BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 557 e-157
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 402 e-110
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 402 e-110
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 387 e-106
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 357 5e-097
gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachi... 188 3e-046
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 109 2e-022
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 52 4e-005
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 52 4e-005
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 52 4e-005
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 50 2e-004
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 50 2e-004
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 50 2e-004
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 50 2e-004
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 50 2e-004
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 50 2e-004
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 50 2e-004
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 50 2e-004
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 50 2e-004
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 50 2e-004
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 50 2e-004
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 50 2e-004
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 50 2e-004
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 50 2e-004
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 46 0.003
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 46 0.003
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 46 0.003
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 46 0.003
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 46 0.003
gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. v... 46 0.003
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 42 0.041
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 42 0.041
gb|BU994984.1|BU994984 HM08N09r HM Hordeum vulgare subsp. v... 40 0.16
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 557 bits (281), Expect = e-157
Identities = 449/505 (88%)
Strand = Plus / Minus
Query: 482 ctggccccagttgcggcccatcgggagccatcccaactctgttcctttaatcttcacaga 541
|||||||||||| |||||||| |||||| || | ||||||||||| |||||| ||
Sbjct: 507 ctggccccagttacggcccatgtagagccagccagagtctgttcctttgatcttcctgga 448
Query: 542 tctaacatcacccgcgccaccaacgttgctgattaggactgtaaagaagaagtgccgacc 601
||| |||||||| |||||||| || ||||||||||||||||| ||||||||| | ||
Sbjct: 447 tctgacatcaccagcgccaccgacattgctgattaggactgtgaagaagaagctcttccc 388
Query: 602 gttgacagagaacctgacaccaccttcacggaggcacttaacacggcggtactggattgg 661
||| ||||||| || || ||||| || |||||||| || |||||||||||||| ||
Sbjct: 387 agagactgagaaccgcacgccgccttcgcgaaggcacttgacgcggcggtactggatggg 328
Query: 662 catgatgccggccttccagagcgcaatcttctcaaacgactggatggggaggaggaaatg 721
||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct: 327 catgacgccggccttccagagcgcaatcttctcgaacgcctggatgggcaggaggaagtg 268
Query: 722 atggttgggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgca 781
|||||||||||||||||| |||||||||||||||||| | ||||||||| || | |||
Sbjct: 267 gtggttgggcgggttgcagacgccgccggcgtcggcggggaagccgtagttgggcgggca 208
Query: 782 gaagttggtggccgtgacgactatggaggtgccggggaggcagtacttgagatcctcgac 841
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 207 gaagttggtggccgtgacgacgatggaggtgccggggaggcagtacttgaggtcctccac 148
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 147 gcacttgacctcgtagcagccgccgcaggcggcgccgcgctcgaacagcgccgtgctcag 88
Query: 902 ccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgccccacc 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 87 ccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgcgccacc 28
Query: 962 gatggcgtcttcggggtcggcggcg 986
||||||||| ||||||||||||||
Sbjct: 27 gatggcgtcgccggggtcggcggcg 3
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 402 bits (203), Expect = e-110
Identities = 353/403 (87%)
Strand = Plus / Minus
Query: 466 agttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttc 525
||||||||||||| | ||||||||||||||||||||| |||||| || | |||||||
Sbjct: 405 agttgatgtgccatatctggccccagttgcggcccatgtcgagccagccagagtctgttc 346
Query: 526 ctttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaa 585
|||| |||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct: 345 ctttgatcttcactgatctgacatcaccagcgccaccgacattgctgattaggactgtga 286
Query: 586 agaagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacac 645
|||||||| | || ||| ||||||| || || ||||| || |||||||| || |
Sbjct: 285 agaagaagctcttcccagagactgagaaccgcacgccgccttcgcgaaggcacttgacgc 226
Query: 646 ggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgga 705
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct: 225 ggcggtactggatgggcatgacgccggccttccagagcgcaatcttctcgaacgcctgga 166
Query: 706 tggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggc 765
