BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA li... 658 0.0
gb|CV054787.1|CV054787 BNEL113c8 Barley EST endosperm libra... 525 e-147
gb|CA014678.1|CA014678 HT12A16r HT Hordeum vulgare subsp. v... 410 e-113
gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA li... 402 e-110
gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm librar... 391 e-107
gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike... 371 e-101
gb|BI957363.1|BI957363 HVSMEn0009C19f Hordeum vulgare rachi... 343 9e-093
gb|CV061394.1|CV061394 BNEL68d1 Barley EST endosperm librar... 315 2e-084
gb|BU997246.1|BU997246 HI07G08r HI Hordeum vulgare subsp. v... 311 3e-083
gb|CV064122.1|CV064122 BNEL98c5 Barley EST endosperm librar... 220 9e-056
gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. v... 172 2e-041
gb|AJ460855.1|AJ460855 AJ460855 S00002 Hordeum vulgare subs... 123 2e-026
gb|CA010088.1|CA010088 HT12A16u HT Hordeum vulgare subsp. v... 72 5e-011
gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA li... 46 0.003
gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA li... 46 0.003
gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 D... 46 0.003
gb|BF259284.2|BF259284 HVSMEf0018M04f Hordeum vulgare seedl... 44 0.011
>gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak42g23 5', mRNA sequence
Length = 633
Score = 658 bits (332), Expect = 0.0
Identities = 503/560 (89%)
Strand = Plus / Minus
Query: 687 ggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatgatttgtt 746
||||| |||||||| |||||||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 633 ggtctgatgatctcttcagagttcagcagaaatatatcaccaatatatagatgatttgtc 574
Query: 747 ggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccacagttgat 806
|||||||| |||||||||| ||| ||||| |||||||| ||||| || || |||||||||
Sbjct: 573 ggcacataaacactacacaattcctcatcacctttgtctgtctggagaacaacagttgat 514
Query: 807 gttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttg 866
||||| ||||| ||||| |||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 513 gttataaatccgaatgcgtattcaccaacacgtggatgtcgaattatcgcaacctcttta 454
Query: 867 aaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatat 926
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 453 aatgctgtcgtattttgatctggtgaaatggcagtgctgacttgctttgatgccgaatat 394
Query: 927 atatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatggttgaa 986
|| || |||||||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct: 393 atgtgctttacaaatggcattttctttataaaccattctccaacccagaagacagttgaa 334
Query: 987 ccaacccatgaagaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaaa 1046
|| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 333 cccacccatgaagaaacaaatattccaaccagaaatatgaatgccagagatgtcagaaaa 274
Query: 1047 ccaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaaca 1106
||||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||
Sbjct: 273 ccaagaccaaatatgtcgactccgatttttgcatatagtgggctgaaaaatccatcaaca 214
Query: 1107 aattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacacat 1166
||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 213 aattgaacgaaccaccatgtgatgaagaacgtgaaagcaacaggaaaaagaaccacacat 154
Query: 1167 ccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcgtgtg 1226
||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| |||
Sbjct: 153 ccagtcataaattttctcgatacccaactctgaagaacagcgcagcatgccttgcgggtg 94
Query: 1227 gaggtggtgggcgagctggg 1246
||||||||||||||||||||
Sbjct: 93 gaggtggtgggcgagctggg 74
>gb|CV054787.1|CV054787 BNEL113c8 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL113c8 5' similar to P0677H08.7, mRNA
sequence
Length = 588
Score = 525 bits (265), Expect = e-147
Identities = 382/421 (90%)
Strand = Plus / Minus
Query: 826 attcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtcgtattttgat 885
||||||||| |||||||| |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 588 attcaccaacacgtggatgtcgaattatcgcaacctctttaaatgctgtcgtattttgat 529
