BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437842.2.1
(1093 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedl... 605 e-171
gb|BQ465081.1|BQ465081 HU02J12r HU Hordeum vulgare subsp. v... 498 e-139
gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 ... 440 e-122
gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachi... 438 e-121
gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-a... 408 e-112
gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, dro... 369 e-100
gb|BF253382.2|BF253382 HVSMEf0001A07f Hordeum vulgare seedl... 363 8e-099
gb|CK123691.1|CK123691 BES1824105b17 BES1824 Hordeum vulgar... 363 8e-099
gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hyd... 329 1e-088
gb|BE193837.3|BE193837 HVSMEh0082K14f Hordeum vulgare 5-45 ... 325 2e-087
gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. v... 299 1e-079
gb|BI959998.1|BI959998 HVSMEn0022N01f Hordeum vulgare rachi... 293 6e-078
gb|BE411374.1|BE411374 ISC004.H10F990609 ITEC ISC Barley Le... 285 2e-075
gb|BE411643.1|BE411643 ISC007.G04F990714 ITEC ISC Barley Le... 270 9e-071
gb|CA012845.1|CA012845 HT06J23r HT Hordeum vulgare subsp. v... 256 1e-066
gb|BF260187.2|BF260187 HVSMEf0021F10f Hordeum vulgare seedl... 226 1e-057
gb|BI958356.1|BI958356 HVSMEn0014I24f Hordeum vulgare rachi... 204 4e-051
gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedl... 141 6e-032
gb|BE215262.2|BE215262 HV_CEb0006F04f Hordeum vulgare seedl... 141 6e-032
gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachi... 133 1e-029
gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA li... 111 5e-023
gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke devel... 86 3e-015
gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgar... 62 4e-008
gb|CA024506.1|CA024506 HZ49H23r HZ Hordeum vulgare subsp. v... 42 0.038
gb|CA027848.1|CA027848 HZ60D14r HZ Hordeum vulgare subsp. v... 42 0.038
gb|BI948310.1|BI948310 HVSMEl0008P24f Hordeum vulgare spike... 40 0.15
gb|BQ763531.1|BQ763531 EBro02_SQ008_J16_R root, 3 week, hyd... 40 0.15
>gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015K22f, mRNA sequence
Length = 817
Score = 605 bits (305), Expect = e-171
Identities = 576/661 (87%), Gaps = 4/661 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 118 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 177
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 178 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 237
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 238 gacggaggccgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcgccgt 297
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcgga-gctgaagatcgtcgacccag 262
|||||| || ||||| ||||| || || |||||||||| ||| |||||||||||||| |
Sbjct: 298 caagtcggggtcctgcggcacggtggtgcggaacgcggaagctcaagatcgtcgaccccg 357
Query: 263 acaccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaa 322
||||| |||| || || | || |||| ||| || ||||| |||||||||||| | || |
Sbjct: 358 acaccggcgcctccctcgcccgcaacctgcccggggagatctgcatccgcggcaagcaga 417
Query: 323 tcatgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggat 382
||||||||||||| || |||||||| ||||| ||||||||||||| ||| ||||| || |
Sbjct: 418 tcatgaaaggttacctaaatgatccggaggccacaaagaacaccactgacaaggatggtt 477
Query: 383 ggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgaca 442
|| |||||||||| ||||| ||||| || || || || ||||||||||||||||| ||||
Sbjct: 478 ggttgcacactggagacatcggttatgtcgatgatgatgacgagatcttcatcgtcgaca 537
Query: 443 ggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagccc 502
|||| || |||||||||||||||||||| |||||||||||||||||||| || ||| |||
Sbjct: 538 ggctcaaagagataatcaaatacaagggattccaagtacctcctgcggaactcgaacccc 597
Query: 503 ttctcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaagtcg 562
||||||| ||||| |||||||||| ||||| |||||||| |||||| |||||||| |
Sbjct: 598 ttctcattacacacgctgaaatcaaagatgctgctgttgtatcgatgcaagatgaactta 657
Query: 563 ccggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgagaacg 622
| || ||||| || || ||||||||| | || | |||||||||||||||||| |||| ||
Sbjct: 658 ctggtgaagtaccagttgcattcattgtgcggattgaaggctctgagatcagcgagagcg 717
Query: 623 agatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagttttct 682
