BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.4
(582 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 357 3e-097
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 357 3e-097
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 357 3e-097
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 337 2e-091
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 309 5e-083
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 301 1e-080
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 238 2e-061
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 238 2e-061
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 238 2e-061
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 212 1e-053
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 198 1e-049
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 198 1e-049
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 180 3e-044
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 180 3e-044
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 168 1e-040
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 163 8e-039
gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. v... 149 1e-034
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 145 2e-033
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 135 2e-030
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 127 4e-028
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 119 1e-025
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 117 4e-025
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 117 4e-025
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 117 4e-025
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 117 4e-025
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 117 4e-025
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 105 2e-021
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 101 2e-020
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 101 2e-020
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 101 2e-020
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 101 2e-020
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 101 2e-020
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 101 2e-020
gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, dro... 101 2e-020
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 101 2e-020
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 101 2e-020
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 101 2e-020
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 100 1e-019
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 98 4e-019
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 98 4e-019
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 96 2e-018
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 96 2e-018
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 96 2e-018
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 94 6e-018
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 94 6e-018
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 94 6e-018
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 90 9e-017
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 88 4e-016
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 88 4e-016
gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. v... 88 4e-016
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 84 6e-015
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 82 2e-014
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 82 2e-014
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 80 9e-014
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 78 4e-013
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 76 1e-012
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 74 6e-012
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 72 2e-011
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 72 2e-011
gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedl... 68 3e-010
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 68 3e-010
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 68 3e-010
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 64 5e-009
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 62 2e-008
gb|AV836742.1|AV836742 AV836742 K. Sato unpublished cDNA li... 60 8e-008
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 56 1e-006
gb|AV917087.1|AV917087 AV917087 K. Sato unpublished cDNA li... 56 1e-006
gb|BQ658207.1|BQ658207 HA05E07u HA Hordeum vulgare subsp. v... 56 1e-006
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 54 5e-006
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 54 5e-006
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 54 5e-006
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 54 5e-006
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 54 5e-006
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 54 5e-006
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 52 2e-005
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 52 2e-005
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 52 2e-005
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 52 2e-005
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 52 2e-005
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 52 2e-005
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 52 2e-005
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 50 8e-005
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 50 8e-005
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 50 8e-005
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 48 3e-004
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 48 3e-004
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 48 3e-004
gb|BQ657386.1|BQ657386 HA08J01u HA Hordeum vulgare subsp. v... 46 0.001