Query: 886 ctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtcttacaaatggca 945
|||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 528 ctggtgaaatggcagtgctgacttgctttgatgccgaatatatgtgctttacaaatggca 469
Query: 946 ttttctttataaaccactcgcccacccagaagatggttgaaccaacccatgaagaaacaa 1005
|||||||||||||||| || || |||||||||| |||||||| ||||||||||||||||
Sbjct: 468 ttttctttataaaccattctccaacccagaagacagttgaacccacccatgaagaaacaa 409
Query: 1006 atattccaaccagaaatatgaataccagagaagtcaaaaaaccaagaccaaatatgtcga 1065
||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 408 atattccaaccagaaatatgaatgccagagatgtcagaaaaccaagaccaaatatgtcga 349
Query: 1066 ttccaatttttgcatataggggactgaaaaaaccatcaacaaattgaataaaccaccatg 1125
||| |||||||||||||| || |||||||| |||||||||||||||| ||||||||||
Sbjct: 348 ctccgatttttgcatatagtgggctgaaaaatccatcaacaaattgaacgaaccaccatg 289
Query: 1126 tgatgaagaacgtgactgcaacaggaaaaaggactacacatccagtcataaactttcttg 1185
||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |
Sbjct: 288 tgatgaagaacgtgaaagcaacaggaaaaagaaccacacatccagtcataaattttctcg 229
Query: 1186 agacccaactttgaagaacagcacagcatgccttgcgtgtggaggtggtgggcgagctgg 1245
| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 228 atacccaactctgaagaacagcgcagcatgccttgcgggtggaggtggtgggcgagctgg 169
Query: 1246 g 1246
|
Sbjct: 168 g 168
>gb|CA014678.1|CA014678 HT12A16r HT Hordeum vulgare subsp. vulgare cDNA clone HT12A16
5-PRIME, mRNA sequence
Length = 675
Score = 410 bits (207), Expect = e-113
Identities = 297/327 (90%)
Strand = Plus / Minus
Query: 886 ctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtcttacaaatggca 945
|||||||||| ||||||||||||||||||||||| |||||||| || |||| |||||||
Sbjct: 336 ctggtgaaatggcagtgctgacttgctttgatgccgaatatatgtgctttacgaatggca 277
Query: 946 ttttctttataaaccactcgcccacccagaagatggttgaaccaacccatgaagaaacaa 1005
|||||||||||||||| || || |||||||||| |||||||| ||||||||||||||||
Sbjct: 276 ttttctttataaaccattctccaacccagaagacagttgaacccacccatgaagaaacaa 217
Query: 1006 atattccaaccagaaatatgaataccagagaagtcaaaaaaccaagaccaaatatgtcga 1065
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 216 atattccaaccagaaatatgaatgccagagatgtcaaaaaaccaagaccaaatatgtcga 157
Query: 1066 ttccaatttttgcatataggggactgaaaaaaccatcaacaaattgaataaaccaccatg 1125
||| |||||||||||||| || |||||||| |||||||||||||||| ||||||||||
Sbjct: 156 ctccgatttttgcatatagtgggctgaaaaatccatcaacaaattgaacgaaccaccatg 97
Query: 1126 tgatgaagaacgtgactgcaacaggaaaaaggactacacatccagtcataaactttcttg 1185
||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |
Sbjct: 96 tgatgaagaacgtgaaagcaacaggaaaaagaaccacacatccagtcataaattttctcg 37
Query: 1186 agacccaactttgaagaacagcacagc 1212
| |||||||| ||||||||||| ||||
Sbjct: 36 atacccaactctgaagaacagcgcagc 10
>gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 3', mRNA sequence
Length = 644
Score = 402 bits (203), Expect = e-110
Identities = 347/395 (87%)
Strand = Plus / Plus
Query: 567 attctatttagacgaatgttctggcttttccgtggcatgggctccagtgatgcaatcacc 626
||||||||||| || ||| ||||||| |||| ||| ||||| || || |||||||| |||
Sbjct: 241 attctatttaggcggatgctctggctcttccttgggatggggtctagcgatgcaattacc 300
Query: 627 tgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggataaatta 686
|| ||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct: 301 tgtggcatggtcattcctccagaaacgataatttcaattccttctcgaatggataagttt 360
Query: 687 ggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatgatttgtt 746
||||| |||||||| |||||||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 361 ggtctgatgatctcttcagagttcagcagaaatatatcaccaatatatagatgatttgtc 420
Query: 747 ggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccacagttgat 806
|||||||| |||||||||| ||| ||||| |||||||| ||||| || || |||||||||
Sbjct: 421 ggcacataaacactacacaattcctcatcacctttgtctgtctggagaacaacagttgat 480
Query: 807 gttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttg 866
||||| ||||| ||||| |||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 481 gttataaatccgaatgcgtattcaccaacacgtggatgtcgaattatcgcaacctcttta 540
