BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440568.2.1
(1135 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF254175.2|BF254175 HVSMEf0003D17f Hordeum vulgare seedl... 737 0.0
gb|BQ765999.1|BQ765999 EBro03_SQ008_C19_R root, 3 week, wat... 525 e-147
gb|BU974897.1|BU974897 HB29H02r BC Hordeum vulgare subsp. v... 505 e-142
gb|AV930770.1|AV930770 AV930770 K. Sato unpublished cDNA li... 500 e-140
gb|CA025499.1|CA025499 HZ52F11r HZ Hordeum vulgare subsp. v... 472 e-131
gb|BF254320.2|BF254320 HVSMEf0003K06f Hordeum vulgare seedl... 470 e-131
gb|BQ765118.1|BQ765118 EBca01_SQ005_H24_R carpel, pre-anthe... 357 5e-097
gb|CB876216.1|CB876216 HX10K03w HX Hordeum vulgare subsp. v... 349 1e-094
gb|BU975651.1|BU975651 HB31N14r BC Hordeum vulgare subsp. v... 347 5e-094
gb|BF258404.2|BF258404 HVSMEf0015K04f Hordeum vulgare seedl... 329 1e-088
gb|CA023265.1|CA023265 HZ45L11r HZ Hordeum vulgare subsp. v... 313 7e-084
gb|CA012727.1|CA012727 HT06E07r HT Hordeum vulgare subsp. v... 244 5e-063
gb|BU997444.1|BU997444 HI08A05r HI Hordeum vulgare subsp. v... 234 5e-060
gb|BQ660662.1|BQ660662 HI04M18u HI Hordeum vulgare subsp. v... 212 2e-053
gb|BG367013.1|BG367013 HVSMEi0009N02f Hordeum vulgare 20 DA... 198 3e-049
gb|CA022231.1|CA022231 HZ42I12r HZ Hordeum vulgare subsp. v... 188 3e-046
gb|BF630079.2|BF630079 HVSMEb0007N24f Hordeum vulgare seedl... 176 1e-042
gb|AL504813.1|AL504813 AL504813 Hordeum vulgare Barke roots... 167 1e-039
gb|BQ463215.1|BQ463215 HI04M18r HI Hordeum vulgare subsp. v... 153 2e-035
gb|BM442915.2|BM442915 EBro02_SQ001_N08_R root, 3 week, hyd... 121 5e-026
gb|BJ452111.1|BJ452111 BJ452111 K. Sato unpublished cDNA li... 109 2e-022
gb|BM443229.2|BM443229 EBro02_SQ003_D17_R root, 3 week, hyd... 109 2e-022
gb|AV836865.1|AV836865 AV836865 K. Sato unpublished cDNA li... 107 8e-022
gb|BQ756154.1|BQ756154 EBem05_SQ001_P09_R embryo, 14 DPA, n... 94 1e-017
gb|CA011334.1|CA011334 HT06E07u HT Hordeum vulgare subsp. v... 92 5e-017
gb|BM442760.2|BM442760 EBro02_SQ001_C02_R root, 3 week, hyd... 90 2e-016
gb|AL501318.1|AL501318 AL501318 Hordeum vulgare Barke roots... 86 3e-015
gb|AL502121.1|AL502121 AL502121 Hordeum vulgare Barke roots... 84 1e-014
gb|AL502902.1|AL502902 AL502902 Hordeum vulgare Barke roots... 80 2e-013
gb|BJ459667.1|BJ459667 BJ459667 K. Sato unpublished cDNA li... 80 2e-013
gb|AL504838.1|AL504838 AL504838 Hordeum vulgare Barke roots... 78 7e-013
gb|AV837061.1|AV837061 AV837061 K. Sato unpublished cDNA li... 76 3e-012
gb|BU970511.1|BU970511 HB14N18r BC Hordeum vulgare subsp. v... 76 3e-012
gb|BJ468677.1|BJ468677 BJ468677 K. Sato unpublished cDNA li... 62 4e-008
gb|AV833420.1|AV833420 AV833420 K. Sato unpublished cDNA li... 60 2e-007
gb|BJ462781.1|BJ462781 BJ462781 K. Sato unpublished cDNA li... 60 2e-007
gb|BI953631.1|BI953631 HVSMEm0013K08f Hordeum vulgare green... 56 3e-006
gb|BI953661.1|BI953661 HVSMEm0013M10f Hordeum vulgare green... 48 6e-004
gb|CB858691.1|CB858691 HI08A05w HI Hordeum vulgare subsp. v... 44 0.010
gb|BQ762892.1|BQ762892 EBro02_SQ006_N12_R root, 3 week, hyd... 40 0.16
>gb|BF254175.2|BF254175 HVSMEf0003D17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003D17f, mRNA sequence
Length = 786
Score = 737 bits (372), Expect = 0.0
Identities = 668/764 (87%), Gaps = 2/764 (0%)
Strand = Plus / Minus
Query: 264 ttcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcg 323
||||||| |||||| ||||||||||| | ||||||||||| | ||||||||| || |||
Sbjct: 784 ttcagcaagggttgaagcgccttgacgccgatgctcatgtttgcccggaagtcagcctcg 725
Query: 324 tattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatagtcc 383
|||||||| ||||| || || ||||| |||| || |||||||| |||||||||||||||
Sbjct: 724 tattgaacgcacaatgccgcaacagctgcaacttttgcaacagccttaggaggatagtcc 665
Query: 384 cctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||| || |||||||| ||||| || |||||||| || |||
Sbjct: 664 cctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttggggtggcc 605
Query: 444 caggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtc 503
|| || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 604 catgtgacaaggctctgctgccccctcggtaatgtatggtcgacaggtttcctcccagtc 545
Query: 504 aacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgccca 563
|| ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 544 aatagctccagaagaacaactccaaaactgtacacatcactcttagagctaagttgacca 485
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 484 gtcattgcatactcaggtgcatggtatccaaatgttcccagaaccctagttgagtgaagc 425
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| ||||||||||||||||||||||| |||| ||| |||||||| || |||||||||||
Sbjct: 424 cgggctgccatgtcaggagcttggtttgacaaatcgaagtcagctattttagctacatct 365
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
||||| || ||||| || ||||| ||||||||||| | |||||||| || ||||| |||
Sbjct: 364 tcatcaaagagaagaacattgctggacttgatgtccctgtgtatgacgtgaggctgtgct 305
Query: 744 ttctcatgaagatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgac 803
||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct: 304 ttctcatgaagatactctaggcctttcgctgcaccaacagctatcttcacccgttgtatc 245
Query: 804 cacgataagactggaccgggttgagcccctttaacccctttccttccatgaagcatatca 863
