BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK125269.1|CK125269 BES1824107i19 BES1824 Hordeum vulgar... 414 e-114
gb|AV915784.1|AV915784 AV915784 K. Sato unpublished cDNA li... 301 4e-080
gb|AV915931.1|AV915931 AV915931 K. Sato unpublished cDNA li... 280 1e-073
gb|BU984242.1|BU984242 HF03G06r HF Hordeum vulgare subsp. v... 260 1e-067
gb|AV916763.1|AV916763 AV916763 K. Sato unpublished cDNA li... 238 5e-061
gb|BJ468452.1|BJ468452 BJ468452 K. Sato unpublished cDNA li... 234 7e-060
gb|AV916782.1|AV916782 AV916782 K. Sato unpublished cDNA li... 218 4e-055
gb|CK123944.1|CK123944 BES1824106e04 BES1824 Hordeum vulgar... 192 2e-047
gb|AV920899.1|AV920899 AV920899 K. Sato unpublished cDNA li... 157 1e-036
gb|AV922058.1|AV922058 AV922058 K. Sato unpublished cDNA li... 157 1e-036
gb|AV921048.1|AV921048 AV921048 K. Sato unpublished cDNA li... 143 2e-032
gb|AV922079.1|AV922079 AV922079 K. Sato unpublished cDNA li... 113 2e-023
gb|AJ462078.1|AJ462078 AJ462078 S00002 Hordeum vulgare subs... 100 3e-019
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.056
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 40 0.22
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 40 0.22
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 40 0.22
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 40 0.22
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 40 0.22
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 40 0.22
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 40 0.22
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 40 0.22
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 40 0.22
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 40 0.22
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 40 0.22
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 40 0.22
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 40 0.22
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 40 0.22
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 40 0.22
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 40 0.22
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.22
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 40 0.22
>gb|CK125269.1|CK125269 BES1824107i19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I197 5-PRIME, mRNA sequence
Length = 917
Score = 414 bits (209), Expect = e-114
Identities = 653/801 (81%)
Strand = Plus / Minus
Query: 725 ggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgtatctcagcga 784
||||| ||| |||||||| || ||||| |||| |||||||||||||||||| |||| |||
Sbjct: 807 ggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacctcaacga 748
Query: 785 gcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaagcttcagt 844
|||||| | ||||| |||||||| || ||||||||||| || || | || || ||
Sbjct: 747 gcactcctcatagttcttctggcacccttcacaccagtatcctgatccgagtgcctcggt 688
Query: 845 caccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatgtg 904
|||||||||||| ||||| |||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 687 caccttcttgttgcaggtggtgcaagcgcggtaccacatggtctggtcaggcttgatgtg 628
Query: 905 gcttatgatggcatacagactgaagaaaacaggcttttcctggcccatagcaggatcact 964
||||||| ||||| |||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct: 627 gcttatgttggcacacaggctgaagaaaacaggcttatcctggcccaagttagggtcact 568
Query: 965 ggtgatgtgagacagaaaaactctatcagaatacatggacttgaaaccaccagcgcgtgt 1024
||||||||||||||||||||||| ||||| ||||| || | ||||||||||||| |