Query: 867 aaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatat 926
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 541 aatgctgtcgtattttgatctggtgaaatggcagtgctgacttgctttgatgccgaatat 600
Query: 927 atatgtcttacaaatggcattttctttataaacca 961
|| || ||||||||||||||||||||||||||||
Sbjct: 601 atgtgctttacaaatggcattttctttataaacca 635
>gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL98d5 5' similar to unknown protein, mRNA
sequence
Length = 649
Score = 391 bits (197), Expect = e-107
Identities = 425/501 (84%)
Strand = Plus / Minus
Query: 746 tggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccacagttga 805
||||||||| |||||||||||||||||||| ||||||||||||||||| | || | ||
Sbjct: 649 tggcacatagacactacacagttcttcatcacctttgtcagtctgaagaatcatgctcga 590
Query: 806 tgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttcttt 865
|||||| ||||||||||| ||||||||| || ||||| | ||||||||| ||||||||
Sbjct: 589 tgttataaatccaaatgcgtattcaccagcacggggatggctaattattgccacttcttt 530
Query: 866 gaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaata 925
|| || || ||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 529 aaatgctgttgtattttgatctggtgaaacagcagtgctaacttgctttgatgcagaata 470
Query: 926 tatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatggttga 985
||| || ||||||||||||||||||||||||||||| || || |||||||||| |||||
Sbjct: 469 tatgtgccttacaaatggcattttctttataaaccattctccaacccagaagacagttga 410
Query: 986 accaacccatgaagaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaa 1045
|| |||||||| || || ||||||||||| | |||||||||||| ||||| |||| |||
Sbjct: 409 gcccacccatgatgacacgaatattccaacaataaatatgaatacaagagatgtcacaaa 350
Query: 1046 accaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaac 1105
||||| ||||||| ||||| ||||| |||||||| || |||||||||||||| || |
Sbjct: 349 cccaaggccaaatacgtcgaatccaagctttgcatagagtggactgaaaaaaccgtcgaa 290
Query: 1106 aaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacaca 1165
||| ||||||||||| | ||||||||||| || || || | || |||| ||||||||
Sbjct: 289 gaatcgaataaaccacaaagtgatgaagaatgtcacagccattgggaaaataactacaca 230
Query: 1166 tccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcgtgt 1225
||||||||||||||||||||| ||||| |||||||| || || ||||||||||||| ||
Sbjct: 229 tccagtcataaactttcttgacacccagctttgaaggacggcgaagcatgccttgcgggt 170
Query: 1226 ggaggtggtgggcgagctggg 1246
|||||||| |||||| ||||
Sbjct: 169 ggaggtggccggcgaggtggg 149
>gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0010L20f, mRNA sequence
Length = 834
Score = 371 bits (187), Expect = e-101
Identities = 406/479 (84%)
Strand = Plus / Minus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
||||||| ||||||||||||||||| || |||||||| || || ||||||||||||||
Sbjct: 498 atcacctccggcatggtcattcctccagaaacaattatctctatcccttctcgaatggac 439
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| || || ||||| ||||| |||||||||||| ||| || ||||| || ||||||||
Sbjct: 438 aggttgggccttataatctctgcagagttcaccaaaaagatatcaccaatacatagatga 379
Query: 741 tttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccaca 800
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 378 ttggttggcacatagacactacacagttcttcatcacctttgtcagtctgaagaatcatg 319
Query: 801 gttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaact 860
| |||||||| ||||||||||| ||||||||| || ||||| | ||||||||| |||
Sbjct: 318 ctcgatgttataaatccaaatgcgtattcaccagcacggggatggctaattattgccact 259
Query: 861 tctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgct 920
||||| || || || ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 258 tctttaaatgctgttgtattttgatctggtgaaacagcagtgctaacttgctttgatgca 199
Query: 921 gaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatg 980
|||||||| || ||||||||||||||||||| ||||||||| || || ||||||||||
Sbjct: 198 gaatatatgtgccttacaaatggcattttctctataaaccattctccaacccagaagaca 139
Query: 981 gttgaaccaacccatgaagaaacaaatattccaaccagaaatatgaataccagagaagtc 1040
||||| || |||||||| || || ||||||||||| | |||||||||||| ||||| |||
