BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ460471.1|BQ460471 HA09H11r HA Hordeum vulgare subsp. v... 337 2e-091
gb|BQ657146.1|BQ657146 HA09H11u HA Hordeum vulgare subsp. v... 337 2e-091
gb|BM100425.1|BM100425 EBma01_SQ005_C23_R maternal, 4 DPA, ... 283 3e-075
gb|BU971682.1|BU971682 HB19F13r BC Hordeum vulgare subsp. v... 262 1e-068
gb|AL511138.1|AL511138 AL511138 Hordeum vulgare Barke devel... 256 7e-067
gb|BQ661003.1|BQ661003 HM01H14w HM Hordeum vulgare subsp. v... 216 6e-055
gb|BQ661228.1|BQ661228 HM02I18u HM Hordeum vulgare subsp. v... 216 6e-055
gb|AL512219.1|AL512219 AL512219 Hordeum vulgare Barke devel... 196 5e-049
gb|BI776777.2|BI776777 EBpi07_SQ001_L15_R pistil, 12 DPA, n... 184 2e-045
gb|BU988389.1|BU988389 HF17H23r HF Hordeum vulgare subsp. v... 167 5e-040
gb|BQ760249.1|BQ760249 EBpi07_SQ003_M14_R pistil, 12 DPA, n... 155 2e-036
gb|BF628954.2|BF628954 HVSMEb0009F03f Hordeum vulgare seedl... 145 2e-033
gb|BQ468512.1|BQ468512 HM01H14T HM Hordeum vulgare subsp. v... 123 6e-027
gb|BI960413.1|BI960413 HVSMEn0024I08f Hordeum vulgare rachi... 117 4e-025
gb|BQ468849.1|BQ468849 HM02I18r HM Hordeum vulgare subsp. v... 117 4e-025
gb|BU982554.1|BU982554 HA26O10r HA Hordeum vulgare subsp. v... 115 2e-024
gb|AL511547.1|AL511547 AL511547 Hordeum vulgare Barke devel... 111 2e-023
gb|AV925753.1|AV925753 AV925753 K. Sato unpublished cDNA li... 111 2e-023
gb|AV930889.1|AV930889 AV930889 K. Sato unpublished cDNA li... 111 2e-023
gb|BU972244.1|BU972244 HB21B09r BC Hordeum vulgare subsp. v... 111 2e-023
gb|BU972337.1|BU972337 HB21F19r BC Hordeum vulgare subsp. v... 111 2e-023
gb|BM372495.2|BM372495 EBpi05_SQ003_C02_R pistil, 8 DPA, no... 109 9e-023
gb|BM372498.2|BM372498 EBpi05_SQ003_C05_R pistil, 8 DPA, no... 109 9e-023
gb|BM372479.2|BM372479 EBpi05_SQ003_B09_R pistil, 8 DPA, no... 109 9e-023
gb|BM372501.2|BM372501 EBpi05_SQ003_C08_R pistil, 8 DPA, no... 109 9e-023
gb|BI953145.1|BI953145 HVSMEm0011E01f Hordeum vulgare green... 74 5e-012
gb|CA021686.1|CA021686 HZ40M22r HZ Hordeum vulgare subsp. v... 64 5e-009
gb|CA022183.1|CA022183 HZ42G07r HZ Hordeum vulgare subsp. v... 64 5e-009
gb|BI956257.1|BI956257 HVSMEn0001K14f Hordeum vulgare rachi... 58 3e-007
gb|BI957789.1|BI957789 HVSMEn0011F10f Hordeum vulgare rachi... 58 3e-007
gb|BG418646.2|BG418646 HVSMEk0023K20f Hordeum vulgare testa... 58 3e-007
gb|BQ471891.1|BQ471891 HV03M17r HV Hordeum vulgare subsp. v... 58 3e-007
gb|BE214238.1|BE214238 HV_CEb0002M24f Hordeum vulgare seedl... 38 0.29
gb|BF065327.1|BF065327 HV_CEb0012C04f Hordeum vulgare seedl... 38 0.29
gb|BF264226.2|BF264226 HV_CEa0008N18f Hordeum vulgare seedl... 38 0.29
gb|BF265677.2|BF265677 HV_CEa0013A18f Hordeum vulgare seedl... 38 0.29
gb|BF064882.3|BF064882 HV_CEb0021F24f Hordeum vulgare seedl... 38 0.29
gb|BI778802.2|BI778802 EBro01_SQ001_J02_R root, 3 week, hyd... 38 0.29
gb|BI779123.2|BI779123 EBro01_SQ003_B06_R root, 3 week, hyd... 38 0.29
gb|BI779297.2|BI779297 EBro01_SQ003_J13_R root, 3 week, hyd... 38 0.29
gb|BM097374.2|BM097374 EBro01_SQ004_P06_R root, 3 week, hyd... 38 0.29
gb|BM369999.2|BM369999 EBro08_SQ002_K02_R root, 3 week, dro... 38 0.29
gb|BQ762728.1|BQ762728 EBro02_SQ004_K21_R root, 3 week, hyd... 38 0.29
gb|BQ762738.1|BQ762738 EBro02_SQ004_M21_R root, 3 week, hyd... 38 0.29
gb|BQ765288.1|BQ765288 EBro03_SQ006_B23_R root, 3 week, wat... 38 0.29
>gb|BQ460471.1|BQ460471 HA09H11r HA Hordeum vulgare subsp. vulgare cDNA clone HA09H11
5-PRIME, mRNA sequence
Length = 576
Score = 337 bits (170), Expect = 2e-091
Identities = 297/337 (88%), Gaps = 8/337 (2%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 202 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 261
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 262 ggtgcgggtgcagaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 321
Query: 305 ctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccagag 364
||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 322 gtggccgaacgcgacgga------cgggcggcccgccagccagctgatcgggttccagag 375