|| |||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 catgataagaccggacctggctgagcccctttaacacctttccttccatgaagcatatca 185
Query: 864 tgaagggaacccattgtagcgaactcataagcaaggacgcggagtg-tcccatcagcaca 922
||||| || ||||| || || ||||||||||| ||||| ||| ||| | |||||| |||
Sbjct: 184 tgaagagagcccatagtggcaaactcataagctaggacacgg-gtgttgccatcaagaca 126
Query: 923 gtaaccaagcaactcgacaacattttcatgcttcagccttgacaccatagacacctgggc 982
||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 125 gtaaccaagtaactcaacaacattttcatgcttaagccttgacaccatagatacctgtgc 66
Query: 983 caagaactcttggtctggctgcttgttagaatccaactttttga 1026
|| || ||||||||||||||||| | ||||||| ||||||||
Sbjct: 65 cagcaattcttggtctggctgcttactggaatccagctttttga 22
>gb|BQ765999.1|BQ765999 EBro03_SQ008_C19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_C19 5', mRNA sequence
Length = 535
Score = 525 bits (265), Expect = e-147
Identities = 466/529 (88%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 429 agtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgaca 488
|||||||| || ||||| || ||||| |||||||| ||||| || |||||||||||||||
Sbjct: 531 agtcttggggtggcccatgtgacaaggctctgctgccccctcggtaatgtatggtcgaca 472
Query: 489 ggtttcctcccagtcaacagctcaagaagaacaac-cccaaaactatatacatcactctt 547
||||||||||||||||| ||||| ||||||||||| ||||||||| || |||||||||||
Sbjct: 471 ggtttcctcccagtcaatagctccagaagaacaactcccaaaactgtacacatcactctt 412
Query: 548 agagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaatgttccgagaac 607
|||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 411 agagctaagttgaccagtcattgcatactcaggtgcatggtatccaaatgttcccagaac 352
Query: 608 cctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaagtcagc 667
|||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||
Sbjct: 351 cctagttgagtgaagccgggctgccatgtcaggagcttggtttgacaaatcgaagtcagc 292
Query: 668 gatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtgtat 727
|| ||||||||||| ||||| || ||||| || ||||| ||||||||||| | ||||||
Sbjct: 291 tattttagctacatcttcatcaaagagaagaacattgctggacttgatgtccctgtgtat 232
Query: 728 gatatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctat 787
|| || ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 231 gacgtgaggctgtgctttctcatgaagatactctaggcctttcgctgcaccaacagctat 172
Query: 788 cttcacacgttgcgaccacgataagactggaccgggttgagcccctttaacccctttcct 847
|||||| ||||| ||| |||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 171 cttcacccgttgtatccatgataagaccggacctggctgagcccctttaacacctttcct 112
Query: 848 tccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggag 907
||||||||||||||||||||| || ||||| || || ||||||||||| ||||| ||| |
Sbjct: 111 tccatgaagcatatcatgaagagagcccatagtggcaaactcataagctaggacacgg-g 53
Query: 908 tg-tcccatcagcacagtaaccaagcaactcgacaacattttcatgctt 955
|| | |||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 52 tgttgccatcaagacagtaaccaagtaactcaacaacattttcatgctt 4
>gb|BU974897.1|BU974897 HB29H02r BC Hordeum vulgare subsp. vulgare cDNA clone HB29H02
5-PRIME, mRNA sequence
Length = 515
Score = 505 bits (255), Expect = e-142
Identities = 417/471 (88%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 487 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 428
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 427 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 368
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 367 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 308
Query: 439 tagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcc 498
| ||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 307 tggcccatgtgacaaggctctgctgccccctcggtaatgtatggtcgacaggtttcctcc 248
Query: 499 cagtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagtt 558
||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct: 247 cagtcaatagctccagaagaacaactccaaaactgtacacatcactcttagagctaagtt 188
Query: 559 gcccagtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagt 618
| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 187 gaccagtcattgcatactcaggtgcatggtatccaaatgttcccagaaccctagttgagt 128
Query: 619 gaagccgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagcta 678
||||||| ||||||||||||||||||||||| |||| ||| |||||||| || |||||||
Sbjct: 127 gaagccgggctgccatgtcaggagcttggtttgacaaatcgaagtcagctattttagcta 68
Query: 679 catcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatga 729
|||| ||||| || ||||| || ||||| ||||||||||| | ||||||||
Sbjct: 67 catcttcatcaaagagaagaacattgctggacttgatgtccctgtgtatga 17
>gb|AV930770.1|AV930770 AV930770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c22 3', mRNA sequence
Length = 669
Score = 500 bits (252), Expect = e-140
Identities = 408/460 (88%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 188 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 247
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 248 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 307
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 308 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 367
Query: 439 tagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcc 498
| ||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 368 tggcccatgtgacaaggctctgctgccccctcggtaatgtatggtcgacaggtttcctcc 427
