BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.3
(1600 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 607 e-172
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 555 e-156
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 555 e-156
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 553 e-156
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 537 e-151
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 484 e-135
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 468 e-130
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 460 e-128
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 452 e-125
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 450 e-125
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 442 e-122
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 438 e-121
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 438 e-121
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 420 e-116
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 398 e-109
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 381 e-104
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 381 e-104
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 377 e-103
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 373 e-101
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 373 e-101
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 361 5e-098
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 357 7e-097
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 345 3e-093
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 341 4e-092
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 341 4e-092
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 337 7e-091
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 333 1e-089
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 331 4e-089
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 323 1e-086
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 323 1e-086
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 323 1e-086
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 323 1e-086
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 313 1e-083
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 299 1e-079
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 295 2e-078
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 291 4e-077
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 289 1e-076
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 287 6e-076
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 287 6e-076
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 287 6e-076
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 287 6e-076
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 287 6e-076
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 285 2e-075
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 281 3e-074
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 280 1e-073
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 280 1e-073
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 274 8e-072
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 274 8e-072
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 272 3e-071
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 268 5e-070
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 262 3e-068
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 262 3e-068
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 262 3e-068
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 252 3e-065
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 244 8e-063
gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachi... 242 3e-062
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 232 3e-059
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 228 4e-058
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 226 2e-057
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 224 7e-057
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 224 7e-057
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 224 7e-057
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 216 2e-054
gb|CB882255.1|CB882255 HL01F14w HL Hordeum vulgare subsp. v... 214 7e-054
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 206 2e-051
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 204 7e-051
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 196 2e-048
gb|CA004554.1|CA004554 HS17P08r HS Hordeum vulgare subsp. v... 196 2e-048
gb|BI956518.1|BI956518 HVSMEn0003O09f Hordeum vulgare rachi... 194 6e-048
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 192 2e-047
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 190 1e-046
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 186 2e-045
gb|CA004842.1|CA004842 HS18N14r HS Hordeum vulgare subsp. v... 186 2e-045
gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. v... 180 9e-044
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 176 1e-042
gb|BF257516.2|BF257516 HVSMEf0013C01f Hordeum vulgare seedl... 174 6e-042
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 174 6e-042
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 170 9e-041
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 170 9e-041
gb|BI958795.1|BI958795 HVSMEn0016K11f Hordeum vulgare rachi... 167 1e-039
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 167 1e-039
gb|BI957226.1|BI957226 HVSMEn0008D17f Hordeum vulgare rachi... 165 6e-039
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 165 6e-039
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 165 6e-039
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 165 6e-039
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 165 6e-039
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 165 6e-039
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 161 9e-038
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 151 8e-035
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 149 3e-034
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 149 3e-034
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 149 3e-034
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 149 3e-034
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 147 1e-033
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 147 1e-033
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 147 1e-033
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 147 1e-033
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 145 5e-033
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 145 5e-033
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 145 5e-033
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 145 5e-033
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 145 5e-033
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 145 5e-033
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 145 5e-033
gb|BI954215.1|BI954215 HVSMEm0016K09f Hordeum vulgare green... 143 2e-032
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 143 2e-032
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 141 8e-032
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 137 1e-030
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 137 1e-030
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 137 1e-030
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 137 1e-030
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 137 1e-030
gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. v... 131 8e-029
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 125 5e-027
gb|CA018598.1|CA018598 HV09B16r HV Hordeum vulgare subsp. v... 121 8e-026
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 115 5e-024
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 113 2e-023
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 113 2e-023
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 113 2e-023
gb|BG300504.2|BG300504 HVSMEb0017E15f Hordeum vulgare seedl... 111 7e-023
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 111 7e-023
gb|CK122095.1|CK122095 BES1824101g21 BES1824 Hordeum vulgar... 111 7e-023
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 109 3e-022
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 109 3e-022
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 109 3e-022
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 109 3e-022
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 107 1e-021
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 103 2e-020
gb|BF626539.2|BF626539 HVSMEa0018K23f Hordeum vulgare seedl... 103 2e-020
gb|BG308983.2|BG308983 HVSMEc0001E03f Hordeum vulgare seedl... 103 2e-020
gb|CA018998.1|CA018998 HV10G08r HV Hordeum vulgare subsp. v... 103 2e-020
gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, dro... 101 7e-020
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 101 7e-020
gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedl... 100 3e-019
gb|BQ657386.1|BQ657386 HA08J01u HA Hordeum vulgare subsp. v... 100 3e-019
gb|BU980470.1|BU980470 HA20M02r HA Hordeum vulgare subsp. v... 100 3e-019
gb|BU997723.1|BU997723 HI08N05r HI Hordeum vulgare subsp. v... 100 3e-019
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 94 2e-017
gb|BF254343.3|BF254343 HVSMEf0003L07f Hordeum vulgare seedl... 94 2e-017
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 94 2e-017
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 94 2e-017
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 94 2e-017
gb|CA019202.1|CA019202 HV11D04r HV Hordeum vulgare subsp. v... 94 2e-017
gb|CB858951.1|CB858951 HI08N05w HI Hordeum vulgare subsp. v... 92 7e-017
gb|AJ462525.1|AJ462525 AJ462525 S00002 Hordeum vulgare subs... 90 3e-016
gb|AV836742.1|AV836742 AV836742 K. Sato unpublished cDNA li... 88 1e-015
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 88 1e-015
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 88 1e-015
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 88 1e-015
gb|CB882446.1|CB882446 HL01O04w HL Hordeum vulgare subsp. v... 88 1e-015
gb|BI957319.1|BI957319 HVSMEn0008N17f Hordeum vulgare rachi... 84 2e-014
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 80 3e-013
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 80 3e-013
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 80 3e-013
gb|CA017602.1|CA017602 HV05K21r HV Hordeum vulgare subsp. v... 78 1e-012
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 74 2e-011
gb|CA002220.1|CA002220 HS06N20r HS Hordeum vulgare subsp. v... 70 2e-010
gb|BI956468.1|BI956468 HVSMEn0003I18f Hordeum vulgare rachi... 68 1e-009
gb|AJ436682.1|AJ436682 AJ436682 S00002 Hordeum vulgare subs... 68 1e-009
gb|AJ463502.1|AJ463502 AJ463502 S00002 Hordeum vulgare subs... 68 1e-009
gb|CA016939.1|CA016939 HV05K21u HV Hordeum vulgare subsp. v... 68 1e-009
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 64 2e-008
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 64 2e-008
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 64 2e-008
gb|BQ664448.1|BQ664448 HV03F01u HV Hordeum vulgare subsp. v... 62 6e-008
gb|BF260322.3|BF260322 HVSMEf0021L02f Hordeum vulgare seedl... 60 2e-007
gb|BQ658207.1|BQ658207 HA05E07u HA Hordeum vulgare subsp. v... 60 2e-007
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 58 9e-007
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 58 9e-007
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 58 9e-007
gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DA... 58 9e-007
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 58 9e-007
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 58 9e-007
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 58 9e-007
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 58 9e-007
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 58 9e-007
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 58 9e-007
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 58 9e-007
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 58 9e-007
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 58 9e-007
gb|CB884040.1|CB884040 HM11B07r HM Hordeum vulgare subsp. v... 58 9e-007
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 58 9e-007
gb|CA019031.1|CA019031 HV10I11r HV Hordeum vulgare subsp. v... 56 4e-006
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 56 4e-006
gb|BM443333.2|BM443333 EBro02_SQ003_K03_R root, 3 week, hyd... 52 6e-005
gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachi... 50 2e-004
gb|BG365226.2|BG365226 HVSMEi0001O04f Hordeum vulgare 20 DA... 50 2e-004
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 50 2e-004
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 48 0.001
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 48 0.001
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 48 0.001
gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. v... 48 0.001
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 46 0.004
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 46 0.004
gb|BI776841.2|BI776841 EBpi03_SQ001_B20_R pistil, 4 DPA, no... 46 0.004
gb|BQ762806.1|BQ762806 EBro02_SQ006_L03_R root, 3 week, hyd... 44 0.014
gb|BF255979.2|BF255979 HVSMEf0008G01f Hordeum vulgare seedl... 42 0.056
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 42 0.056
gb|BE214109.3|BE214109 HV_CEb0002E10f Hordeum vulgare seedl... 42 0.056
gb|BQ754260.1|BQ754260 EBca01_SQ003_F16_R carpel, pre-anthe... 42 0.056
gb|BQ763405.1|BQ763405 EBro02_SQ008_D08_R root, 3 week, hyd... 42 0.056
gb|BU979823.1|BU979823 HA17H17r HA Hordeum vulgare subsp. v... 42 0.056
gb|BU981954.1|BU981954 HA25B14r HA Hordeum vulgare subsp. v... 42 0.056
gb|AL507517.1|AL507517 AL507517 Hordeum vulgare Barke devel... 40 0.22
gb|BF620800.2|BF620800 HVSMEc0020O07f Hordeum vulgare seedl... 40 0.22
gb|BI954770.1|BI954770 HVSMEm0019L11f Hordeum vulgare green... 40 0.22
gb|BI954886.1|BI954886 HVSMEm0020E01f Hordeum vulgare green... 40 0.22
gb|BJ458363.1|BJ458363 BJ458363 K. Sato unpublished cDNA li... 40 0.22
gb|CA004293.1|CA004293 HS17C16r HS Hordeum vulgare subsp. v... 40 0.22
gb|CA032711.1|CA032711 HX13P23r HX Hordeum vulgare subsp. v... 40 0.22
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 607 bits (306), Expect = e-172
Identities = 437/481 (90%), Gaps = 1/481 (0%)
Strand = Plus / Minus
Query: 871 gactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 930
|||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 632 gactccatgaggtncacctgcaccacgtcgccgtcgccgtcttgntantccaccagcacc 573
Query: 931 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaac 990
||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 572 gcgaagtagacggggntcgagtactccnccacgtggaacccgatcttgagccccgggaac 513
Query: 991 tcgcacggcaccctg-gtgaactcgatgtcgatgatgccggagtggcggagcttgtcgtt 1049
|| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 512 tcccacggcaccccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgtt 453
Query: 1050 gaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttgga 1109
||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct: 452 gagcccgggctttgcgagcctgccgaacgctgtgccgctgaggtcgaagtggtagggcgc 393
Query: 1110 caccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgg 1169
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 392 caccgggtagtagttcatgtcggtgatgatcaccgtctccgtcctgccggagcaggattg 333
Query: 1170 gtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatgg 1229
|||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 332 gtccttcctgcatctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatgg 273
Query: 1230 ctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgca 1289
|||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 272 ctggttgccgcaggaggtcatggacgcgaacgggtactggttggtgtgcttgaagccgca 213
Query: 1290 cgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggc 1349
|| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct: 212 ggcaccaccgttgtcgtcggggccggcgccattgggctggccgtaccaggtcgccctggc 153
Query: 1350 c 1350
|
Sbjct: 152 c 152
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023C15f,
mRNA sequence
Length = 646
Score = 555 bits (280), Expect = e-156
Identities = 406/448 (90%)
Strand = Plus / Minus
Query: 924 cagcaccgcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcc 983
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 646 cagcaccgcgaagtagacggggttcgagtactcctccacgtggaacccgatcttgagccc 587
Query: 984 cgggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagctt 1043
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 586 cgggaactcgcacggcacccgtgtgaactcgatgtcgatgatgccggagtggcggagcct 527
Query: 1044 gtcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggta 1103
||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 526 gtcgttgagcccgggctttgcgagcctgccgaacgccgtgccgctgaggtcgaagtggta 467
Query: 1104 cttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagca 1163
| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 466 gggcgccaccgggtagtagttcatgtcggtaatgatcaccgtctccgtcctgccggagca 407
Query: 1164 ggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaa 1223
||| ||||||||||||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct: 406 ggattggtccttcctgcatctgatcttgtagcatgagccgcatcccttgccgtccttgaa 347
Query: 1224 caatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaa 1283
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 346 caatggctggttgccgcaggaggtcatggacgcgaacgggtactggttggtgtgcttgaa 287
Query: 1284 tccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggc 1343
||||| || ||||||||| |||||||||||||||| ||||||||||| |||||||| ||
Sbjct: 286 gccgcaggcaccaccgttgtcgtcggggccggcgccattgggctggccataccaggtcgc 227
Query: 1344 ccgggccctctgccaggggccccagtac 1371
|| |||| ||||||||||||||||
Sbjct: 226 cctggccggggtccaggggccccagtac 199
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 555 bits (280), Expect = e-156
Identities = 358/384 (93%)
Strand = Plus / Minus
Query: 871 gactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gactccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 330
Query: 931 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaac 990
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 329 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttgagccccgggaac 270
Query: 991 tcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttg 1050
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 269 tcgcacggcacccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgttg 210
Query: 1051 aggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggac 1110
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 209 agcccgggctttgcgagcctgccgaacgctgtgccgctgaggtcgaagtggtagggcgcc 150
Query: 1111 accgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacggg 1170
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 149 accgggtagtagttcatgtcggtgatgatcaccgtctccgtcctgccggagcaggattgg 90
Query: 1171 tccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggc 1230
||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 89 tccttcctgcatctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatggc 30
Query: 1231 tggttgccgcaggagcccatggac 1254
||||||||||||||| |||||||
Sbjct: 29 tggttgccgcaggaggtcatggac 6
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 662 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 721
|||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct: 589 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 530
Query: 722 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgca 781
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 529 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgga 470
Query: 782 tgcggtggttggtgtccatgcgccagacggagccccaggactc 824
||||||||||| ||| | |||||||||||||||||| |||||
Sbjct: 469 ggcggtggttggagtcgaggcgccagacggagccccacgactc 427
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 553 bits (279), Expect = e-156
Identities = 587/687 (85%), Gaps = 4/687 (0%)
Strand = Plus / Minus
Query: 664 ctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccggg-atgacgtt 722
||||||||||||| |||||||||||||||||||| | |||||| ||| ||||||||
Sbjct: 711 ctgtactggacgatggagcggtagaaggtgttggncctccagtttttnggggatgacgtt 652
Query: 723 gttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgcat 782
| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 651 gcgggcgacgagcgtcttnccggactcgttgcggatgcggatggagaatggcgcctggag 592
Query: 783 gcggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccaccg 842
|| ||||||| ||| | |||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 591 acgatggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccaccg 532
Query: 843 ccccgtcggcgggccgcgcgccgtcttggactccatcaggtccacctgcaccacgtcgcc 902
||| | || || |||| ||| | | ||||||||| ||||| |||||||||||||||||
Sbjct: 531 ccc-gccgccgcgccgtccgcggcc--ggactccatgaggtcgacctgcaccacgtcgcc 475
Query: 903 gtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtactcctccac 962
|||||||| ||||||||||||||| | ||| | ||| || | ||| || |||||||||
Sbjct: 474 gtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccctcctccac 415
Query: 963 gtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcgat 1022
||||||||| | |||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 414 gtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactggatgtcgat 355
Query: 1023 gatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgcagt 1082
|||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||| || ||
Sbjct: 354 gatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgccgaaggcggt 295
Query: 1083 gccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgatcac 1142
||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct: 294 gccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgtgatcatcac 235
Query: 1143 cgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagcaggagcc 1202
||||||| |||||||||||| | | || |||| ||||| ||||||||||| | |||
Sbjct: 234 cgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgtagcatgcgcc 175
Query: 1203 gcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatggacatgaaggg 1262
||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||
Sbjct: 174 gcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggccatgaacgg 115
Query: 1263 gtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccggcgccgtt 1322
|||| |||| || |||||| ||||| ||||| |||||| ||| |||||||||||||||
Sbjct: 114 gtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggccggcgccgtt 55
Query: 1323 gggctggccgtaccaggtggcccgggc 1349
|||| |||||||||||||||||||||
Sbjct: 54 gggcgcgccgtaccaggtggcccgggc 28
>gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H04 5', mRNA sequence
Length = 612
Score = 537 bits (271), Expect = e-151
Identities = 376/411 (91%)
Strand = Plus / Minus
Query: 940 acggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggc 999
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 612 acggggttcgagtactcctccacgtggaacccgatcttgagccccgggaactcgcacggc 553
Query: 1000 accctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggc 1059
|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 552 acccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgttgagcccgggc 493
Query: 1060 ttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtag 1119
|| || |||||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 492 tttgcgagcctgccgaacgctgtgccgctgaggtcgaagtggtagggcgccaccgggtag 433
Query: 1120 tagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctg 1179
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 432 tagttcatgtcggtgatgatcaccgtctccgtcctgccggagcaggattggtccttcctg 373
Query: 1180 caccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccg 1239
|| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 catctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatggctggttgccg 313
Query: 1240 caggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccg 1299
|||||| ||||||| ||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct: 312 caggaggtcatggacgcgaacgggtactggttggtgtgcttgaagccgcaggcaccaccg 253
Query: 1300 ttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggcc 1350
||| |||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 252 ttgtcgtcggggccggcgccattgggctggccgtaccaggtcgccctggcc 202
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 484 bits (244), Expect = e-135
Identities = 522/611 (85%), Gaps = 4/611 (0%)
Strand = Plus / Minus
Query: 717 gacgttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcgg 776
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 gacgttgcgggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgc 564
Query: 777 ctgcatgcggtggttggtgtccatgcgccagac-ggagccccaggactcgcgcatcggcg 835
||| | || ||||||| ||| | |||||||| ||| ||||| |||||||||||| |||
Sbjct: 563 ctggagacgatggttggagtcgaggcgccagaatggatccccacgactcgcgcatccgcg 504
Query: 836 tccaccgccccgtcggcgggccgcgcgccgtcttggactccatcaggtccacctgcacca 895
|||||||||| | || || |||| ||| | | ||||||||| ||||| ||||||||||
Sbjct: 503 tccaccgccc-gccgccgcgccgtccgcggcc--ggactccatgaggtcgacctgcacca 447