||||||||||||||| |||||| ||||| || |||||||| |||||| ||| ||||||||
Sbjct: 718 agatcaagcagtttggtgcaaaagaggttgt-ttctacaa-aggatccaca-agttttct 774
Query: 683 t 683
|
Sbjct: 775 t 775
>gb|BQ465081.1|BQ465081 HU02J12r HU Hordeum vulgare subsp. vulgare cDNA clone HU02J12
5-PRIME, mRNA sequence
Length = 633
Score = 498 bits (251), Expect = e-139
Identities = 407/459 (88%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 175 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 234
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 235 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 294
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 295 gacggaggccgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcgccgt 354
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
|||||| || ||||| ||||| || || ||||||||||||| |||||||||||||| ||
Sbjct: 355 caagtcggggtcctgcggcacggtggtgcggaacgcggagctcaagatcgtcgaccccga 414
Query: 264 caccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaat 323
|||| |||| || || | || |||| ||| || ||||| |||||||||||| | || ||
Sbjct: 415 caccggcgcctccctcgcccgcaacctgcctggggagatctgcatccgcggcaagcagat 474
Query: 324 catgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatg 383
|||||||||||| || |||||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct: 475 catgaaaggttacctaaatgatccggaggccacaaagaacaccattgacaaggatggttg 534
Query: 384 gctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacag 443
| |||||||||| ||||| ||||| || || || || ||||||||||||||||| |||||
Sbjct: 535 gttgcacactggagacatcggttatgtcgatgatgatgacgagatcttcatcgtcgacag 594
Query: 444 gctgaaggagataatcaaatacaagggcttccaagtacc 482
||| || |||||||||||||||||||| |||||||||||
Sbjct: 595 gctcaaagagataatcaaatacaagggattccaagtacc 633
>gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094P16f, mRNA sequence
Length = 685
Score = 440 bits (222), Expect = e-122
Identities = 486/574 (84%)
Strand = Plus / Plus
Query: 40 tccatccgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttc 99
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 4 tccatccgcatggtcatgtccggcgccgcgcccatgggcaaggagctgcaggacgccttc 63
Query: 100 atggccaagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggccc 159
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 64 atggccaagatccccaacgccgtgctcgggcaggggtacgggatgacggaggccgggccg 123
Query: 160 gtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgt 219
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||
Sbjct: 124 gtgctggccatgtgcctggcgttcgccaaggagccgttcaaggtcaagtccgggtcgtgc 183
Query: 220 ggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacaccagcgcgtcgctg 279
||||| || || | ||||| | ||| |||||||||||||| |||||| |||| || ||
Sbjct: 184 ggcacggtggtgcgcaacgccgggctcaagatcgtcgaccccgacaccggcgcctccctc 243
Query: 280 ggacggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctg 339
|| ||||||||||| |||||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 244 ggccggaaccagcccggcgagatctgcatccgcggggagcagatcatgaaaggttacctt 303
Query: 340 aatgatccagaggcgacaaagaacaccattgataaggacggatggctgcacactggggac 399
|| || ||||| | || ||||||||||| || ||||| || ||||||||||| || |||
Sbjct: 304 aacgacccagaatccaccaagaacaccatcgacaaggatggctggctgcacaccggagac 363
Query: 400 attggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaaggagataatc 459
|| || ||| ||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 364 atcggcatcgtcgacgacgacgacgagatcttcattgttgacaggctcaaggagatcatc 423
Query: 460 aaatacaagggcttccaagtacctcctgcggagcttgaagcccttctcatcacacatcct 519
|| |||||||||||||| || | || || ||||| || ||||| |||||||| || ||
Sbjct: 424 aagtacaagggcttccaggtggcgccggcagagctcgaggccctcctcatcacccacccg 483
Query: 520 gaaatcaaggatgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtg 579
|| |||||||| ||||| || || ||| |||| || || | || |||||||||||| |
Sbjct: 484 gagatcaaggacgccgccgtcgtatcgctgaaggacgatcttgctggcgaagtcccgatc 543
Query: 580 gcattcattatacgcagtgaaggctctgagatca 613
|| ||| |||| || | ||||||||||| ||||
Sbjct: 544 gccttcgttatgcggatcgaaggctctgaaatca 577
>gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006D04f, mRNA sequence
Length = 654
Score = 438 bits (221), Expect = e-121
Identities = 395/453 (87%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 81 cgccggcgacctcgcgtccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 140