Sbjct: 138 gttgagcccacccatgatgacacgaatattccaacaataaatatgaatacaagagatgtc 79
Query: 1041 aaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaacc 1099
| ||| ||||| ||||||| ||||| ||||| |||||||| || ||||||||||||||
Sbjct: 78 acaaacccaaggccaaatacgtcgaatccaagctttgcatagagtggactgaaaaaacc 20
>gb|BI957363.1|BI957363 HVSMEn0009C19f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0009C19f,
mRNA sequence
Length = 656
Score = 343 bits (173), Expect = 9e-093
Identities = 411/489 (84%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 759 ctacacagttcttcatcgcctttgtcagtctgaaggaccacagtt-gatgttatgaatcc 817
||||||||||||||||| | ||||||||||||||| | || | |||||||| |||||
Sbjct: 656 ctacacagttcttcatcacttttgtcagtctgaagaatcatgctccgatgttataaatcc 597
Query: 818 aaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtcgt 877
|||||| ||||||||| || ||||| | ||||||||| |||||||| || || || ||
Sbjct: 596 aaatgcgtattcaccagcacggggatggctaattattgccacttctttaaatgctgttgt 537
Query: 878 attttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtcttac 937
||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||
Sbjct: 536 attttgatctggtgaaacagcagtgctaacttgctttgatgcagaatatatgtgccttac 477
Query: 938 aaatggcattttctttataaaccactcgcccacccagaagatggttgaaccaacccatga 997
|||||||||||||||||||||||| || || |||||||||| ||||| || ||||||||
Sbjct: 476 aaatggcattttctttataaaccattctccaacccagaagacagttgagcccacccatga 417
Query: 998 agaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaaaccaagaccaaa 1057
|| || ||||||||||| | |||||||||||| ||||| |||| ||| ||||| |||||
Sbjct: 416 tgacacgaatattccaacaataaatatgaatacaagagatgtcacaaacccaaggccaaa 357
Query: 1058 tatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattgaataaa 1117
|| ||||| ||||| |||||||| || |||||||||||||| || | ||| |||||||
Sbjct: 356 tacgtcgaatccaagctttgcatagagtggactgaaaaaaccgtcgaagaatcgaataaa 297
Query: 1118 ccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacacatccagtcataaa 1177
|||| | ||||||||||| || || || | || |||| || |||||||||||||||||
Sbjct: 296 ccacaaagtgatgaagaatgtcacagccattgggaaaataaccacacatccagtcataaa 237
Query: 1178 ctttcttgagacccaactttgaagaacagcacagcatgccttgcgtgtggaggtggtggg 1237
||||||||| ||||| |||||||| || || ||||||||||||| |||||||||| ||
Sbjct: 236 ctttcttgacacccagctttgaaggacggcgaagcatgccttgcgggtggaggtggccgg 177
Query: 1238 cgagctggg 1246
|||| ||||
Sbjct: 176 cgaggtggg 168
>gb|CV061394.1|CV061394 BNEL68d1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL68d1 5' similar to unknown protein, mRNA
sequence
Length = 554
Score = 315 bits (159), Expect = 2e-084
Identities = 339/399 (84%)
Strand = Plus / Minus
Query: 848 aattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgac 907
||||||||| |||||||| || || || ||||||||||||||||||| |||||||| ||
Sbjct: 547 aattattgccacttctttaaatgctgttgtattttgatctggtgaaacagcagtgctaac 488
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgcc 967
|||||||||||| |||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 487 ttgctttgatgcagaatatatgtgccttacaaatggcattttctttataaaccattctcc 428
Query: 968 cacccagaagatggttgaaccaacccatgaagaaacaaatattccaaccagaaatatgaa 1027
|||||||||| ||||| || |||||||| || || ||||||||||| | |||||||||
Sbjct: 427 aacccagaagacagttgagcccacccatgatgacacgaatattccaacaataaatatgaa 368
Query: 1028 taccagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatatagggg 1087
||| ||||| |||| ||| ||||| ||||||| ||||| ||||| |||||||| || ||
Sbjct: 367 tacaagagatgtcacaaacccaaggccaaatacgtcgaatccaagctttgcatagagtgg 308
Query: 1088 actgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaac 1147
|||||||||||| || | ||| ||||||||||| | ||||||||||| || || || |
Sbjct: 307 actgaaaaaaccgtcgaagaatcgaataaaccacaaagtgatgaagaatgtcacagccat 248
Query: 1148 aggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagc 1207
|| |||| ||||||||||||||||||||||||||||| ||||| |||||||| || ||
Sbjct: 247 tgggaaaataactacacatccagtcataaactttcttgacacccagctttgaaggacggc 188
Query: 1208 acagcatgccttgcgtgtggaggtggtgggcgagctggg 1246
||||||||||||| |||||||||| |||||| ||||
Sbjct: 187 gaagcatgccttgcgggtggaggtggccggcgaggtggg 149