Query: 896 cgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtact 955
||||||||||||||| ||||||||||||||| | ||| | ||| || | ||| || ||
Sbjct: 446 cgtcgccgtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccct 387
Query: 956 cctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcga 1015
|||||||||||||||| | |||||| |||||||||||||||| |||||||||||||| ||
Sbjct: 386 cctccacgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactgga 327
Query: 1016 tgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccga 1075
||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||
Sbjct: 326 tgtcgatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgccga 267
Query: 1076 acgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtga 1135
| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 266 aggcggtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgtga 207
Query: 1136 tgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagc 1195
| |||||||||||| |||||||||||| | | || |||| ||||| ||||||||||
Sbjct: 206 tcatcaccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgtagc 147
Query: 1196 aggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatggaca 1255
| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 146 atgcgccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggcca 87
Query: 1256 tgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccgg 1315
|||| |||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||||
Sbjct: 86 tgaacgggtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggccgg 27
Query: 1316 cgccgttgggc 1326
|||||||||||
Sbjct: 26 cgccgttgggc 16
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010D14f,
mRNA sequence
Length = 628
Score = 468 bits (236), Expect = e-130
Identities = 378/424 (89%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 949 gagtactcctcca-cgtggaacccgatcttcaggcccgggaactcgcacggcaccctggt 1007
||||||||||||| |||||||||||||||| || |||||||| ||||||||||||| ||
Sbjct: 624 gagtactcctccaacgtggaacccgatcttgagccccgggaattcgcacggcacccgtgt 565
Query: 1008 gaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccag 1067
|||||||||||||||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 564 gaactcgatgtcgatgatgccggagtggcggagcctgtcgttgagccggggctttgcgag 505
Query: 1068 cctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcat 1127
|||||||||||| |||||| | |||||||||||||| | ||||||||||||||||||
Sbjct: 504 cctgccgaacgccgtgccggtcaggtcgaagtggtagggcgccaccgggtagtagttcat 445
Query: 1128 gtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaat 1187
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||
Sbjct: 444 gtcggtgatgatcaccgtctccgtcctgccggagcaggattggtccttcctgcatctgat 385
Query: 1188 cttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcc 1247
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttgtagcatgagccgcatcccttgccgtccttgaacaatggctggttgccgcaggaggt 325
Query: 1248 catggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtc 1307
||||||| ||| ||||||||||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 324 catggacgcgaacgggtactggttggtgtgcttgaagccgcaggcaccaccgttgtcgtc 265
Query: 1308 ggggccggcgccgttgggctggccgtaccaggtggcccgggccctctgccaggggcccca 1367
|||||||||||| ||||||||||| |||||||| |||| |||| ||||||||||||
Sbjct: 264 ggggccggcgccattgggctggccataccaggtcgccctggccggggtccaggggcccca 205
Query: 1368 gtac 1371
||||
Sbjct: 204 gtac 201
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 460 bits (232), Expect = e-128
Identities = 364/408 (89%)
Strand = Plus / Minus
Query: 964 tggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcgatg 1023
|||||||||||||| || ||| |||||||||||||||||| ||||| ||||||||||||
Sbjct: 594 tggaacccgatcttgagccccaggaactcgcacggcacccgtgtgaattcgatgtcgatg 535
Query: 1024 atgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgcagtg 1083
||||||||||| |||||| |||||||||| |||||||| || |||||||||||||| |||
Sbjct: 534 atgccggagtgccggagcctgtcgttgagcccgggctttgcgagcctgccgaacgccgtg 475
Query: 1084 ccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgatcacc 1143
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 474 ccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtcggtgatgatcacc 415
Query: 1144 gtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagcaggagccg 1203
|||||||||| ||||||||||| ||||||||||||| | ||||||||||| ||||||
Sbjct: 414 gtctccgtcctgccggagcaggattggtccttcctgcatctgatcttgtagcatgagccg 355
Query: 1204 cagcccttgccgtccttgaacaatggctggttgccgcaggagcccatggacatgaagggg 1263
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct: 354 catcccttgccgtccttgaacaatggctggttgccgcaggaggtcatggacgcgaacggg 295
Query: 1264 tactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccggcgccgttg 1323
|||||||||||||||||||| ||||| || ||||||||| |||||||||||||||| |||
Sbjct: 294 tactggttggtgtgcttgaagccgcaggcaccaccgttgtcgtcggggccggcgccattg 235
Query: 1324 ggctggccgtaccaggtggcccgggccctctgccaggggccccagtac 1371
|||||||| |||||||| |||| |||| ||||||||||||||||
Sbjct: 234 ggctggccataccaggtcgccctggccggggtccaggggccccagtac 187
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 452 bits (228), Expect = e-125
Identities = 436/503 (86%), Gaps = 3/503 (0%)
Strand = Plus / Minus
Query: 661 tagctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacg 720
|||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct: 518 tagctgtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacg 459
Query: 721 ttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgc 780
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 458 ttgcgggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgg 399
Query: 781 atgcggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccac 840
| || ||||||| ||| | |||||||| ||| ||||| |||||||||||| ||||||||
Sbjct: 398 agacgatggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 339
Query: 841 cgccccgtcggcgggccgcgcgccgtcttggactccatcaggtccacctgcaccacgtcg 900
||||| | || || ||||| ||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 338 cgccc-gccgccgcgccgcccgcggcc--ggactccatgaggtcgacctgcaccacgtcg 282
Query: 901 ccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtactcctcc 960
|||||||||| ||||||||||||||| | ||| | ||| || | ||| || |||||||
Sbjct: 281 ccgtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccctcctcc 222
Query: 961 acgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcg 1020
||||||||||| | |||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct: 221 acgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactggatgtcg 162
Query: 1021 atgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgca 1080
|||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||| ||
Sbjct: 161 atgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgccgaaggcg 102
Query: 1081 gtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgatc 1140
||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||
Sbjct: 101 gtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgtgatcatc 42
Query: 1141 accgtctccgtccgcccggagca 1163
||||||||| ||||||||||||
Sbjct: 41 accgtctcctgccgcccggagca 19
>gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01B01
3-PRIME, mRNA sequence
Length = 574
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Minus
Query: 992 cgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttga 1051
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 574 cgcacggcacccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgttga 515
Query: 1052 ggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggaca 1111
| |||||||| || |||||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 514 gcccgggctttgcgagcctgccgaacgctgtgccgctgaggtcgaagtggtagggcgcca 455
Query: 1112 ccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggt 1171
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 454 ccgggtagtagttcatgtcggtgatgatcaccgtctccgtcctgccggagcaggattggt 395
Query: 1172 ccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggct 1231
|||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 394 ccttcctgcatctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatggct 335
Query: 1232 ggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacg 1291
|||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct: 334 ggttgccgcaggaggtcatggacgcgaacgggtactggttggtgtgcttgaagccgcagg 275
Query: 1292 cgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggcc 1350
| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 274 caccaccgttgtcgtcggggccggcgccattgggctggccgtaccaggtcgccctggcc 216
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 442 bits (223), Expect = e-122
Identities = 531/634 (83%), Gaps = 3/634 (0%)
Strand = Plus / Minus
Query: 717 gacgttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcgg 776
||||||| ||||| |||| |||| |||||||||||||||||||||||||| || |||
Sbjct: 776 gacgttgcgggcgangagcttcttnccggactcgttgcggatgcggatgganaatggcnc 717
Query: 777 ctgcatgcggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgt 836
||| | || | |||| ||| | || ||||| ||| ||||| |||||| |||| | ||
Sbjct: 716 ctggagacgattnttggagtcgaggccccagatggatccccacgactcgggcatncgngt 657
Query: 837 ccaccgccccgtcggcgggccgcgcgccgtcttggact-ccatcaggtccacctgcacca 895
|||||| |||| || || |||| ||| | | ||| | |||| ||||| ||||||||||
Sbjct: 656 ccaccggcccgccgccgcgccgtccgcggcc--gganttccatgaggtcgacctgcacca 599
Query: 896 cgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtact 955
||||||||||||||| ||||||||||||||| | ||| | ||| || | ||| || ||
Sbjct: 598 cgtcgccgtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccct 539
Query: 956 cctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcga 1015
|||||||||||||||| | |||||| |||||||||||||||| |||||||||||||| ||
Sbjct: 538 cctccacgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactgga 479
Query: 1016 tgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccga 1075
||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||
Sbjct: 478 tgtcgatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgccga 419
Query: 1076 acgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtga 1135
| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 418 aggcggtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgtga 359
Query: 1136 tgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagc 1195
| |||||||||||| |||||||||||| | | || |||| ||||| ||||||||||
Sbjct: 358 tcatcaccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgtagc 299
Query: 1196 aggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatggaca 1255
| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 298 atgcgccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggcca 239
Query: 1256 tgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccgg 1315
|||| |||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||||
Sbjct: 238 tgaacgggtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggccgg 179
Query: 1316 cgccgttgggctggccgtaccaggtggcccgggc 1349
||||||||||| |||||||||||||||||||||
Sbjct: 178 cgccgttgggcgcgccgtaccaggtggcccgggc 145
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 438 bits (221), Expect = e-121
Identities = 498/588 (84%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 733 agcgtcttgccggactcgttgcggatgcggatggagaagggcggctgcatgcggtggttg 792
||||||| ||||||||||||||||||||||||||||| |||| ||| | || ||||||
Sbjct: 585 agcgtctgcccggactcgttgcggatgcggatggagaatggcgcctgtagacgatggttg 526
Query: 793 gtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccaccgccccgtcggc 852
| ||| | |||||||| | | ||||| |||||||||||| ||||||||||||| | || |
Sbjct: 525 gagtcgaggcgccagatgaatccccacgactcgcgcatccgcgtccaccgccc-gccgcc 467
Query: 853 gggccgcgcgccgtcttggactccatcaggtccacctgcaccacgtcgccgtcgccgtcc 912
| |||| ||| | | ||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 466 gcgccgtccgcggcc--ggactccatgaggtcgacctgcaccacgtcgccgtcgccgttc 409
Query: 913 tcgtactccaccagcaccgcgaagtagacggggttcgagtactcctccacgtggaacccg 972
|||||||||||||| | ||| | ||| || | ||| || ||||||||||||||||||
Sbjct: 408 tcgtactccaccaggatcgccatgtacaccgcgttggacccctcctccacgtggaacccc 349
Query: 973 atcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggag 1032
| |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct: 348 accttcagccccgggaactcgcacgccaccctggtgaactggatgtcgatgatgccggcg 289
Query: 1033 tggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgagg 1092
|| ||||||| ||||||| ||||||||||||| ||| ||||||| || ||||||||||||
Sbjct: 288 tgtcggagctcgtcgttgcggccgggcttggcgagcttgccgaaggcggtgccgctgagg 229
Query: 1093 tcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtc 1152
||||||||||| | ||||||||||||||||||||| ||||| |||||||||||| |
Sbjct: 228 tcgaagtggtagggcgccaccgggtagtagttcatgtccgtgatcatcaccgtctcctgc 169