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 141 gctgcaggacgccttcatggccaagatccccaacgccgtgctcgggcaggggtacgggat 200
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 201 gacggaggccgggccggtgctggccatgtgcctggcgttcgccaaggagccgttcaaggt 260
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
||||||||| || || ||||| || || | ||||| | ||| |||||||||||||| ||
Sbjct: 261 caagtccgggtcgtgcggcacggtggtgcgcaacgccgggctcaagatcgtcgaccccga 320
Query: 264 caccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaat 323
|||| |||| || || || ||||||||||| |||||||| ||||||||||| || || ||
Sbjct: 321 caccggcgcctccctcggccggaaccagcccggcgagatctgcatccgcggggagcagat 380
Query: 324 catgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatg 383
|||||||||||| || || || ||| | | || ||||||||||| || ||||| || ||
Sbjct: 381 catgaaaggttaccttaacgacccaaaatccaccaagaacaccatcgacaaggatggctg 440
Query: 384 gctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacag 443
||||||||| || ||||| || ||| ||||||||||||||||||||||| ||||||||
Sbjct: 441 gctgcacaccggagacatcggcatcgtcgacgacgacgacgagatcttcattgttgacag 500
Query: 444 gctgaaggagataatcaaatacaagggcttcca 476
||| |||||||| ||||| ||||||||||||||
Sbjct: 501 gctcaaggagatcatcaagtacaagggcttcca 533
>gb|BG344702.1|BG344702 HVSMEg0015E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015E07f, mRNA sequence
Length = 875
Score = 408 bits (206), Expect = e-112
Identities = 390/449 (86%), Gaps = 2/449 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 237 cgccggcgacctcgcgtncatccgcatggtcatgtccggcgccgcgcccatgggcaagga 296
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 297 gctgcaggacgccttcatggccaagatccccaacgccgtgctcgggcaggggtacgggat 356
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 357 gacggaggccgggccggtgctggccatgtgcctggcgttcgccaaggagccgttcaaggt 416
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
||||||||| || || ||||| || || | ||||| | ||| |||||||||||||| ||
Sbjct: 417 caagtccgggtcgtgcggcacggtggtgcgcaacgccgggctcaagatcgtcgaccccga 476
Query: 264 caccagc-gcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaa 322
|||| || || || || || ||||||||||| |||||||| ||||||||||| || || |
Sbjct: 477 caccggcngcctc-ctcgggcggaaccagcccggcgagatctgcatccgcggggagcaga 535
Query: 323 tcatgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggat 382
||||||||||||| || || || ||||| | || ||||||||||| || ||||| || |
Sbjct: 536 tcatgaaaggttaccttaacgacccagaatccaccaagaacaccatcgacaaggatggct 595
Query: 383 ggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgaca 442
|||||||||| || ||||| || ||| ||||||||||||||||||||||| |||||||
Sbjct: 596 ggctgcacaccggagacatcggcatcgtcgacgacgacgacgagatcttcattgttgaca 655
Query: 443 ggctgaaggagataatcaaatacaagggc 471
|||| |||||||| ||||| |||||||||
Sbjct: 656 ggctcaaggagatcatcaagtacaagggc 684
>gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_H07 5', mRNA sequence
Length = 552
Score = 369 bits (186), Expect = e-100
Identities = 441/526 (83%)
Strand = Plus / Plus
Query: 88 caggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggatgacc 147
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6 caggacgccttcatggccaagatccccaacgccgtgctcgggcaggggtacgggatgacg 65
Query: 148 gaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaag 207
||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 66 gaggccgggccggtgctggccatgtgcctggcgttcgccaaggagccgttcaaggtcaag 125
Query: 208 tccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
||||| || || ||||| || || | ||||| | ||| |||||||||||||| ||||||
Sbjct: 126 tccgggtcgtgcggcacggtggtgcgcaacgccgggctcaagatcgtcgaccccgacacc 185
Query: 268 agcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaatcatg 327
|||| || || || ||||||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 186 ggcgcctccctcggccggaaccagcccggcgagatctgcatccgcggggagcagatcatg 245
Query: 328 aaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatggctg 387
|||||||| || || || ||||| | || ||||||||||| || ||||| || ||||||
Sbjct: 246 aaaggttaccttaacgacccagaatccaccaagaacaccatcgacaaggatggctggctg 305
Query: 388 cacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctg 447
||||| || ||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct: 306 cacaccggagacatcggcatcgtcgacgacgacgacgagatcttcattgttgacaggctc 365
