BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedl... 210 4e-053
gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-a... 210 4e-053
gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm libra... 210 4e-053
gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke devel... 202 1e-050
gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 ... 202 1e-050
gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedl... 202 1e-050
gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. v... 202 1e-050
gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. v... 202 1e-050
gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. v... 202 1e-050
gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. v... 202 1e-050
gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, n... 202 1e-050
gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hyd... 202 1e-050
gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA,... 202 1e-050
gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, wat... 202 1e-050
gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, dro... 202 1e-050
gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. v... 202 1e-050
gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. v... 202 1e-050
gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. v... 202 1e-050
gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. v... 202 1e-050
gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. v... 202 1e-050
gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. v... 202 1e-050
gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgar... 202 1e-050
gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day ger... 198 1e-049
gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. v... 198 1e-049
gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, n... 196 6e-049
gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke devel... 194 2e-048
gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa... 194 2e-048
gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA,... 188 1e-046
gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day ger... 149 1e-034
gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-a... 133 7e-030
gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subs... 129 1e-028
gb|BQ658040.1|BQ658040 HA06A19u HA Hordeum vulgare subsp. v... 129 1e-028
gb|BU987611.1|BU987611 HF15E01r HF Hordeum vulgare subsp. v... 119 1e-025
gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day ger... 111 3e-023
gb|BU983331.1|BU983331 HA29G02r HA Hordeum vulgare subsp. v... 92 2e-017
gb|CA017960.1|CA017960 HV06P07r HV Hordeum vulgare subsp. v... 38 0.32
>gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020H09f, mRNA sequence
Length = 573
Score = 210 bits (106), Expect = 4e-053
Identities = 190/218 (87%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 264 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 205
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 204 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 145
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 144 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 85
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 84 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 47
>gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007I06f, mRNA sequence
Length = 524
Score = 210 bits (106), Expect = 4e-053
Identities = 190/218 (87%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 266 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 207
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 206 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 147
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 146 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 87
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 86 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 49
>gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e5 5' similar to DNA-directed
RNA polymerase II, putative, mRNA sequence
Length = 525
Score = 210 bits (106), Expect = 4e-053
Identities = 190/218 (87%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 238 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 179
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 178 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 119
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 118 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 59
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 58 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 21
>gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23T 5',
mRNA sequence
Length = 547
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 292 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 233
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 232 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 173
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 172 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 113
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 112 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 75
>gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099M19f, mRNA sequence
Length = 524
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 238 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 179
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 178 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 119
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 118 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 59
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
| ||||||||||||||||| || ||||| |||||||||
Sbjct: 58 tcccgcaggtgaagcagcgaaccgggatgatcatcttc 21
>gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B05f, mRNA sequence
Length = 571
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 245
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 244 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 185
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 184 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 125
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 124 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 87
>gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
5-PRIME, mRNA sequence
Length = 537
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 263
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 262 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 203
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 202 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 143
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 142 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 105
>gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. vulgare cDNA clone HX02P15
5-PRIME, mRNA sequence
Length = 598
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 352 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 293
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 292 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 233
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 232 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 173
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 172 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 135
>gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
5-PRIME, mRNA sequence
Length = 530
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 280 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 221
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 220 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 161
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 160 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 101
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 100 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 63
>gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
3-PRIME, mRNA sequence
Length = 473
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Plus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 251 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 310