Query: 1153 cgcccggagcaggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttg 1212
||||||||||| | | || |||| ||||| ||||||||||| | |||||||||||||
Sbjct: 168 cgcccggagcacgccttgtgcttcgtgcacttgatcttgtagcatgcgccgcagcccttg 109
Query: 1213 ccgtccttgaacaatggctggttgccgcaggagcccatggacatgaaggggtactggttg 1272
||||||||||||| |||||||||||||||||| ||||| |||||| |||||| ||||
Sbjct: 108 ccgtccttgaacagcggctggttgccgcaggaggtcatggccatgaacgggtaccggttc 49
Query: 1273 gtgtgcttgaatccgcacgcgccaccgttgccgtcggggccggcgccg 1320
|| |||||| ||||| ||||| |||||| ||| ||||| |||||||
Sbjct: 48 acgttcttgaacccgcaagcgccgccgttgtcgtaggggcgggcgccg 1
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 438 bits (221), Expect = e-121
Identities = 459/536 (85%), Gaps = 3/536 (0%)
Strand = Plus / Minus
Query: 814 ccccaggactcgcgcatcggcgtccaccgccccgtcggcgggccgcgcgccgtcttggac 873
||||| |||||||||||| ||||||||||||| | || || |||| ||| | | ||||
Sbjct: 608 ccccacgactcgcgcatccgcgtccaccgccc-gccgccgcgccgtccgcggcc--ggac 552
Query: 874 tccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcg 933
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 551 tccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgcc 492
Query: 934 aagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcg 993
| ||| || | ||| || |||||||||||||||||| | |||||| ||||||||||||
Sbjct: 491 atgtacaccgcgttggacccctcctccacgtggaaccccaccttcagccccgggaactcg 432
Query: 994 cacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgagg 1053
|||| |||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| ||
Sbjct: 431 cacgccaccctggtgaactggatgtcgatgatgccggcgtgtcggagctcgtcgttgcgg 372
Query: 1054 ccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacacc 1113
||||||||||| ||| ||||||| || ||||||||||||||||||||||| | ||||
Sbjct: 371 ccgggcttggcgagcttgccgaaggcggtgccgctgaggtcgaagtggtagggcgccacc 312
Query: 1114 gggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtcc 1173
||||||||||||||||| ||||| |||||||||||| |||||||||||| | | || |
Sbjct: 311 gggtagtagttcatgtccgtgatcatcaccgtctcctgccgcccggagcacgccttgtgc 252
Query: 1174 ttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctgg 1233
||| ||||| ||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct: 251 ttcgtgcacttgatcttgtagcatgcgccgcagcccttgccgtccttgaacagcggctgg 192
Query: 1234 ttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcg 1293
|||||||||||| ||||| |||||| |||||| |||| || |||||| ||||| |||
Sbjct: 191 ttgccgcaggaggtcatggccatgaacgggtaccggttcacgttcttgaacccgcaagcg 132
Query: 1294 ccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggc 1349
|| |||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 131 ccgccgttgtcgtaggggccggcgccgttgggcgcgccgtaccaggtggcccgggc 76
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 420 bits (212), Expect = e-116
Identities = 257/272 (94%)
Strand = Plus / Minus
Query: 871 gactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gactccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 213
Query: 931 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaac 990
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 212 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttgagccccgggaac 153
Query: 991 tcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttg 1050
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 152 tcgcacggcacccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgttg 93
Query: 1051 aggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggac 1110
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 92 agcccgggctttgcgagcctgccgaacgccgtgccgctgaggtcgaagtggtagggcgcc 33
Query: 1111 accgggtagtagttcatgtcggtgatgatcac 1142
||||||||||||||||||||||||||||||||
Sbjct: 32 accgggtagtagttcatgtcggtgatgatcac 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 761 ggatggagaagggcggctgcatgcggtggttggtgtccatgcgccagacggagccccagg 820
||||| |||| |||| ||||| ||||||||| || || |||||||||||||||||| |
Sbjct: 373 ggatgcagaatggcgcctgcagccggtggttgcagttcaggcgccagacggagccccacg 314
Query: 821 actc 824
||||
Sbjct: 313 actc 310
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 398 bits (201), Expect = e-109
Identities = 246/261 (94%)
Strand = Plus / Minus
Query: 871 gactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 202
Query: 931 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaac 990
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 201 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttgagccccgggaac 142
Query: 991 tcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttg 1050
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 141 tcgcacggcacccgtgtgaactcgatgtcgatgatgccggagtggcggagcctgtcgttg 82
Query: 1051 aggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggac 1110
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 81 agcccgggctttgcgagcctgccgaacgccgtgccgctgaggtcgaagtggtagggcgcc 22
Query: 1111 accgggtagtagttcatgtcg 1131
|||||||||||||||||||||
Sbjct: 21 accgggtagtagttcatgtcg 1
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 662 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 721
|||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct: 461 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 402
Query: 722 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgca 781
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 401 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgga 342
Query: 782 tgcggtggttggtgtccatgcgccagacggagccccaggactc 824
||||||||||| ||| | |||||||||||||||||| |||||
Sbjct: 341 ggcggtggttggagtcgaggcgccagacggagccccacgactc 299
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 381 bits (192), Expect = e-104
Identities = 345/396 (87%)
Strand = Plus / Minus
Query: 954 ctcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactc 1013
|||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||
Sbjct: 688 ctcctccacgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactg 629
Query: 1014 gatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgcc 1073
||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||
Sbjct: 628 gatgtcgatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgcc 569
Query: 1074 gaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggt 1133
||| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 568 gaaggcggtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgt 509
Query: 1134 gatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgta 1193
||| |||||||||||| |||||||||||| | | || |||| ||||| ||||||||
Sbjct: 508 gatcatcaccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgta 449
Query: 1194 gcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatgga 1253
||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 448 gcatgcgccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggc 389
Query: 1254 catgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggcc 1313
|||||| |||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||
Sbjct: 388 catgaacgggtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggcc 329
Query: 1314 ggcgccgttgggctggccgtaccaggtggcccgggc 1349
||||||||||||| |||||||||||||||||||||
Sbjct: 328 ggcgccgttgggcgcgccgtaccaggtggcccgggc 293
>gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
5-PRIME, mRNA sequence
Length = 648
Score = 381 bits (192), Expect = e-104
Identities = 345/396 (87%)
Strand = Plus / Minus
Query: 954 ctcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactc 1013
|||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||
Sbjct: 642 ctcctccacgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactg 583
Query: 1014 gatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgcc 1073
||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||
Sbjct: 582 gatgtcgatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgcc 523
Query: 1074 gaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggt 1133
||| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 522 gaaggcggtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgt 463
Query: 1134 gatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgta 1193
||| |||||||||||| |||||||||||| | | || |||| ||||| ||||||||
Sbjct: 462 gatcatcaccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgta 403
Query: 1194 gcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatgga 1253
||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 402 gcatgcgccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggc 343
Query: 1254 catgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggcc 1313
|||||| |||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||
Sbjct: 342 catgaacgggtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggcc 283
Query: 1314 ggcgccgttgggctggccgtaccaggtggcccgggc 1349
||||||||||||| |||||||||||||||||||||
Sbjct: 282 ggcgccgttgggcgcgccgtaccaggtggcccgggc 247
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018F10f,
mRNA sequence
Length = 669
Score = 377 bits (190), Expect = e-103
Identities = 406/478 (84%)
Strand = Plus / Minus
Query: 868 ttggactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagc 927
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 574 ttggcctccatgaggtccacctgcaccaagtcgccgtcgccgtcctcgtactccaccagc 515
Query: 928 accgcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccggg 987
|| |||||||| || |||||||| || |||||||||||| | ||| || || |||
Sbjct: 514 acggcgaagtacaccgggttcgacccctgctccacgtggaaggtcaccttgagaccaggg 455
Query: 988 aactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcg 1047
|||||||||||||| || |||||| ||||||||||||||||||||| |||||||| |||
Sbjct: 454 aactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttctcg 395
Query: 1048 ttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttg 1107
|||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct: 394 ctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttg 335
Query: 1108 gacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggac 1167
| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 334 gcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcaggac 275
Query: 1168 gggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaat 1227
|||| || ||||||| |||| ||||||||||||||| |||||||| |||||||| |
Sbjct: 274 tggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaagatg 215
Query: 1228 ggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccg 1287
|||| ||||||||| || |||||| |||||||||||||||||||| |||||| |||
Sbjct: 214 ggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaacccg 155
Query: 1288 cacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
||||| ||||||| | | ||||||||| || ||||| |||||||||||||||||
Sbjct: 154 cacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 97
>gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0005N13f, mRNA sequence
Length = 798
Score = 373 bits (188), Expect = e-101
Identities = 372/432 (86%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 941 cggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggca 1000
|||||||| ||||||| | || ||||| || |||||| || |||||||| | |||||||
Sbjct: 621 cggggttcaagtactctttcatgtggatcctgatcttgagccccgggaattggcacggcc 562
Query: 1001 ccctg-gtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggc 1059
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tccggtgtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgagcccgggt 502
Query: 1060 ttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtag 1119
|| | ||| |||||||||| || ||| ||||||| ||||||| | | ||||||||
Sbjct: 501 tttggtagcttgccgaacgccgttccgttgaggtcatagtggtagggcgcccccgggtag 442
Query: 1120 tagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctg 1179
||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct: 441 tagttcatgtcggtgatgatccccgtctccgtcctgccggagcaggattggtccttcctg 382
Query: 1180 caccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccg 1239
|| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 catctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatggctggttgccg 322
Query: 1240 caggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccg 1299
|||||| ||||||| ||| ||||||||||||||||||||||| ||||| || || |||
Sbjct: 321 caggaggtcatggacgcgaacgggtactggttggtgtgcttgaagccgcaggcacctccg 262
Query: 1300 ttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggccctctgccag 1359
||| |||||||||||||||| ||||||||||| |||||||| |||| |||| ||||
Sbjct: 261 ttgtcgtcggggccggcgccattgggctggccataccaggtcgccctggccggggtccag 202
Query: 1360 gggccccagtac 1371
||||||||||||
Sbjct: 201 gggccccagtac 190
>gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P06
5-PRIME, mRNA sequence
Length = 495
Score = 373 bits (188), Expect = e-101
Identities = 344/396 (86%)
