BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgar... 557 e-157
gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-a... 549 e-155
gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedl... 424 e-117
gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedl... 377 e-103
gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgar... 339 1e-091
gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. v... 299 1e-079
gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. v... 252 2e-065
gb|CA022858.1|CA022858 HZ44I22r HZ Hordeum vulgare subsp. v... 176 1e-042
gb|BE456133.3|BE456133 HVSMEg0019P07f Hordeum vulgare pre-a... 172 2e-041
gb|BF257803.3|BF257803 HVSMEf0013P05f Hordeum vulgare seedl... 153 2e-035
gb|BU980777.1|BU980777 HA21K17r HA Hordeum vulgare subsp. v... 137 9e-031
gb|BF625837.2|BF625837 HVSMEa0013M18f Hordeum vulgare seedl... 111 5e-023
gb|CA015982.1|CA015982 HV10N22u HV Hordeum vulgare subsp. v... 107 8e-022
gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Le... 50 2e-004
gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA li... 50 2e-004
gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. v... 50 2e-004
>gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A075 5-PRIME, mRNA sequence
Length = 670
Score = 557 bits (281), Expect = e-157
Identities = 509/585 (87%)
Strand = Plus / Plus
Query: 183 gttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagat 242
||||| ||||||||||| || ||||||||||||||||||||||| |||||||| || |||
Sbjct: 16 gttctttttgagcttgcaagacatcatgcaccatccacaatatttcttgatgagattgat 75
Query: 243 gctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaag 302
||||| || || ||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 76 gctattattagtcagcgtggtgaagctcgtagcgagcatgaagctagtcgacgcttgaag 135
Query: 303 actgagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtactt 362
||||| |||||||||||||||||||| |||||||| || || ||||| |||||||| |||
Sbjct: 136 actgaactacttattcagatggatggcttgacaaaaaccaaagacttagtatttgtgctt 195
Query: 363 gcagctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcgg 422
||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 196 gcagcaacaaatctaccatgggaattggatgcagctatgctccgtcggcttgagaagcgg 255
Query: 423 attcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcca 482
||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||
Sbjct: 256 attcttgtaccacttcctgaagccgaagcaaggcattccatgtttaaggaacttctgccc 315
Query: 483 gcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttac 542
|||| |||||||| |||| |||| || || || ||||||||||||| ||||| |||
Sbjct: 316 gcaatgacctcaaatctagaggtcccatatgatattttagttgaaaagactgaagggtac 375
Query: 543 tctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctc 602
|||||||| ||||||||||| ||||||||||| ||||| ||||| ||| |||| ||||||
Sbjct: 376 tctggttcggatattcgtcttgtgtgcaaagaggctgctatgcagccattgaggcgtctc 435
Query: 603 atgtcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggc 662
||||||||||| ||||||||||| ||| |||| || |||||||| ||||||||||||||
Sbjct: 436 atgtcagttctcgaagccagtgatgagctggtgccagaggaagagttgcctgaggttggc 495
Query: 663 cctctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctc 722
||||| |||||||| || | |||||||| || || ||||| ||||||||||||||||||
Sbjct: 496 cctctcaaacctgacgacgtggaacttgctttgagcaacacaaggccgtcagcacatctc 555
Query: 723 catgcgcatcgctatgagaagttcaaccaggactacggtagccat 767
|| || ||||| ||||| || || |||||||||||||| ||||||
Sbjct: 556 caagcacatcggtatgaaaaatttaaccaggactacgggagccat 600
>gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011H06f, mRNA sequence
Length = 543
Score = 549 bits (277), Expect = e-155
Identities = 448/505 (88%)
Strand = Plus / Plus
Query: 82 tggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaa 141
|||| ||||||||||||||||||||||| || || |||||||||||||| || |||||||
Sbjct: 3 tggccaaagcggtcgctactgagtgcaatactacattcttcaacatttcggcttcatcaa 62
Query: 142 ttgtcagcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgcta 201
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 63 ttgtcagcaaatggcgtggagattctgagaagctagtcaaagttctttttgagcttgcaa 122
Query: 202 ggcatcatgcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgtg 261