Sbjct: 567 tgtgatgtgagacagaaaaactctgtcagagtacattgatctcaaaccaccagcgctgga 508
Query: 1025 ggcacccacttctgcactgattggtgccagtgaagtatctttgccttcagagtcatacca 1084
||||||| | | |||| | || ||||| |||||| | ||||||||||| ||||||||
Sbjct: 507 tgcacccattccagcaccaactgatgccaaggaagtacccttgccttcagattcatacca 448
Query: 1085 ggacttaagattcttagcctcaggcaagtcaggattaatctcgagagtacttctgccaat 1144
|| |||| |||| || ||||||||| || || ||||| | || ||||| |||| |
Sbjct: 447 ggctctaagcttctcagtctcaggcaactctgggttaataacaagtgtactcttgcctac 388
Query: 1145 agttgaaagagacacgccttggaagtcagatacttttaggctctttatcgcaacaacagg 1204
|| || | |||||||||||| |||||||||||||| |||||||| || ||||| | |||
Sbjct: 387 tgtagagacagacacgccttgaaagtcagatactttcaggctcttgattgcaacgatagg 328
Query: 1205 agaactgtcaaccatgtccaaaagctcttggccagtcgtagtagcaagatcattccagag 1264
| | ||||||||||||||| ||||||| ||| || || |||||||||||||| ||
Sbjct: 327 tgcagagtcaaccatgtccaacagctcttcaccaagagtggtggcaagatcattccaaag 268
Query: 1265 agaaatagtaacagttttgccagagtcatctgctacaacaatgtcacgcttcggtattgt 1324
||||| || || || ||| ||||||||||| ||||||||||||||||| || ||||
Sbjct: 267 agaaactgtgacggtcttgtttgagtcatctgcaacaacaatgtcacgctttggaattga 208
Query: 1325 ctcgttgtcaatctttctcctaacactgagtgtgggagatacgctctgaaccacaccaac 1384
||| ||||| ||||| || || | ||| || || || ||||| |||||||| |||||||
Sbjct: 207 ctcattgtcgatcttccttctgatactcagagtaggtgatacactctgaacaacaccaat 148
Query: 1385 aatatctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggtt 1444
|||||||| | |||||||||||| || ||||| || ||| ||||||||| |||| |||
Sbjct: 147 gatatctactaactccctgccaccaacatatggccccagcatatcaatcttaacaaagtt 88
Query: 1445 gtattgcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtt 1504
||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||
Sbjct: 87 gtattgcactggtggaatgaaagattccccctcagcttcttcaacaacagcattctcatt 28
Query: 1505 tagtgacaactcatagtcatt 1525
|| | || ||||||||||||
Sbjct: 27 cagggtcatctcatagtcatt 7
>gb|AV915784.1|AV915784 AV915784 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p23 5', mRNA sequence
Length = 613
Score = 301 bits (152), Expect = 4e-080
Identities = 453/552 (82%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 582 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 523
Query: 596 gaacaggtgaggaacccagg-tggcttccttgagcttgagaacgtagctgtcgtccccct 654
||||||||| |||||||||| |||||||||| |||||||| | | |||| || ||||
Sbjct: 522 gaacaggtggggaacccagggtggcttccttcagcttgagctggaacatgtcatcgccct 463
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
||||||| |||||||||||||| | || || |||||||| | ||| |||| || || |
Sbjct: 462 cctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggt 403
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||| | ||||| ||| |||||||| || ||||| |||| |||||||||||||||||
Sbjct: 402 cattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgt 343
Query: 775 atctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaa 834
| |||| ||||||||| | ||||| |||||||| || ||||||||||| || || |
Sbjct: 342 acctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgatccga 283
Query: 835 aagcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcag 894
|| || |||||||||||||| ||||| |||||||| ||||||||||| |||| ||||
Sbjct: 282 gtgcctcggtcaccttcttgttgcaggtggtgcaagcgcggtaccacatggtctggtcag 223
Query: 895 gcttgatgtggcttatgatggcatacagactgaagaaaacaggcttttcctggcccatag 954
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 222 gcttgatgtggcttatgttggcacacaggctgaagaaaacaggcttatcctggcccaagt 163