Query: 365 cctgcacctgagggc-gacgcagacggcgcacgtggagttcgaggtgagcccctgcaagc 423
| |||||||| |||| |||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 376 cgtgcacctgcgggcggacg-aggccgcgcacgtggagttcgaggtgagcccctgcaagc 434
Query: 424 acttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtga 483
|||| ||||||||| ||||||| ||| | ||||||||||| ||||||||||||||||| |
Sbjct: 435 acttgagccgggcggcggaggacggccgcaaggtgatcgaccagggctcgcacttcgtca 494
Query: 484 tggtcggcgaggatgagttcgagatgagcttcatggc 520
||||||||| || ||||||||| |||||||||||||
Sbjct: 495 gggtcggcgacgacgagttcgagttgagcttcatggc 531
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 6 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 65
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 120
>gb|BQ657146.1|BQ657146 HA09H11u HA Hordeum vulgare subsp. vulgare cDNA clone HA09H11
3-PRIME, mRNA sequence
Length = 521
Score = 337 bits (170), Expect = 2e-091
Identities = 297/337 (88%), Gaps = 8/337 (2%)
Strand = Plus / Minus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 467 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 408
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 407 ggtgcgggtgcagaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 348
Query: 305 ctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccagag 364
||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 347 gtggccgaacgcgacgga------cgggcggcccgccagccagctgatcgggttccagag 294
Query: 365 cctgcacctgagggc-gacgcagacggcgcacgtggagttcgaggtgagcccctgcaagc 423
| |||||||| |||| |||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 293 cgtgcacctgcgggcggacg-aggccgcgcacgtggagttcgaggtgagcccctgcaagc 235
Query: 424 acttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtga 483
|||| ||||||||| ||||||| ||| | ||||||||||| ||||||||||||||||| |
Sbjct: 234 acttgagccgggcggcggaggacggccgcaaggtgatcgaccagggctcgcacttcgtca 175
Query: 484 tggtcggcgaggatgagttcgagatgagcttcatggc 520
||||||||| || ||||||||| |||||||||||||
Sbjct: 174 gggtcggcgacgacgagttcgagttgagcttcatggc 138
>gb|BM100425.1|BM100425 EBma01_SQ005_C23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_C23 5', mRNA sequence
Length = 426
Score = 283 bits (143), Expect = 3e-075
Identities = 246/278 (88%), Gaps = 8/278 (2%)
Strand = Plus / Plus
Query: 244 tggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgc 303
|||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| |||
Sbjct: 1 tggtgcgggtgcagaaccacgggcccatggacggcaggcacccggtgctgctgttcctgc 60
Query: 304 gctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccaga 363
| ||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct: 61 ggtggccgaacgcgacgga------cgggcggcccgccagccagctgatcgggttccaga 114
Query: 364 gcctgcacctgagggc-gacgcagacggcgcacgtggagttcgaggtgagcccctgcaag 422
|| |||||||| |||| |||| || | |||||||||||||||||||||||||||||||||
Sbjct: 115 gcgtgcacctgcgggcggacg-aggccgcgcacgtggagttcgaggtgagcccctgcaag 173
Query: 423 cacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtg 482
||||| ||||||||| ||||||| ||| | ||||||||||| |||||||||||||||||
Sbjct: 174 cacttgagccgggcggcggaggacggccgcaaggtgatcgaccagggctcgcacttcgtc 233
Query: 483 atggtcggcgaggatgagttcgagatgagcttcatggc 520
| ||||||||| || ||||||||| |||||||||||||
Sbjct: 234 agggtcggcgacgacgagttcgagttgagcttcatggc 271
>gb|BU971682.1|BU971682 HB19F13r BC Hordeum vulgare subsp. vulgare cDNA clone HB19F13
5-PRIME, mRNA sequence
Length = 410
Score = 262 bits (132), Expect = 1e-068
Identities = 241/275 (87%), Gaps = 8/275 (2%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 143 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 202
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 203 ggtgcgggtgcagaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 262
Query: 305 ctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccagag 364
||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 263 gtggccgaacgcgacgga------cgggcggcccgccagccagctgatcgggttccagag 316