>gb|BU997246.1|BU997246 HI07G08r HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
5-PRIME, mRNA sequence
Length = 640
Score = 311 bits (157), Expect = 3e-083
Identities = 361/429 (84%)
Strand = Plus / Minus
Query: 818 aaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtcgt 877
|||||| ||||||||| || ||||| | ||||||||| |||||||| || || || ||
Sbjct: 640 aaatgcgtattcaccagcacggggatggctaattattgccacttctttaaatgctgttgt 581
Query: 878 attttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtcttac 937
||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||
Sbjct: 580 attttgatctggtgaaacagcagtgctaacttgctttgatgcagaatatatgtgccttac 521
Query: 938 aaatggcattttctttataaaccactcgcccacccagaagatggttgaaccaacccatga 997
|||||||||||||||||||||||| || || |||||||||| ||||| || ||||||||
Sbjct: 520 aaatggcattttctttataaaccattctccaacccagaagacagttgagcccacccatga 461
Query: 998 agaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaaaccaagaccaaa 1057
|| || ||||||||||| | |||||||||||| ||||| |||| ||| ||||| |||||
Sbjct: 460 tgacacgaatattccaacaataaatatgaatacaagagatgtcacaaacccaaggccaaa 401
Query: 1058 tatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattgaataaa 1117
|| ||||| ||||| |||||||| || |||||||||||||| || | ||| |||||||
Sbjct: 400 tacgtcgaatccaagctttgcatagagtggactgaaaaaaccgtcgaagaatcgaataaa 341
Query: 1118 ccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacacatccagtcataaa 1177
|||| | ||||||||||| || || || | || |||| || |||||||||||||||||
Sbjct: 340 ccacaaagtgatgaagaatgtcacagccattgggaaaataaccacacatccagtcataaa 281
Query: 1178 ctttcttgagacccaactttgaagaacagcacagcatgccttgcgtgtggaggtggtggg 1237
||||||||| ||||| |||||||| || || ||||||||||||| |||||||||| ||
Sbjct: 280 ctttcttgacacccagctttgaaggacggcgaagcatgccttgcgggtggaggtggccgg 221
Query: 1238 cgagctggg 1246
|||| ||||
Sbjct: 220 cgaggtggg 212
>gb|CV064122.1|CV064122 BNEL98c5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL98c5 5' similar to Oryza sativa, mRNA
sequence
Length = 648
Score = 220 bits (111), Expect = 9e-056
Identities = 394/487 (80%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 746 tggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccacagttga 805
|||| |||| || |||||||||| |||||| ||||||||||| ||||| | || | ||
Sbjct: 648 tggctcatagacgctacacagttgttcatcacctttgtcagtgtgaagaatcatgctcga 589
Query: 806 tgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttcttt 865
||| || ||||||||||| ||||||||| || | ||| | |||||| || ||||||||
Sbjct: 588 tgtcat-aatccaaatgcgtattcaccagcacgggtatgcctaattatggccacttcttt 530
Query: 866 gaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaata 925
| || || ||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct: 529 atacgctgttgtattttgatctggtgaaacatcagtgctaacttgctttgatgcagaata 470
Query: 926 tatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatggttga 985
||| || ||||||||||||||||||||||||||||| || || ||||||||| |||||
Sbjct: 469 tatgtgccttacaaatggcattttctttataaaccattctccaacccagaagtcagttga 410
Query: 986 accaacccatgaagaaacaaatattccaaccagaaatatgaataccagagaagtcaaaaa 1045
|| |||||||| || | |||||||| | ||||||||||| ||||| ||| |
Sbjct: 409 gcccacccatgatgactcgaatattcccctaatcaatatgaatacgagagatgtcccgta 350
Query: 1046 accaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaac 1105
|| || ||||||| ||||| ||||| |||||||| || |||||||||||||| || |
Sbjct: 349 ccccaggccaaatacgtcgaatccaagctttgcatagagtggactgaaaaaaccgtcgaa 290
Query: 1106 aaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaaggactacaca 1165
||| ||||||||||| | ||||||||||| || || || | || |||| ||||||||
Sbjct: 289 gaatcgaataaaccacaaagtgatgaagaatgtcacagccattgggaaaataactacaca 230
Query: 1166 tccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcgtgt 1225
|||||||||||||||||||| ||||| |||||||| || || ||||||||||||| ||
Sbjct: 229 tccagtcataaactttcttggcacccagctttgaaggacggcgaagcatgccttgcgggt 170
Query: 1226 ggaggtg 1232
|||||||
Sbjct: 169 ggaggtg 163
>gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
3-PRIME, mRNA sequence
Length = 580