Query: 955 caggatcactggtgatgtgagacagaaaaactctatcagaatacatggacttgaaaccac 1014
||| ||||| ||||||||||||||||||||||| ||||| ||||| || | |||||||
Sbjct: 162 tagggtcacttgtgatgtgagacagaaaaactctgtcagagtacattgatctcaaaccac 103
Query: 1015 cagcgcgtgtggcacccacttctgcactgattggtgccagtgaagtatctttgccttcag 1074
|||||| | ||||||| | | |||| | || ||||| |||||| | ||||||||||
Sbjct: 102 cagcgctggatgcacccattccagcaccaactgatgccaaggaagtacccttgccttcag 43
Query: 1075 agtcataccagg 1086
| ||||||||||
Sbjct: 42 attcataccagg 31
>gb|AV915931.1|AV915931 AV915931 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16l01 5', mRNA sequence
Length = 605
Score = 280 bits (141), Expect = 1e-073
Identities = 490/605 (80%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 852 ttgttacaggtcgtgcaagcacggtaccacatattctgatcaggcttgatgtggcttatg 911
||||| ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct: 605 ttgttgcaggtggtgcaagcgcggtaccacatggtctggtcaggcttgatgtggcttatg 546
Query: 912 atggcatacaga-ctgaagaaaacaggcttttcctggcccatagcaggatcactggtgat 970
||||| |||| ||||||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 545 ttggcacacagggctgaagaaaacaggcttatcctggcccaagttagggtcacttgtgat 486
Query: 971 gtgagacagaaaaactctatcagaatacatggacttgaaaccaccagcgcgtgtggcacc 1030
|||||||||||||||||| ||||| ||||| || | ||||||||||||| | |||||
Sbjct: 485 gtgagacagaaaaactctgtcagagtacattgatctcaaaccaccagcgctggatgcacc 426
Query: 1031 cacttctgcactgattggtgccagtgaagtatctttgccttcagagtcataccaggactt 1090
|| | | |||| | || ||||| |||||| | ||||||||||| |||||||||| |
Sbjct: 425 cattccagcaccaactgatgccaaggaagtacccttgccttcagattcataccaggctct 366
Query: 1091 aagattcttagcctcaggcaagtcaggattaatctcgagagtacttctgccaatagttga 1150
||| |||| || ||||||||| || || ||||| | || ||||| |||| | || ||
Sbjct: 365 aagcttctcagtctcaggcaactctgggttaataacaagtgtactcttgcctactgtaga 306
Query: 1151 aagagacacgccttggaagtcagatacttttaggctctttatcgcaacaacaggagaact 1210
| |||||||||||| |||||||||||||| |||||||| || ||||| | ||| | |
Sbjct: 305 gacagacacgccttgaaagtcagatactttcaggctcttgattgcaacgataggtgcaga 246
Query: 1211 gtcaaccatgtccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaat 1270
||||||||||||||| ||||||| ||| || || |||||||||||||| |||||||
Sbjct: 245 gtcaaccatgtccaacagctcttcaccaagagtggtggcaagatcattccaaagagaaac 186
Query: 1271 agtaacagttttgccagagtcatctgctacaacaatgtcacgcttcggtattgtctcgtt 1330
|| || || ||| ||||||||||| ||||||||||||||||| || |||| ||| ||
Sbjct: 185 tgtgacggtcttgtttgagtcatctgcaacaacaatgtcacgctttggaattgactcatt 126
Query: 1331 gtcaatctttctcctaacactgagtgtgggagatacgctctgaaccacaccaacaatatc 1390
||| ||||| || || | ||| || || || ||||| |||||||| ||||||| |||||
Sbjct: 125 gtcgatcttccttctgatactcagagtaggtgatacactctgaacaacaccaatgatatc 66
Query: 1391 tacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtattg 1450
||| | |||||||||||| || ||||| || ||| ||||||||| |||| |||||||||
Sbjct: 65 tactaactccctgccaccaacatatggccccagcatatcaatcttaacaaagttgtattg 6
Query: 1451 cactg 1455
|||||
Sbjct: 5 cactg 1
>gb|BU984242.1|BU984242 HF03G06r HF Hordeum vulgare subsp. vulgare cDNA clone HF03G06
5-PRIME, mRNA sequence
Length = 600
Score = 260 bits (131), Expect = 1e-067
Identities = 410/503 (81%)
Strand = Plus / Minus
Query: 1056 gaagtatctttgccttcagagtcataccaggacttaagattcttagcctcaggcaagtca 1115
|||||| | ||||||||||| |||||||||| |||| |||| || ||||||||| ||
Sbjct: 589 gaagtacccttgccttcagattcataccaggctctaagcttctcagtctcaggcaactct 530
Query: 1116 ggattaatctcgagagtacttctgccaatagttgaaagagacacgccttggaagtcagat 1175