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 44 0.005
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 44 0.005
gb|BI957319.1|BI957319 HVSMEn0008N17f Hordeum vulgare rachi... 44 0.005
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 44 0.005
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 44 0.005
gb|AJ436682.1|AJ436682 AJ436682 S00002 Hordeum vulgare subs... 44 0.005
gb|AJ463502.1|AJ463502 AJ463502 S00002 Hordeum vulgare subs... 44 0.005
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 44 0.005
gb|BQ763405.1|BQ763405 EBro02_SQ008_D08_R root, 3 week, hyd... 44 0.005
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 42 0.020
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 42 0.020
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 42 0.020
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 40 0.079
gb|BQ462628.1|BQ462628 HI01I10T HI Hordeum vulgare subsp. v... 40 0.079
gb|BQ462819.1|BQ462819 HI02B17r HI Hordeum vulgare subsp. v... 40 0.079
gb|BQ466026.1|BQ466026 HT01F21T HT Hordeum vulgare subsp. v... 40 0.079
gb|BU999278.1|BU999278 HI14A12r HI Hordeum vulgare subsp. v... 40 0.079
gb|CA032711.1|CA032711 HX13P23r HX Hordeum vulgare subsp. v... 40 0.079
gb|BE601938.2|BE601938 HVSMEh0100F06f Hordeum vulgare 5-45 ... 38 0.31
gb|BI950956.1|BI950956 HVSMEl0023M20f Hordeum vulgare spike... 38 0.31
gb|BI951549.1|BI951549 HVSMEm0001F23f Hordeum vulgare green... 38 0.31
gb|BI951887.1|BI951887 HVSMEm0003I17f Hordeum vulgare green... 38 0.31
gb|BI954322.1|BI954322 HVSMEm0017D17f Hordeum vulgare green... 38 0.31
gb|BF065086.1|BF065086 HV_CEb0022O15f Hordeum vulgare seedl... 38 0.31
gb|BF262645.1|BF262645 HV_CEa0004I22f Hordeum vulgare seedl... 38 0.31
gb|BF264616.1|BF264616 HV_CEa0009O12f Hordeum vulgare seedl... 38 0.31
gb|BE215700.2|BE215700 HV_CEb0008E03f Hordeum vulgare seedl... 38 0.31
gb|BF065890.2|BF065890 HV_CEb0014E10f Hordeum vulgare seedl... 38 0.31
gb|BG415709.1|BG415709 HVSMEk0007I19f Hordeum vulgare testa... 38 0.31
gb|BI958446.1|BI958446 HVSMEn0015A19f Hordeum vulgare rachi... 38 0.31
gb|BI959119.1|BI959119 HVSMEn0018E07f Hordeum vulgare rachi... 38 0.31
gb|BI959679.1|BI959679 HVSMEn0020M03f Hordeum vulgare rachi... 38 0.31
gb|BG365237.2|BG365237 HVSMEi0001O20f Hordeum vulgare 20 DA... 38 0.31
gb|AV923036.1|AV923036 AV923036 K. Sato unpublished cDNA li... 38 0.31
gb|AV923803.1|AV923803 AV923803 K. Sato unpublished cDNA li... 38 0.31
gb|AV924447.1|AV924447 AV924447 K. Sato unpublished cDNA li... 38 0.31
gb|BI779507.2|BI779507 EBro01_SQ004_E06_R root, 3 week, hyd... 38 0.31
gb|BI778617.2|BI778617 EBro07_SQ003_N03_R root, 3 week, red... 38 0.31
gb|BQ759129.1|BQ759129 EBma07_SQ003_K19_R maternal, 21 DPA,... 38 0.31
gb|BQ762945.1|BQ762945 EBro02_SQ006_J18_R root, 3 week, hyd... 38 0.31
gb|BQ767189.1|BQ767189 EBro08_SQ008_P05_R root, 3 week, dro... 38 0.31
gb|BU983972.1|BU983972 HA31J15r HA Hordeum vulgare subsp. v... 38 0.31
gb|BJ547207.1|BJ547207 BJ547207 K. Sato unpublished cDNA li... 38 0.31
gb|BJ547378.1|BJ547378 BJ547378 K. Sato unpublished cDNA li... 38 0.31
gb|BJ547760.1|BJ547760 BJ547760 K. Sato unpublished cDNA li... 38 0.31
gb|BJ547900.1|BJ547900 BJ547900 K. Sato unpublished cDNA li... 38 0.31
gb|CB874366.1|CB874366 HX05A24w HX Hordeum vulgare subsp. v... 38 0.31
gb|CB879106.1|CB879106 HP10P11T HP Hordeum vulgare subsp. v... 38 0.31
gb|CB879201.1|CB879201 HP11E13T HP Hordeum vulgare subsp. v... 38 0.31
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 357 bits (180), Expect = 3e-097
Identities = 249/272 (91%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 421 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 362
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 361 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 302
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 301 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 242
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgac 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 241 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccac 182
Query: 546 gagcaccgccaggtacaccgggttggacccct 577
||||| || | |||||||||||| |||||||
Sbjct: 181 cagcacggcgaagtacaccgggttcgacccct 150
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 357 bits (180), Expect = 3e-097
Identities = 249/272 (91%)
Strand = Plus / Plus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 280 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 339
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 340 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 399
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 400 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 459
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgac 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 460 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccac 519
Query: 546 gagcaccgccaggtacaccgggttggacccct 577
||||| || | |||||||||||| |||||||
Sbjct: 520 cagcacggcgaagtacaccgggttcgacccct 551
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 357 bits (180), Expect = 3e-097
Identities = 249/272 (91%)
Strand = Plus / Plus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 281 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 340
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 341 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 400
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 401 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 460
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgac 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 461 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccac 520
Query: 546 gagcaccgccaggtacaccgggttggacccct 577
||||| || | |||||||||||| |||||||
Sbjct: 521 cagcacggcgaagtacaccgggttcgacccct 552
>gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. vulgare cDNA clone HF11E17