Strand = Plus / Minus
Query: 954 ctcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactc 1013
|||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||
Sbjct: 491 ctcctccacgtggaaccccaccttcagctccgggaactcgcacgccaccctggtgaactg 432
Query: 1014 gatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgcc 1073
||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||
Sbjct: 431 gatgtcgatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgcc 372
Query: 1074 gaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggt 1133
||| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 371 gaaggcggtgccgctgaggtcgaagtggtagggcgccaccgggtagtagttcatgtccgt 312
Query: 1134 gatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgta 1193
||| |||||||||||| |||||||||||| | | || |||| ||||| ||||||||
Sbjct: 311 gatcatcaccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgta 252
Query: 1194 gcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatgga 1253
||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 251 gcatgcgccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggc 192
Query: 1254 catgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggcc 1313
|||||| |||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||
Sbjct: 191 catgaacgggtaccggttcacgttcttgaacccgcaagcgcccccgttgtcgtaggggcc 132
Query: 1314 ggcgccgttgggctggccgtaccaggtggcccgggc 1349
||||||||||||| |||||||||||||||||||||
Sbjct: 131 ggcgccgttgggcgcgccgtaccaggtggcccgggc 96
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016J13f,
mRNA sequence
Length = 656
Score = 361 bits (182), Expect = 5e-098
Identities = 393/464 (84%)
Strand = Plus / Minus
Query: 882 gtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagac 941
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 656 gtccacntgcaccangtcgccgtcgccgtcctcgtactccaccagcacggcgaagtacac 597
Query: 942 ggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggcac 1001
|||||||| || |||||||||||| | ||| || || |||||||||||||||||
Sbjct: 596 cgggttcgacccctgctccacgtggaaggtcaccttgagaccagggaactcgcacggcac 537
Query: 1002 cctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggctt 1061
|| |||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 536 tctcttgaactggatgtcgatgatgccggagtgccggagcttctcgctgaggccgggctt 477
Query: 1062 ggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagta 1121
||||| ||||||||| ||||| || ||||||||||||||||||| |||||||||||
Sbjct: 476 ggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaaccgggtagta 417
Query: 1122 gttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgca 1181
||||||||||||||||| ||||||||||| |||||||||||| |||| || ||||
Sbjct: 416 gttcatgtcggtgatgaccaccgtctccgggttgccggagcaggactggtcgttggtgca 357
Query: 1182 ccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgca 1241
||| |||| ||||||||||||||| |||||||| |||||||| | |||| |||||||||
Sbjct: 356 ccgtatctggtagcaggagccgcatcccttgccatccttgaagatgggctcgttgccgca 297
Query: 1242 ggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgtt 1301
|| |||||| |||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 296 cgatgtcatggaggagaaggggtactggttggtgttcttgaacccgcacgcaccaccgtc 237
Query: 1302 gccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
| | ||||||||| || ||||| |||||||||||||||||
Sbjct: 236 gtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 193
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0005E06f,
mRNA sequence
Length = 796
Score = 357 bits (180), Expect = 7e-097
Identities = 403/478 (84%)
Strand = Plus / Minus
Query: 868 ttggactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagc 927
|||| |||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||
Sbjct: 557 ttggcctccatgaggtccacttgcaccatgtcgccgtcgccgtcntcgtactccaccagc 498
Query: 928 accgcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccggg 987
|| |||||||| || |||||||| || |||||||||||| | ||| || || |||
Sbjct: 497 acggcgaagtacaccgggttcgacccctgctccacgtggaaggtcaccttgagaccaggg 438
Query: 988 aactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcg 1047
|||||||||||||| || |||||| ||||||||||||||||||||| |||||||| |||
Sbjct: 437 aactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttctcg 378
Query: 1048 ttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttg 1107
|||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct: 377 ctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttg 318
Query: 1108 gacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggac 1167
| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 317 gcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcaggac 258
Query: 1168 gggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaat 1227
|||| || ||||||| |||| ||||||||||||||| |||||||| |||||||| |
Sbjct: 257 tggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaagatg 198
Query: 1228 ggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccg 1287
|||| |||||||| |||||||| |||||||||||||||||||| |||||| |||
Sbjct: 197 ggctngttgccgcccccccccatggaggagaaggggtactggttggtgttcttgaacccg 138
Query: 1288 cacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
||||| ||||||| | | ||||||||| || ||||| |||||||||||||||||
Sbjct: 137 cacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 80
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 814 ccccaggactcgcgcatcggcgtccac 840
||||| |||||||||||||||||||||
Sbjct: 593 ccccacgactcgcgcatcggcgtccac 567
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 345 bits (174), Expect = 3e-093
Identities = 211/222 (95%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 871 gactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gactccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcacc 162
Query: 931 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaac 990
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 161 gcgaagtagacggggttcgagtactcctccacgtggaacccgatcttgagccccgggaac 102
Query: 991 tcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttg 1050
||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 101 tcgcacggcacccgtgt-aactcgatgtcgatgatgccggagtggcggagcctgtcgttg 43
Query: 1051 aggccgggcttggccagcctgccgaacgcagtgccgctgagg 1092
|| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 42 agcccgggctttgcgagcctgccgaacgctgtgccgctgagg 1
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 662 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 721
|||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct: 421 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 362
Query: 722 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgca 781
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 361 tgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgga 302
Query: 782 tgcggtggttggtgtccatgcgccagacggagccccaggactc 824
||||||||||| ||| | |||||||||||||||||| |||||
Sbjct: 301 ggcggtggttggagtcgaggcgccagacggagccccacgactc 259
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019F12f,
mRNA sequence
Length = 669
Score = 341 bits (172), Expect = 4e-092
Identities = 392/464 (84%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 882 gtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagac 941
|||||| |||||||||| |||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 669 gtccacttgcaccacgtggccgtcgccgtcctggtactccaccagcacggcgaagtacac 610
Query: 942 ggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggcac 1001
|||||||| || |||||||||||| | ||| || || |||||||||||||||||
Sbjct: 609 cgggttcgacccctgctccacgtggaaggtca-cttgagaccagggaactcgcacggcac 551
Query: 1002 cctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggctt 1061
|| |||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 550 tctcttgaactggatgtcgatgatgccggagtgccggagcttctcgctgaggccgggctt 491
Query: 1062 ggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagta 1121
||||| ||||||||| ||||| || ||||||||||||||||||| |||||||||||
Sbjct: 490 ggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaaccgggtagta 431
Query: 1122 gttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgca 1181
||||||||||||||||| ||||||||||| |||||||||||| |||| || ||||
Sbjct: 430 gttcatgtcggtgatgaccaccgtctccgggttgccggagcaggactggtcgttggtgca 371
Query: 1182 ccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgca 1241
||| |||| ||||||||||||||| |||||||| |||||||| | |||| |||||||||
Sbjct: 370 ccgtatctggtagcaggagccgcatcccttgccatccttgaagatgggctcgttgccgca 311
Query: 1242 ggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgtt 1301
|| |||||| |||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 310 cgatgtcatggaggagaaggggtactggttggtgttcttgaacccgcacgcaccaccgtc 251
Query: 1302 gccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
| | ||||||||| || ||||| |||||||||||||||||
Sbjct: 250 gtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 207
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024K16f,
mRNA sequence
Length = 677
Score = 341 bits (172), Expect = 4e-092
Identities = 395/471 (83%)
Strand = Plus / Minus
Query: 875 ccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcga 934
|||| |||||||||||||||| ||| | ||||||||||| ||||||||||||||| | ||
Sbjct: 677 ccatgaggtccacctgcaccangtcccngtcgccgtcctngtactccaccagcacggnga 618
Query: 935 agtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgc 994
|||| || |||||||| || ||||||||| || | ||| || || ||||||||||
Sbjct: 617 agtacaccgggttcgacccctgctccacgtgnaaggtcaccttgagaccagggaactcgc 558
Query: 995 acggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggc 1054
||||||| || |||||| ||||||||||||||||||||| |||||||| ||| ||||||
Sbjct: 557 acggcactctcttgaactggatgtcgatgatgccggagtgccggagcttctcgctgaggc 498
Query: 1055 cgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccg 1114
|||||||||||| ||||||||| ||||| || ||||||||||||||||||| ||||
Sbjct: 497 cgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaaccg 438
Query: 1115 ggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtcct 1174
|||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
Sbjct: 437 ggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcaggactggtcgt 378
Query: 1175 tcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggt 1234
| ||||||| |||| ||||||||||||||| |||||||| |||||||| | |||| ||
Sbjct: 377 tggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaagatgggctcgt 318
Query: 1235 tgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgc 1294
||||||| || |||||| |||||||||||||||||||| |||||| |||||||| |
Sbjct: 317 tgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaacccgcacgcac 258
Query: 1295 caccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
|||||| | | ||||||||| || ||||| |||||||||||||||||
Sbjct: 257 caccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 207
>gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0019F11f, mRNA sequence
Length = 759
Score = 337 bits (170), Expect = 7e-091
Identities = 336/390 (86%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 961 acgtggaacccgatcttcaggcccgggaa-ctcgcacggcaccctggtgaactcgatgtc 1019
||||||||||| | |||| ||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 696 acgtggaaccccactttcaagcccgggaaactcgcacgccaccctggtgaactggatgtc 637
Query: 1020 gatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgc 1079
||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||| ||
Sbjct: 636 gatgatgccggcgtgtcggagctcgtcgttgcggccgggcttggcgagcttgccgaaggc 577
Query: 1080 agtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgat 1139
|||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 576 ggtgccgctgaggtccaagtggtagggcgccaccgggtagtagttcatgtccgtgatcat 517
Query: 1140 caccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagcagga 1199
|||||||||| |||||||||||| | | || |||| ||||| ||||||||||| |
Sbjct: 516 caccgtctcctgccgcccggagcacgccttgtgcttcgtgcacttgatcttgtagcatgc 457
Query: 1200 gccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatggacatgaa 1259
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 456 gccgcagcccttgccgtccttgaacagcggctggttgccgcaggaggtcatggccatgaa 397
Query: 1260 ggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccggcgcc 1319
|||||| |||| || |||||| ||||| ||||| |||||| ||| ||||||||||||
Sbjct: 396 cgggtaccggttcacgttcttgaacccgcaagcgccgccgttgtcgtaggggccggcgcc 337
Query: 1320 gttgggctggccgtaccaggtggcccgggc 1349
||||||| |||||||||||||||||||||
Sbjct: 336 gttgggcgcgccgtaccaggtggcccgggc 307
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010F11f,
mRNA sequence
Length = 630
Score = 333 bits (168), Expect = 1e-089
Identities = 363/428 (84%)
Strand = Plus / Minus
Query: 873 ctccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgc 932
|||||| |||||||||||||||| || |||||||||||| | ||||||||||||||| |