|| ||||| | || ||||| |||| | || || | |||||||||||| |||||||||
Sbjct: 529 gggttaataacaagtgtactcttgcctactgtagagacagacacgccttgaaagtcagat 470
Query: 1176 acttttaggctctttatcgcaacaacaggagaactgtcaaccatgtccaaaagctcttgg 1235
||||| |||||||| || ||||| | ||| | | ||||||||||||||| |||||||
Sbjct: 469 actttcaggctcttgattgcaacgataggtgcagagtcaaccatgtccaacagctcttca 410
Query: 1236 ccagtcgtagtagcaagatcattccagagagaaatagtaacagttttgccagagtcatct 1295
||| || || |||||||||||||| ||||||| || || || ||| |||||||||
Sbjct: 409 ccaagagtggtggcaagatcattccaaagagaaactgtgacggtcttgtttgagtcatct 350
Query: 1296 gctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctcctaacactgagt 1355
|| ||||||||||||||||| || |||| ||| ||||| ||||| || || | ||| ||
Sbjct: 349 gcaacaacaatgtcacgctttggaattgactcattgtcgatcttccttctgatactcaga 290
Query: 1356 gtgggagatacgctctgaaccacaccaacaatatctacaagctccctgccaccgacgtat 1415
|| || ||||| |||||||| ||||||| |||||||| | |||||||||||| || |||
Sbjct: 289 gtaggtgatacactctgaacaacaccaatgatatctactaactccctgccaccaacatat 230
Query: 1416 ggtcctagctgatcaatcttgacaaggttgtattgcactggtggaaggaaagtctccccc 1475
|| || ||| ||||||||| |||| |||||||||||||||||||| ||||| ||||||
Sbjct: 229 ggccccagcatatcaatcttaacaaagttgtattgcactggtggaatgaaagattccccc 170
Query: 1476 tctgcttcttcaacaatagcattctcgtttagtgacaactcatagtcatttttgactgtc 1535
|| ||||||||||||| ||||||||| || || | || |||||||||||| | ||| |||
Sbjct: 169 tcagcttcttcaacaacagcattctcattcagggtcatctcatagtcattctggaccgtc 110
Query: 1536 ttgaactgcttgttggcaattct 1558
|||||||||||||| ||||||||
Sbjct: 109 ttgaactgcttgtttgcaattct 87
>gb|AV916763.1|AV916763 AV916763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j02 5', mRNA sequence
Length = 573
Score = 238 bits (120), Expect = 5e-061
Identities = 429/531 (80%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 651 ccctcctctttcctgatccgatcaagctcgtcggcgctgca-gccaatgatcttctccgc 709
||||||||||| |||||||||||||| | || || ||||| ||| | ||| |||| ||
Sbjct: 545 ccctcctcttttctgatccgatcaagattatctgcactgcaagccgacaatcctctctgc 486
Query: 710 atgctcgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccat 769
|| || ||||| | ||||| ||| |||||||| || ||||| |||| ||||||||||||
Sbjct: 485 ttggtcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccat 426
Query: 770 gatgtatctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccaga 829
|||||| |||| ||||||||| | ||||| |||||||| || ||||||||||| ||
Sbjct: 425 gatgtacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctga 366
Query: 830 cccaaaagcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctg 889
|| | || || |||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 365 tccgagtgcctcggtcaccttcttgttgcaggtggtgcaagcgcggtaccacatggtctg 306
Query: 890 atcaggcttgatgtggcttatgatggcatacagactgaagaaaacaggcttttcctggcc 949
||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||
Sbjct: 305 gtcaggcttgatgtggcttatgttggcacacaggctgaagaaaacaggcttatcctggcc 246
Query: 950 catagcaggatcactggtgatgtgagacagaaaaactctatcagaatacatggacttgaa 1009
|| ||| ||||| ||||||||||||||||||||||| ||||| ||||| || | ||
Sbjct: 245 caagttagggtcacttgtgatgtgagacagaaaaactctgtcagagtacattgatctcaa 186
Query: 1010 accaccagcgcgtgtggcacccacttctgcactgattggtgccagtgaagtatctttgcc 1069
||||||||||| | ||||||| | | |||| | || ||||| |||||| | |||||
Sbjct: 185 accaccagcgctggatgcacccattccagcaccaactgatgccaaggaagtacccttgcc 126
Query: 1070 ttcagagtcataccaggacttaagattcttagcctcaggcaagtcaggattaatctcgag 1129
|||||| |||||||||| |||| |||| || ||||||||| || || ||||| | ||