Query: 499 cagtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagtt 558
||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct: 428 cagtcaatagctccagaagaacaactccaaaactgtacacatcactcttagagctaagtt 487
Query: 559 gcccagtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagt 618
| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 488 gaccagtcattgcatactcaggtgcatggtatccaaatgttcccagaaccctagttgagt 547
Query: 619 gaagccgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagcta 678
||||||| ||||||||||||||||||||||| |||| ||| |||||||| || |||||||
Sbjct: 548 gaagccgggctgccatgtcaggagcttggtttgacaaatcgaagtcagctattttagcta 607
Query: 679 catcgtcatcgaaaagaaggacgttgctagacttgatgtc 718
|||| ||||| || ||||| || ||||| |||||||||||
Sbjct: 608 catcttcatcaaagagaagaacattgctggacttgatgtc 647
>gb|CA025499.1|CA025499 HZ52F11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52F11
5-PRIME, mRNA sequence
Length = 559
Score = 472 bits (238), Expect = e-131
Identities = 444/510 (87%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 605 aaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaagtc 664
||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||
Sbjct: 559 aaccctagttgagtgaagccgggctgccatgtcaggagcttggtttgacaaatcgaagtc 500
Query: 665 agcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtg 724
||| || ||||||||||| ||||| || ||||| || ||||| ||||||||||| | |||
Sbjct: 499 agctattttagctacatcttcatcaaagagaagaacattgctggacttgatgtccctgtg 440
Query: 725 tatgatatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgc 784
||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 439 tatgacgtgaggctgtgctttctcatgaagatactctaggcctttcgctgcaccaacagc 380
Query: 785 tatcttcacacgttgcgaccacgataagactggaccgggttgagcccctttaaccccttt 844
||||||||| ||||| ||| |||||||| ||||| || |||||||||||||| |||||
Sbjct: 379 tatcttcacccgttgtatccatgataagaccggacctggctgagcccctttaacaccttt 320
Query: 845 ccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcg 904
|||||||||||||||||||||||| || ||||| || || ||||||||||| ||||| ||
Sbjct: 319 ccttccatgaagcatatcatgaagagagcccatagtggcaaactcataagctaggacacg 260
Query: 905 gagtg-tcccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttg 963
| ||| | |||||| |||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 259 g-gtgttgccatcaagacagtaaccaagtaactcaacaacattttcatgcttaagccttg 201
Query: 964 acaccatagacacctgggccaagaactcttggtctggctgcttgttagaatccaactttt 1023
|||||||||| ||||| |||| || ||||||||||||||||| | ||||||| |||||
Sbjct: 200 acaccatagatacctgtgccagcaattcttggtctggctgcttactggaatccagctttt 141
Query: 1024 tgaccgcggcactcctaccatttcttagaacacccaagtatactctgccaaaggatccct 1083
||| || |||| || |||||||||||| ||| || |||||||| |||||||| ||||
Sbjct: 140 tgattgctgcacctctgccatttcttagagtaccaaaatatactctaccaaaggaaccct 81
Query: 1084 caccaatcaaagcttcatcaccaaaaccct 1113
||||||||||||||||||||||||||||||
Sbjct: 80 caccaatcaaagcttcatcaccaaaaccct 51
>gb|BF254320.2|BF254320 HVSMEf0003K06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003K06f, mRNA sequence
Length = 835
Score = 470 bits (237), Expect = e-131
Identities = 489/569 (85%), Gaps = 3/569 (0%)
Strand = Plus / Minus
Query: 537 acatcactcttagagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaat 596
|||||||||||| | || |||||||||||||||||||| ||||| |||||| |||| |||
Sbjct: 568 acatcactcttacacctcagttgcccagtcatcgcatattcaggtgcatggcatcccaat 509
Query: 597 gttccgagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacaga 656
||||| | |||||||||||||| |||||| |||||||||||||||| |||||| | || |
Sbjct: 508 gttcccacaaccctagttgagtcaagccgggctgccatgtcaggagtttggtttgtcaaa 449
Query: 657 tcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatg 716
|| |||||||| || ||||||||||| ||||| || ||||| || ||||| |||||||||
Sbjct: 448 tcgaagtcagctattttagctacatcttcatcaaagagaagaacattgctggacttgatg 389
Query: 717 tctcggtgtatgatatggggctgcgctttctcatgaagatactcgaggcctttcgctgcc 776
|| | |||||||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 388 tccctgtgtatgacgtgaggctgtgctttctcatgaagatactctaggcctttcgctgca 329
Query: 777 ccaaccgctatcttcacacgttgcgaccacgataagactggaccgggttgagccccttta 836
||||| ||||||||||| ||||| ||| |||||||| ||||| || ||||||||||||
Sbjct: 328 ccaacagctatcttcacccgttgtatccatgataagaccggacctggctgagccccttta 269
Query: 837 acccctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagca 896
|| ||||||||||||||||||||||||||||| || ||||| || || |||||||||||
Sbjct: 268 acacctttccttccatgaagcatatcatgaagagagcccatagtggcaaactcataagct 209
Query: 897 aggacgcggagtg-tcccatcagcacagtaaccaagcaactcgacaacattttcatgctt 955
||||| ||| ||| | |||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 208 aggacacgg-gtgttgccatcaagacagtaaccaagtaactcaacaacattttcatgctt 150
Query: 956 cagccttgacaccatagacacctgggccaagaactcttggtctggctgcttgttagaatc 1015
||||||||||||||||| ||||| |||| || ||||||||||||||||| | |||||
Sbjct: 149 aagccttgacaccatagatacctgtgccagcaattcttggtctggctgcttactggaatc 90
Query: 1016 caactttttgaccgcggcactcctaccatttcttagaacacccaagtatactctgccaaa 1075
|| |||||||| || |||| || |||||||||||| ||| || |||||||| |||||
Sbjct: 89 cagctttttgattgctgcacctctgccatttcttagagtaccaaaatatactctaccaaa 30
Query: 1076 ggatccctcaccaatc-aaagcttcatca 1103
||| |||||||||||| | ||||||||||