Query: 448 aaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttctc 507
|||||||| ||||| |||||||||||||| || | || || ||||| || ||||| |||
Sbjct: 366 aaggagatcatcaagtacaagggcttccaggtggcgccggcagagctcgaggccctcctc 425
Query: 508 atcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaagtcgccggc 567
||||| || || || |||||||| ||||| || || ||| |||| || || | || |||
Sbjct: 426 atcacccacccggagatcaaggacgccgccgtcgtatcgctgaaggacgatcttgctggc 485
Query: 568 gaagtcccggtggcattcattatacgcagtgaaggctctgagatca 613
||||||||| | || ||| |||| || | ||||||||||| ||||
Sbjct: 486 gaagtcccgatcgccttcgttatgcggatcgaaggctctgaaatca 531
>gb|BF253382.2|BF253382 HVSMEf0001A07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A07f, mRNA sequence
Length = 864
Score = 363 bits (183), Expect = 8e-099
Identities = 331/379 (87%), Gaps = 1/379 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 180
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 240
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 241 gacggaggccgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcgccgt 300
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
|||||| || ||||| ||||| || || ||||||||||||| ||||||| | |||| ||
Sbjct: 301 caagtcggggtcctgcggcacggtggtgcggaacgcggagctcaagatcgacaaccccga 360
Query: 264 caccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaat 323
|||| |||| | || | || |||| ||| || ||||| |||||||||||| | || ||
Sbjct: 361 caccggcgcctacctcgcccgcaacctgcccggggagatctgcatccgcggcaagcagat 420
Query: 324 catgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacgg-at 382
|||||||||||| || |||||| ||||| ||||||||||||||||| ||||| || |
Sbjct: 421 catgaaaggttacctatgtgatccggaggccacaaagaacaccattgacaaggatggttt 480
Query: 383 ggctgcacactggggacat 401
|| |||||||||| |||||
Sbjct: 481 ggttgcacactggagacat 499
>gb|CK123691.1|CK123691 BES1824105b17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B175 5-PRIME, mRNA sequence
Length = 801
Score = 363 bits (183), Expect = 8e-099
Identities = 304/343 (88%), Gaps = 1/343 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 427 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 486
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 546
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 547 gacggaggccgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcgccgt 606
Query: 204 caagtccggctcctgtggcac-cgtcgtcaggaacgcggagctgaagatcgtcgacccag 262
|||||| || ||||| ||||| || || ||||||||||||| |||||||||||||| |
Sbjct: 607 caagtcggggtcctgcggcacgggtggtgcggaacgcggagctcaagatcgtcgaccccg 666
Query: 263 acaccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaa 322
||||| |||| || || | || ||| ||| || ||||| |||||||||||| | || |
Sbjct: 667 acaccggcgcctccctcgcccgcaactggcctggggagatctgcatccgcggcaagcaga 726
Query: 323 tcatgaaaggttatctgaatgatccagaggcgacaaagaacac 365
||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 727 tcatgaaaggttacctaaatgatccggaggccacaaagaacac 769
>gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_M23 5', mRNA sequence
Length = 590
Score = 329 bits (166), Expect = 1e-088
Identities = 472/574 (82%)
Strand = Plus / Plus
Query: 113 ccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctggccatgt 172
|||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 1 ccaacgccgtgctcgggcaggggtacgggatgacggaggccgggccggtgctggccatgt 60
Query: 173 gcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcaccgtcgtca 232
||||||| |||||||||||||||||| ||||||||||||| || || ||||| || ||
Sbjct: 61 gcctggcgttcgccaaggagccgttcaaggtcaagtccgggtcgtgcggcacggtggtgc 120
Query: 233 ggaacgcggagctgaagatcgtcgacccagacaccagcgcgtcgctgggacggaaccagc 292
| ||||| | ||| |||||||||||||| |||||| |||| || || || ||||||||||
Sbjct: 121 gcaacgccgggctcaagatcgtcgaccccgacaccggcgcctccctcggccggaaccagc 180
Query: 293 caggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatgatccagagg 352
| |||||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 181 ccggcgagatctgcatccgcggggagcagatcatgaaaggttaccttaacgacccagaat 240
Query: 353 cgacaaagaacaccattgataaggacggatggctgcacactggggacattggttacgtgg 412
| || ||||||||||| || ||||| || ||||||||||| || ||||| || ||| |
Sbjct: 241 ccaccaagaacaccatcgacaaggatggctggctgcacaccggagacatcggcatcgtcg 300