| ||||||||||||||||||||||| |||||||| || |||||||| || || |||||||
Sbjct: 123 gacatcatgcaccatccacaatatttcttgatgagattgatgctattattagtcagcgtg 182
Query: 262 gtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcaga 321
|||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 183 gtgaagctcgtagcgagcatgaagctagtcgacgcttgaagactgaactacttattcaga 242
Query: 322 tggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccct 381
||||||| |||||||| || || ||||| |||||||| |||||||| |||||||| || |
Sbjct: 243 tggatggcttgacaaaaaccaaagacttagtatttgtgcttgcagcaacaaatctaccat 302
Query: 382 gggaattggatgcagccatgctccgccggcttgagaagcggattcttgtaccgcttcctg 441
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 303 gggaattggatgcagctatgctccgtcggcttgagaagcggattcttgtaccacttcctg 362
Query: 442 aaggtgaagcaaggcaagcgatgtttgaggaacttctgccagcaactacctcaaagttag 501
||| |||||||||||| | |||||| ||||||||||||| |||| |||||||| |||
Sbjct: 363 aagctgaagcaaggcattccatgtttaaggaacttctgcccgcaatgacctcaaatctag 422
Query: 502 aaatcccgtacgacatactagttgaaaagaccgaaggttactctggttcagatattcgtc 561
| |||| || || || ||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 423 aggtcccatatgatattttagttgaaaagactgaagggtactctggttcggatattcgtc 482
Query: 562 tcgtgtgcaaagaagctgccatgca 586
| ||||||||||| ||||| |||||
Sbjct: 483 ttgtgtgcaaagaggctgctatgca 507
>gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021J12f, mRNA sequence
Length = 815
Score = 424 bits (214), Expect = e-117
Identities = 419/482 (86%), Gaps = 4/482 (0%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || |||||||||||||||||||||| || |
Sbjct: 229 acccaaaatacttcactggtctactatcaccgcggaaaggcatcttactttttggtcctc 288
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 289 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 348
Query: 121 tcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtca 180
|||||||||| || ||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 349 tcaacatttccgcttcatcaattgtcaccaaatggcgtggagattctgagaagctagtca 408
Query: 181 aagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatag 240
||| ||| ||||||||||| || ||||||||||||| ||||||||| |||||||| || |
Sbjct: 409 aaggtctttttgagcttgcaagacatcatgcaccattcacaatatttcttgatgagattg 468
Query: 241 atgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttga 300
||||||| || | || |||||||||||||| || |||||||| |||||||| |||||||
Sbjct: 469 atgctattattattcaacgtggtgaagctcgtagcgagcatgaagctagtcgacgcttga 528
Query: 301 agactgagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtac 360
||||||| |||||||||||||||||||| |||||||| || || ||||| ||||||| |
Sbjct: 529 agactgaactacttattcagatggatggcttgacaaaaaccaaagacttagtatttgggc 588
Query: 361 ttgcagctacaaatcttccctgggaattggatgcagccatgctccg-ccggcttgagaag 419
||||| | || ||||| || |||||||||||||| | |||||||| ||||| || ||||
Sbjct: 589 ttgcaacaactaatctaccatgggaattggatgccg-tatgctccgtccggc-tgggaag 646
Query: 420 cggattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctg 479
||||||||||| || ||| |||||| |||||||||||| | |||||| |||||||||||
Sbjct: 647 cggattcttgt-ccactttctgaagctgaagcaaggcattccatgtttaaggaacttctg 705
Query: 480 cc 481
||
Sbjct: 706 cc 707
>gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002L12f, mRNA sequence
Length = 852
Score = 377 bits (190), Expect = e-103
Identities = 373/430 (86%), Gaps = 3/430 (0%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 419 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 478
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 479 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 538
Query: 121 tcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtca 180
| |||||||| || ||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 539 tgaacatttcggcttcatcaattgtcaacaaatggcgtggagattctgagaagctagtca 598
Query: 181 aagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatag 240
||||||| ||||||||||| || ||| |||||||| |||||||||| |||||||| || |
Sbjct: 599 aagttctttttgagcttgcaagacattatgcaccaaccacaatatttcttgatgagattg 658
Query: 241 atgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttga 300