Score = 172 bits (87), Expect = 2e-041
Identities = 174/203 (85%)
Strand = Plus / Plus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
|||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||
Sbjct: 376 atcacctgcggcatggtcattcctccagaaacaattatttctatcccttctcgaatggac 435
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| || || ||||| || || |||||||||||| ||| || ||||| || |||||||||
Sbjct: 436 aggttgggccttataatttctgcagagttcaccaaaaagatatcaccaatatatagatga 495
Query: 741 tttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccaca 800
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 496 ttggttggcacatagacactacacagttcttcatcacctttgtcagtctgaagaatcatg 555
Query: 801 gttgatgttatgaatccaaatgc 823
| |||||||| |||||||||||
Sbjct: 556 ctcgatgttataaatccaaatgc 578
>gb|AJ460855.1|AJ460855 AJ460855 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071B10F1, mRNA sequence
Length = 240
Score = 123 bits (62), Expect = 2e-026
Identities = 116/134 (86%)
Strand = Plus / Minus
Query: 567 attctatttagacgaatgttctggcttttccgtggcatgggctccagtgatgcaatcacc 626
||||||||||| || ||| ||||||| |||| ||| ||||| || || |||||||| |||
Sbjct: 135 attctatttaggcggatgctctggctcttccttgggatggggtctagcgatgcaattacc 76
Query: 627 tgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggataaatta 686
|| ||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct: 75 tgtggcatggtcattcctccagaaacgataatttcaattccttctcgaatggataagttt 16
Query: 687 ggtcttatgatctc 700
||||| ||||||||
Sbjct: 15 ggtctgatgatctc 2
>gb|CA010088.1|CA010088 HT12A16u HT Hordeum vulgare subsp. vulgare cDNA clone HT12A16
3-PRIME, mRNA sequence
Length = 536
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 567 attctatttagacgaatgttctggcttttccgtggcatgggctccagtgatgcaatcacc 626
||||||||||| || ||| ||||||| |||| ||| ||||| || || |||||||| |||
Sbjct: 416 attctatttaggcggatgctctggctcttccttgggatggggtctagcgatgcaattacc 475
Query: 627 tgaggcatggtcattcctcc 646
|| |||||||||||||||||
Sbjct: 476 tgtggcatggtcattcctcc 495
>gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35h23 3', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 810 atgaatccaaatgcatattcaccaattcgtggatg 844
|||||||||||||||||||| ||||| || |||||
Sbjct: 425 atgaatccaaatgcatattccccaatacgaggatg 459
>gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15k07 3', mRNA sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 810 atgaatccaaatgcatattcaccaattcgtggatg 844
|||||||||||||||||||| ||||| || |||||
Sbjct: 425 atgaatccaaatgcatattccccaatacgaggatg 459
>gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_H19 5', mRNA sequence
Length = 527
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 810 atgaatccaaatgcatattcaccaattcgtggatg 844
|||||||||||||||||||| ||||| || |||||
Sbjct: 345 atgaatccaaatgcatattccccaatacgaggatg 311
Score = 44.1 bits (22), Expect = 0.011
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 1047 ccaagaccaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaaca 1106
||||||||||| |||| |||||| | || |||||| | ||| ||| || |||||||||
Sbjct: 108 ccaagaccaaaaatgttgattcccaattgtgcatagattggagagaagaatccatcaaca 49
Query: 1107 aattgaataaaccaccatgtga 1128
|| ||||| |||||||| ||||
Sbjct: 48 aaatgaatgaaccaccaggtga 27
>gb|BF259284.2|BF259284 HVSMEf0018M04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0018M04f, mRNA sequence
Length = 786
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1098 ccatcaacaaattgaataaacc 1119
||||||||||||||||||||||
Sbjct: 613 ccatcaacaaattgaataaacc 634
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,973
Number of Sequences: 312970
Number of extensions: 108973
Number of successful extensions: 32494
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32445
Number of HSP's gapped (non-prelim): 37
length of query: 1264
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1245
effective length of database: 169,188,109
effective search space: 210639195705
effective search space used: 210639195705
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)