BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 135 2e-030
gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. v... 103 8e-021
gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthe... 98 5e-019
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 90 1e-016
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 90 1e-016
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 90 1e-016
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 90 1e-016
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 90 1e-016
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 90 1e-016
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 90 1e-016
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 90 1e-016
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 90 1e-016
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 90 1e-016
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 82 3e-014
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 76 2e-012
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 72 3e-011
gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA li... 66 2e-009
gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA li... 66 2e-009
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 66 2e-009
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 66 2e-009
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 62 3e-008
gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa... 50 1e-004
gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no... 50 1e-004
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 50 1e-004
gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA li... 50 1e-004
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 50 1e-004
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 50 1e-004
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 50 1e-004
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 46 0.002
gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA li... 44 0.006
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.024
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 40 0.096
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 40 0.096
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 40 0.096
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 40 0.096
gb|AV931775.1|AV931775 AV931775 K. Sato unpublished cDNA li... 40 0.096
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 40 0.096
gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA li... 40 0.096
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.096
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.096
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.096
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.096
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.096
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.096
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.096
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 40 0.096
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.096
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 40 0.096
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.38
gb|BM442984.2|BM442984 EBro02_SQ002_B14_R root, 3 week, hyd... 38 0.38
gb|BM442985.2|BM442985 EBro02_SQ002_B15_R root, 3 week, hyd... 38 0.38
gb|CB858470.1|CB858470 HI07C07w HI Hordeum vulgare subsp. v... 38 0.38
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 38 0.38
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 135 bits (68), Expect = 2e-030
Identities = 194/236 (82%)
Strand = Plus / Plus
Query: 66 aaccagagtgtgctggtttattgcttctcatgggttgtaatttttgtgattttgctcgtt 125
||||| || ||||||||||| |||||||||||||||| ||| | || || |||| |||
Sbjct: 419 aaccaaagcgtgctggtttacggcttctcatgggttgtgattctggtcatgctgcttgtt 478
Query: 126 atgaagaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccgg 185
||||||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 479 atgaagaccgtgtcagtcggcaggaggaggttcagcgcggagttccagctcgtcttccgg 538
Query: 186 ttgatcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatc 245
|||||||||| || ||||| |||||||| | ||||| | ||||| ||| ||| |||
Sbjct: 539 ctgatcaaggggcttatattcataacattcatctccatccttataatcttaacagcaatc 598
Query: 246 cctggcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactgg 301
|| |||||| || || ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 599 gctcacatgacagtcctcgacatctttgtctgcatcctcgctttcatgccgactgg 654
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 gtacggacttgtgtatcatctgaatataac 46
|||||| |||||||||||| ||||||||||
Sbjct: 379 gtacgggcttgtgtatcatttgaatataac 408
>gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P09
3-PRIME, mRNA sequence
Length = 541
Score = 103 bits (52), Expect = 8e-021
Identities = 91/104 (87%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 418 tcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgc 477
||||||||||||| | |||||| || || | |||||||| || ||||||||||||||||
Sbjct: 15 tcacgcccatcgcgt-cctcgcgtggttccccttcgtgtccgagttccagaccaggatgc 73
Query: 478 tgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 74 tcttcaaccaggctttcagcagaggcctgcagatctcccgtatc 117
>gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K10 5', mRNA sequence
Length = 440
Score = 97.6 bits (49), Expect = 5e-019
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 450 ttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcag 509
|||||||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 39 ttcgtgtccgagttccagaccaggatgctcttcaaccaggctttcagcagaggcctgcag 98
Query: 510 atctcccgtatc 521
||||||||||||
Sbjct: 99 atctcccgtatc 110
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 423 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 364
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 363 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 304
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 303 atgctcttcaaccaggccttcagccgtggtctgcagatctc 263
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 514 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 470
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 621 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 575
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 426 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 367
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 366 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 307
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 306 atgctcttcaaccaggccttcagccgtggtctgcagatctc 266
Score = 40.1 bits (20), Expect = 0.096
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 276 tgcatccttgctttcatgcccactggatgggg 307
||||||||||| |||||||| || ||||||||
Sbjct: 504 tgcatccttgccttcatgccaacgggatgggg 473
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 401 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 342
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 341 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 282
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 281 atgctcttcaaccaggccttcagccgtggtctgcagatctc 241
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 477 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 418
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 417 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 358