|||| |||||||| || |||||||||||||||||| |||||||||||||||||| | ||
Sbjct: 165 tgggcaggaggaagtggtggttgggcgggttgcagacgccgccggcgtcggcggggaagc 106
Query: 766 cgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagt 825
||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 105 cgtagttgggcgggcagaagttggtggccgtgacgacgatggaggtgccggggaggcagt 46
Query: 826 acttgagatcctcgacgcacttgacctcgtagcagccgccgca 868
||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 45 acttgaggtcctccacgcacttgacctcgtagcagccgccgca 3
Score = 75.8 bits (38), Expect = 3e-012
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 334 tctacagaagaaattgcttccccgtgtatgtcttgccatactcccaatccttagggacga 393
|||| ||||| || ||||| || |||||||| |||||| ||||||||||||| || ||||
Sbjct: 537 tctagagaaggaactgcttgccggtgtatgttttgccaaactcccaatccttgggcacga 478
Query: 394 cgttgaaactggtcagcgccttgccatcgctcgagctgagctcaaa 439
|||| ||| | |||| || | ||||||| |||||| ||||||||||
Sbjct: 477 cgttaaaattcgtcatcgtcgtgccatcactcgaggtgagctcaaa 432
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 402 bits (203), Expect = e-110
Identities = 353/403 (87%)
Strand = Plus / Minus
Query: 466 agttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttc 525
||||||||||||| | ||||||||||||||||||||| |||||| || | |||||||
Sbjct: 405 agttgatgtgccatatctggccccagttgcggcccatgtcgagccagccagagtctgttc 346
Query: 526 ctttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaa 585
|||| |||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct: 345 ctttgatcttcactgatctgacatcaccagcgccaccgacattgctgattaggactgtga 286
Query: 586 agaagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacac 645
|||||||| | || ||| ||||||| || || ||||| || |||||||| || |
Sbjct: 285 agaagaagctcttcccagagactgagaaccgcacgccgccttcgcgaaggcacttgacgc 226
Query: 646 ggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgga 705
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct: 225 ggcggtactggatgggcatgacgccggccttccagagcgcaatcttctcgaacgcctgga 166
Query: 706 tggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggc 765
|||| |||||||| || |||||||||||||||||| |||||||||||||||||| | ||
Sbjct: 165 tgggcaggaggaagtggtggttgggcgggttgcagacgccgccggcgtcggcggggaagc 106
Query: 766 cgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagt 825
||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 105 cgtagttgggcgggcagaagttggtggccgtgacgacgatggaggtgccggggaggcagt 46
Query: 826 acttgagatcctcgacgcacttgacctcgtagcagccgccgca 868
||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 45 acttgaggtcctccacgcacttgacctcgtagcagccgccgca 3
Score = 75.8 bits (38), Expect = 3e-012
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 334 tctacagaagaaattgcttccccgtgtatgtcttgccatactcccaatccttagggacga 393
|||| ||||| || ||||| || |||||||| |||||| ||||||||||||| || ||||
Sbjct: 537 tctagagaaggaactgcttgccggtgtatgttttgccaaactcccaatccttgggcacga 478
Query: 394 cgttgaaactggtcagcgccttgccatcgctcgagctgagctcaaa 439
|||| ||| | |||| || | ||||||| |||||| ||||||||||
Sbjct: 477 cgttaaaattcgtcatcgtcgtgccatcactcgaggtgagctcaaa 432
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 387 bits (195), Expect = e-106
Identities = 351/403 (87%)
Strand = Plus / Minus
Query: 466 agttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttc 525
||||||||||||| | ||||||||||||||||||||| |||||| || | |||||||
Sbjct: 405 agttgatgtgccatatctggccccagttgcggcccatgtcgagccagccagagtctgttc 346
Query: 526 ctttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaa 585
|||| |||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct: 345 ctttgatcttcactgatctgacatcaccagcgccaccgacattgctgattaggactgtga 286
Query: 586 agaagaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacac 645
|||||||| | || ||| ||||||| || || ||||| || |||||||| || |
Sbjct: 285 agaagaagctcttcccagagactgagaaccgcacgccgccttcgcgaaggcacttgacgc 226
Query: 646 ggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgga 705
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct: 225 ggcggtactggatgggcatgacgccggccttccagagcgcaatcttctcgaacgcctgga 166
Query: 706 tggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggc 765
|||| |||||||| || |||||||||||||||||| |||||||||||||||||| | ||
Sbjct: 165 tgggcaggaggaagtggtggttgggcgggttgcagacgccgccggcgtcggcggggaagc 106
Query: 766 cgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagt 825
||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 105 cgtagttgggcgggcagaagttggtggccgtgacgacgatggaggtgccggggaggcagt 46
Query: 826 acttgagatcctcgacgcacttgacctcgtagcagccgccgca 868
||||||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 45 acttgaggtcctccacgcacttgaccgcgtatcagccgccgca 3
Score = 69.9 bits (35), Expect = 2e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 357 gtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtcagcgccttg 416
|||||||| |||||| ||||||||||||| || |||||||| ||| | |||| || | ||
Sbjct: 514 gtgtatgttttgccaaactcccaatccttgggcacgacgttaaaattcgtcatcgtcgtg 455
Query: 417 ccatcgctcgagctgagctcaaa 439
||||| |||||| ||||||||||
Sbjct: 454 ccatcactcgaggtgagctcaaa 432
>gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0025O13f,
mRNA sequence
Length = 669
Score = 357 bits (180), Expect = 5e-097
Identities = 370/432 (85%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 633 aggcacttaacacggcggtactggattggcatgatgccggccttccagagcgcaatcttc 692
|||||||| || || ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 577 aggcacttgacgcgccggtactggatgggcatgacgccggccttccagagcgcaatcttc 518
Query: 693 tcaaacgactggatggggaggaggaaatgatggttgggcgggttgcagtggccgccggcg 752
|| |||| ||| ||||| ||||| || || ||||||||||||||||| ||||| ||||
Sbjct: 517 tcgaacgcctgcatgggcaggagaaagtggtggttgggcgggttgcacacgccgcaggcg 458
Query: 753 tcggcgggaaggccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtg 812
|||||||| | ||||||||| || | |||||| |||||| |||| | ||| ||||||||
Sbjct: 457 tcggcggggaagccgtagttgggcgggcagaacttggtgcccgtcatgaccatggaggtc 398
Query: 813 ccggggaggcagtacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgcc 872
||||| || |||| ||| || || || ||||| ||||||||||||||||||| ||| |
Sbjct: 397 ccgggcagccagtgcttcaggtcatccacgcagttgacctcgtagcagccgcggcaggag 338
Query: 873 gcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttc 932
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcgccgcgatagatcagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttc 278
Query: 933 cccagatccccgaacccgcacgccccaccgatggcgtcttcggggtcggcggcgtagtag 992
|||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 277 cccagatcccagaacccgcacgcgccaccgatggcgtcgccggggtcggcggcgaagtag 218
Query: 993 gatgccatgaacggggcgccactcggaaagcgcggaggagccgtaggaggacgggtgctg 1052
| | | || || |||||| ||||| |||||| |||| ||||||||||| ||||||||
Sbjct: 217 taggacttg-gcgttgcgccattcggagagcgcgcaggacccgtaggaggaggggtgctg 159
Query: 1053 gtgtccggcggc 1064
||| ||| ||||
Sbjct: 158 gtggccgacggc 147
>gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0007F13f,
mRNA sequence
Length = 619
Score = 188 bits (95), Expect = 3e-046
Identities = 148/165 (89%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 900 agccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgcccca 959
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 310 agccccacngtcgccatcccgtacccgtgcttccccagatcccngaacccgcacgcgcca 251
Query: 960 ccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgga 1019
||||||||||| |||||||||||||| ||||||| | | || || |||||| |||||
Sbjct: 250 ccgatggcgtcgccggggtcggcggcgaagtaggaggacttg-gcgttgcgccattcgga 192
Query: 1020 aagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 191 gagcgcggaggagccgtaggaggaggggtgctggtggccggcggc 147
>gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A18
5-PRIME, mRNA sequence
Length = 535
Score = 109 bits (55), Expect = 2e-022
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 466 agttgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttc 525
||||||||||||| | ||||||||||||||||||||| |||||| || | |||||||
Sbjct: 421 agttgatgtgccatatctggccccagttgcggcccatgtcgagccagccagagtctgttc 480
Query: 526 ctttaatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggac 580
|||| |||||||| ||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 481 ctttgatcttcactgatctgacatcaccagcgccaccgacattgctgattaggac 535
Score = 75.8 bits (38), Expect = 3e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 334 tctacagaagaaattgcttccccgtgtatgtcttgccatactcccaatccttagggacga 393
|||| ||||| || ||||| || |||||||| |||||| ||||||||||||| || ||||
Sbjct: 289 tctagagaaggaactgcttgccggtgtatgttttgccaaactcccaatccttgggcacga 348
Query: 394 cgttgaaactggtcagcgccttgccatcgctcgagctgagctcaaa 439
|||| ||| | |||| || | ||||||| |||||| ||||||||||
Sbjct: 349 cgttaaaattcgtcatcgtcgtgccatcactcgaggtgagctcaaa 394
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gaatgatacatcaagcctct 138
||||||||||||||||||||
Sbjct: 15 gaatgatacatcaagcctct 34
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 52.0 bits (26), Expect = 4e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 335 gcacttgagctcgtagcangacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 276
Query: 902 c 902
|
Sbjct: 275 c 275
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 52.0 bits (26), Expect = 4e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| || |||||| | ||||||||||||||| | ||||||||||||||||||
Sbjct: 187 gcacttgagctngtagcaccacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 128
Query: 902 c 902
|
Sbjct: 127 c 127
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 743 gccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttggtggccgtgacgac 802
||||||| |||||| ||| || ||||||| || | ||||||||||||||| ||||||||
Sbjct: 462 gccgccgtcgtcggaggggagcgcgtagttgggcgggcagaagttggtggcggtgacgac 403
Query: 803 tatgga 808
|||||
Sbjct: 402 gatgga 397
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 225 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 166
Query: 902 c 902
|
Sbjct: 165 c 165
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 300 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 241
Query: 902 c 902
|
Sbjct: 240 c 240
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 466 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 407