Query: 365 cctgcacctgagggc-gacgcagacggcgcacgtggagttcgaggtgagcccctgcaagc 423
| |||||||| |||| |||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 317 cgtgcacctgcgggcggacg-aggccgcgcacgtggagttcgaggtgagcccctgcaagc 375
Query: 424 acttcagccgggcgacggaggatggcaggaaggtg 458
|||| ||||||||| ||||||| ||| | ||||||
Sbjct: 376 acttgagccgggcggcggaggacggccgcaaggtg 410
Score = 87.7 bits (44), Expect = 3e-016
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 68 caacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 caacttcggctacggcctgagctactccaagtactcccaccgcttcgc 61
>gb|AL511138.1|AL511138 AL511138 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07B24u 3',
mRNA sequence
Length = 440
Score = 256 bits (129), Expect = 7e-067
Identities = 232/264 (87%), Gaps = 8/264 (3%)
Strand = Plus / Minus
Query: 258 aaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcccaacgcg 317
|||||||||||||||||||| | |||| |||||||| ||||| |||| ||||| ||||||
Sbjct: 440 aaccacgggcccatggacggcaggcacccggtgctgctgttcctgcggtggccgaacgcg 381
Query: 318 acggacggcagcggccggccggccagccagctgatcgggttccagagcctgcacctgagg 377
||||| ||| ||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct: 380 acgga------cgggcggcccgccagccagctgatcgggttccagagcgtgcacctgcgg 327
Query: 378 gc-gacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccgggc 436
|| |||| || | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 gcggacg-aggccgcgcacgtggagttcgaggtgagcccctgcaagcacttgagccgggc 268
Query: 437 gacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgagga 496
| ||||||| ||| | ||||||||||| ||||||||||||||||| | ||||||||| ||
Sbjct: 267 ggcggaggacggccgcaaggtgatcgaccagggctcgcacttcgtcagggtcggcgacga 208
Query: 497 tgagttcgagatgagcttcatggc 520
||||||||| |||||||||||||
Sbjct: 207 cgagttcgagttgagcttcatggc 184
>gb|BQ661003.1|BQ661003 HM01H14w HM Hordeum vulgare subsp. vulgare cDNA clone HM01H14
3-PRIME, mRNA sequence
Length = 368
Score = 216 bits (109), Expect = 6e-055
Identities = 171/189 (90%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 333 cggccggccagccagctgatcgggttccagagcctgcacctgagggcg-acgcagacggc 391
||||| ||||||||||||||||||||||||||| |||||||| ||||| ||| || | ||
Sbjct: 340 cggcccgccagccagctgatcgggttccagagcgtgcacctgcgggcggacg-aggccgc 282
Query: 392 gcacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcag 451
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct: 281 gcacgtggagttcgaggtgagcccctgcaagcacttgagccgggcggcggaggacggccg 222
Query: 452 gaaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgag 511
||||||||||| ||||||||||||||||| | ||||||||| || ||||||||| ||||
Sbjct: 221 caaggtgatcgaccagggctcgcacttcgtcagggtcggcgacgacgagttcgagttgag 162
Query: 512 cttcatggc 520
|||||||||
Sbjct: 161 cttcatggc 153
>gb|BQ661228.1|BQ661228 HM02I18u HM Hordeum vulgare subsp. vulgare cDNA clone HM02I18
3-PRIME, mRNA sequence
Length = 385
Score = 216 bits (109), Expect = 6e-055
Identities = 207/240 (86%), Gaps = 6/240 (2%)
Strand = Plus / Minus
Query: 281 gcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggccggccggc 340
|||| |||||||| ||||| |||| ||||| ||| |||||||||| ||||| ||
Sbjct: 383 gcacccggtgctgctgttcctgcggtggccgaacacgacggacggg------cggcccgc 330
Query: 341 cagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcgcacgtgga 400
||||||||||||||||||||||||| |||||||| ||||| || | |||||||||||
Sbjct: 329 cagccagctgatcgggttccagagcgtgcacctgcgggcggacaaggccgcgcacgtgga 270
Query: 401 gttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcaggaaggtgat 460
||||||||||||||||||||||||||| ||||||||| ||||||| ||| | ||||||||
Sbjct: 269 gttcgaggtgagcccctgcaagcacttgagccgggcggcggaggacggccgcaaggtgat 210
Query: 461 cgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagcttcatggc 520
||| ||||||||||||||||| | ||||||||| || ||||||||| |||||||||||||
Sbjct: 209 cgaccagggctcgcacttcgtcagggtcggcgacgacgagttcgagttgagcttcatggc 150
>gb|AL512219.1|AL512219 AL512219 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10M22u 3',
mRNA sequence
Length = 351
Score = 196 bits (99), Expect = 5e-049