||||||| || || || |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 659 atgctattattagtcaacgtggtgaagctcgtgccgagcatgaagctagtcgacgcttga 718
Query: 301 agactgagctacttattcagatggatgg-tttgacaaagacaaacgacttggtatttgta 359
||| ||| |||||||||||||||||||| |||| |||| || || ||||| ||||||
Sbjct: 719 agaatgaactacttattcagatggatggctttgccaaaaaccaaggactt-atatttggg 777
Query: 360 cttgcagctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaag 419
|||||||| |||||||| || |||||| ||||||||| ||||| || |||||||||||
Sbjct: 778 cttgcagcaacaaatctcccatgggaa-tggatgcaggtatgcttcgtcggcttgagaaa 836
Query: 420 cggattcttg 429
||||||||||
Sbjct: 837 cggattcttg 846
>gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O136 5-PRIME, mRNA sequence
Length = 752
Score = 339 bits (171), Expect = 1e-091
Identities = 286/322 (88%), Gaps = 2/322 (0%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 432 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 491
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 492 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 551
Query: 121 tcaacatttcagcatcatcaa-ttgtcagcaaatggcgtggagattcagagaagcttgtc 179
|||||||||| || ||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct: 552 tcaacatttcggcttcatcaatttgtcagcaaatggcgtggagattctgagaagctagtc 611
Query: 180 aaagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaata 239
|||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||
Sbjct: 612 aaagttctttttgagcttgcaagacatcatgcaccatccacaatatttcttgatgagatt 671
Query: 240 gatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttg 299
|||||||| || || ||||| || | | |||| || |||||||| |||||||| ||||||
Sbjct: 672 gatgctattattagtcagcg-ggggganctcgtagcgagcatgaagctagtcgacgcttg 730
Query: 300 aagactgagctacttattcaga 321
|||||||| |||||||||||||
Sbjct: 731 aagactgaactacttattcaga 752
>gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. vulgare cDNA clone HA13G08
5-PRIME, mRNA sequence
Length = 544
Score = 299 bits (151), Expect = 1e-079
Identities = 214/235 (91%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 302 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 361
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 362 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 421
Query: 121 tcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtca 180
|||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 422 tcaacatttcggcttcatcaattgtcagcaaatggcgtggagattctgagaagctagtca 481
Query: 181 aagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatga 235
||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 482 aagttctttttgagcttgcaagacatcatgcaccatccacaatatttcttgatga 536
>gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11G09
5-PRIME, mRNA sequence
Length = 620
Score = 252 bits (127), Expect = 2e-065
Identities = 181/199 (90%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 415 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 474
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 475 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 534
Query: 121 tcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtca 180
|||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 535 tcaacatttcggcttcatcaattgtcagcaaatggcgtggagattctgagaagctagtca 594
Query: 181 aagttctgtttgagcttgc 199
||||||| |||||||||||
Sbjct: 595 aagttctttttgagcttgc 613
>gb|CA022858.1|CA022858 HZ44I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44I22
5-PRIME, mRNA sequence
Length = 563
Score = 176 bits (89), Expect = 1e-042
Identities = 134/149 (89%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 415 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 474
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 475 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 534
Query: 121 tcaacatttcagcatcatcaattgtcagc 149
|||||||||| || |||||||||||||||
Sbjct: 535 tcaacatttcggcttcatcaattgtcagc 563
>gb|BE456133.3|BE456133 HVSMEg0019P07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019P07f, mRNA sequence
Length = 592
Score = 172 bits (87), Expect = 2e-041
Identities = 138/155 (89%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 399 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 458