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 311 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 370
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 371 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 430
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 431 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 468
>gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I19 5', mRNA sequence
Length = 522
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 228 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 169
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 168 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 109
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 108 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 49
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 48 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 11
>gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_B18 5', mRNA sequence
Length = 458
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 265 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 206
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 205 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 146
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 145 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 86
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 85 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 48
>gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_F05 5', mRNA sequence
Length = 533
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 259 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 200
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 199 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 140
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 139 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 80
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 79 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 42
>gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B22 5', mRNA sequence
Length = 500
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 242 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 183
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 182 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 123
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 122 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 63
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 62 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 25
>gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M23 5', mRNA sequence
Length = 631
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 286 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 227
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 226 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 167
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 166 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 107
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 106 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 69
>gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H02
5-PRIME, mRNA sequence
Length = 531
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 308 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 249
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 248 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 189
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 188 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 129
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 128 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 91
>gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12N18
5-PRIME, mRNA sequence
Length = 540
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 202
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 201 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 142
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 141 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 82
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 81 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 44
>gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
5-PRIME, mRNA sequence
Length = 558
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 272 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 213
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 212 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 153
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 152 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 93
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 92 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 55
>gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42D22
5-PRIME, mRNA sequence
Length = 502
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 230 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 171
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 170 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 111
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 110 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 51
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 50 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 13
>gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C01
5-PRIME, mRNA sequence
Length = 506
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 266 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 207
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 206 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 147
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 146 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 87
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 86 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 49
>gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
3-PRIME, mRNA sequence
Length = 558
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Plus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 289 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 348
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 349 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 408
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 409 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 468
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 469 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 506
>gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E161 5-PRIME, mRNA sequence
Length = 724
Score = 202 bits (102), Expect = 1e-050
Identities = 189/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 267
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 266 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 207
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 206 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 147
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 146 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 109
>gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_O01 5', mRNA sequence
Length = 349
Score = 198 bits (100), Expect = 1e-049
Identities = 181/208 (87%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 209 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 150
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 149 gggtcatgagcatacggcggcagcagtagcgaaacaagcccaaggcatccagagcatccc 90
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 89 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 30
Query: 459 tgccgcaggtgaagcagcgcactgggat 486
||||||||||||||||||| || |||||
Sbjct: 29 tgccgcaggtgaagcagcgaaccgggat 2
>gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59K23
5-PRIME, mRNA sequence
Length = 265
Score = 198 bits (100), Expect = 1e-049
Identities = 187/216 (86%)
Strand = Plus / Minus
Query: 281 cttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgt 340
|||||||| |||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 265 cttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacatgg 206
