BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedl... 174 2e-042
gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedl... 174 2e-042
gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachi... 174 2e-042
gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachi... 174 2e-042
gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA li... 174 2e-042
gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA li... 174 2e-042
gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA li... 174 2e-042
gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. v... 174 2e-042
gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. v... 174 2e-042
gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedl... 167 5e-040
gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedl... 167 5e-040
gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. v... 163 8e-039
gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. v... 153 8e-036
gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachi... 151 3e-035
gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachi... 151 3e-035
gb|BI957710.1|BI957710 HVSMEn0010N01f Hordeum vulgare rachi... 123 7e-027
gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots... 115 2e-024
gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedl... 115 2e-024
gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedl... 115 2e-024
gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachi... 115 2e-024
gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedl... 115 2e-024
gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedl... 115 2e-024
gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedl... 115 2e-024
gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedl... 115 2e-024
gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedl... 115 2e-024
gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedl... 115 2e-024
gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedl... 115 2e-024
gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachi... 115 2e-024
gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachi... 115 2e-024
gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedl... 115 2e-024
gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hyd... 115 2e-024
gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, dro... 115 2e-024
gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. v... 115 2e-024
gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. v... 115 2e-024
gb|AL500139.1|AL500139 AL500139 Hordeum vulgare Barke etiol... 113 7e-024
gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots... 113 7e-024
gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots... 113 7e-024
gb|AL501924.1|AL501924 AL501924 Hordeum vulgare Barke roots... 113 7e-024
gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots... 113 7e-024
gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachi... 113 7e-024
gb|AJ431813.1|AJ431813 AJ431813 S00002 Hordeum vulgare subs... 113 7e-024
gb|BQ662110.1|BQ662110 HR01J19u HR Hordeum vulgare subsp. v... 113 7e-024
gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. v... 113 7e-024
gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. v... 113 7e-024
gb|CA017111.1|CA017111 HV14N14u HV Hordeum vulgare subsp. v... 113 7e-024
gb|CD663835.1|CD663835 UCRHV18_06dc01_b1 Drought-stressed D... 113 7e-024
gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots... 107 4e-022
gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. v... 105 2e-021
gb|BU977235.1|BU977235 HA11B05r HA Hordeum vulgare subsp. v... 103 7e-021
gb|AL501387.1|AL501387 AL501387 Hordeum vulgare Barke roots... 101 3e-020
gb|BI959367.1|BI959367 HVSMEn0019G08f Hordeum vulgare rachi... 101 3e-020
gb|BI960119.1|BI960119 HVSMEn0023E19f Hordeum vulgare rachi... 101 3e-020
gb|BF065240.1|BF065240 HV_CEb0024I11f Hordeum vulgare seedl... 100 1e-019
gb|BF264389.2|BF264389 HV_CEa0009E18f Hordeum vulgare seedl... 100 1e-019
gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedl... 100 1e-019
gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedl... 98 4e-019
gb|BI959561.1|BI959561 HVSMEn0020D05f Hordeum vulgare rachi... 96 2e-018
gb|BI960120.1|BI960120 HVSMEn0023E20f Hordeum vulgare rachi... 96 2e-018
gb|AL504625.1|AL504625 AL504625 Hordeum vulgare Barke roots... 94 6e-018
gb|BQ460884.1|BQ460884 HE01O17r HE Hordeum vulgare subsp. v... 94 6e-018
gb|BI956791.1|BI956791 HVSMEn0005F21f Hordeum vulgare rachi... 92 3e-017
gb|BI957460.1|BI957460 HVSMEn0009L10f Hordeum vulgare rachi... 92 3e-017
gb|BI959235.1|BI959235 HVSMEn0018M17f Hordeum vulgare rachi... 92 3e-017
gb|BI959396.1|BI959396 HVSMEn0019I08f Hordeum vulgare rachi... 92 3e-017
gb|BQ467961.1|BQ467961 HR01H17r HR Hordeum vulgare subsp. v... 92 3e-017
gb|CA020338.1|CA020338 HZ36A04r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA021273.1|CA021273 HZ39J21r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|AL450922.1|AL450922 AL450922 Hordeum vulgare Barke etiol... 90 1e-016
gb|BQ662084.1|BQ662084 HR01H17u HR Hordeum vulgare subsp. v... 90 1e-016
gb|BI959659.1|BI959659 HVSMEn0020K11f Hordeum vulgare rachi... 86 2e-015
gb|BQ765794.1|BQ765794 EBro03_SQ008_N04_R root, 3 week, wat... 84 6e-015
gb|BM100502.2|BM100502 EBma01_SQ005_G14_R maternal, 4 DPA, ... 80 1e-013
gb|BG299397.1|BG299397 HVSMEa0019M12f Hordeum vulgare seedl... 76 2e-012
gb|BF627066.2|BF627066 HVSMEb0002G16f Hordeum vulgare seedl... 74 6e-012
gb|BF256079.2|BF256079 HVSMEf0008K20f Hordeum vulgare seedl... 74 6e-012
gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedl... 74 6e-012
gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa... 74 6e-012
gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA li... 74 6e-012
gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA li... 74 6e-012
gb|BQ468365.1|BQ468365 HM01A23T HM Hordeum vulgare subsp. v... 74 6e-012
gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. v... 74 6e-012
gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. v... 74 6e-012
gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. v... 74 6e-012
gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. v... 74 6e-012
gb|BG370011.2|BG370011 HVSMEi0026P07f Hordeum vulgare 20 DA... 72 2e-011
gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA li... 72 2e-011
gb|BI779395.2|BI779395 EBro01_SQ003_O04_R root, 3 week, hyd... 72 2e-011
gb|BF261040.2|BF261040 HVSMEf0023J16f Hordeum vulgare seedl... 70 9e-011
gb|BQ471953.1|BQ471953 HV03P16r HV Hordeum vulgare subsp. v... 68 4e-010
gb|BF259949.2|BF259949 HVSMEf0020L06f Hordeum vulgare seedl... 66 1e-009
gb|BU994270.1|BU994270 HM06G24r HM Hordeum vulgare subsp. v... 66 1e-009
gb|CB880402.1|CB880402 HM06G24w HM Hordeum vulgare subsp. v... 66 1e-009
gb|BF629072.2|BF629072 HVSMEb0009M09f Hordeum vulgare seedl... 64 6e-009
gb|BI957501.1|BI957501 HVSMEn0009O03f Hordeum vulgare rachi... 62 2e-008
gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachi... 62 2e-008
gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachi... 62 2e-008
gb|BE602379.3|BE602379 HVSMEh0098L05f Hordeum vulgare 5-45 ... 62 2e-008
gb|BM928851.1|BM928851 LP20008 Lemma/palea-enriched cDNA li... 62 2e-008
gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hyd... 62 2e-008
gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. v... 62 2e-008
gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. v... 62 2e-008
gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. v... 62 2e-008
gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. v... 62 2e-008
gb|BJ545234.1|BJ545234 BJ545234 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ546714.1|BJ546714 BJ546714 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA li... 62 2e-008
gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. v... 62 2e-008
gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. v... 62 2e-008
gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. v... 62 2e-008
gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedl... 60 9e-008
gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike... 60 9e-008
gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachi... 60 9e-008
gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA,... 60 9e-008
gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hyd... 60 9e-008
gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. v... 60 9e-008
gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. v... 60 9e-008
gb|CA018785.1|CA018785 HV09K09r HV Hordeum vulgare subsp. v... 60 9e-008
gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA li... 60 9e-008
gb|BU977317.1|BU977317 HA11D12r HA Hordeum vulgare subsp. v... 58 4e-007
gb|CA025276.1|CA025276 HZ51K20r HZ Hordeum vulgare subsp. v... 58 4e-007
gb|BI952091.1|BI952091 HVSMEm0004J09f Hordeum vulgare green... 56 1e-006
gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachi... 56 1e-006
gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachi... 56 1e-006
gb|BF065210.2|BF065210 HV_CEb0024C21f Hordeum vulgare seedl... 54 6e-006
gb|CD663691.1|CD663691 UCRHV18_06bd02_b1 Drought-stressed D... 54 6e-006
gb|BI960085.1|BI960085 HVSMEn0023C11f Hordeum vulgare rachi... 50 9e-005
gb|BF619963.2|BF619963 HVSMEc0009N12f Hordeum vulgare seedl... 48 3e-004
gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachi... 48 3e-004
gb|BF065682.1|BF065682 HV_CEb0013G02f Hordeum vulgare seedl... 46 0.001
gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedl... 44 0.005
gb|AL501842.1|AL501842 AL501842 Hordeum vulgare Barke roots... 42 0.021
gb|BF065160.1|BF065160 HV_CEb0023K10f Hordeum vulgare seedl... 42 0.021
gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedl... 40 0.084
gb|BF266009.2|BF266009 HV_CEa0013O16f Hordeum vulgare seedl... 40 0.084
>gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013N02f, mRNA sequence
Length = 756
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 554 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 495
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 494 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 435
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 434 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 375
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 374 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 315
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 314 tgggcttgtcggcgtccacgaacgcgaagtcg 283
>gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012D15f, mRNA sequence
Length = 830
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 268
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 267 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 208
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 207 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 148
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 147 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 88
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 87 tgggcttgtcggcgtccacgaacgcgaagtcg 56
>gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009J18f, mRNA sequence
Length = 667
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 547 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 488
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 487 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 428