Sbjct: 29 ggaaccctcaccaatcgagagcttcatca 1
>gb|BQ765118.1|BQ765118 EBca01_SQ005_H24_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H24 5', mRNA sequence
Length = 759
Score = 357 bits (180), Expect = 5e-097
Identities = 363/422 (86%), Gaps = 2/422 (0%)
Strand = Plus / Minus
Query: 693 agaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatga 752
||||| || ||||| ||||||||||| | |||||||| || ||||| ||||||||||||
Sbjct: 753 agaagaacattgctggacttgatgtccctgtgtatgacgtgaggctgtgctttctcatga 694
Query: 753 agatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgaccacgataag 812
||||||| |||||||||||||| ||||| ||||||||||| ||||| ||| ||||||
Sbjct: 693 agatactntaggcctttcgctgcaccaacagctatcttcacccgttgtatccatgataag 634
Query: 813 actggaccgggttgagcccctttaacccctttccttccatgaagcatatcatgaagggaa 872
|| |||| || |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 633 accggacntggctgagcccctttaacacctttccttccatgaagcatatcatgaagagag 574
Query: 873 cccattgtagcgaactcataagcaaggacgcggagtgtc-ccatcagcacagtaaccaag 931
||||| || || ||||||||||| ||||| ||| |||| |||||| ||||||||||||
Sbjct: 573 cccatagtggcaaactcataagctaggacacgg-gtgttgccatcaagacagtaaccaag 515
Query: 932 caactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaactc 991
||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| || ||
Sbjct: 514 taactcaacaacattttcatgcttaagccttgacaccatagatacctgtgccagcaattc 455
Query: 992 ttggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttcttag 1051
||||||||||||||| | ||||||| |||||||| || |||| || |||||||||||
Sbjct: 454 ttggtctggctgcttactggaatccagctttttgattgctgcacctctgccatttcttag 395
Query: 1052 aacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaacc 1111
| ||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 394 agtaccaaaatatactctaccaaaggaaccctcaccaatcaaagcttcatcaccaaaacc 335
Query: 1112 ct 1113
||
Sbjct: 334 ct 333
>gb|CB876216.1|CB876216 HX10K03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K03
3-PRIME, mRNA sequence
Length = 551
Score = 349 bits (176), Expect = 1e-094
Identities = 300/340 (88%), Gaps = 1/340 (0%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 213 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 272
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 273 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 332
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 333 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 392
Query: 439 tagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcc 498
| ||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 393 tggcccatgtgacaaggctctgctgccccctcggtaatgtatggtcgacaggtttcctcc 452
Query: 499 cagtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagtt 558
||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||
Sbjct: 453 cagtcaatagctccagaagaac-actccaaaactgtacacatcactcttagagctaagtt 511
Query: 559 gcccagtcatcgcatactcaggcgcatggtatccgaatgt 598
| |||||||| ||||||||||| ||||||||||| |||||
Sbjct: 512 gaccagtcattgcatactcaggtgcatggtatccaaatgt 551
>gb|BU975651.1|BU975651 HB31N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N14
5-PRIME, mRNA sequence
Length = 337
Score = 347 bits (175), Expect = 5e-094
Identities = 283/319 (88%)
Strand = Plus / Minus
Query: 411 ctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtcccctt 470
|||||||| ||||| || |||||||| || ||||| || ||||| |||||||| |||||
Sbjct: 335 ctaaccttatcttcactcagtcttggggtggcccatgtgacaaggctctgctgccccctc 276
Query: 471 ggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaa 530
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 275 ggtaatgtatggtcgacaggtttcctcccagtcaatagctccagaagaacaactccaaaa 216
Query: 531 ctatatacatcactcttagagctgagttgcccagtcatcgcatactcaggcgcatggtat 590
|| || ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 215 ctgtacacatcactcttagagctaagttgaccagtcattgcatactcaggtgcatggtat 156
Query: 591 ccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttc 650
|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 155 ccaaatgttcccagaaccctagttgagtgaagccgggctgccatgtcaggagcttggttt 96
Query: 651 gacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagac 710
|||| ||| |||||||| || ||||||||||| ||||| || ||||| || ||||| |||
Sbjct: 95 gacaaatcgaagtcagctattttagctacatcttcatcaaagagaagaacattgctggac 36
Query: 711 ttgatgtctcggtgtatga 729
|||||||| | ||||||||
Sbjct: 35 ttgatgtccctgtgtatga 17
>gb|BF258404.2|BF258404 HVSMEf0015K04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0015K04f, mRNA sequence
Length = 588
Score = 329 bits (166), Expect = 1e-088
Identities = 324/374 (86%), Gaps = 2/374 (0%)
Strand = Plus / Minus
Query: 741 gctttctcatgaagatactcgaggcctttcgctgccccaaccgctatcttcacacgttgc 800
||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 425 gctttttcatgaagatactctaggcctttcgctgcaccaacagctattttcacccgttgt 366
Query: 801 gaccacgataagactggaccgggttgagcccctttaacccctttccttccatgaagcata 860
||| |||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 365 atccatgataagaccggacctggtggagcccctttaacacctttccttccatgaagcata 306
Query: 861 tcatgaagggaacccattgtagcgaactcataagcaaggacgcggagtgtc-ccatcagc 919
|||||||| || ||||| || || ||||||||||| ||||| ||| |||| ||||||
Sbjct: 305 tcatgaagagagcccatagtggcaaactcataagctaggacacgg-gtgttgccatcaag 247