Sbjct: 125 ttcagattcataccaggctctaagcttctcagtctcaggcaactctgggttaataacaag 66
Query: 1130 agtacttctgccaatagttgaaagagacacgccttggaagtcagatacttt 1180
||||| |||| | || || | ||||||||||| ||||||||||||||
Sbjct: 65 tgtactcttgcctactgtagagacagacacgccttnaaagtcagatacttt 15
>gb|BJ468452.1|BJ468452 BJ468452 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38n24 3', mRNA sequence
Length = 739
Score = 234 bits (118), Expect = 7e-060
Identities = 339/412 (82%), Gaps = 1/412 (0%)
Strand = Plus / Plus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 328 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 387
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 655
||||||||| |||||||||||||||||||| |||||||| | | |||| || |||||
Sbjct: 388 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 447
Query: 656 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 715
|||||| |||||||||||||| | || || |||||||| | ||| |||| || || ||
Sbjct: 448 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 507
Query: 716 gttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgta 775
||||| | ||||| ||| |||||||| || ||||| |||| ||||||||||||||||||
Sbjct: 508 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgta 567
Query: 776 tctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaa 835
|||| ||||||||| | ||||| |||||||| || ||||||||||| || || |
Sbjct: 568 cctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgatccgag 627
Query: 836 agcttcagtcacctt-cttgttacaggtcgtgcaagcacggtaccacatattctgatcag 894
|| || |||||||| |||||| ||||| |||||||| ||||||||||| |||| ||||
Sbjct: 628 tgcctcggtcacctttcttgttgcaggtggtgcaagcgcggtaccacatggtctggtcag 687
Query: 895 gcttgatgtggcttatgatggcatacagactgaagaaaacaggcttttcctg 946
||||||||||||||||| ||||| ||| |||||||||||| |||| |||||
Sbjct: 688 gcttgatgtggcttatgttggcacacangctgaagaaaacangcttatcctg 739
>gb|AV916782.1|AV916782 AV916782 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j24 5', mRNA sequence
Length = 532
Score = 218 bits (110), Expect = 4e-055
Identities = 425/530 (80%)
Strand = Plus / Minus
Query: 924 ctgaagaaaacaggcttttcctggcccatagcaggatcactggtgatgtgagacagaaaa 983
||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 530 ctgaagaaaacaggcttatcctggcccaagttagggtcacttgtgatgtgagacagaaaa 471
Query: 984 actctatcagaatacatggacttgaaaccaccagcgcgtgtggcacccacttctgcactg 1043
||||| ||||| ||||| || | ||||||||||||| | ||||||| | | ||||
Sbjct: 470 actctgtcagagtacattgatctcaaaccaccagcgctggatgcacccattccagcacca 411
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcataccaggacttaagattcttagcc 1103
| || ||||| |||||| | ||||||||||| |||||||||| |||| |||| || |
Sbjct: 410 actgatgccaaggaagtacccttgccttcagattcataccaggctctaagcttctcagtc 351
Query: 1104 tcaggcaagtcaggattaatctcgagagtacttctgccaatagttgaaagagacacgcct 1163
|||||||| || || ||||| | || ||||| |||| | || || | ||||||||||
Sbjct: 350 tcaggcaactctgggttaataacaagtgtactcttgcctactgtagagacagacacgcct 291
Query: 1164 tggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatgtcc 1223
|| |||||||||||||| |||||||| || ||||| | ||| | | |||||||||||||
Sbjct: 290 tgaaagtcagatactttcaggctcttgattgcaacgataggtgcagagtcaaccatgtcc 231
Query: 1224 aaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagttttg 1283
|| ||||||| ||| || || |||||||||||||| ||||||| || || || |||
Sbjct: 230 aacagctcttcaccaagagtggtggcaagatcattccaaagagaaactgtgacggtcttg 171
Query: 1284 ccagagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctc 1343
||||||||||| ||||||||||||||||| || |||| ||| ||||| ||||| ||