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 427 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 368
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 367 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 308
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 307 tgggcttgtcggcgtccacgaacgcgaagtcg 276
>gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014P16f, mRNA sequence
Length = 660
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 320
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 321 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 380
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 381 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 440
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 441 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 500
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 501 tgggcttgtcggcgtccacgaacgcgaagtcg 532
>gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 5', mRNA sequence
Length = 573
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 306
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 305 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 246
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 245 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 186
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 185 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 126
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 125 tgggcttgtcggcgtccacgaacgcgaagtcg 94
>gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35l16 3', mRNA sequence
Length = 705
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 235 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 294
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 295 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 354
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 355 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 414
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 415 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 474
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 475 tgggcttgtcggcgtccacgaacgcgaagtcg 506
>gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 3', mRNA sequence
Length = 630
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 320
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 321 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 380
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 381 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 440
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 441 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 500
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 501 tgggcttgtcggcgtccacgaacgcgaagtcg 532
>gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. vulgare cDNA clone HP08E22
5-PRIME, mRNA sequence
Length = 581
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 539 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 480
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 479 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 420
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 419 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 360
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 359 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 300
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 299 tgggcttgtcggcgtccacgaacgcgaagtcg 268
>gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. vulgare cDNA clone HP08H09
5-PRIME, mRNA sequence
Length = 478
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 248
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 247 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 188
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 187 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 128
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 127 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 68
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 67 tgggcttgtcggcgtccacgaacgcgaagtcg 36
>gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D09f, mRNA sequence
Length = 518
Score = 167 bits (84), Expect = 5e-040
Identities = 225/272 (82%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 514 agacgacgcggcggcagatggtgacgcagtcggcgatggcgagctggcagacctcgatgc 455
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 454 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 395
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 394 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 335
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 334 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 275
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 274 tgggcttgtcggcgtccacgaacgcgaagtcg 243
>gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005D24f, mRNA sequence
Length = 541
Score = 167 bits (84), Expect = 5e-040
Identities = 225/272 (82%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 272 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 213
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 212 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 153
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 152 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 93
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || ||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 92 agatgatggtgccgccgacgcgcaccacccgcagcagctgctcgtggtagcgcacgtagt 33
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 32 tgggcttgtcggcgtccacgaacgcgaagtcg 1
>gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. vulgare cDNA clone HV06J09