5-PRIME, mRNA sequence
Length = 538
Score = 337 bits (170), Expect = 2e-091
Identities = 227/246 (92%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 259 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 200
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 199 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 140
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 139 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 80
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgac 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 79 ggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccac 20
Query: 546 gagcac 551
|||||
Sbjct: 19 cagcac 14
>gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03D17
5-PRIME, mRNA sequence
Length = 386
Score = 309 bits (156), Expect = 5e-083
Identities = 204/220 (92%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 220 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 161
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 160 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 101
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 100 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 41
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtcgccg 525
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 ggagttggcctccatgaggtccacctgcaccacgtcgccg 1
>gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_K14 5', mRNA sequence
Length = 382
Score = 301 bits (152), Expect = 1e-080
Identities = 200/216 (92%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 216 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 157
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 156 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 97
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 96 gtggccggagtccagccgccagattgatccccacgactcgcgcatcggcgtccacgtacc 37
Query: 486 ggagttggcctccatgaggtccacctgcaccacgtc 521
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggagttggcctccatgaggtccacctgcaccacgtc 1
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 238 bits (120), Expect = 2e-061
Identities = 234/272 (86%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 400 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 341
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 340 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 281
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 280 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 221
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacga 547
||||||||||| | | ||||||||| | |||||||||||| ||||||| |||||| |
Sbjct: 220 agttggcctccttcatgtccacctggatcacgtcgccgtccatgtcctcgtactcgatca 161
Query: 548 gcaccgccaggtacaccgggttggacccctcc 579
|||||||||||||||||| |||||| ||||||
Sbjct: 160 gcaccgccaggtacaccgcgttggagccctcc 129
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 238 bits (120), Expect = 2e-061
Identities = 234/272 (86%)
Strand = Plus / Plus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 346 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 405
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 406 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 465
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 466 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 525
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacga 547
||||||||||| | | ||||||||| | |||||||||||| ||||||| |||||| |
Sbjct: 526 agttggcctccttcatgtccacctggatcacgtcgccgtccatgtcctcgtactcgatca 585
Query: 548 gcaccgccaggtacaccgggttggacccctcc 579
|||||||||||||||||| |||||| ||||||
Sbjct: 586 gcaccgccaggtacaccgcgttggagccctcc 617
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 238 bits (120), Expect = 2e-061
Identities = 234/272 (86%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 281 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 222
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 221 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 162
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 161 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 102
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacga 547
||||||||||| | | ||||||||| | |||||||||||| ||||||| |||||| |
Sbjct: 101 agttggcctccttcatgtccacctggatcacgtcgccgtccatgtcctcgtactcgatca 42
Query: 548 gcaccgccaggtacaccgggttggacccctcc 579
|||||||||||||||||| |||||| ||||||
Sbjct: 41 gcaccgccaggtacaccgcgttggagccctcc 10
>gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. vulgare cDNA clone HM03P13
3-PRIME, mRNA sequence
Length = 442
Score = 212 bits (107), Expect = 1e-053
Identities = 149/163 (91%)
Strand = Plus / Plus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 280 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 339
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 340 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgcctggaggcg 399
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgc 468
|||||||||||||||||||||||| || |||||||||||||||
Sbjct: 400 gtggccggagtccagccgccagattgatccccacgactcgcgc 442
>gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41p01 5', mRNA sequence
Length = 608
Score = 198 bits (100), Expect = 1e-049
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 241 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 182
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 181 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 122
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 121 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 62
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtc 527
||||||||||| | | ||||||||| | ||||||||||||
Sbjct: 61 agttggcctccttcatgtccacctggatcacgtcgccgtc 22
>gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41p01 3', mRNA sequence
Length = 573
Score = 198 bits (100), Expect = 1e-049
Identities = 190/220 (86%)