Identities = 160/178 (89%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 344 ccagctgatcgggttccagagcctgcacctgagggcg-acgcagacggcgcacgtggagt 402
|||||||||||||| ||||||| |||||||| ||||| ||| || | |||||||||||||
Sbjct: 351 ccagctgatcgggtnccagagcgtgcacctgcgggcggacg-aggccgcgcacgtggagt 293
Query: 403 tcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcg 462
||||||||||||||||||||||||| ||||||||| ||||||| ||| | ||||||||||
Sbjct: 292 tcgaggtgagcccctgcaagcacttgagccgggcggcggaggacggccgcaaggtgatcg 233
Query: 463 atcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagcttcatggc 520
| ||||||||||||||||| | ||||||||| || ||||||||| |||||||||||||
Sbjct: 232 accagggctcgcacttcgtcagggtcggcgacgacgagttcgagttgagcttcatggc 175
>gb|BI776777.2|BI776777 EBpi07_SQ001_L15_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_L15 5', mRNA sequence
Length = 290
Score = 184 bits (93), Expect = 2e-045
Identities = 170/196 (86%), Gaps = 6/196 (3%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 97 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 156
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 157 ggtgcgggtgcagaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 216
Query: 305 ctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccagag 364
|||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 217 tgggccgaacgcgacgga------cgggcggcccgccagccagctgatcgggttccagag 270
Query: 365 cctgcacctgagggcg 380
| |||||||| |||||
Sbjct: 271 cgtgcacctgcgggcg 286
>gb|BU988389.1|BU988389 HF17H23r HF Hordeum vulgare subsp. vulgare cDNA clone HF17H23
5-PRIME, mRNA sequence
Length = 426
Score = 167 bits (84), Expect = 5e-040
Identities = 117/128 (91%)
Strand = Plus / Plus
Query: 393 cacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatggcagg 452
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct: 145 cacgtggagttcgaggtgagcccctgcaagcacttgagccgggcggcggaggacggccgc 204
Query: 453 aaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgagatgagc 512
||||||||||| ||||||||||||||||| | ||||||||| || ||||||||| |||||
Sbjct: 205 aaggtgatcgaccagggctcgcacttcgtcagggtcggcgacgacgagttcgagttgagc 264
Query: 513 ttcatggc 520
||||||||
Sbjct: 265 ttcatggc 272
Score = 117 bits (59), Expect = 4e-025
Identities = 112/130 (86%), Gaps = 6/130 (4%)
Strand = Plus / Plus
Query: 251 ggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcc 310
|||||||| |||||||||||||||||| | |||| |||||||| ||||| |||| |||||
Sbjct: 9 ggtgcagacccacgggcccatggacggcaggcacccggtgctgctgttcctgcggtggcc 68
Query: 311 caacgcgacggacggcagcggccggccggccagccagctgatcgggttccagagcctgca 370
||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 69 gaacgcgacgga------cgggcggcccgccagccagctgatcgggttccagagcgtgca 122
Query: 371 cctgagggcg 380
|||| |||||
Sbjct: 123 cctgcgggcg 132
>gb|BQ760249.1|BQ760249 EBpi07_SQ003_M14_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_M14 5', mRNA sequence
Length = 518
Score = 155 bits (78), Expect = 2e-036
Identities = 125/141 (88%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 375 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 434
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
|||||||||||| |||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 435 ggtgcgggtgcanaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 494
Query: 305 ctggcccaacgcgacggacgg 325
||||| ||||||||||||||
Sbjct: 495 gtggccgaacgcgacggacgg 515
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 179 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 238
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 239 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 293
>gb|BF628954.2|BF628954 HVSMEb0009F03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009F03f, mRNA sequence
Length = 718
Score = 145 bits (73), Expect = 2e-033
Identities = 207/252 (82%), Gaps = 6/252 (2%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
|||||||||| |||||| || || ||||| |||||||| ||||| |||||| |||||
Sbjct: 463 gagctacgacatggaggatatgggcgcggaggcgtgcgacaggctccggttccctgcggt 522
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