Sbjct: 170 tttgagtcatctgcaacaacaatgtcacgctttggaattgactcattgtcgatcttcctt 111
Query: 1344 ctaacactgagtgtgggagatacgctctgaaccacaccaacaatatctacaagctccctg 1403
|| | ||| || || || ||||| |||||||| ||||||| |||||||| | |||||||
Sbjct: 110 ctgatactcagagtaggtgatacactctgaacaacaccaatgatatctactaactccctg 51
Query: 1404 ccaccgacgtatggtcctagctgatcaatcttgacaaggttgtattgcac 1453
||||| || ||||| || ||| ||||||||| |||| ||||||||||||
Sbjct: 50 ccaccaacatatggccccagcatatcaatcttaacaaagttgtattgcac 1
>gb|CK123944.1|CK123944 BES1824106e04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E046 5-PRIME, mRNA sequence
Length = 818
Score = 192 bits (97), Expect = 2e-047
Identities = 259/312 (83%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 1248 gcaagatcattcc-agagagaaatagtaacagttttgccagagtcatctgctacaacaat 1306
||||||||||||| | ||||||| || || |||||| ||||||||||| ||||||||
Sbjct: 771 gcaagatcattccaaaagagaaactgtgacggttttgtttgagtcatctgcaacaacaat 712
Query: 1307 gtcacgcttcggtattgtctcgttgtcaatctttctcctaacactgagtgtgggagatac 1366
||||||||| || |||| ||| ||||| ||||| || || | ||| || || || |||||
Sbjct: 711 gtcacgctttggaattgactcattgtcgatcttccttctgatactcagagtaggtgatac 652
Query: 1367 gctctgaaccacaccaacaatatctacaagctccctgccaccgacgtatggtcctagctg 1426
|||||||| |||||| |||||||| | |||||||| ||| || ||||| || |||
Sbjct: 651 actctgaacancaccaatgatatctactaactccctgctaccaacatatggccccagcat 592
Query: 1427 atcaatcttgacaaggttgtattgcactggtggaaggaaagtctccccctctgcttcttc 1486
||||||||| |||| |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 591 atcaatcttaacaaagttgtattgcactggtggaatgaaagattccccctcagcttcttc 532
Query: 1487 aacaatagcattctcgtttagtgacaactcatagtcatttttgactgtcttgaactgctt 1546
||||| ||||||||| || || | || |||||||||||| | ||| ||||||||||||||
Sbjct: 531 aacaacagcattctcattcagggtcatctcatagtcattctggaccgtcttgaactgctt 472
Query: 1547 gttggcaattct 1558
||| ||||||||
Sbjct: 471 gtttgcaattct 460
>gb|AV920899.1|AV920899 AV920899 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p23 3', mRNA sequence
Length = 648
Score = 157 bits (79), Expect = 1e-036
Identities = 211/255 (82%)
Strand = Plus / Plus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 655
||||||||| |||||||||||||||||||| |||||||| | | |||| || |||||
Sbjct: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446
Query: 656 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 715
|||||| |||||||||||||| | || || |||||||| | ||| |||| || || ||
Sbjct: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 506
Query: 716 gttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgta 775
||||| | ||||| ||| |||||||| || ||||| |||| ||||||||||||||||||
Sbjct: 507 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgta 566
Query: 776 tctcagcgagcactc 790
|||| |||||||||
Sbjct: 567 cctcaacgagcactc 581
>gb|AV922058.1|AV922058 AV922058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j02 3', mRNA sequence
Length = 664
Score = 157 bits (79), Expect = 1e-036
Identities = 211/255 (82%)
Strand = Plus / Plus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 353 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 412
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 655
||||||||| |||||||||||||||||||| |||||||| | | |||| || |||||
Sbjct: 413 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 472
Query: 656 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 715
|||||| |||||||||||||| | || || |||||||| | ||| |||| || || ||
Sbjct: 473 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 532