Sbjct: 627 ctccatgaggtccacctgcaccaagttgccgtcgccgtcttagtactccaccagcacggg 568
Query: 933 gaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactc 992
|||||| || |||||||| || |||||||||||| | ||| || || ||||||||
Sbjct: 567 gaagtacaccgggttcgacccctgctccacgtggaaggtcaccttgagaccagggaactc 508
Query: 993 gcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgag 1052
||||||||| || |||||| ||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 507 gcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttctcgctgag 448
Query: 1053 gccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacac 1112
|||||||||||||| ||||||||| ||||| || ||||||||||||||||||| ||
Sbjct: 447 gccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaac 388
Query: 1113 cgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtc 1172
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct: 387 cgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcaggactggtc 328
Query: 1173 cttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctg 1232
|| ||||||| |||| ||||||||||||||| |||||||| |||||||| | ||||
Sbjct: 327 gttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaagatgggctc 268
Query: 1233 gttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgc 1292
||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||
Sbjct: 267 gttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaacccgcacgc 208
Query: 1293 gccaccgt 1300
|||||||
Sbjct: 207 accaccgt 200
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 331 bits (167), Expect = 4e-089
Identities = 399/474 (84%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 873 ctccatcaggtccacct-gcaccacgtcgccgtcgccgtcctcgtactccaccagcaccg 931
|||||| |||||| ||| |||||||||||||||||||||| ||||||||| ||||||| |
Sbjct: 591 ctccattaggtcccccttgcaccacgtcgccgtcgccgtcttcgtactcccccagcacgg 532
Query: 932 cgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaact 991
||||||| || |||||||| || |||||||||||| | ||| || | |||||||
Sbjct: 531 cgaagtacaccgggttcgacncctgctccacgtggaaggtca-cttgagacaggggaact 473
Query: 992 cgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttga 1051
|||||||||| || |||||| ||||||||||||||||||||| |||||||| ||| |||
Sbjct: 472 cgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttctcgctga 413
Query: 1052 ggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggaca 1111
||||||||||||||| ||||||||| ||||| || ||||||||||||||||||| |
Sbjct: 412 ggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaa 353
Query: 1112 ccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggt 1171
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct: 352 ccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcaggactggt 293
Query: 1172 ccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggct 1231
| || ||||||| |||| ||||||||||||||| |||||||| |||||||| | ||||
Sbjct: 292 cgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaagatgggct 233
Query: 1232 ggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacg 1291
||||||||| || |||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 232 cgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaacccgcacg 173
Query: 1292 cgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggccc 1345
| ||||||| | | ||||||||| || ||||| |||||||||||||||||
Sbjct: 172 caccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggccc 119
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 804 ccagacggagccccaggactcgcgcatcggcgtccac 840
||||| ||| ||||| |||||||||||||||||||||
Sbjct: 641 ccagatggatccccacgactcgcgcatcggcgtccac 605
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 323 bits (163), Expect = 1e-086
Identities = 385/459 (83%)
Strand = Plus / Minus
Query: 882 gtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagac 941
||||||||| | |||||||||||| |||||||||||| | ||||||||| | ||| ||
Sbjct: 665 gtccacctggatcacgtcgccgtccatgtcctcgtactcgatcagcaccgccaggtacac 606
Query: 942 ggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggcac 1001
| ||| ||| |||| |||||||||| |||||| ||||| ||||| | |||||||||
Sbjct: 605 cgcgttggagccctccaccacgtggaagttgatcttgaggccggggaagttgcacggcac 546
Query: 1002 cctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggctt 1061
||| |||||| ||||||||||||||| |||||||||||||| ||||||||||| | |||
Sbjct: 545 cctcctgaactggatgtcgatgatgcccgagtggcggagcttctcgttgaggcccgactt 486
Query: 1062 ggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagta 1121
|||||| |||||| || |||||||| ||||| |||||||||| || |||||||||||
Sbjct: 485 ggccagggcgccgaaggccgtgccgctcaggtcaaagtggtactgggcgaccgggtagta 426
Query: 1122 gttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgca 1181
||||||||||||||| ||||||||||| | ||||||||||| |||| |||||
Sbjct: 425 gttcatgtcggtgatcatcaccgtctcgatgttgccggagcaggagcggtcgccgctgca 366
Query: 1182 ccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgca 1241
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 tcgtatctggtagcaggagccgcagcccttgccgtccttgaacaggggctggttgccgca 306
Query: 1242 ggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgtt 1301
|||| |||||| ||||||||||||||| ||||||||| ||||| ||||| |||||
Sbjct: 305 ggaggtcatggaggagaaggggtactggttcacgtgcttgaagccgcaagcgccgccgtt 246
Query: 1302 gccgtcggggccggcgccgttgggctggccgtaccaggt 1340
| ||||||| ||||||||||||||| |||||||||||
Sbjct: 245 gtcgtcgggcccggcgccgttgggcgctccgtaccaggt 207
Score = 58.0 bits (29), Expect = 9e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 784 cggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcg 832
|||||||||| |||||| ||||||| ||| ||||| |||||||||||||
Sbjct: 745 cggtggttggagtccatccgccagatggatccccacgactcgcgcatcg 697
>gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019E09f,
mRNA sequence
Length = 699
Score = 323 bits (163), Expect = 1e-086
Identities = 380/447 (85%), Gaps = 4/447 (0%)
Strand = Plus / Minus
Query: 942 ggggttcgagtactcctccacgtggaacccg-atcttcaggcccgggaactcgcacggca 1000
||||||||||| ||||||||||||||||| ||||| || ||||||||||||| | ||
Sbjct: 630 ggggttcgagtctccctccacgtggaacccgtatcttgagccccgggaactcgccggcca 571
Query: 1001 ccctggtg-aactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggc 1059
||| | || ||||| |||||||| || | ||||||||||||| |||||||||| ||||||
Sbjct: 570 ccc-gttgtaactcaatgtcgattatccgggagtggcggagcctgtcgttgagcccgggc 512
Query: 1060 ttggccagcctgccgaac-gcagtgccgctgaggtcgaagtggtacttggacaccgggta 1118
|| || ||||||| |||| || |||| | |||||||||||||| | | |||||||
Sbjct: 511 tttgcgagcctgcggaaccgccgtgcggtgaaggtcgaagtggtagggcgcccccgggta 452
Query: 1119 gtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcct 1178
|||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||
Sbjct: 451 gtagttcatgtcggtgatgatcacggtctccgtcttgccggagcaggattggtctttcct 392
Query: 1179 gcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgcc 1238
||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 391 gcatctgatcttgtagcatgagccgcatcccttgccgtccttgaacaatggctggttgcc 332
Query: 1239 gcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccacc 1298
|||| || ||||||| ||| ||||||||||||||||||||||| ||||| || |||||
Sbjct: 331 gcagaaggtcatggacgcgaacgggtactggttggtgtgcttgaagccgcaggcaccacc 272
Query: 1299 gttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggccctctgcca 1358
|||| |||||||||||||||| ||||||||||| |||||||| |||| |||| |||
Sbjct: 271 gttgtcgtcggggccggcgccattgggctggccataccaggtcgccctggccggggtcca 212
Query: 1359 ggggccccagtacacggcggcgtcgct 1385
||||||||||||| || |||||||||
Sbjct: 211 ggggccccagtacttggtggcgtcgct 185
>gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A06
5-PRIME, mRNA sequence
Length = 421
Score = 323 bits (163), Expect = 1e-086
Identities = 304/351 (86%)
Strand = Plus / Minus
Query: 999 caccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccggg 1058
|||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||
Sbjct: 419 caccctggtgaactggatgtcgatgatgccggcgtgtcggagctcgtcgttgcggccggg 360
Query: 1059 cttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggta 1118
|||||| ||| ||||||| || ||||||||||||||||||||||| | |||||||||
Sbjct: 359 cttggcgagcttgccgaaggcggtgccgctgaggtcgaagtggtagggcgccaccgggta 300
Query: 1119 gtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcct 1178
|||||||||||| ||||| |||||||||||| |||||||||||| | | || |||| |
Sbjct: 299 gtagttcatgtccgtgatcatcaccgtctcctgccgcccggagcacgccttgtgcttcgt 240
Query: 1179 gcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgcc 1238
|||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct: 239 gcacttgatcttgtagcatgcgccgcagcccttgccgtccttgaacagcggctggttgcc 180
Query: 1239 gcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccacc 1298
||||||| ||||| |||||| |||||| |||| || |||||| ||||| ||||| ||
Sbjct: 179 gcaggaggtcatggccatgaacgggtaccggttcacgttcttgaacccgcaagcgccgcc 120
Query: 1299 gttgccgtcggggccggcgccgttgggctggccgtaccaggtggcccgggc 1349
|||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 119 gttgtcgtaggggccggcgccgttgggcgcgccgtaccaggtggcccgggc 69
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 323 bits (163), Expect = 1e-086
Identities = 370/439 (84%)
Strand = Plus / Minus
Query: 907 ccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtactcctccacgtgg 966
||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||
Sbjct: 653 ccgtcctcgtactccaccagcacggcgaagtacaccgggttcgacccctgctccacgtgg 594
Query: 967 aacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcgatgatg 1026
|| | ||| || || ||||||||||||||||| || |||||| |||||||||||||
Sbjct: 593 aaggtcaccttgagaccagggaactcgcacggcactctcttgaactggatgtcgatgatg 534
Query: 1027 ccggagtggcggagcttgtcgttgaggccgggcttggccagcctgccgaacgcagtgccg 1086
|||||||| |||||||| ||| |||||||||||||||||| ||||||||| |||||
Sbjct: 533 ccggagtgccggagcttctcgctgaggccgggcttggccatggcgccgaacgcggtgcca 474
Query: 1087 ctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggtgatgatcaccgtc 1146
|| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 473 ctcaggtcgaagtggtacttggcaaccgggtagtagttcatgtcggtgatgaccaccgtc 414
Query: 1147 tccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgtagcaggagccgcag 1206
|||| |||||||||||| |||| || ||||||| |||| |||||||||||||||
Sbjct: 413 tccgggttgccggagcaggactggtcgttggtgcaccgtatctggtagcaggagccgcat 354
Query: 1207 cccttgccgtccttgaacaatggctggttgccgcaggagcccatggacatgaaggggtac 1266
|||||||| |||||||| | |||| ||||||||| || |||||| ||||||||||
Sbjct: 353 cccttgccatccttgaagatgggctcgttgccgcacgatgtcatggaggagaaggggtac 294
Query: 1267 tggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggccggcgccgttgggc 1326
|||||||||| |||||| |||||||| ||||||| | | ||||||||| || |||||
Sbjct: 293 tggttggtgttcttgaacccgcacgcaccaccgtcgtccatggggccggcacccgtgggc 234
Query: 1327 tggccgtaccaggtggccc 1345
|||||||||||||||||
Sbjct: 233 gcgccgtaccaggtggccc 215
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 313 bits (158), Expect = 1e-083
Identities = 318/369 (86%), Gaps = 3/369 (0%)
Strand = Plus / Plus
Query: 661 tagctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacg 720
|||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct: 204 tagctgtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacg 263
Query: 721 ttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgc 780
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 264 ttgcgggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgg 323
Query: 781 atgcggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccac 840
| || ||||||| ||| | |||||||| ||| ||||| |||||||||||| ||||||||
Sbjct: 324 agacgatggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 383
Query: 841 cgccccgtcggcgggccgcgcgccgtcttggactccatcaggtccacctgcaccacgtcg 900
|| |||| || || |||| ||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 384 cg-cccgccgccgcgccgtccgcggcc--ggactccatgaggtcgacctgcaccacgtcg 440
Query: 901 ccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtactcctcc 960
|||||||||| ||||||||||||||| | ||| | ||| || | ||| || |||||||
Sbjct: 441 ccgtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccctcctcc 500
Query: 961 acgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactcgatgtcg 1020
||||||||||| | |||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct: 501 acgtggaaccccaccttcagccccgggaactcgcacgccaccctggtgaactggatgtcg 560
Query: 1021 atgatgccg 1029
|||||||||
Sbjct: 561 atgatgccg 569
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 299 bits (151), Expect = 1e-079
Identities = 328/387 (84%)
Strand = Plus / Minus
Query: 954 ctcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactc 1013
|||| |||||||||| |||||| ||||| ||||| | |||||||||||| ||||||
Sbjct: 599 ctccaccacgtggaagttgatcttgaggccggggaagttgcacggcaccctcttgaactg 540
Query: 1014 gatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgcc 1073