Query: 413 acgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggct 472
|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 301 acgacgacgacgagatcttcattgttgacaggctcaaggagatcatcaagtacaagggct 360
Query: 473 tccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaaggatg 532
|||| || | || || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 361 tccaggtggcgccggcagagctcgaggccctcctcatcacccacccggagatcaaggacg 420
Query: 533 ccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattcattatac 592
|||| || || ||| |||| || || | || |||||||||||| | || ||| |||| |
Sbjct: 421 ccgccgtcgtatcgctgaaggacgatcttgctggcgaagtcccgatcgccttcgttatgc 480
Query: 593 gcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgcaaaggaggtcg 652
| | ||||||||||| |||| ||| | || ||||| | || || || ||||||| |
Sbjct: 481 ggatcgaaggctctgaaatcaccgaggatgacatcaaaaaattcgtcgcgaaggagggtg 540
Query: 653 tgttctacaagaggatcaacagagttttcttcac 686
| ||||||||||||||| ||| || ||||||||
Sbjct: 541 ttttctacaagaggatccacaaggtcttcttcac 574
>gb|BE193837.3|BE193837 HVSMEh0082K14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0082K14f, mRNA sequence
Length = 803
Score = 325 bits (164), Expect = 2e-087
Identities = 275/312 (88%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 cgccggcgacctcgcgtccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 60
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 gctgcaggacgccttcatggccaagatccccaacgccgtgctcgggcaggggtacgggat 120
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 121 gacggaggccgggccggtgctggccatgtgcctggcgttcgccaaggagccgttcaaggt 180
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
||||||||| || || ||||| || || | ||||| | ||| |||||||| ||||| ||
Sbjct: 181 caagtccgggtcgtgcggcacggtggtgcgcaacgccgggctcaagatcgtagaccccga 240
Query: 264 caccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaat 323
|||| |||| | || || |||||||| || |||||||| |||||||| || || |||||
Sbjct: 241 caccggcgccttcctcgggcggaaccaacccggcgagatctgcatccgtggggagcaaat 300
Query: 324 catgaaaggtta 335
||||||||||||
Sbjct: 301 catgaaaggtta 312
>gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L15
3-PRIME, mRNA sequence
Length = 490
Score = 299 bits (151), Expect = 1e-079
Identities = 304/355 (85%)
Strand = Plus / Plus
Query: 386 tgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggc 445
|||||||||| ||||| ||||| || || || || ||||||||||||||||| |||||||
Sbjct: 17 tgcacactggagacatcggttatgtcgatgatgatgacgagatcttcatcgtcgacaggc 76
Query: 446 tgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttc 505
| || |||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 77 tcaaagagataatcaaatacaagggattccaagtacctcctgcggaactcgaagcccttc 136
Query: 506 tcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaagtcgccg 565
|||| ||||| |||||||||| ||||| |||||||| |||||| |||||||| | | |
Sbjct: 137 tcattacacacgctgaaatcaaagatgctgctgttgtatcgatgcaagatgaacttactg 196
Query: 566 gcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgagaacgaga 625
| ||||| || || ||||||||| | || | |||||||||||||||||| |||| |||||
Sbjct: 197 gtgaagtaccagttgcattcattgtgcggattgaaggctctgagatcagcgagagcgaga 256
Query: 626 tcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagttttcttca 685
||||||||||||||||||| ||||| || |||||||| |||||| ||| |||||||||
Sbjct: 257 tcaagcagtttgttgcaaaagaggttgttttctacaaaaggatccacaaagttttctttg 316
Query: 686 cggattctatcccgaagaatccctccggcaagattcttaggaaggacctgagagc 740
|||| || | ||||||| ||| |||||||||| || |||||||||||||||||
Sbjct: 317 cggactcggttccgaagagtcctgccggcaagatcctcaggaaggacctgagagc 371
>gb|BI959998.1|BI959998 HVSMEn0022N01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022N01f, mRNA sequence
Length = 629
Score = 293 bits (148), Expect = 6e-078
Identities = 269/308 (87%), Gaps = 1/308 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 246 cgccggcgacctcgcgtccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 305
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 306 gctgcaggacgccttcatggccaagatccccaacgccgtgctcgggcaggggtacgggat 365
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggt 203
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 366 gacggaggccgggccggtgctggccatgtgcctggcgttcgccaaggagccgttcaaggt 425
Query: 204 caagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccaga 263