Query: 920 acagtaaccaagcaactcgacaacattttcatgcttcagccttgacaccatagacacctg 979
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 246 acagtaaccaagtaactcaacaacattttcatgcttaagccttgacaccatagatacctg 187
Query: 980 ggccaagaactcttggtctggctgcttgttagaatccaactttttgaccgcggcactcct 1039
|||| || ||||||||||||||||| | ||||||| |||||||| || |||| ||
Sbjct: 186 tgccagcaattcttggtctggctgcttactggaatccagctttttgattgctgcacctct 127
Query: 1040 accatttcttagaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttc 1099
|||||||||||| ||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct: 126 gccatttcttagagtaccaaaatatactctaccaaaggaaccctcaccaatcaaagcttc 67
Query: 1100 atcaccaaaaccct 1113
||||||||||||||
Sbjct: 66 atcaccaaaaccct 53
>gb|CA023265.1|CA023265 HZ45L11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45L11
5-PRIME, mRNA sequence
Length = 566
Score = 313 bits (158), Expect = 7e-084
Identities = 260/294 (88%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 294 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 235
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 234 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 175
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 174 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 115
Query: 439 tagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcc 498
| ||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 114 tggcccatgtgacaaggctctgctgccccctcggtaatgtatggtcgacaggtttcctcc 55
Query: 499 cagtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagc 552
||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct: 54 cagtcaatagctccagaagaacaactccaaaactgtacacatcactcttagagc 1
>gb|CA012727.1|CA012727 HT06E07r HT Hordeum vulgare subsp. vulgare cDNA clone HT06E07
5-PRIME, mRNA sequence
Length = 484
Score = 244 bits (123), Expect = 5e-063
Identities = 239/275 (86%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaagg 899
||||||||||||||||||||||||||||| || ||||| || || ||||||||||| |||
Sbjct: 483 cctttccttccatgaagcatatcatgaagagagcccatagtggcaaactcataagctagg 424
Query: 900 acgcggagtgtc-ccatcagcacagtaaccaagcaactcgacaacattttcatgcttcag 958
|| ||| |||| |||||| |||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 423 acacgg-gtgttgccatcaagacagtaaccaagtaactcaacaacattttcatgcttaag 365
Query: 959 ccttgacaccatagacacctgggccaagaactcttggtctggctgcttgttagaatccaa 1018
||||||||||||||| ||||| |||| || ||||||||||||||||| | |||||||
Sbjct: 364 ccttgacaccatagatacctgtgccagcaattcttggtctggctgcttactggaatccag 305
Query: 1019 ctttttgaccgcggcactcctaccatttcttagaacacccaagtatactctgccaaagga 1078
|||||||| || |||| || |||||||||||| ||| || |||||||| ||||||||
Sbjct: 304 ctttttgattgctgcacctctgccatttcttagagtaccaaaatatactctaccaaagga 245
Query: 1079 tccctcaccaatcaaagcttcatcaccaaaaccct 1113
||||||||||||||||||||||||||||||||||
Sbjct: 244 accctcaccaatcaaagcttcatcaccaaaaccct 210
>gb|BU997444.1|BU997444 HI08A05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08A05
5-PRIME, mRNA sequence
Length = 615
Score = 234 bits (118), Expect = 5e-060
Identities = 175/194 (90%)
Strand = Plus / Minus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttg 419
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 198 gcaacagccttaggaggatagtcccctccaagtcttgagtcaacacattgcctaacctta 139
Query: 420 tcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgta 479
||||| || |||||||| || ||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 138 tcttcactcagtcttggggtggcccatgtgacaaggctctgctgccccctcggtaatgta 79
Query: 480 tggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatataca 539
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 78 tggtcgacaggtttcctcccagtcaatagctccagaagaacaactccaaaactgtacaca 19
Query: 540 tcactcttagagct 553
||||||||||||||
Sbjct: 18 tcactcttagagct 5
Score = 85.7 bits (43), Expect = 3e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 611 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 552
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaact 357
|||||||||| || ||||| || || ||||| |||||||
Sbjct: 551 cttcgtattggacgcacaatgccgcaacagctgcaaact 513
>gb|BQ660662.1|BQ660662 HI04M18u HI Hordeum vulgare subsp. vulgare cDNA clone HI04M18
3-PRIME, mRNA sequence
Length = 406
Score = 212 bits (107), Expect = 2e-053
Identities = 185/211 (87%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 188 gcgcgttcagcaagggctggagcgccttgacgacaatgctcatgtttggccggaagtcag 247
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 248 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 307
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 308 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 367
Query: 439 tagcccaggtcacaagactctgctgtcccct 469
| ||||| || ||||| |||||||| |||||
Sbjct: 368 tggcccatgtgacaaggctctgctgccccct 398
>gb|BG367013.1|BG367013 HVSMEi0009N02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009N02f, mRNA sequence
Length = 770
Score = 198 bits (100), Expect = 3e-049
Identities = 244/288 (84%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 827 agcccctttaacccctttccttccatgaagcatatcatgaagggaacccattgtagcgaa 886
|||||||| ||| |||||||||| | |||||||||||||||| || || || | || ||