||||||||||||||| |||||||||||||| ||||||||||| | ||||||||| |||
Sbjct: 539 gatgtcgatgatgcccgagtggcggagcttctcgttgaggcccgacttggccagggcgcc 480
Query: 1074 gaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggt 1133
||| || |||||||| ||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 479 gaaggccgtgccgctcaggtcaaagtggtactgggcgaccgggtagtagttcatgtcggt 420
Query: 1134 gatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgta 1193
||| ||||||||||| | ||||||||||| |||| ||||| || |||| |||
Sbjct: 419 gatcatcaccgtctcgatgttgccggagcaggagcggtcgccgctgcatcgtatctggta 360
Query: 1194 gcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatgga 1253
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 359 gcaggagccgcagcccttgccgtccttgaacaggggctggttgccgcaggaggtcatgga 300
Query: 1254 catgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggcc 1313
||||||||||||||| ||||||||| ||||| ||||| |||||| ||||||| ||
Sbjct: 299 ggagaaggggtactggttcacgtgcttgaagccgcaagcgccgccgttgtcgtcgggccc 240
Query: 1314 ggcgccgttgggctggccgtaccaggt 1340
||||||||||||| |||||||||||
Sbjct: 239 ggcgccgttgggcgctccgtaccaggt 213
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020N13f,
mRNA sequence
Length = 630
Score = 295 bits (149), Expect = 2e-078
Identities = 359/429 (83%)
Strand = Plus / Minus
Query: 917 actccaccagcaccgcgaagtagacggggttcgagtactcctccacgtggaacccgatct 976
||||||||||||| || ||||| || |||||||| || |||||||||||| | ||
Sbjct: 630 actccaccagcacggcaaagtacaccgggttcgacccctgctccacgtggaaggtcacct 571
Query: 977 tcaggcccgggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggc 1036
| || || ||||||||||||||||| || |||||| ||||||||||||||||||||| |
Sbjct: 570 tgagaccagggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgcc 511
Query: 1037 ggagcttgtcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcga 1096
||||||| ||| |||||||||||||||||| ||||||||| ||||| || |||||||
Sbjct: 510 ggagcttctcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcga 451
Query: 1097 agtggtacttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcc 1156
|||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 450 agtggtacttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgc 391
Query: 1157 cggagcaggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgt 1216
||||||||||| |||| || ||||||| |||| ||||||||||||||| |||||||| |
Sbjct: 390 cggagcaggactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccat 331
Query: 1217 ccttgaacaatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgt 1276
||||||| | |||| ||||||||| || |||||| ||||||||||||||||||||
Sbjct: 330 ccttgaagatgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgt 271
Query: 1277 gcttgaatccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtacc 1336
|||||| |||||||| ||||||| | | ||||||||| || ||||| ||||||||
Sbjct: 270 tcttgaacccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtacc 211
Query: 1337 aggtggccc 1345
|||||||||
Sbjct: 210 aggtggccc 202
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 291 bits (147), Expect = 4e-077
Identities = 327/387 (84%)
Strand = Plus / Minus
Query: 954 ctcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtgaactc 1013
|||| |||||||||| |||||| ||||| ||||| | |||||||||||| ||||||
Sbjct: 615 ctccaccacgtggaagttgatcttgaggccggggaagttgcacggcaccctcctgaactg 556
Query: 1014 gatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagcctgcc 1073
||||||||||||||| |||||||||||||| ||||||||||| | ||||||||| |||
Sbjct: 555 gatgtcgatgatgcccgagtggcggagcttctcgttgaggcccgacttggccagggcgcc 496
Query: 1074 gaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatgtcggt 1133
||| || |||||||| ||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 495 gaaggccgtgccgctcaggtcaaagtggtactgggcgaccgggtagtagttcatgtcggt 436
Query: 1134 gatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatcttgta 1193
||| ||||||||||| | ||||||||||| |||| ||||| || |||| |||
Sbjct: 435 gatcatcaccgtctcgatgttgccggagcaggagcggtcgccgctgcatcgtatctggta 376
Query: 1194 gcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagcccatgga 1253
|||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct: 375 gcaggagccgcagcccttgccgtccttgaacaggggctggctgccgcaggaggtcatgga 316
Query: 1254 catgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcggggcc 1313
||||||||||||||| ||||||||| ||||| ||||| |||||| ||||||| ||
Sbjct: 315 ggagaaggggtactggttcacgtgcttgaagccgcaagcgccgccgttgtcgtcgggccc 256
Query: 1314 ggcgccgttgggctggccgtaccaggt 1340
||||||||||||| |||||||||||
Sbjct: 255 ggcgccgttgggcgctccgtaccaggt 229
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 289 bits (146), Expect = 1e-076
Identities = 308/362 (85%)
Strand = Plus / Minus
Query: 979 aggcccgggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcgg 1038
||||| ||||| | |||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 539 aggccggggaagttgcacggcaccctcctgaactggatgtcgatgatgcccgagtggcgg 480
Query: 1039 agcttgtcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaag 1098
||||| ||||||||||| | ||||||||| |||||| || |||||||| ||||| |||
Sbjct: 479 agcttctcgttgaggcccgacttggccagggcgccgaaggccgtgccgctcaggtcaaag 420
Query: 1099 tggtacttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccg 1158
||||||| || |||||||||||||||||||||||||| ||||||||||| | |||
Sbjct: 419 tggtactgggcgaccgggtagtagttcatgtcggtgatcatcaccgtctcgatgttgccg 360
Query: 1159 gagcaggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtcc 1218
|||||||| |||| ||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 359 gagcaggagcggtcgccgctgcatcgtatctggtagcaggagccgcagcccttgccgtcc 300
Query: 1219 ttgaacaatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgc 1278
||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct: 299 ttgaacaggggctggttgccgcaggaggtcatggaggagaaggggtactggttcacgtgc 240
Query: 1279 ttgaatccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccag 1338
||||| ||||| ||||| |||||| ||||||| ||||||||||||||| |||||||||
Sbjct: 239 ttgaagccgcaagcgccgccgttgtcgtcgggcccggcgccgttgggcgctccgtaccag 180
Query: 1339 gt 1340
||
Sbjct: 179 gt 178
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021G03f,
mRNA sequence
Length = 682
Score = 287 bits (145), Expect = 6e-076
Identities = 381/457 (83%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 889 tgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttc 948
||||||| ||||| ||||||||||| | ||||| ||||||| |||||||| || |||||
Sbjct: 638 tgcaccaggtcgcggtcgccgtccttg-actcccccagcacggcgaagtacaccgggttg 580
Query: 949 gagtactcctccacgtggaacccgatcttcaggcccgggaactcgcacggcaccctggtg 1008
|| | |||||||||||| | ||| || || ||||||||||||||||| || ||
Sbjct: 579 gacccttgctccacgtggaaggtca-ctttagaccagggaactcgcacggcactctcttg 521
Query: 1009 aactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggccagc 1068
|||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 520 aactggatgtcgatgatgccggagtgccggagcttctcgctgaggccgggcttggccatg 461
Query: 1069 ctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttcatg 1128
||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct: 460 gcgccgaacgcggtgccactcaggtcgaagtggtacttggcaaccgggtagtagttcatg 401
Query: 1129 tcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaatc 1188
|||||||||| ||||||||||| |||||||||||| |||| || ||||||| |||
Sbjct: 400 tcggtgatgaccaccgtctccgggttgccggagcaggactggtcgttggtgcaccgtatc 341
Query: 1189 ttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagccc 1248
| ||||||||||||||| |||||||| |||||||| | |||| ||||||||| || |
Sbjct: 340 tggtagcaggagccgcatcccttgccatccttgaagatgggctcgttgccgcacgatgtc 281
Query: 1249 atggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgtcg 1308
||||| |||||||||||||||||||| |||||| |||||||| ||||||| | | |
Sbjct: 280 atggaggagaaggggtactggttggtgttcttgaacccgcacgcaccaccgtcgtccatg 221
Query: 1309 gggccggcgccgttgggctggccgtaccaggtggccc 1345
|||||||| || ||||| |||||||||||||||||
Sbjct: 220 gggccggcacccgtgggcgcgccgtaccaggtggccc 184
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 287 bits (145), Expect = 6e-076
Identities = 307/361 (85%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct: 565 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttc 506
Query: 1045 tcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtac 1104
||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 505 tcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtac 446
Query: 1105 ttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcag 1164
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 445 ttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcag 386
Query: 1165 gacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaac 1224
||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 385 gactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaag 326
Query: 1225 aatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaat 1284
| |||| ||||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct: 325 atgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaac 266
Query: 1285 ccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcc 1344
|||||||| ||||||| | | ||||||||| || ||||| ||||||||||||||||
Sbjct: 265 ccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggcc 206
Query: 1345 c 1345
|
Sbjct: 205 c 205
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 287 bits (145), Expect = 6e-076
Identities = 307/361 (85%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct: 553 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttc 494
Query: 1045 tcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtac 1104
||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 493 tcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtac 434
Query: 1105 ttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcag 1164
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 433 ttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcag 374
Query: 1165 gacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaac 1224
||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 373 gactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaag 314
Query: 1225 aatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaat 1284
| |||| ||||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct: 313 atgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaac 254
Query: 1285 ccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcc 1344
|||||||| ||||||| | | ||||||||| || ||||| ||||||||||||||||
Sbjct: 253 ccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggcc 194
Query: 1345 c 1345
|
Sbjct: 193 c 193
Score = 52.0 bits (26), Expect = 6e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 882 gtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcgaagtagac 941
|||||| ||||||| || | ||||| ||||||||||||||||||||| | |||||| ||
Sbjct: 655 gtccacatgcaccaggtaccggtcgcggtcctcgtactccaccagcacggtgaagtacac 596
Query: 942 ggggtt 947
|||||
Sbjct: 595 cgggtt 590
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 287 bits (145), Expect = 6e-076
Identities = 307/361 (85%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct: 562 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttc 503
Query: 1045 tcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtac 1104
||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 502 tcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtac 443
Query: 1105 ttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcag 1164
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 442 ttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcag 383
Query: 1165 gacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaac 1224
||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 382 gactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaag 323
Query: 1225 aatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaat 1284
| |||| ||||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct: 322 atgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaac 263
Query: 1285 ccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcc 1344
|||||||| ||||||| | | ||||||||| || ||||| ||||||||||||||||
Sbjct: 262 ccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggcc 203
Query: 1345 c 1345
|
Sbjct: 202 c 202
>gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M109 5-PRIME, mRNA sequence
Length = 345
Score = 287 bits (145), Expect = 6e-076
Identities = 282/328 (85%)
Strand = Plus / Minus
Query: 982 cccgggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagc 1041
|||||||||||||||| | |||||||||||| ||||||||||||||||| ||| ||||||
Sbjct: 341 cccgggaactcgcacgccnccctggtgaactggatgtcgatgatgccggcgtgtcggagc 282
Query: 1042 ttgtcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtgg 1101