||||||||| || || ||||| || || | ||||| ||| |||||||||||||| ||
Sbjct: 426 caagtccgggtcgtgcggcacggtggtgcgcaacgcccggctcaagatcgtcgaccccga 485
Query: 264 caccagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaa- 322
|||| |||| | || | | |||||| || |||||||| ||||||||||| || ||||
Sbjct: 486 caccggcgccttcctccgcccgaaccaccccggcgagatctgcatccgcggggagcaaac 545
Query: 323 tcatgaaa 330
||||||||
Sbjct: 546 tcatgaaa 553
>gb|BE411374.1|BE411374 ISC004.H10F990609 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC004.H10, mRNA sequence
Length = 492
Score = 285 bits (144), Expect = 2e-075
Identities = 168/176 (95%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 162 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 221
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 222 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 281
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcg 199
||| ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct: 282 gacggaggccgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcg 337
>gb|BE411643.1|BE411643 ISC007.G04F990714 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC007.G04, mRNA sequence
Length = 494
Score = 270 bits (136), Expect = 9e-071
Identities = 167/176 (94%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 160 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 219
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 220 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 279
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcg 199
||| ||||| ||||| |||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 280 gacggaggccgggccggtgctgtccatgtgcctggcgttcg-caaggagccgttcg 334
>gb|CA012845.1|CA012845 HT06J23r HT Hordeum vulgare subsp. vulgare cDNA clone HT06J23
5-PRIME, mRNA sequence
Length = 684
Score = 256 bits (129), Expect = 1e-066
Identities = 153/161 (95%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 524 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaagga 583
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 584 cctccaggacgccttcatggccaagatccccaacgccgtgctcggacaggggtacgggat 643
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctggccttcg 184
||| ||||| ||||| |||||| ||||||||||||| ||||
Sbjct: 644 gacggaggccgggccggtgctgtccatgtgcctggcgttcg 684
>gb|BF260187.2|BF260187 HVSMEf0021F10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021F10f, mRNA sequence
Length = 859
Score = 226 bits (114), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 30 cgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaaggacctcca 89
|||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 133 cgaccttgccttcattcgcatggtcatgtccggcgccgcgcccatgggcaaggaccttca 192
Query: 90 ggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggatgaccga 149
|||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 193 ggacgccttcatgggcaagatccccaacgccgtgcttggacaggggtacgggatgacgga 252
Query: 150 ggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaagtc 209
|| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 253 gggcgggccggtgctgtccatgtgcctggcgttcgccaaggagccgttcggcgtccagtc 312
Query: 210 cggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| ||||| ||||| | || |||||||||| || || ||||| ||||| ||||||
Sbjct: 313 ggggtcctgcggcacgggggtgcggaacgcggatcttaaaatcgttgaccccgacacc 370
>gb|BI958356.1|BI958356 HVSMEn0014I24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014I24f, mRNA sequence
Length = 666
Score = 204 bits (103), Expect = 4e-051
Identities = 142/155 (91%)
Strand = Plus / Plus
Query: 24 cgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaagga 83
||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 487 cgccggcgacctcgcgtgcatccgcatggtcatgtccggcgccgcgcccatgggcaagga 546
Query: 84 cctccaggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggat 143
|| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 547 gctgcaggacgccttcatggccaagatccccaacgccgtgctcgggcaggggttcgggat 606
Query: 144 gaccgaggcggggcccgtgctggccatgtgcctgg 178
||| || || ||||| |||||||||||||||||||
Sbjct: 607 gactgaagccgggccggtgctggccatgtgcctgg 641
>gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001H21f, mRNA sequence
Length = 922
Score = 141 bits (71), Expect = 6e-032
Identities = 332/419 (79%)