Sbjct: 622 agccccttaaacacctttccttcaaggaagcatatcatgaagagagccaatagg-gcaaa 564
Query: 887 ctcataagcaaggacgcggagtgtc-ccatcagcacagtaaccaagcaactcgacaacat 945
||| |||| ||||| ||| |||| |||||| |||||||||||| ||||| |||||||
Sbjct: 563 atcacaagctaggacacgg-gtgttgccatcaagacagtaaccaagtaactcaacaacat 505
Query: 946 tttcatgcttcagccttgacaccatagacacctgggccaagaactcttggtctggctgct 1005
|||||||||| ||||||||||||||||| ||||| |||| || ||||||||||||||||
Sbjct: 504 tttcatgcttaagccttgacaccatagatacctgtgccagcaattcttggtctggctgct 445
Query: 1006 tgttagaatccaactttttgaccgcggcactcctaccatttcttagaacacccaagtata 1065
| | ||||||| |||||||| || |||| || |||||||||||| ||| || ||||
Sbjct: 444 tactggaatccagctttttgattgctgcacctctgccatttcttagagtaccaaaatata 385
Query: 1066 ctctgccaaaggatccctcaccaatcaaagcttcatcaccaaaaccct 1113
|||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctaccaaaggaaccctcaccaatcaaagcttcatcaccaaaaccct 337
>gb|CA022231.1|CA022231 HZ42I12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I12
5-PRIME, mRNA sequence
Length = 566
Score = 188 bits (95), Expect = 3e-046
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 192 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 133
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 132 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 73
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| || |||||||| ||||| || |||||||| |
Sbjct: 72 agtcccctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttgggg 13
Query: 439 tagccca 445
| |||||
Sbjct: 12 tggccca 6
>gb|BF630079.2|BF630079 HVSMEb0007N24f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007N24f, mRNA sequence
Length = 498
Score = 176 bits (89), Expect = 1e-042
Identities = 158/181 (87%)
Strand = Plus / Minus
Query: 933 aactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaactct 992
||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| || |||
Sbjct: 494 aactcaacaacattttcatgcttaagccttgacaccatagatacctgtgccagcaattct 435
Query: 993 tggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttcttaga 1052
|||||||||||||| | ||||||| |||||||| || |||| || ||||||||||||
Sbjct: 434 tggtctggctgcttactggaatccagctttttgattgctgcacctctgccatttcttaga 375
Query: 1053 acacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaaccc 1112
||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 374 gtaccaaaatatactctaccaaaggaaccctcaccaatcaaagcttcatcaccaaaaccc 315
Query: 1113 t 1113
|
Sbjct: 314 t 314
>gb|AL504813.1|AL504813 AL504813 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06H18V 5', mRNA sequence
Length = 382
Score = 167 bits (84), Expect = 1e-039
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 181 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 122
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
|||||||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||
Sbjct: 121 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggaggat 62
Query: 379 agtcccctccaagtcttgagtcaacaca 406
||||||||||||||||||||||||||||
Sbjct: 61 agtcccctccaagtcttgagtcaacaca 34
>gb|BQ463215.1|BQ463215 HI04M18r HI Hordeum vulgare subsp. vulgare cDNA clone HI04M18
5-PRIME, mRNA sequence
Length = 514
Score = 153 bits (77), Expect = 2e-035
Identities = 143/165 (86%)
Strand = Plus / Minus
Query: 949 catgcttcagccttgacaccatagacacctgggccaagaactcttggtctggctgcttgt 1008
||||||| ||||||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 514 catgcttaagccttgacaccatagatacctgtgccagcaattcttggtctggctgcttac 455
Query: 1009 tagaatccaactttttgaccgcggcactcctaccatttcttagaacacccaagtatactc 1068
| ||||||| |||||||| || |||| || |||||||||||| ||| || |||||||
Sbjct: 454 tggaatccagctttttgattgctgcacctctgccatttcttagagtaccaaaatatactc 395
Query: 1069 tgccaaaggatccctcaccaatcaaagcttcatcaccaaaaccct 1113
| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 394 taccaaaggaaccctcaccaatcaaagcttcatcaccaaaaccct 350
>gb|BM442915.2|BM442915 EBro02_SQ001_N08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_N08 5', mRNA sequence
Length = 490
Score = 121 bits (61), Expect = 5e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 969 atagacacctgggccaagaactcttggtctggctgcttgttagaatccaactttttgacc 1028
||||| ||||| |||| || ||||||||||||||||| | ||||||| ||||||||
Sbjct: 490 atagatacctgtgccagcaattcttggtctggctgcttactggaatccagctttttgatt 431
Query: 1029 gcggcactcctaccatttcttagaacacccaagtatactctgccaaaggatccctcacca 1088
|| |||| || |||||||||||| ||| || |||||||| |||||||| |||||||||
Sbjct: 430 gctgcacctctgccatttcttagagtaccaaaatatactctaccaaaggaaccctcacca 371
Query: 1089 atcaaagcttcatcaccaaaaccct 1113
|||||||||||||||||||||||||
Sbjct: 370 atcaaagcttcatcaccaaaaccct 346
>gb|BJ452111.1|BJ452111 BJ452111 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37m24 5', mRNA sequence
Length = 689
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| |||||||| |||||||||
Sbjct: 437 tcaacacattgttttaccttgtcctcaccaagccttggtgttgcccaggtaacaagactc 378
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
|||||||||||||||| || || || || |||||||| ||||| | ||||| | ||||
Sbjct: 377 tgctgtccccttggcatcgtgtgatctactggtttccttccagttaggagctctaaaaga 318
Query: 519 acaaccccaaaactatatacatcactcttagagctgagttgcccagtcatcgcatactca 578
||||||||||| ||||| |||||||| || | ||||| |||||||| ||||||||