Strand = Plus / Plus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 352 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 411
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 412 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 471
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 472 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 531
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtc 527
||||||||||| | | ||||||||| | ||||||||||||
Sbjct: 532 agttggcctccttcatgtccacctggatcacgtcgccgtc 571
>gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.B12, mRNA sequence
Length = 808
Score = 180 bits (91), Expect = 3e-044
Identities = 166/191 (86%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 323 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 264
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 263 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 204
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 203 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccg 144
Query: 488 agttggcctcc 498
|||||||||||
Sbjct: 143 agttggcctcc 133
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 180 bits (91), Expect = 3e-044
Identities = 143/159 (89%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 420 gaggcggtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtcc- 478
||||||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||
Sbjct: 645 gaggcggtggccggattccacccgccagattgatccccacgattcgcgcatcggcgtccc 586
Query: 479 acgacccggagttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcga 538
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 585 acgtaccggagttggcctccatgaggtccacctgcaccaagtcgccgtcgccgtcctcgt 526
Query: 539 actcgacgagcaccgccaggtacaccgggttggacccct 577
|||| || ||||| || | |||||||||||| |||||||
Sbjct: 525 actccaccagcacggcgaagtacaccgggttcgacccct 487
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 168 bits (85), Expect = 1e-040
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 430 ccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccggag 489
||||||||||||||| |||| || |||||||||||||||||||||||||||| | ||||
Sbjct: 617 ccggagtccagccgcaagattgatccccacgactcgcgcatcggcgtccacgtacaggag 558
Query: 490 ttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagc 549
|||||||||||||||||||| ||||||| ||||||||||||||| ||| |||| || |||
Sbjct: 557 ttggcctccatgaggtccacttgcaccatgtcgccgtcgccgtcntcgtactccaccagc 498
Query: 550 accgccaggtacaccgggttggacccct 577
|| || | |||||||||||| |||||||
Sbjct: 497 acggcgaagtacaccgggttcgacccct 470
>gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. vulgare cDNA clone HS18N14
3-PRIME, mRNA sequence
Length = 539
Score = 163 bits (82), Expect = 8e-039
Identities = 154/178 (86%)
Strand = Plus / Plus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 358 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 417
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 418 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 477
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgaccc 485
|| |||||||| |||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct: 478 ggttggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccc 535
>gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. vulgare cDNA clone HB06J03
5-PRIME, mRNA sequence
Length = 294
Score = 149 bits (75), Expect = 1e-034
Identities = 102/111 (91%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 131 gtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgaccttgtc 72
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgc 416
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 71 ggccaccagcgtcttgccggactcgttggtgatgcgcatggagaagggcgc 21
>gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. vulgare cDNA clone HS17P08
3-PRIME, mRNA sequence
Length = 518
Score = 145 bits (73), Expect = 2e-033
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 358 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 417
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 418 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 477
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgc 468
|| |||||||| |||||||||||| |||||||||||||||
Sbjct: 478 ggttggagtccatccgccagatggatccccacgactcgcgc 518
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 135 bits (68), Expect = 2e-030
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 432 ggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccggagtt 491
|||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |||||
Sbjct: 737 ggagtccatccgccagatggatccccacgactcgcgcatcgccatccacgaccccgagtt 678
Query: 492 ggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcac 551
||| || | | ||||||||| | |||||||||||| ||||||| |||||| |||||
Sbjct: 677 ggctcccttcatgtccacctggatcacgtcgccgtccatgtcctcgtactcgatcagcac 618
Query: 552 cgccaggtacaccgggttggacccctcc 579
|||||||||||||| |||||| ||||||
Sbjct: 617 cgccaggtacaccgcgttggagccctcc 590
>gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
3-PRIME, mRNA sequence
Length = 505
Score = 127 bits (64), Expect = 4e-028
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 354 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 413
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
|||||||| |||||||||| ||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 414 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaaaggcccctggaggcggt 473
Query: 428 ggccggagtccagccgccagatggacccccac 459
|| |||||||| |||||||||||| ||||||
Sbjct: 474 ggttggagtccatccgccagatggatccccac 505
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 119 bits (60), Expect = 1e-025
Identities = 133/155 (85%), Gaps = 2/155 (1%)
Strand = Plus / Minus
Query: 424 cggtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgac 483
||||| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 661 cggtgcccgaagtcaagcccccagatggatccccacgactcgcgcatcggcgtccacgta 602
Query: 484 ccggagttggcctccatgaggtccacc-tgcaccacgtcgccgtcgccgtcctcgaactc 542