|||||||||||| |||||| ||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 523 ggtgcgggtgcataaccacaggcccatggacggtaggcacccggtgctgctgttcctgcg 582
Query: 305 ctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggttccagag 364
||||| ||||||||||| ||| ||| | |||| |||||||||||||||||||||
Sbjct: 583 gtggccgaacgcgacgga------cgggcggtccgccatccagctgatcgggttccagag 636
Query: 365 cctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagca 424
| |||||||| ||||| | | |||||||||||||| ||||||||| ||| ||||
Sbjct: 637 cgtgcacctgcgggcggacaatgccgcgcacgtggagttttaggtgagcctctggaagcc 696
Query: 425 cttcagccgggc 436
||| ||||||||
Sbjct: 697 cttgagccgggc 708
Score = 87.7 bits (44), Expect = 3e-016
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 267 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 326
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgctt 112
| |||| ||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 327 ccgtgtacaacttctgttacggcctgagctactacaagtactcccaccgctt 378
>gb|BQ468512.1|BQ468512 HM01H14T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H14
5-PRIME, mRNA sequence
Length = 600
Score = 123 bits (62), Expect = 6e-027
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||||||||||||| ||| || ||||| |||||||| ||||| ||| ||||||||
Sbjct: 474 gagctacgacgtggaggagatgggcgcggaggcgtgcgacaggctccggtttccggcggt 533
Query: 245 ggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcg 304
|||||||||||| |||||||||||||||||||| | |||| |||||||| ||||| ||||
Sbjct: 534 ggtgcgggtgcacaaccacgggcccatggacggcaggcacccggtgctgctgttcctgcg 593
Query: 305 ctggcc 310
|||||
Sbjct: 594 gtggcc 599
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 278 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 337
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 338 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 392
>gb|BI960413.1|BI960413 HVSMEn0024I08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I08f, mRNA sequence
Length = 699
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 355 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 414
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 415 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 469
>gb|BQ468849.1|BQ468849 HM02I18r HM Hordeum vulgare subsp. vulgare cDNA clone HM02I18
5-PRIME, mRNA sequence
Length = 607
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||||| ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 398 tgcgcgccgacccgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 457
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 458 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 512
>gb|BU982554.1|BU982554 HA26O10r HA Hordeum vulgare subsp. vulgare cDNA clone HA26O10
5-PRIME, mRNA sequence
Length = 609
Score = 115 bits (58), Expect = 2e-024
Identities = 115/134 (85%)
Strand = Plus / Plus
Query: 188 ctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggtggt 247
|||||||||||||| ||||||| | ||| |||||| | |||||||||||||||||||||
Sbjct: 246 ctacgacgtggaggagatcggggccgagcggtgcgaacagctcaagttcccggcggtggt 305
Query: 248 gcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctg 307
|||| |||||||||| ||||||||||| |||||||||||| | ||||| | || ||
Sbjct: 306 cgaggtggagaaccacggtcccatggacggaaagcactcggtgttattgttcctccgatg 365
Query: 308 gcccaacgcgacgg 321
||||||||||||||
Sbjct: 366 gcccaacgcgacgg 379
Score = 93.7 bits (47), Expect = 6e-018
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||| ||| |||||||||||||| | ||||| |||||||| || ||||
Sbjct: 50 tgcgcgccgacccggtcaccggctaccccggccgtagctaccgcttctaccggggaccga 109
Query: 61 cagtgttcaacttcggctacggcctcagctactcc 95
| || | ||| ||||||||||||||||||||||||
Sbjct: 110 ccgtctacaagttcggctacggcctcagctactcc 144
>gb|AL511547.1|AL511547 AL511547 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08G20u 3',
mRNA sequence
Length = 566
Score = 111 bits (56), Expect = 2e-023
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 420 gtgcgagcagctcaagttcccggcggtggtcgaggtgcagaaccacggtcccctggacgg 361