Sbjct: 317 acaaccccaaagctatacacatcacttttttgcgtcagttggccagtcatggcatactcg 258
Query: 579 ggcgcatggtatccgaatgttcc 601
|| ||||| ||||| || |||||
Sbjct: 257 ggagcatgatatccaaaggttcc 235
>gb|BM443229.2|BM443229 EBro02_SQ003_D17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_D17 5', mRNA sequence
Length = 424
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 119 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 60
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggagga 377
|||||||||| || ||||| || || ||||| |||||||| |||||||| |||||||||
Sbjct: 59 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaacagccttaggagga 1
>gb|AV836865.1|AV836865 AV836865 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basdk23, mRNA sequence
Length = 750
Score = 107 bits (54), Expect = 8e-022
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| |||||||| |||||||||
Sbjct: 433 tcaacacattgttttaccttgtcctcaccaagccttggtgttgcccaggtaacaagactc 492
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
|||||||||||||||| || || || || |||||||| ||||| | ||||| | ||||
Sbjct: 493 tgctgtccccttggcatcgtgtgatctactggtttccttccagttaggagctctaaaaga 552
Query: 519 acaaccccaaaactatatacatcact 544
||||||||||| ||||| ||||||||
Sbjct: 553 acaaccccaaagctatacacatcact 578
>gb|BQ756154.1|BQ756154 EBem05_SQ001_P09_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_P09 5', mRNA sequence
Length = 308
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 1041 ccatttcttagaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttca 1100
|||||||||||| ||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 282 ccatttcttagagtaccaaaatatactctaccaaaggaaccctcaccaatcaaagcttca 223
Query: 1101 tcaccaaaacc 1111
|||||||||||
Sbjct: 222 tcaccaaaacc 212
>gb|CA011334.1|CA011334 HT06E07u HT Hordeum vulgare subsp. vulgare cDNA clone HT06E07
3-PRIME, mRNA sequence
Length = 467
Score = 91.7 bits (46), Expect = 5e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 362 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 421
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaac 364
|||||||||| || ||||| || || ||||| |||||||| |||||
Sbjct: 422 cttcgtattggacgcacaatgccgcaacagctgcaaactttgcaac 467
>gb|BM442760.2|BM442760 EBro02_SQ001_C02_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_C02 5', mRNA sequence
Length = 352
Score = 89.7 bits (45), Expect = 2e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1043 atttcttagaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatc 1102
|||||||||| ||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 352 atttcttagagtaccaaaatatactctaccaaaggaaccctcaccaatcaaagcttcatc 293
Query: 1103 accaaaacc 1111
|||||||||
Sbjct: 292 accaaaacc 284
>gb|AL501318.1|AL501318 AL501318 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03M17u 3', mRNA sequence
Length = 691
Score = 85.7 bits (43), Expect = 3e-015
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 221 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 280
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaact 357
|||||||||| || ||||| || || ||||| |||||||
Sbjct: 281 cttcgtattggacgcacaatgccgcaacagctgcaaact 319
>gb|AL502121.1|AL502121 AL502121 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06I22u 3', mRNA sequence
Length = 355
Score = 83.8 bits (42), Expect = 1e-014
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 257 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 316
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaac 356
|||||||||| || ||||| || || ||||| ||||||
Sbjct: 317 cttcgtattggacgcacaatgccgcaacagctgcaaac 354
>gb|AL502902.1|AL502902 AL502902 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09B14u 3', mRNA sequence
Length = 499
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| |||||||| |||||||||
Sbjct: 347 tcaacacattgttttaccttgtcctcaccaagccttggtgttgcccaggtaacaagactc 406
Query: 459 tgctgtccccttggca 474
||||||||||||||||
Sbjct: 407 tgctgtccccttggca 422
>gb|BJ459667.1|BJ459667 BJ459667 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37m24 3', mRNA sequence
Length = 485
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| |||||||| |||||||||
Sbjct: 391 tcaacacattgttttaccttgtcctcaccaagccttggtgttgcccaggtaacaagactc 450
Query: 459 tgctgtccccttggca 474
||||||||||||||||
Sbjct: 451 tgctgtccccttggca 466
>gb|AL504838.1|AL504838 AL504838 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06I22V 5', mRNA sequence
Length = 351
Score = 77.8 bits (39), Expect = 7e-013
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 95 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 36
Query: 319 cttcgtattgaacacacaa 337
|||||||||| || |||||
Sbjct: 35 cttcgtattggacgcacaa 17
>gb|AV837061.1|AV837061 AV837061 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd18l23, mRNA
sequence
Length = 670
Score = 75.8 bits (38), Expect = 3e-012
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 282 gccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcg 341
|||||||| || ||||||||||| |||||||||||||| ||||| || || |||| ||
Sbjct: 321 gccttgacgacgatgctcatgtttggccggaagtccgcctcgtactgcacgcacagagca 380
Query: 342 gcgacagccgcaaacttcgcaacagctttaggaggatagtcccctccaagtcttgagtca 401