3-PRIME, mRNA sequence
Length = 496
Score = 163 bits (82), Expect = 8e-039
Identities = 217/262 (82%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 232 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 291
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 292 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 351
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 352 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 411
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 412 aaatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 471
Query: 486 taggcttgtcggcgtcgacgaa 507
| |||||||||||||| |||||
Sbjct: 472 tgggcttgtcggcgtccacgaa 493
>gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. vulgare cDNA clone HR01B07
3-PRIME, mRNA sequence
Length = 502
Score = 153 bits (77), Expect = 8e-036
Identities = 209/253 (82%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 250 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 309
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 310 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 369
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 370 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 429
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct: 430 atatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 489
Query: 486 taggcttgtcggc 498
| |||||||||||
Sbjct: 490 tgggcttgtcggc 502
>gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O22f, mRNA sequence
Length = 629
Score = 151 bits (76), Expect = 3e-035
Identities = 223/272 (81%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 324
Query: 306 ggggatcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcga 365
| || || | ||| | ||||||| ||||||| |||||||||||| | | |||||
Sbjct: 323 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 264
Query: 366 ggtcgctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgt 425
||||| | |||| | | | || |||||||| || ||| |||| |||||||||||||
Sbjct: 263 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 204
Query: 426 acacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagt 485
| | || ||| || |||||||||||||| || ||||| ||||||||| || ||||||
Sbjct: 203 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggccgcgcccgtagt 144
Query: 486 taggcttgtcggcgtcgacgaaggcgaagtcg 517
| |||||||||||||| ||||| |||||||||
Sbjct: 143 tgggcttgtcggcgtccacgaacgcgaagtcg 112
>gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016H12f, mRNA sequence
Length = 676
Score = 151 bits (76), Expect = 3e-035
Identities = 220/268 (82%)
Strand = Plus / Minus
Query: 250 gacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcgggg 309
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct: 469 gacgcgccggcagatggtgacgcggtcggcgatggcgagctggcagacctcgatgcgcgg 410
Query: 310 atcctgagaaagccggacgttgagttccctgatggcggcggagaacctgcggtcgaggtc 369
|| | ||| | ||||||| ||||||| |||||||||||| | | |||||||||
Sbjct: 409 gtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcgaggtc 350
Query: 370 gctgagcggcgcgtcggggggaagcgccacagtaccggcccacagcgtgttgtcgtacac 429
| | |||| | | | || |||||||| || ||| |||| |||||||||||||| |
Sbjct: 349 ggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgtagat 290
Query: 430 gacggtacccccgacgcgcaccaggcggagcagttgctcgtggtaccggacgtagttagg 489
|| ||| || |||||||||||||| || ||||| ||||||||||| || |||||||| ||
Sbjct: 289 gatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagttggg 230
Query: 490 cttgtcggcgtcgacgaaggcgaagtcg 517
|||||||||||| ||||| |||||||||
Sbjct: 229 cttgtcggcgtccacgaacgcgaagtcg 202
>gb|BI957710.1|BI957710 HVSMEn0010N01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010N01f, mRNA sequence
Length = 638
Score = 123 bits (62), Expect = 7e-027
Identities = 110/126 (87%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| |||||||||||||||
Sbjct: 629 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgcccccgacgcgcacc 570
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || |||||||||| |||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 569 agccgcagcagttgcttgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 510
Query: 512 aagtcg 517
||||||
Sbjct: 509 aagtcg 504
>gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24T 5', mRNA sequence
Length = 700
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 651 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 592
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 591 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 532
Query: 512 aagtcg 517
||||||
Sbjct: 531 aagtcg 526
>gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009A08f, mRNA sequence
Length = 804
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 658 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 599
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 598 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 539
Query: 512 aagtcg 517
||||||
Sbjct: 538 aagtcg 533
>gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018K06f, mRNA sequence
Length = 749
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 643 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 584
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 583 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 524
Query: 512 aagtcg 517
||||||
Sbjct: 523 aagtcg 518
>gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F23f, mRNA sequence
Length = 654
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 439 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 380
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 379 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 320
Query: 512 aagtcg 517
||||||
Sbjct: 319 aagtcg 314
>gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016H01f, mRNA sequence
Length = 705
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 658 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 599
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 598 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 539
Query: 512 aagtcg 517
||||||
Sbjct: 538 aagtcg 533
>gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021J17f, mRNA sequence
Length = 714
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 677 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 618
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 617 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 558
Query: 512 aagtcg 517
||||||
Sbjct: 557 aagtcg 552
>gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020A16f, mRNA sequence
Length = 816
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 423 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 482
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 483 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 542
Query: 512 aagtcg 517
||||||
Sbjct: 543 aagtcg 548
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 333
>gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022L14f, mRNA sequence
Length = 737
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 688 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 629
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 628 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 569
Query: 512 aagtcg 517
||||||
Sbjct: 568 aagtcg 563
>gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003H21f, mRNA sequence
Length = 694
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 628 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 569
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 568 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 509
Query: 512 aagtcg 517
||||||
Sbjct: 508 aagtcg 503
>gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009C13f, mRNA sequence
Length = 649
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 648 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 589
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 588 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 529
Query: 512 aagtcg 517
||||||
Sbjct: 528 aagtcg 523
>gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010K05f, mRNA sequence
Length = 697
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 651 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 592
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 591 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 532
Query: 512 aagtcg 517
||||||
Sbjct: 531 aagtcg 526
>gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I06f, mRNA sequence
Length = 630
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 525 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 466
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 465 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 406
Query: 512 aagtcg 517
||||||
Sbjct: 405 aagtcg 400
>gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024H14f, mRNA sequence
Length = 652
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 637 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 578
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 577 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 518
Query: 512 aagtcg 517
||||||
Sbjct: 517 aagtcg 512
>gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022G03f, mRNA sequence
Length = 816
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 630 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 571
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 570 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 511
Query: 512 aagtcg 517
||||||
Sbjct: 510 aagtcg 505
Score = 101 bits (51), Expect = 3e-020
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctc 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 776 agacgacgcggcggcagatggtaacgccgtcggcgatggcgagctggcagacctc 722
Score = 40.1 bits (20), Expect = 0.084
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 327 cgttgagttccctgatggcggcggagaa 354
||||||| ||||||| ||||||||||||
Sbjct: 695 cgttgaggtccctgagggcggcggagaa 668
>gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_D18 5', mRNA sequence
Length = 540
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 407 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 348
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 347 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 288
Query: 512 aagtcg 517
||||||
Sbjct: 287 aagtcg 282
Score = 79.8 bits (40), Expect = 1e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 259 gcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 gcagatggtgacgccgtcggcgatggcgagctggcagccctcga 497
>gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L13 5', mRNA sequence
Length = 673
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 649 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 590
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 589 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 530
Query: 512 aagtcg 517
||||||
Sbjct: 529 aagtcg 524
>gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU06B07
5-PRIME, mRNA sequence
Length = 454
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 382 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 323
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 322 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 263
Query: 512 aagtcg 517
||||||
Sbjct: 262 aagtcg 257
>gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05N12
3-PRIME, mRNA sequence
Length = 544