Query: 278 gaagcactcggtgctggtgttcatgcgctggcccaacgcgacgg 321
||||||||| |||||| ||||| | || ||||||||||||||||
Sbjct: 360 gaagcactctgtgctgatgttcctccggtggcccaacgcgacgg 317
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||||| ||| |||||| ||||||||||| |||||||||||||
Sbjct: 223 agcactttagcagggcgagggaggatggcaagaaggtgatcgat 180
>gb|AV925753.1|AV925753 AV925753 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25k17 5', mRNA sequence
Length = 582
Score = 111 bits (56), Expect = 2e-023
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 248 gtgcgagcagctcaagttcccggcggtggtcgaggtgcagaaccacggtcccctggacgg 307
Query: 278 gaagcactcggtgctggtgttcatgcgctggcccaacgcgacgg 321
||||||||| |||||| ||||| | || ||||||||||||||||
Sbjct: 308 gaagcactctgtgctgatgttcctccggtggcccaacgcgacgg 351
Score = 73.8 bits (37), Expect = 5e-012
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| || ||||| ||||||| ||||| ||||||| |||
Sbjct: 19 tgcgcgccgacccggccaccggataccctggccggagctaccgcttctaccagggcaacg 78
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactccc 105
| |||| ||| ||||||||||||||||| |||||||||| |||||
Sbjct: 79 ccgtgtacaagttcggctacggcctcagttactccaagttctccc 123
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||||| ||| |||||| ||||||||||| |||||||||||||
Sbjct: 445 agcactttagcagggcgagggaggatggcaagaaggtgatcgat 488
>gb|AV930889.1|AV930889 AV930889 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25k17 3', mRNA sequence
Length = 673
Score = 111 bits (56), Expect = 2e-023
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 477 gtgcgagcagctcaagttcccggcggtggtcgaggtgcagaaccacggtcccctggacgg 418
Query: 278 gaagcactcggtgctggtgttcatgcgctggcccaacgcgacgg 321
||||||||| |||||| ||||| | || ||||||||||||||||
Sbjct: 417 gaagcactctgtgctgatgttcctccggtggcccaacgcgacgg 374
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||||| ||| |||||| ||||||||||| |||||||||||||
Sbjct: 280 agcactttagcagggcgagggaggatggcaagaaggtgatcgat 237
Score = 40.1 bits (20), Expect = 0.073
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 63 gtgttcaacttcggctacggcctcagctactccaagtactccc 105
|||| ||| ||||| |||||| |||| |||||||||| |||||
Sbjct: 644 gtgtacaagttcggntacggcttcagttactccaagttctccc 602
>gb|BU972244.1|BU972244 HB21B09r BC Hordeum vulgare subsp. vulgare cDNA clone HB21B09
5-PRIME, mRNA sequence
Length = 513
Score = 111 bits (56), Expect = 2e-023
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 226 ggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcact 285
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct: 10 ggctcaagttcccggcggtggtcgaggtgcagaaccacggtcccctggacgggaagcact 69
Query: 286 cggtgctggtgttcatgcgctggcccaacgcgacgg 321
| |||||| ||||| | || ||||||||||||||||
Sbjct: 70 ctgtgctgatgttcctccggtggcccaacgcgacgg 105
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||||| ||| |||||| ||||||||||| |||||||||||||
Sbjct: 199 agcactttagcagggcgagggaggatggcaagaaggtgatcgat 242
>gb|BU972337.1|BU972337 HB21F19r BC Hordeum vulgare subsp. vulgare cDNA clone HB21F19
5-PRIME, mRNA sequence
Length = 513
Score = 111 bits (56), Expect = 2e-023
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 226 ggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcact 285
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct: 10 ggctcaagttcccggcggtggtcgaggtgcagaaccacggtcccctggacgggaagcact 69
Query: 286 cggtgctggtgttcatgcgctggcccaacgcgacgg 321
| |||||| ||||| | || ||||||||||||||||
Sbjct: 70 ctgtgctgatgttcctccggtggcccaacgcgacgg 105
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||||| ||| |||||| ||||||||||| |||||||||||||
Sbjct: 199 agcactttagcagggcgagggaggatggcaagaaggtgatcgat 242
>gb|BM372495.2|BM372495 EBpi05_SQ003_C02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C02 5', mRNA sequence
Length = 418
Score = 109 bits (55), Expect = 9e-023
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||| | ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 239 tgcgcgccgacctgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 298