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 459 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 518
Query: 121 tcaacatttcagcatcatcaattgtcagcaaatgg 155
|||||||||| || | || ||||||||||||||||
Sbjct: 519 tcaacatttcggctttattaattgtcagcaaatgg 553
>gb|BF257803.3|BF257803 HVSMEf0013P05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013P05f, mRNA sequence
Length = 541
Score = 153 bits (77), Expect = 2e-035
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 413 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 472
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || || ||||
Sbjct: 473 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaatactacattct 532
Query: 121 tcaacattt 129
|||||||||
Sbjct: 533 tcaacattt 541
>gb|BU980777.1|BU980777 HA21K17r HA Hordeum vulgare subsp. vulgare cDNA clone HA21K17
5-PRIME, mRNA sequence
Length = 547
Score = 137 bits (69), Expect = 9e-031
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 431 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 490
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaa 109
|||||||||| ||||| ||| |||| |||||||||||||||||||||||
Sbjct: 491 caggaacagggaagaccatgttggccaaagcggtcgctactgagtgcaa 539
>gb|BF625837.2|BF625837 HVSMEa0013M18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013M18f, mRNA sequence
Length = 516
Score = 111 bits (56), Expect = 5e-023
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| || || || ||||||||||||||||||||||| || |
Sbjct: 421 acccaaaatacttcactggtctactatcaccgtggaaaggcatcttactttttggtcctc 480
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcg 96
|||||||||| ||||| ||| |||| ||||||||||
Sbjct: 481 caggaacagggaagaccatgttggccaaagcggtcg 516
>gb|CA015982.1|CA015982 HV10N22u HV Hordeum vulgare subsp. vulgare cDNA clone HV10N22
3-PRIME, mRNA sequence
Length = 482
Score = 107 bits (54), Expect = 8e-022
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 650 gcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacactaggcc 709
|||||||||||||||||| |||||||| || | |||||||| || || ||||| |||||
Sbjct: 482 gcctgaggttggccctctcaaacctgacgacgtggaacttgctttgagcaacacaaggcc 423
Query: 710 gtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagccat 767
||||||||||||||| || ||||| ||||| || || |||||||||||||| ||||||
Sbjct: 422 gtcagcacatctccaagcacatcggtatgaaaaatttaaccaggactacgggagccat 365
>gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 535
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 706 ggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagcc 765
||||||| || ||||||||||| ||| | |||||||||||||| || || || || ||||
Sbjct: 224 ggccgtctgctcatctccatgcacatagatatgagaagttcaatcaagattatggcagcc 283
Query: 766 atgtc 770
|||||
Sbjct: 284 atgtc 288
>gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags3f23, mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 706 ggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagcc 765
||||||| || ||||||||||| ||| | |||||||||||||| || || || || ||||
Sbjct: 315 ggccgtctgctcatctccatgcacatagatatgagaagttcaatcaagattatggcagcc 256
Query: 766 atgtc 770
|||||
Sbjct: 255 atgtc 251
>gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. vulgare cDNA clone HU05K13
3-PRIME, mRNA sequence
Length = 483
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 706 ggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagcc 765
||||||| || ||||||||||| ||| | |||||||||||||| || || || || ||||
Sbjct: 253 ggccgtctgctcatctccatgcacatagatatgagaagttcaatcaagattatggcagcc 194
Query: 766 atgtc 770
|||||
Sbjct: 193 atgtc 189
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,872
Number of Sequences: 312970
Number of extensions: 106872
Number of successful extensions: 26035
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26007
Number of HSP's gapped (non-prelim): 20
length of query: 1174
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1155
effective length of database: 169,188,109
effective search space: 195412265895
effective search space used: 195412265895
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)