||| |||||| |||||| |||||| || ||||||||||||||||||||||| ||| ||||
Sbjct: 601 ccgaagttgg-ctccattaggtcccccttgcaccacgtcgccgtcgccgtcttcgtactc 543
Query: 543 gacgagcaccgccaggtacaccgggttggacccct 577
| ||||| || | |||||||||||| ||| |||
Sbjct: 542 ccccagcacggcgaagtacaccgggttcgacncct 508
>gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014H23f, mRNA sequence
Length = 696
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 251 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 192
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 191 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 132
Query: 442 cgccagatggacccccacgactc 464
||||||| ||| |||||||||||
Sbjct: 131 cgccagacggagccccacgactc 109
Score = 91.7 bits (46), Expect = 2e-017
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcacc 552
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 69 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 12
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 441 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 382
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 381 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 322
Query: 442 cgccagatggacccccacgactc 464
||||||| ||| |||||||||||
Sbjct: 321 cgccagacggagccccacgactc 299
Score = 95.6 bits (48), Expect = 2e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 259 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 200
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 401 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 342
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 341 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 282
Query: 442 cgccagatggacccccacgactc 464
||||||| ||| |||||||||||
Sbjct: 281 cgccagacggagccccacgactc 259
Score = 95.6 bits (48), Expect = 2e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 219 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 160
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 569 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 510
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 509 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 450
Query: 442 cgccagatggacccccacgactc 464
||||||| ||| |||||||||||
Sbjct: 449 cgccagacggagccccacgactc 427
Score = 95.6 bits (48), Expect = 2e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 387 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 328
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 117 bits (59), Expect = 4e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 332 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 273
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 272 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 213
Query: 442 cgccagatggacccccacgactc 464
||||||| ||| |||||||||||
Sbjct: 212 cgccagacggagccccacgactc 190
Score = 95.6 bits (48), Expect = 2e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 150 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 91
>gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019J09f, mRNA sequence
Length = 564
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 137 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 78
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 77 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 18
Query: 442 cgccagatggaccccca 458
||||||| ||| |||||
Sbjct: 17 cgccagacggagcccca 1
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 448 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 389
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 388 catgtacaccgcgttggacccctcctc 362
Score = 58.0 bits (29), Expect = 3e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 432 ggagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
|||||| || ||||||||| | |||||||||||||||||| ||||||||
Sbjct: 526 ggagtcgaggcgccagatgaatccccacgactcgcgcatccgcgtccac 478
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 262 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 203
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 202 catgtacaccgcgttggacccctcctc 176
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 454 ccccacgactcgcgcatcggcgtccac 480
|||||||||||||||||| ||||||||
Sbjct: 318 ccccacgactcgcgcatccgcgtccac 292
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 309 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 250
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 249 catgtacaccgcgttggacccctcctc 223
Score = 93.7 bits (47), Expect = 6e-018
Identities = 143/175 (81%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| |||||||||| |||||| |||||||| | |
Sbjct: 513 gtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacgttgcg 454
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
||| || ||||||||||||||||||||| |||||| | |||||| ||||| ||| ||
Sbjct: 453 ggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacg 394
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||| |||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 393 atggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 339
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 469 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 410
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 409 catgtacaccgcgttggacccctcctc 383
Score = 73.8 bits (37), Expect = 6e-012
Identities = 92/109 (84%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 373 agcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccg 432
||||||||||||||||||||| |||||| | |||||| ||||| ||| || ||| |
Sbjct: 607 agcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacgatggttg 548
Query: 433 gagtccagccgccaga-tggacccccacgactcgcgcatcggcgtccac 480
||||| || ||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 547 gagtcgaggcgccagaatggatccccacgactcgcgcatccgcgtccac 499
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 129 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 70