Strand = Plus / Plus
Query: 322 atcatgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacgga 381
|||||||||||||| || || || ||||| | || ||||||||||| || ||||| ||
Sbjct: 46 atcatgaaaggttaccttaacgacccagaatccaccaagaacaccatcgacaaggatggc 105
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || ||||| || ||| ||||||||||||||||||||||| ||||||
Sbjct: 106 tggctgcacaccggagacatcggcatcgtcgacgacgacgacgagatcttcattgttgac 165
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcc 501
||||| |||||||| || || |||||||||||||| || | || || ||||| || |||
Sbjct: 166 aggctcaaggagatcatgaagtacaagggcttccaggtggcgccggcagagctcgaggcc 225
Query: 502 cttctcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaagtc 561
|| |||||||| || || || |||||||| ||||| || || ||| |||| || || |
Sbjct: 226 ctcctcatcacccacccggagatcaaggacgccgccgtcgtatcgctgaaggacgatctt 285
Query: 562 gccggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgagaac 621
|| |||||||||||| | || ||| |||| || | ||||||||||| |||| ||| |
Sbjct: 286 gctggcgaagtcccgatcgccttcgttatgcggatcgaaggctctgaaatcaccgaggat 345
Query: 622 gagatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagttttc 681
|| ||||| | || || || |||||||| | ||||||||||||||| ||| || |||
Sbjct: 346 gacatcaaaaaattcgtcgcgaaggaggttggtttctacaagaggatccacaaggtcttc 405
Query: 682 ttcacggattctatcccgaagaatccctccggcaagattcttaggaaggacctgagagc 740
||||| || || || || ||||| || || ||| |||| || ||||||||| |||||||
Sbjct: 406 ttcaccgactcaatgcccaagaacccttcaggcgagatcctgaggaaggacttgagagc 464
>gb|BE215262.2|BE215262 HV_CEb0006F04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006F04f, mRNA sequence
Length = 476
Score = 141 bits (71), Expect = 6e-032
Identities = 191/231 (82%)
Strand = Plus / Plus
Query: 30 cgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatggggaaggacctcca 89
||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct: 242 cgacctctcctccgtccgcatggtcatctccggcgccgcgcccatgggcaaggagctgca 301
Query: 90 ggacgcgttcatggccaagatccccaacgccgtgctcggccaggggtacgggatgaccga 149
|||| || |||||| ||||||| ||||||||||| ||||| || |||||||| ||
Sbjct: 302 ggacatcatccacgccaagctccccaatgccgtgctcggacagggctatgggatgacaga 361
Query: 150 ggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaagtc 209
||| || || |||||| | |||||| |||| |||||||| ||||||| ||| |||||
Sbjct: 362 ggcaggtccggtgctgtcgatgtgcatggcgttcgccaaagagccgtcgccggtgaagtc 421
Query: 210 cggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgaccc 260
||| | || ||||| || || |||||||||||||| ||||||||||||||
Sbjct: 422 aggcgcatgcggcacggtggtaaggaacgcggagctcaagatcgtcgaccc 472
>gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021P10f, mRNA sequence
Length = 657
Score = 133 bits (67), Expect = 1e-029
Identities = 280/351 (79%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 412 gacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggc 471
||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 649 gacgacgacgacgagatcttcattgttgacaggctcaaggagatcatcaagtacaagggc 590
Query: 472 ttccaagtacctcctgcggagcttgaagccct-tctcatcacacatcctgaaatcaagga 530
||||| || | || || ||||| || ||| | ||||||| || || || ||||||||
Sbjct: 589 ttccaggtggcgccggcagagctngaggccntcnntcatcacccacccggagatcaagga 530
Query: 531 tgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattcattat 590
||||| || || ||| |||| || || | || |||||||||||| | || ||| ||||
Sbjct: 529 cgccgccgtcgtatcgctgaaggacgatcttgctggcgaagtcccgatcgccttcgttat 470
Query: 591 acgcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgcaaaggaggt 650
|| | ||||||||||| |||| ||| | || ||||| | || || || ||||||||
Sbjct: 469 gcggatcgaaggctctgaaatcaccgaggatgacatcaaaaaattcgtcgcgaaggaggt 410
Query: 651 cgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatccctc 710
|| ||||||||||||||| ||| || |||||||| || || ||||| ||||| || ||
Sbjct: 409 tgttttctacaagaggatccacaaggtcttcttcaccgactcaatccccaagaacccttc 350
Query: 711 cggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatccc 761
|||||||| || ||||||||| ||||||| |||| ||||| ||||||||
Sbjct: 349 aggcaagatcctgaggaaggacttgagagccaggctcgccgctggcatccc 299
>gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8m01, mRNA sequence
Length = 599
Score = 111 bits (56), Expect = 5e-023
Identities = 281/353 (79%), Gaps = 3/353 (0%)
Strand = Plus / Plus