Query: 716 gttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgta 775
||||| | ||||| ||| |||||||| || ||||| |||| ||||||||||||||||||
Sbjct: 533 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgta 592
Query: 776 tctcagcgagcactc 790
|||| |||||||||
Sbjct: 593 cctcaacgagcactc 607
>gb|AV921048.1|AV921048 AV921048 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16l01 3', mRNA sequence
Length = 651
Score = 143 bits (72), Expect = 2e-032
Identities = 211/256 (82%), Gaps = 1/256 (0%)
Strand = Plus / Plus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 655
||||||||| |||||||||||||||||||| |||||||| | | |||| || |||||
Sbjct: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446
Query: 656 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 715
|||||| |||||||||||||| | || || |||||||| | ||| |||| || || ||
Sbjct: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 506
Query: 716 gttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcacc-atgatgt 774
||||| | ||||| ||| |||||||| || ||||| |||| |||||||||| |||||||
Sbjct: 507 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccaatgatgt 566
Query: 775 atctcagcgagcactc 790
| |||| |||||||||
Sbjct: 567 acctcaacgagcactc 582
>gb|AV922079.1|AV922079 AV922079 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j24 3', mRNA sequence
Length = 534
Score = 113 bits (57), Expect = 2e-023
Identities = 120/141 (85%)
Strand = Plus / Plus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 339 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 398
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 655
||||||||| |||||||||||||||||||| |||||||| | | |||| || |||||
Sbjct: 399 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 458
Query: 656 ctctttcctgatccgatcaag 676
|||||| ||||||||||||||
Sbjct: 459 ctcttttctgatccgatcaag 479
>gb|AJ462078.1|AJ462078 AJ462078 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200004D02F1, mRNA sequence
Length = 300
Score = 99.6 bits (50), Expect = 3e-019
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 536 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 595
|||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| ||
Sbjct: 145 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 86
Query: 596 gaacaggtgaggaacccaggtggcttccttgagcttga 633
||||||||| |||||||||||||||||||| |||||||
Sbjct: 85 gaacaggtggggaacccaggtggcttccttcagcttga 48
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.056
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 102 cgtacctcggccgcgaccacgcta 79
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-153 similar
to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 180 gtacctcggccgcgaccacgcta 202
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 101 gtacctcggccgcgaccacgcta 79
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 40.1 bits (20), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 334 gtacctcggccgcgaccacgcta 356
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,342
Number of Sequences: 312970
Number of extensions: 144342
Number of successful extensions: 38465
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38377
Number of HSP's gapped (non-prelim): 60
length of query: 1603
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1584
effective length of database: 169,188,109
effective search space: 267993964656
effective search space used: 267993964656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)