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 69 catgtacaccgcgttggacccctcctc 43
Score = 93.7 bits (47), Expect = 6e-018
Identities = 143/175 (81%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| |||||||||| |||||| |||||||| | |
Sbjct: 333 gtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacgttgcg 274
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
||| || ||||||||||||||||||||| |||||| | |||||| ||||| ||| ||
Sbjct: 273 ggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacg 214
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||| |||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 213 atggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 159
>gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_G24 5', mRNA sequence
Length = 535
Score = 101 bits (51), Expect = 2e-020
Identities = 108/127 (85%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 133 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 74
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccggagtccagc 441
|||||||||||| |||||| | |||||| ||||| |||||||||| |||||| ||
Sbjct: 73 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtggttggagtcgagg 14
Query: 442 cgccaga 448
|||||||
Sbjct: 13 cgccaga 7
>gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_L19 5', mRNA sequence
Length = 485
Score = 101 bits (51), Expect = 2e-020
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct: 108 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgacattgttgg 49
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaa 410
|||||||| |||||||||| ||| |||||||||||| ||||||
Sbjct: 48 ccaccagcttcttgccggagtcgctggtgatgcgcatggagaa 6
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 413 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 472
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 473 catgtacaccgcgttggacccctcctc 499
Score = 93.7 bits (47), Expect = 6e-018
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| |||||||||| |||||| |||||||| | |
Sbjct: 209 gtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacgttgcg 268
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
||| || ||||||||||||||||||||| |||||| | |||||| ||||| ||| ||
Sbjct: 269 ggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacg 328
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||| |||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 329 atggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 383
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 552 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 493
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 492 catgtacaccgcgttggacccctcctc 466
Score = 54.0 bits (27), Expect = 5e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 446 agatggacccccacgactcgcgcatcggcgtccac 480
||||||| |||||||||||||||||| ||||||||
Sbjct: 616 agatggatccccacgactcgcgcatccgcgtccac 582
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 101 bits (51), Expect = 2e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 504 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 445
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 444 catgtacaccgcgttggacccctcctc 418
Score = 81.8 bits (41), Expect = 2e-014
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 373 agcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccg 432
|||||||| |||||||||||| |||||| | |||||| ||||| ||| || ||| |
Sbjct: 641 agcgtcttnccggactcgttgcggatgcggatggagaatggcgcctggagacgatggttg 582
Query: 433 gagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 581 gagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 534
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 99.6 bits (50), Expect = 1e-019
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 496 tccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgcc 555
||||||||||| ||||||||||||||||||||||||| |||| |||| || || | ||||
Sbjct: 620 tccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgcc 561
Query: 556 aggtacaccgggttggacccctcctc 581
| |||||||| |||||||||||||||
Sbjct: 560 atgtacaccgcgttggacccctcctc 535
Score = 38.2 bits (19), Expect = 0.31
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 444 ccagatggacccccacgactcgcgcat 470
||||||||| |||||||||||| ||||
Sbjct: 689 ccagatggatccccacgactcgggcat 663
>gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D14
5-PRIME, mRNA sequence
Length = 606
Score = 97.6 bits (49), Expect = 4e-019
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 341 cccagttggccgggatgacctggttggccaccagcgtcttgccggactcgttggtgatgc 400
|||||| ||| ||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 326 cccagtcggcggggatgacctggtcggcgacgagcgtcttgccggactcgttggtgatgc 267
Query: 401 gcagggagaaggg 413
|||| ||||||||
Sbjct: 266 gcagcgagaaggg 254
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 504 gtccacctgcaccacgtcgccgtcgccgtcctcgaactc 542
||||||||| |||||||||||||||||| |||| ||||
Sbjct: 127 gtccacctggtccacgtcgccgtcgccgttctcgtactc 89
>gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. vulgare cDNA clone HX04D14
3-PRIME, mRNA sequence
Length = 472
Score = 97.6 bits (49), Expect = 4e-019
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 341 cccagttggccgggatgacctggttggccaccagcgtcttgccggactcgttggtgatgc 400
|||||| ||| ||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 281 cccagtcggcggggatgacctggtcggcgacgagcgtcttgccggactcgttggtgatgc 340
Query: 401 gcagggagaaggg 413
|||| ||||||||
Sbjct: 341 gcagcgagaaggg 353
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 95.6 bits (48), Expect = 2e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 270 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 211
>gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O10f, mRNA sequence
Length = 689
Score = 95.6 bits (48), Expect = 2e-018
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 417 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 476