Query: 341 gtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatcccct 400
||||||||||| || | |||||||||||| | ||| |||| |||||||||||||||||
Sbjct: 205 gtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccccc 146
Query: 401 tctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttg 460
|| | ||| || |||||||| || |||||||| | |||||||||||||| || ||||||
Sbjct: 145 tcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcaccttg 86
Query: 461 ccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||| || ||||| |||||||||
Sbjct: 85 ccgcaggtgaagcagcgaaccgggatgatcatcttc 50
>gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_E09 5', mRNA sequence
Length = 494
Score = 196 bits (99), Expect = 6e-049
Identities = 186/215 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 215 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 156
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 155 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 96
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 95 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 36
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatc 493
||||||||||||||||||| || ||||| ||||||
Sbjct: 35 tgccgcaggtgaagcagcgaaccgggatgatcatc 1
>gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23u 3',
mRNA sequence
Length = 563
Score = 194 bits (98), Expect = 2e-048
Identities = 188/218 (86%)
Strand = Plus / Plus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 357
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 358 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 417
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 418 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 477
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
|||||||||||||||| || || ||||| |||||||||
Sbjct: 478 tgccgcaggtgaagcaacgaaccgggatgatcatcttc 515
>gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004K11f, mRNA sequence
Length = 630
Score = 194 bits (98), Expect = 2e-048
Identities = 188/218 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 aacttgtctctgtcttttccagggtgttgtagttgagcaacttctcgatgaggtcaacat 242
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 241 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 182
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 181 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 122
Query: 459 tgccgcaggtgaagcagcgcactgggataatcatcttc 496
||||||||||||||||||| || ||||| |||||||||
Sbjct: 121 tgccgcaggtgaagcagcgaaccgggatgatcatcttc 84
>gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_I20 5', mRNA sequence
Length = 545
Score = 188 bits (95), Expect = 1e-046
Identities = 173/199 (86%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 199 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 140
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 139 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 80
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
| || | ||| || |||||||| || |||||||| | |||||||||||||| || ||||
Sbjct: 79 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcccgatcacct 20
Query: 459 tgccgcaggtgaagcagcg 477
|||||||||||||||||||
Sbjct: 19 tgccgcaggtgaagcagcg 1
>gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_F19 5', mRNA sequence
Length = 518
Score = 149 bits (75), Expect = 1e-034
Identities = 147/171 (85%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 171 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 112
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 111 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 52
Query: 399 cttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcc 449
| || | ||| || |||||||| || |||||||| | |||||||||||||
Sbjct: 51 cctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcc 1
>gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016E15f, mRNA sequence
Length = 427
Score = 133 bits (67), Expect = 7e-030
Identities = 132/154 (85%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 161 aacttgtctccgtcttctccagggtgttgtagttgagcaacttctcgataaggtcaacat 102
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| || ||||||||||||
Sbjct: 101 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggccaccagagcatccc 42
Query: 399 cttctgagtagtcggcctggaggaggtcgaggta 432
| || | ||| || |||||||| || ||||||||
Sbjct: 41 cntcggtgtaatcagcctggagaagatcgaggta 8
>gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073B09F1, mRNA sequence
Length = 240
Score = 129 bits (65), Expect = 1e-028
Identities = 107/121 (88%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 140 aacttgtctccgtcttctccagcgtgttgtagttgagcaacttctcgataaggtcaacat 81
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 80 gggtcatgagcatacggcggcagcagtagcgaaccaagcccaaggcatccagagcatccc 21
Query: 399 c 399
|
Sbjct: 20 c 20
>gb|BQ658040.1|BQ658040 HA06A19u HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
3-PRIME, mRNA sequence
Length = 471
Score = 129 bits (65), Expect = 1e-028
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 351 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 410
Query: 339 gtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatccc 398
| ||||||||||| || | ||||||||| || | ||| |||| ||||| ||||||||||
Sbjct: 411 gggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatccc 470
Query: 399 c 399
|
Sbjct: 471 c 471
>gb|BU987611.1|BU987611 HF15E01r HF Hordeum vulgare subsp. vulgare cDNA clone HF15E01
5-PRIME, mRNA sequence
Length = 441
Score = 119 bits (60), Expect = 1e-025
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacat 338
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 351 aacttgtctctgtcttctccagggtgttgtagttgagcaacttctcgatgaggtcaacat 410
Query: 339 gtgtcatgagcattcgcctgcagcagta 366
| ||||||||||| || | |||||||||
Sbjct: 411 gggtcatgagcatacggcggcagcagta 438
>gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_B04 5', mRNA sequence
Length = 533
Score = 111 bits (56), Expect = 3e-023
Identities = 144/172 (83%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 279 aacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaa-tgaggtcaaca 337
|||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct: 172 aacttgtctctgtcttctccagggtgttgtagttgagcaacttgtagggtgaggtcaaca 113
Query: 338 tgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatcc 397
|| ||||||||||| || | ||||||||| || | ||| |||| ||||| |||||||||
Sbjct: 112 tgggtcatgagcatacggcggcagcagtaccgaaccaagcccaaggcatcaagagcatcc 53
Query: 398 ccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcc 449
|| || | ||| || |||||||| || |||||||| | |||||||||||||
Sbjct: 52 ccctcggtgtaatcagcctggagaagatcgaggtagtggtcccacttgttcc 1
>gb|BU983331.1|BU983331 HA29G02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29G02
5-PRIME, mRNA sequence
Length = 190
Score = 91.7 bits (46), Expect = 2e-017
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 383 gcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatcccac 442
||||| ||||||||||| || | ||| || ||||||| || |||||||| | ||||||
Sbjct: 186 gcatcaagagcatccccctcggtgtaatcagcctggataagatcgaggtagtggtcccac 127
Query: 443 ttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttc 496
|||||||| || ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 126 ttgttcccgatcaccttgccgcaggtgaagcagcgaaccgggatgatcatcttc 73
>gb|CA017960.1|CA017960 HV06P07r HV Hordeum vulgare subsp. vulgare cDNA clone HV06P07
5-PRIME, mRNA sequence
Length = 435
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 553 cgtttggtcgttgcctcgt 571
|||||||||||||||||||
Sbjct: 23 cgtttggtcgttgcctcgt 5
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,844
Number of Sequences: 312970
Number of extensions: 65844
Number of successful extensions: 20233
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20195
Number of HSP's gapped (non-prelim): 38
length of query: 605
length of database: 175,134,539
effective HSP length: 19
effective length of query: 586
effective length of database: 169,188,109
effective search space: 99144231874
effective search space used: 99144231874
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)