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 353
>gb|BM372498.2|BM372498 EBpi05_SQ003_C05_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C05 5', mRNA sequence
Length = 505
Score = 109 bits (55), Expect = 9e-023
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||| | ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 239 tgcgcgccgacctgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 298
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 353
Score = 71.9 bits (36), Expect = 2e-011
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggt 244
||||||| ||||||||| ||| || ||||| |||||||| ||||| ||||||||||||
Sbjct: 435 gagctacnacgtggaggagatgggcgcggaggcgtgcgacaggctccggttcccggcggt 494
Query: 245 ggtgcgggtgc 255
|||||||||||
Sbjct: 495 ggtgcgggtgc 505
>gb|BM372479.2|BM372479 EBpi05_SQ003_B09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B09 5', mRNA sequence
Length = 418
Score = 109 bits (55), Expect = 9e-023
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||| | ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 239 tgcgcgccgacctgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 298
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 353
>gb|BM372501.2|BM372501 EBpi05_SQ003_C08_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C08 5', mRNA sequence
Length = 475
Score = 109 bits (55), Expect = 9e-023
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
|||||||||||| | ||||||||||||| || || || ||| |||||||| ||| ||
Sbjct: 239 tgcgcgccgacctgtccacgggctacccggggcgcacctacaggttctacaagggcaaga 298
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgc 115
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 ccgtgtacaacttcggctacggcctgagctactccaagtactcccaccgcttcgc 353
Score = 40.1 bits (20), Expect = 0.073
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 185 gagctacgacgtggaggcgatcgggtcggagacgtgcgac 224
||||||||||||||||| ||| || ||||| ||||||||
Sbjct: 435 gagctacgacgtggaggagatgggcgcggaggcgtgcgac 474
>gb|BI953145.1|BI953145 HVSMEm0011E01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011E01f, mRNA sequence
Length = 831
Score = 73.8 bits (37), Expect = 5e-012
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| || ||||| ||||||| ||||| ||||||| |||
Sbjct: 203 tgcgcgccgacccggccaccggataccctggccggagctaccgcttctaccagggcaacg 262
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactccc 105
| |||| ||| ||||||||||||||||| |||||||||| |||||
Sbjct: 263 ccgtgtacaagttcggctacggcctcagttactccaagttctccc 307
>gb|CA021686.1|CA021686 HZ40M22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40M22
5-PRIME, mRNA sequence
Length = 467
Score = 63.9 bits (32), Expect = 5e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| || ||||||||||||| ||||| ||||||| || ||
Sbjct: 279 tgcgcgccgacccggccaccggttaccccggccggagctaccgcttctaccagggagaga 338
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| || || |||||||||||||||||||
Sbjct: 339 ctgtctacaagtttggttacggcctcagctactcca 374
>gb|CA022183.1|CA022183 HZ42G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42G07
5-PRIME, mRNA sequence
Length = 606
Score = 63.9 bits (32), Expect = 5e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||||||||| || ||||||||||||| ||||| ||||||| || ||
Sbjct: 359 tgcgcgccgacccggccaccggttaccccggccggagctaccgcttctaccagggagaga 418
Query: 61 cagtgttcaacttcggctacggcctcagctactcca 96
| || | ||| || || |||||||||||||||||||
Sbjct: 419 ctgtctacaagtttggttacggcctcagctactcca 454
>gb|BI956257.1|BI956257 HVSMEn0001K14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001K14f, mRNA sequence
Length = 630
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
||||||||||| |||||||||||||||||||||
Sbjct: 14 acgggctacccgggccggacgtaccggttctac 46
>gb|BI957789.1|BI957789 HVSMEn0011F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011F10f, mRNA sequence
Length = 1152
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
||||||||||| |||||||||||||||||||||
Sbjct: 35 acgggctacccgggccggacgtaccggttctac 67