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 321 agcgccaccgtgccgccccagagcgtgttgtcgtaaatgatggtgccgccgacgcgcacc 380
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtcgacgaaggcg 511
|| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 381 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcg 440
Query: 512 aagtcg 517
||||||
Sbjct: 441 aagtcg 446
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 231
>gb|AL500139.1|AL500139 AL500139 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05A17r 3', mRNA sequence
Length = 500
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 352
>gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24u 3', mRNA sequence
Length = 439
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 271
Score = 48.1 bits (24), Expect = 3e-004
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtaccc-ccgacgcgcac 450
|||||||| || ||| |||| |||||||||||||| | || || ||| |||||||||||
Sbjct: 361 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggngcccgccgacgcgcac 420
Query: 451 caggcggagcagttgctcg 469
||| || ||||| ||||||
Sbjct: 421 cagccgcagcagctgctcg 439
>gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01G24u 3', mRNA sequence
Length = 461
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 324
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgta 426
|||||||| || ||| |||| ||||||||||||||
Sbjct: 414 agcgccaccgtgccgccccagagcgtgttgtcgta 448
>gb|AL501924.1|AL501924 AL501924 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05N15u 3', mRNA sequence
Length = 507
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 361
>gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01D10T 5', mRNA sequence
Length = 481
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 358
>gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023A12f, mRNA sequence
Length = 639
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 321
Score = 99.6 bits (50), Expect = 1e-019
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 392 agcgccacagtaccggcccacagcgtgttgtcgtacacgacggtacccccgacgcgcacc 451
|||||||| || ||| |||| |||||||||||||| | || ||| || ||||||||||||
Sbjct: 411 agcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcacc 470
Query: 452 aggcggagcagttgctcgtggtaccggacgtagttaggcttgtcggcgtc 501
|| || ||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct: 471 agccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtc 520
>gb|AJ431813.1|AJ431813 AJ431813 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200007A09F1, mRNA sequence
Length = 344
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 28
>gb|BQ662110.1|BQ662110 HR01J19u HR Hordeum vulgare subsp. vulgare cDNA clone HR01J19
3-PRIME, mRNA sequence
Length = 403
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 306
>gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L16
3-PRIME, mRNA sequence
Length = 336
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 229
>gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. vulgare cDNA clone HV06L01
3-PRIME, mRNA sequence
Length = 442
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 320
>gb|CA017111.1|CA017111 HV14N14u HV Hordeum vulgare subsp. vulgare cDNA clone HV14N14
3-PRIME, mRNA sequence
Length = 181
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 146
>gb|CD663835.1|CD663835 UCRHV18_06dc01_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06dc01, mRNA sequence
Length = 268
Score = 113 bits (57), Expect = 7e-024
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 245
>gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09E08u 3', mRNA sequence
Length = 372
Score = 107 bits (54), Expect = 4e-022
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 195 agacgacgcggcggcagatggtgacgccgtcggngatggcgagctggcagacctcga 251
>gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. vulgare cDNA clone HV08B21
3-PRIME, mRNA sequence
Length = 426
Score = 105 bits (53), Expect = 2e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agacaacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 306
>gb|BU977235.1|BU977235 HA11B05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11B05
5-PRIME, mRNA sequence
Length = 643
Score = 103 bits (52), Expect = 7e-021
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 414 gcgtgttgtcgtacacgacggtacccccgacgcgcaccaggcggagcagttgctcgtggt 473
||||||||||||| | || ||| || |||||||||||||| || ||||| ||||||||||
Sbjct: 643 gcgtgttgtcgtagatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggt 584
Query: 474 accggacgtagttaggcttgtcggcgtcgacgaaggcgaagtcg 517
| || |||||||| |||||||||||||| ||||| |||||||||
Sbjct: 583 agcgcacgtagttgggcttgtcggcgtccacgaacgcgaagtcg 540
>gb|AL501387.1|AL501387 AL501387 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04A08u 3', mRNA sequence
Length = 453
Score = 101 bits (51), Expect = 3e-020
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 246 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 302
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 297 agacgacgcggcggnagatggtgacgccgtcggcgatggcgagctggnagacctcga 353
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,102
Number of Sequences: 312970
Number of extensions: 88102
Number of successful extensions: 25793
Number of sequences better than 0.5: 134
Number of HSP's better than 0.5 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25547
Number of HSP's gapped (non-prelim): 237
length of query: 617
length of database: 175,134,539
effective HSP length: 19
effective length of query: 598
effective length of database: 169,188,109
effective search space: 101174489182
effective search space used: 101174489182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)