|| || || || | ||| || | ||| || ||||| || ||| | ||||| ||| ||
Sbjct: 381 gccacggcagccatcttggcgatagcctttggagggtaatccacaccaagctttggatct 440
Query: 402 acacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgc 461
|||||||| || ||||||||||| || || |||||||||||||| |||||||| ||||||
Sbjct: 441 acacactgcctcaccttgtcttcacttagccttggtgtagcccatgtcacaaggctctgc 500
Query: 462 tg 463
||
Sbjct: 501 tg 502
>gb|BU970511.1|BU970511 HB14N18r BC Hordeum vulgare subsp. vulgare cDNA clone HB14N18
5-PRIME, mRNA sequence
Length = 291
Score = 75.8 bits (38), Expect = 3e-012
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||| ||||||| ||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 89 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtttggccggaagtcag 30
Query: 319 cttcgtattg 328
||||||||||
Sbjct: 29 cttcgtattg 20
>gb|BJ468677.1|BJ468677 BJ468677 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39m17 3', mRNA sequence
Length = 746
Score = 61.9 bits (31), Expect = 4e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 414 accttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggc 473
|||||||||||| | | ||||||||||||||| || || || |||||||| || | |||
Sbjct: 452 accttgtcttcggttaatcttggtgtagcccatgtaaccaggctctgctgccctcggggc 511
Query: 474 aatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaacta 533
||||||||| ||||| || || || |||| || || | ||||||||||||||||||
Sbjct: 512 gctgtatggtccacaggctttcttcctgtcagaagttccaagagaacaaccccaaaacta 571
Query: 534 tatacatcact 544
|| ||||||||
Sbjct: 572 tacacatcact 582
>gb|AV833420.1|AV833420 AV833420 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8g23, mRNA sequence
Length = 540
Score = 60.0 bits (30), Expect = 2e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 414 accttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggc 473
||||| ||||| || | |||||| |||||||| || || ||||| || ||||||| |||
Sbjct: 500 accttatcttcactcaatcttggagtagcccaagtgactagactttgttgtccccgaggc 441
Query: 474 aatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaacta 533
| ||| || ||||| |||||||| ||||||| || ||||||||||| || ||||| ||
Sbjct: 440 attgtgtgatcgaccggtttccttccagtcagaagttcaagaagaaccacgccaaagctg 381
Query: 534 tatacatcactctt 547
|| || ||||||||
Sbjct: 380 tagacgtcactctt 367
>gb|BJ462781.1|BJ462781 BJ462781 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24f14 5', mRNA sequence
Length = 617
Score = 60.0 bits (30), Expect = 2e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 414 accttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggc 473
||||| ||||| || | |||||| |||||||| || || ||||| || ||||||| |||
Sbjct: 519 accttatcttcactcaatcttggagtagcccaagtgactagactttgttgtccccgaggc 460
Query: 474 aatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaacta 533
| ||| || ||||| |||||||| ||||||| || ||||||||||| || ||||| ||
Sbjct: 459 attgtgtgatcgaccggtttccttccagtcagaagttcaagaagaaccacgccaaagctg 400
Query: 534 tatacatcactctt 547
|| || ||||||||
Sbjct: 399 tagacgtcactctt 386
>gb|BI953631.1|BI953631 HVSMEm0013K08f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013K08f, mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 453 agactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctca 512
||||||||||| || || |||| |||||| || || |||||||| || || | |||||
Sbjct: 448 agactctgctggcctctaggcattgtatgatctactggtttccttcctgttagaagctct 389
Query: 513 agaagaacaaccccaaaactatatacatcact 544
| ||||||||| ||||| ||||||||||||||
Sbjct: 388 aaaagaacaactccaaagctatatacatcact 357
>gb|BI953661.1|BI953661 HVSMEm0013M10f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013M10f, mRNA sequence
Length = 854
Score = 48.1 bits (24), Expect = 6e-004
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 453 agactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctca 512
||||||||||| || || |||| |||||| || || |||||| | || || | |||||
Sbjct: 452 agactctgctggcctctaggcattgtatgatctactggtttcattcctgttagaagctct 393
Query: 513 agaagaacaaccccaaaactatatacatcact 544
| ||||||||| ||||| ||||||||||||||
Sbjct: 392 aaaagaacaactccaaagctatatacatcact 361
>gb|CB858691.1|CB858691 HI08A05w HI Hordeum vulgare subsp. vulgare cDNA clone HI08A05
3-PRIME, mRNA sequence
Length = 250
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgtt 304
|||| ||||||| ||| || ||||||||||| || |||||||||||
Sbjct: 202 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatgtt 247
>gb|BQ762892.1|BQ762892 EBro02_SQ006_N12_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_N12 5', mRNA sequence
Length = 322
Score = 40.1 bits (20), Expect = 0.16
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatg 302
|||| ||||||| ||| || ||||||||||| || |||||||||
Sbjct: 44 gcgcgttcagcaagggctggagcgccttgacgacgatgctcatg 1
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,051
Number of Sequences: 312970
Number of extensions: 95051
Number of successful extensions: 26200
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26095
Number of HSP's gapped (non-prelim): 95
length of query: 1135
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1116
effective length of database: 169,188,109
effective search space: 188813929644
effective search space used: 188813929644
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)