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtgg 429
|||||||||||| |||||| | |||||| ||||| ||||||||||
Sbjct: 477 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtgg 524
Score = 73.8 bits (37), Expect = 6e-012
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 498 catgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactc 542
||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 602 catgaggtccacctgcaccacgtcgccgtcgccctcctcgtactc 646
>gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_H14 5', mRNA sequence
Length = 341
Score = 95.6 bits (48), Expect = 2e-018
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 108 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 49
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtgg 429
|||||||||||| |||||| | |||||| ||||| ||||||||||
Sbjct: 48 ccggactcgttgcggatgcggatggagaatggcgcctggaggcggtgg 1
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 93.7 bits (47), Expect = 6e-018
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| || |||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 272 ctccatgaggtcgacgtgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 213
Query: 555 caggtacaccgggttggacccctcctc 581
|| |||||||| |||||||||||||||
Sbjct: 212 catgtacaccgcgttggacccctcctc 186
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 442 cgccagatggacccccacgactcgcgcatcggcgtccac 480
||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 340 cgccagatggatccccacgacttgagcatcggtgtccac 302
>gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052C12F1, mRNA sequence
Length = 300
Score = 93.7 bits (47), Expect = 6e-018
Identities = 143/175 (81%)
Strand = Plus / Minus
Query: 306 gtactggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggtt 365
|||||||| |||||| |||||| |||||||||| |||||| |||||||| | |
Sbjct: 185 gtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacgttgcg 126
Query: 366 ggccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcg 425
||| || ||||||||||||||||||||| |||||| | |||||| ||||| ||| ||
Sbjct: 125 ggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacg 66
Query: 426 gtggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||| |||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 65 atggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 11
>gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26l19 3', mRNA sequence
Length = 527
Score = 93.7 bits (47), Expect = 6e-018
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 427 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 486
Query: 382 ccggactcgttggtgatgcgcagggagaagggcgc 416
|||||||||||| |||||| | |||||| |||||
Sbjct: 487 ccggactcgttgcggatgcggatggagaatggcgc 521
>gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. vulgare cDNA clone HF25K12
5-PRIME, mRNA sequence
Length = 281
Score = 89.7 bits (45), Expect = 9e-017
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 89 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 30
Query: 555 caggtacaccgggttggaccc 575
|| |||||||| |||||||||
Sbjct: 29 catgtacaccgcgttggaccc 9
Score = 87.7 bits (44), Expect = 4e-016
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 373 agcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccg 432
||||||||||||||||||||| |||||| | |||||| ||||| ||| || ||| |
Sbjct: 226 agcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacgatggttg 167
Query: 433 gagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 166 gagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 119
>gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02O05u 3',
mRNA sequence
Length = 490
Score = 87.7 bits (44), Expect = 4e-016
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 406 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 465
Query: 382 ccggactcgttg 393
||||||||||||
Sbjct: 466 ccggactcgttg 477
>gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. vulgare cDNA clone HA14H15
5-PRIME, mRNA sequence
Length = 482
Score = 87.7 bits (44), Expect = 4e-016
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 322 cggtagtaggtgttgggaacccagttggccgggatgacctggttggccaccagcgtcttg 381
|||||| |||||||||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 399 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggcgacgagcgtcttg 458
Query: 382 ccggactcgttg 393
||||||||||||
Sbjct: 459 ccggactcgttg 470
>gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60N21
5-PRIME, mRNA sequence
Length = 222
Score = 87.7 bits (44), Expect = 4e-016
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 373 agcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggtggccg 432
||||||||||||||||||||| |||||| | |||||| ||||| ||| || ||| |
Sbjct: 206 agcgtcttgccggactcgttgcggatgcggatggagaatggcgcctggagacgatggttg 147
Query: 433 gagtccagccgccagatggacccccacgactcgcgcatcggcgtccac 480
||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 146 gagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 99
Score = 73.8 bits (37), Expect = 6e-012
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 495 ctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacgagcaccgc 554
|||||||||||| ||||||||||||||||||||||||| |||| |||| || || | |||
Sbjct: 69 ctccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgc 10
Query: 555 caggtacac 563
|| ||||||
Sbjct: 9 catgtacac 1
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,032
Number of Sequences: 312970
Number of extensions: 99032
Number of successful extensions: 34128
Number of sequences better than 0.5: 137
Number of HSP's better than 0.5 without gapping: 136
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33903
Number of HSP's gapped (non-prelim): 209
length of query: 582
length of database: 175,134,539
effective HSP length: 19
effective length of query: 563
effective length of database: 169,188,109
effective search space: 95252905367
effective search space used: 95252905367
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)