>gb|BG418646.2|BG418646 HVSMEk0023K20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023K20f, mRNA sequence
Length = 549
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
||||||||||| |||||||||||||||||||||
Sbjct: 74 acgggctacccgggccggacgtaccggttctac 106
>gb|BQ471891.1|BQ471891 HV03M17r HV Hordeum vulgare subsp. vulgare cDNA clone HV03M17
5-PRIME, mRNA sequence
Length = 419
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
||||||||||| |||||||||||||||||||||
Sbjct: 320 acgggctacccgggccggacgtaccggttctac 352
>gb|BE214238.1|BE214238 HV_CEb0002M24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0002M24f, mRNA sequence
Length = 733
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggc 23
|||||| ||||||||||||||||
Sbjct: 526 tgcgcgtcgacccggccacgggc 548
>gb|BF065327.1|BF065327 HV_CEb0012C04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012C04f, mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggc 23
|||||| ||||||||||||||||
Sbjct: 25 tgcgcgtcgacccggccacgggc 47
>gb|BF264226.2|BF264226 HV_CEa0008N18f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008N18f, mRNA sequence
Length = 649
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggc 23
|||||| ||||||||||||||||
Sbjct: 140 tgcgcgtcgacccggccacgggc 162
>gb|BF265677.2|BF265677 HV_CEa0013A18f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013A18f, mRNA sequence
Length = 762
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggc 23
|||||| ||||||||||||||||
Sbjct: 14 tgcgcgtcgacccggccacgggc 36
>gb|BF064882.3|BF064882 HV_CEb0021F24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021F24f, mRNA sequence
Length = 801
Score = 38.2 bits (19), Expect = 0.29
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggc 23
|||||| ||||||||||||||||
Sbjct: 79 tgcgcgtcgacccggccacgggc 101
>gb|BI778802.2|BI778802 EBro01_SQ001_J02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_J02 5', mRNA sequence
Length = 593
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 383 gcggccggccggccagcca 365
>gb|BI779123.2|BI779123 EBro01_SQ003_B06_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_B06 5', mRNA sequence
Length = 515
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 278 gcggccggccggccagcca 260
>gb|BI779297.2|BI779297 EBro01_SQ003_J13_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_J13 5', mRNA sequence
Length = 373
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 119 gcggccggccggccagcca 101
>gb|BM097374.2|BM097374 EBro01_SQ004_P06_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_P06 5', mRNA sequence
Length = 596
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 386 gcggccggccggccagcca 368
>gb|BM369999.2|BM369999 EBro08_SQ002_K02_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_K02 5', mRNA sequence
Length = 522
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 252 gcggccggccggccagcca 234
>gb|BQ762728.1|BQ762728 EBro02_SQ004_K21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_K21 5', mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 384 gcggccggccggccagcca 366
>gb|BQ762738.1|BQ762738 EBro02_SQ004_M21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_M21 5', mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 374 gcggccggccggccagcca 356
>gb|BQ765288.1|BQ765288 EBro03_SQ006_B23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_B23 5', mRNA sequence
Length = 550
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagcca 346
|||||||||||||||||||
Sbjct: 316 gcggccggccggccagcca 298
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,747
Number of Sequences: 312970
Number of extensions: 77747
Number of successful extensions: 21371
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21234
Number of HSP's gapped (non-prelim): 116
length of query: 542
length of database: 175,134,539
effective HSP length: 19
effective length of query: 523
effective length of database: 169,188,109
effective search space: 88485381007
effective search space used: 88485381007
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)