Query: 789 gtggc 793
|||||
Sbjct: 406 gtggc 402
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 334 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 296
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 466 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 407
Query: 789 gtggc 793
|||||
Sbjct: 406 gtggc 402
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 334 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 296
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 330 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 271
Query: 902 c 902
|
Sbjct: 270 c 270
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 190 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 131
Query: 789 gtggc 793
|||||
Sbjct: 130 gtggc 126
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 58 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 20
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 349 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 290
Query: 902 c 902
|
Sbjct: 289 c 289
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 323 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 264
Query: 902 c 902
|
Sbjct: 263 c 263
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 87 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 28
Query: 902 c 902
|
Sbjct: 27 c 27
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 327 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 268
Query: 902 c 902
|
Sbjct: 267 c 267
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 301 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 242
Query: 902 c 902
|
Sbjct: 241 c 241
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 248 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 189
Query: 789 gtggc 793
|||||
Sbjct: 188 gtggc 184
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 116 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 78
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 167 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 108
Query: 902 c 902
|
Sbjct: 107 c 107
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 338 gcacttgagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcag 279
Query: 902 c 902
|
Sbjct: 278 c 278
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 445 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 386
Query: 789 gtggc 793
|||||
Sbjct: 385 gtggc 381
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 313 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 275
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 306 ccgcacgccgcgccgttgttgaacagcgccgtgctcagc 268
>gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K11f, mRNA sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 336 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 298
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 84 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 46
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 334 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 296
>gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C21 5', mRNA sequence
Length = 413
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 766 cgtagttcggggcgcagaagttggtggccgtgacg 800
||||||| || | ||||||||||||||||||||||
Sbjct: 395 cgtagttgggcgggcagaagttggtggccgtgacg 361
>gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS08C15
5-PRIME, mRNA sequence
Length = 364
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 864 ccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
||||||||||||||| | |||||||||||||||||||
Sbjct: 346 ccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 308
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 42.1 bits (21), Expect = 0.041
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 842 gcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcag 901
|||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||
Sbjct: 353 gcacttgagctcgtagcacgacccgcacgccgcgctgtcgttgaacagcgccgtgctcag 294
Query: 902 c 902
|
Sbjct: 293 c 293
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 766 cgtagttcggggcgcagaagttggtggccgtga 798
||||||| || | ||||||||||||||||||||
Sbjct: 360 cgtagttgggcgggcagaagttggtggccgtga 328
>gb|BU994984.1|BU994984 HM08N09r HM Hordeum vulgare subsp. vulgare cDNA clone HM08N09
5-PRIME, mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 734 gttgcagtggccgccggcgt 753
||||||||||||||||||||
Sbjct: 45 gttgcagtggccgccggcgt 26
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,518
Number of Sequences: 312970
Number of extensions: 138518
Number of successful extensions: 41811
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41735
Number of HSP's gapped (non-prelim): 71
length of query: 1171
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1152
effective length of database: 169,188,109
effective search space: 194904701568
effective search space used: 194904701568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)