| ||||||| ||||||||||||| ||| ||||||| || |||||||||||||||||||||
Sbjct: 281 tcgtcgttgcggccgggcttggcgagcttgccgaaggcggtgccgctgaggtcgaagtgg 222
Query: 1102 tacttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggag 1161
|| | ||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 221 tagggcgccaccgggtagtagttcatgtccgtgatcatcaccgtctcctgccgcccggag 162
Query: 1162 caggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttg 1221
|| | | || |||| ||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 161 cacgccttgtgcttcgtgcacttgatcttgtagcatgcgccgcagcccttgccgtccttg 102
Query: 1222 aacaatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttg 1281
|||| |||||||||||||||||| ||||| |||||| |||||| |||| || ||||
Sbjct: 101 aacagcggctggttgccgcaggaggtcatggccatgaacgggtaccggttcacgttcttg 42
Query: 1282 aatccgcacgcgccaccgttgccgtcgg 1309
|| ||||| ||||| |||||| ||||||
Sbjct: 41 aacccgcaagcgccgccgttgtcgtcgg 14
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 285 bits (144), Expect = 2e-075
Identities = 297/348 (85%)
Strand = Plus / Minus
Query: 993 gcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgag 1052
|||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 574 gcacggcaccctcctgaactggatgtcgatgatgcccgagtggcggagcttctcgttgag 515
Query: 1053 gccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacac 1112
||| | ||||||||| |||||| || |||||||| ||||| |||||||||| || ||
Sbjct: 514 gcccgacttggccagggcgccgaaggccgtgccgctcaggtcaaagtggtactgggcgac 455
Query: 1113 cgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtc 1172
|||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct: 454 cgggtagtagttcatgtcggtgatcatcaccgtctcgatgttgccggagcaggagcggtc 395
Query: 1173 cttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaacaatggctg 1232
||||| || |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 394 gccgctgcatcgtatctggtagcaggagccgcagcccttgccgtccttgaacaggggctg 335
Query: 1233 gttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaatccgcacgc 1292
||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| ||
Sbjct: 334 gttgccgcaggaggtcatggaggagaaggggtactggttcacgtgcttgaagccgcaagc 275
Query: 1293 gccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggt 1340
||| |||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 274 gccgccgttgtcgtcgggcccggcgccgttgggcgctccgtaccaggt 227
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 281 bits (142), Expect = 3e-074
Identities = 308/362 (85%), Gaps = 1/362 (0%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct: 525 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttc 466
Query: 1045 tcg-ttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggta 1103
||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 465 tcgcttgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggta 406
Query: 1104 cttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagca 1163
||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 405 cttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagca 346
Query: 1164 ggacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaa 1223
|||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 345 ggactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaa 286
Query: 1224 caatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaa 1283
| |||| ||||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct: 285 gatgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaa 226
Query: 1284 tccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggc 1343
|||||||| ||||||| | | ||||||||| || ||||| |||||||||||||||
Sbjct: 225 cccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggc 166
Query: 1344 cc 1345
||
Sbjct: 165 cc 164
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020K03f,
mRNA sequence
Length = 679
Score = 280 bits (141), Expect = 1e-073
Identities = 306/361 (84%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| |||||||
Sbjct: 561 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgcgggagcttc 502
Query: 1045 tcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtac 1104
||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 501 tcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtac 442
Query: 1105 ttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcag 1164
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 441 ttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcag 382
Query: 1165 gacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaac 1224
||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 381 gactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaag 322
Query: 1225 aatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaat 1284
| |||| ||||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct: 321 atgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttcttgaac 262
Query: 1285 ccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcc 1344
|||||||| ||||||| | | ||||||||| || ||||| ||||||||||||||||
Sbjct: 261 ccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggcc 202
Query: 1345 c 1345
|
Sbjct: 201 c 201
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020P05f,
mRNA sequence
Length = 615
Score = 280 bits (141), Expect = 1e-073
Identities = 306/361 (84%)
Strand = Plus / Minus
Query: 985 gggaactcgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttg 1044
||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct: 556 gggaactcgcacggcactctcttgaactggatgtcgatgatgccggagtgccggagcttc 497
Query: 1045 tcgttgaggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtac 1104
||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 496 tcgctgaggccgggcttggccatggcgccgaacgcggtgccactcaggtcgaagtggtac 437
Query: 1105 ttggacaccgggtagtagttcatgtcggtgatgatcaccgtctccgtccgcccggagcag 1164
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 436 ttggcaaccgggtagtagttcatgtcggtgatgaccaccgtctccgggttgccggagcag 377
Query: 1165 gacgggtccttcctgcaccgaatcttgtagcaggagccgcagcccttgccgtccttgaac 1224
||| |||| || ||||||| |||| ||||||||||||||| |||||||| ||||||||
Sbjct: 376 gactggtcgttggtgcaccgtatctggtagcaggagccgcatcccttgccatccttgaag 317
Query: 1225 aatggctggttgccgcaggagcccatggacatgaaggggtactggttggtgtgcttgaat 1284
| |||| ||||||||| || |||||| |||||||||||||||||||| |||||
Sbjct: 316 atgggctcgttgccgcacgatgtcatggaggagaaggggtactggttggtgttattgaac 257
Query: 1285 ccgcacgcgccaccgttgccgtcggggccggcgccgttgggctggccgtaccaggtggcc 1344
|||||||| ||||||| | | ||||||||| || ||||| ||||||||||||||||
Sbjct: 256 ccgcacgcaccaccgtcgtccatggggccggcacccgtgggcgcgccgtaccaggtggcc 197
Query: 1345 c 1345
|
Sbjct: 196 c 196
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 274 bits (138), Expect = 8e-072
Identities = 274/317 (86%), Gaps = 3/317 (0%)
Strand = Plus / Minus
Query: 814 ccccaggactcgcgcatcggcgtccaccgccccgtcggcgggccgcgcgccgtcttggac 873
||||| |||||||||||| ||||||||||||| | || || ||||| ||| | | ||||
Sbjct: 318 ccccacgactcgcgcatccgcgtccaccgccc-gccgccgcgccgcccgcggcc--ggac 262
Query: 874 tccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccgcg 933
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 261 tccatgaggtcgacctgcaccacgtcgccgtcgccgttctcgtactccaccaggatcgcc 202
Query: 934 aagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaactcg 993
| ||| || | ||| || |||||||||||||||||| | |||||| ||||||||||||
Sbjct: 201 atgtacaccgcgttggacccctcctccacgtggaaccccaccttcagccccgggaactcg 142
Query: 994 cacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgagg 1053
|||| |||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| ||
Sbjct: 141 cacgccaccctggtgaactggatgtcgatgatgccggcgtgtcggagctcgtcgttgcgg 82
Query: 1054 ccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacacc 1113
||||||||||| ||| ||||||| || ||||||||||||||||||||||| | ||||
Sbjct: 81 ccgggcttggcgagcttgccgaaggcggtgccgctgaggtcgaagtggtagggcgccacc 22
Query: 1114 gggtagtagttcatgtc 1130
|||||||||||||||||
Sbjct: 21 gggtagtagttcatgtc 5
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 274 bits (138), Expect = 8e-072
Identities = 289/337 (85%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 661 tagctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacg 720
|||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct: 338 tagctgtactggacgatggagcggtagaaggtgttgggcctccagttcttggggatgacg 279
Query: 721 ttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgc 780
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 278 ttgcgggcgacgagcgtcttgccggactcgttgcggatgcggatggagaatggcgcctgg 219
Query: 781 atgcggtggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccac 840
| || ||||||| ||| | |||||||| ||| ||||| |||||||||||| ||||||||
Sbjct: 218 agacgatggttggagtcgaggcgccagatggatccccacgactcgcgcatccgcgtccac 159
Query: 841 cgccccgtcggcgggccgcgcgccgtcttggactccatcaggtccacctgcaccacgtcg 900
|| |||| || || ||||| ||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 158 cg-cccgccgccgcgccgcccgcggcc--ggactccatgaggtcgacctgcaccacgtcg 102
Query: 901 ccgtcgccgtcctcgtactccaccagcaccgcgaagtagacggggttcgagtactcctcc 960
|||||||||| ||||||||||||||| | ||| | ||| || | ||| || |||||||
Sbjct: 101 ccgtcgccgttctcgtactccaccaggatcgccatgtacaccgcgttggacccctcctcc 42
Query: 961 acgtggaacccgatcttcaggcccgggaactcgcacg 997
||||||||||| | |||||| ||||||||||||||||
Sbjct: 41 acgtggaaccccaccttcagccccgggaactcgcacg 5
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 272 bits (137), Expect = 3e-071
Identities = 239/273 (87%)
Strand = Plus / Minus
Query: 872 actccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagcaccg 931
||||||| ||||| || |||||||||||||||||||||| ||||||||||||||| | ||
Sbjct: 273 actccatgaggtcgacgtgcaccacgtcgccgtcgccgttctcgtactccaccaggatcg 214
Query: 932 cgaagtagacggggttcgagtactcctccacgtggaacccgatcttcaggcccgggaact 991
| | ||| || | ||| || |||||||||||||||||| | |||||| ||||||||||
Sbjct: 213 ccatgtacaccgcgttggacccctcctccacgtggaaccccaccttcagccccgggaact 154
Query: 992 cgcacggcaccctggtgaactcgatgtcgatgatgccggagtggcggagcttgtcgttga 1051
|||||| |||||||||||||| ||||||||||||||||| ||| ||||||| |||||||
Sbjct: 153 cgcacgccaccctggtgaactggatgtcgatgatgccggcgtgtcggagctcgtcgttgc 94
Query: 1052 ggccgggcttggccagcctgccgaacgcagtgccgctgaggtcgaagtggtacttggaca 1111
||||||||||||| ||| ||||||| || ||||||||||||||||||||||| | ||
Sbjct: 93 ggccgggcttggcgagcttgccgaaggcggtgccgctgaggtcgaagtggtagggcgcca 34
Query: 1112 ccgggtagtagttcatgtcggtgatgatcaccg 1144
||||||||||||||||||||||||| |||||||
Sbjct: 33 ccgggtagtagttcatgtcggtgatcatcaccg 1
Score = 42.1 bits (21), Expect = 0.056
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 801 gcgccagacggagccccaggactcgcgcatcggcgtccaccgccc 845
|||||||| ||| ||||| |||| | ||||||| |||||||||||
Sbjct: 341 gcgccagatggatccccacgacttgagcatcggtgtccaccgccc 297
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 268 bits (135), Expect = 5e-070
Identities = 288/339 (84%)
Strand = Plus / Minus
Query: 1007 tgaactcgatgtcgatgatgccggagtggcggagcttgtcgttgaggccgggcttggcca 1066
|||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 556 tgaactggatgtcgatgatgccggagtgccggagcttctcgctgaggccgggcttggcca 497
Query: 1067 gcctgccgaacgcagtgccgctgaggtcgaagtggtacttggacaccgggtagtagttca 1126
||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct: 496 tggcgccgaacgcggtgccactcaggtcgaagtggtacttggcaaccgggtagtagttca 437
Query: 1127 tgtcggtgatgatcaccgtctccgtccgcccggagcaggacgggtccttcctgcaccgaa 1186
|||||||||||| ||||||||||| |||||||||||| |||| || ||||||| |
Sbjct: 436 tgtcggtgatgaccaccgtctccgggttgccggagcaggactggtcgttggtgcaccgta 377
Query: 1187 tcttgtagcaggagccgcagcccttgccgtccttgaacaatggctggttgccgcaggagc 1246
||| ||||||||||||||| |||||||| |||||||| | |||| ||||||||| ||
Sbjct: 376 tctggtagcaggagccgcatcccttgccatccttgaagatgggctcgttgccgcacgatg 317
Query: 1247 ccatggacatgaaggggtactggttggtgtgcttgaatccgcacgcgccaccgttgccgt 1306
|||||| |||||||||||||||||||| |||||| |||||||| ||||||| | |
Sbjct: 316 tcatggaggagaaggggtactggttggtgttcttgaacccgcacgcaccaccgtcgtcca 257
Query: 1307 cggggccggcgccgttgggctggccgtaccaggtggccc 1345
||||||||| || ||||| |||||||||||||||||
Sbjct: 256 tggggccggcacccgtgggcgcgccgtaccaggtggccc 218
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,021
Number of Sequences: 312970
Number of extensions: 245021
Number of successful extensions: 82734
Number of sequences better than 0.5: 211
Number of HSP's better than 0.5 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81980
Number of HSP's gapped (non-prelim): 526
length of query: 1600
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1581
effective length of database: 169,188,109
effective search space: 267486400329
effective search space used: 267486400329
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)