactaaactggacagcccagcacaccga 513
>gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005D24f, mRNA sequence
Length = 1150
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 400 gaactaaactggacagcccagcacaccga 428
>gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2a02 3', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 211 gaactaaactggacagcccagcacaccga 183
>gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2b02 3', mRNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 141 gaactaaactggacagcccagcacaccga 113
>gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i15 3', mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 210 gaactaaactggacagcccagcacaccga 182
>gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 3', mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 213 gaactaaactggacagcccagcacaccga 185
>gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. vulgare cDNA clone HX04E07
3-PRIME, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 221 gaactaaactggacagcccagcacaccga 193
>gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_O16 5', mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 287 gaactaaactggacagcccagcacaccga 315
>gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42A04
5-PRIME, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 117 gaactcaactggacagcccagtacaccga 145
||||| ||||||||||||||| |||||||
Sbjct: 313 gaactaaactggacagcccagcacaccga 341
>gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A16 5', mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.088
Identities = 101/128 (78%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| ||||||||||| || ||||| | ||||||||||| || || | || |||
Sbjct: 430 gtagaagcgtgcaagaaggcgaccggagcgaccatcaaggtcgactacctcgaccggaga 489
Query: 69 cccggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactgg 128
||||| || || ||||| || |||||| | ||||| || |||| | || || ||||||
Sbjct: 490 cccggggactacgccgaagtgtacagcaacccgtccaagatccgcgacgagctgaactgg 549
Query: 129 acagccca 136
||||||||
Sbjct: 550 acagccca 557
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,455
Number of Sequences: 312970
Number of extensions: 43455
Number of successful extensions: 10367
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10342
Number of HSP's gapped (non-prelim): 23
length of query: 646
length of database: 175,134,539
effective HSP length: 19
effective length of query: 627
effective length of database: 169,188,109
effective search space: 106080944343
effective search space used: 106080944343
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)