Query: 412 gacgacgacgacgag-atcttcatcgttgacaggctgaaggagataatcaaatacaaggg 470
||||||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 54 gacgacgacgacgagnatcttcattgttgacaggctcaaggagatcatcaagtacaaggg 113
Query: 471 cttccaagtacctcctgc-ggagcttgaagcccttctcatcacacatcctga-aatcaag 528
|||||| || | || || | |||| || ||||| |||||||| || || | ||||||
Sbjct: 114 cttccaggtggcgccggcagnagctcgaggccctcctcatcacccacccggngnatcaag 173
Query: 529 gatgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattcatt 588
|| ||||| || || ||| |||| || || | || |||||||||||| | || ||| ||
Sbjct: 174 gacgccgccgtcgtatcgctgaaggacgatcttgctggcgaagtcccgatcgccttcgtt 233
Query: 589 atacgcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgcaaaggag 648
|| || | ||||||||||| |||| ||| | || ||||| | || || || ||||||
Sbjct: 234 atgcggatcgaaggctctgaaatcaccgaggatgacatcaaaaaattcgtcgcgaaggag 293
Query: 649 gtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatccc 708
|| || ||||||||||||||| ||| || |||||||| || || ||||| ||||| ||
Sbjct: 294 gttgttttctacaagaggatccacaaggtcttcttcaccgactcaatccccaagaaccct 353
Query: 709 tccggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatccc 761
|| |||||||| || ||||||||| ||||||| |||| ||||| ||||||||
Sbjct: 354 tcaggcaagatcctgaggaaggacttgagagccaggctcgccgctggcatccc 406
>gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21u 3',
mRNA sequence
Length = 508
Score = 85.7 bits (43), Expect = 3e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 125 tcggccaggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcg 184
|||| ||||||||||||||||| ||||||||||| |||||| ||||||||| ||| ||||
Sbjct: 35 tcggacaggggtacgggatgacggaggcggggccggtgctgtccatgtgcccggcgttcg 94
Query: 185 ccaaggagccg 195
||| |||||||
Sbjct: 95 ccagggagccg 105
Score = 61.9 bits (31), Expect = 4e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| ||||| || ||||| || ||||| ||||||||||||||| |||||||||| |||
Sbjct: 292 tggctccacaccggcgacatcggctacgtcgacgacgacgacgaggtcttcatcgtcgac 351
Query: 442 aggctgaaggagataatcaaatacaagggcttcca 476
| | |||||| | ||||| | ||||||||||||
Sbjct: 352 cgcgtcaaggagctcatcaagttcaagggcttcca 386
>gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K1510 5-PRIME, mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 4e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||| ||||| || ||||| || ||||| ||||||||||||||| |||||||||| |||
Sbjct: 241 tggctccacaccggcgacatcggctacgtcgacgacgacgacgaggtcttcatcgtcgac 300
Query: 442 aggctgaaggagataatcaaatacaagggcttcca 476
| | |||||| | ||||| | ||||||||||||
Sbjct: 301 cgcgtcaaggagctcatcaagttcaagggcttcca 335
>gb|CA024506.1|CA024506 HZ49H23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49H23
5-PRIME, mRNA sequence
Length = 548
Score = 42.1 bits (21), Expect = 0.038
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 ctccaggacgcgttcatggccaaga 109
|||||||||||| ||||||||||||
Sbjct: 130 ctccaggacgcgctcatggccaaga 154
>gb|CA027848.1|CA027848 HZ60D14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60D14
5-PRIME, mRNA sequence
Length = 259
Score = 42.1 bits (21), Expect = 0.038
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 ctccaggacgcgttcatggccaaga 109
|||||||||||| ||||||||||||
Sbjct: 130 ctccaggacgcgctcatggccaaga 154
>gb|BI948310.1|BI948310 HVSMEl0008P24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008P24f, mRNA sequence
Length = 1143
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 407 acgtggacgacgacgacgag 426
||||||||||||||||||||
Sbjct: 457 acgtggacgacgacgacgag 438
>gb|BQ763531.1|BQ763531 EBro02_SQ008_J16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J16 5', mRNA sequence
Length = 479
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 407 acgtggacgacgacgacgag 426
||||||||||||||||||||
Sbjct: 470 acgtggacgacgacgacgag 451
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,014
Number of Sequences: 312970
Number of extensions: 128014
Number of successful extensions: 37605
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37533
Number of HSP's gapped (non-prelim): 49
length of query: 1093
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1074
effective length of database: 169,188,109
effective search space: 181708029066
effective search space used: 181708029066
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)