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 357 atgctcttcaaccaggccttcagccgtggtctgcagatctc 317
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 568 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 524
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 675 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 629
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 447 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 388
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 387 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 328
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 327 atgctcttcaaccaggccttcagccgtggtctgcagatctc 287
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 538 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 494
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 645 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 599
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 431 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 372
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 371 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 312
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 311 atgctcttcaaccaggccttcagccgtggtctgcagatctc 271
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 522 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 478
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 629 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 583
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 425 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 366
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 365 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 306
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 305 atgctcttcaaccaggccttcagccgtggtctgcagatctc 265
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 516 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 472
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 425 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 366
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 365 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 306
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 305 atgctcttcaaccaggccttcagccgtggtctgcagatctc 265
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 516 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 472
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 487 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 428
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 427 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 368
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 367 atgctcttcaaccaggccttcagccgtggtctgcagatctc 327
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 578 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 534
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 89.7 bits (45), Expect = 1e-016
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 511 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 452
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 451 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 392
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctc 514
||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 391 atgctcttcaaccaggccttcagccgtggtctgcagatctc 351
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 81.8 bits (41), Expect = 3e-014
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 390 tacgagatcctgatgggacttctcctgttcacgcccatcgccttcctcgcctgnttnncg 449
||||||||| | ||||| || || || ||||| || ||||| ||||| || || || ||
Sbjct: 480 tacgagatcatcatggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccg 421
Query: 450 ttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcag 509
|||||||| || |||||||| ||||||| ||||||||||| |||||| | |||||||||
Sbjct: 420 ttcgtgtctgagttccagactcggatgctcttcaaccaggccttcagccgtggtctgcag 361
Query: 510 atctc 514
|||||
Sbjct: 360 atctc 356
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 79.8 bits (40), Expect = 1e-013
Identities = 125/155 (80%)
Strand = Plus / Minus
Query: 360 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 419
||||| |||||| |||||| || || || ||||||||| | ||||| | || || |||
Sbjct: 320 tgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggntgctgctcttc 261
Query: 420 acgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctg 479
|| || ||||| ||||| || || || |||||||||| || |||||||| |||||||
Sbjct: 260 accccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatgctc 201
Query: 480 ttcaaccaggcgttcagcagnggtctgcagatctc 514
||||||||||| |||||| | ||||||||||||||
Sbjct: 200 ttcaaccaggccttcagccgtggtctgcagatctc 166
>gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 5', mRNA sequence
Length = 483
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 37 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 96
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 97 ctcttcaaccaggccttcagccgtggtctgcagatctc 134
>gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 5', mRNA sequence
Length = 471
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 25 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 84
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 85 ctcttcaaccaggccttcagccgtggtctgcagatctc 122
>gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 5', mRNA sequence
Length = 474
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 28 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 87
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 88 ctcttcaaccaggccttcagccgtggtctgcagatctc 125
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 368 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 309
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 308 ctcttcaaccaggccttcagccgtggtctgcagatctc 271
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 390 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 331
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 330 ctcttcaaccaggccttcagccgtggtctgcagatctc 293
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 75.8 bits (38), Expect = 2e-012
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || ||||| ||||| || || || |||||||||| || |||||||| |||||
Sbjct: 389 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 330
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 329 ctcttcaaccaggccttcagccgtggtctgcagatctc 292
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 71.9 bits (36), Expect = 3e-011
Identities = 128/160 (80%)
Strand = Plus / Plus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||| ||||| | ||||| || ||
Sbjct: 307 gggctgtgggggtcgatccgggctctagctcgtgggtaccagatcatcatggggctgctg 366
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| ||
Sbjct: 367 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 426
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatct 513
||||| |||||||| || |||||| | |||||||||||||
Sbjct: 427 atgctcttcaaccaagccttcagccgtggtctgcagatct 466
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 216 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 260
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 109 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 155
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 31 ctggtttattgcttgtcatgggttgt 56
>gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 5', mRNA sequence
Length = 447
Score = 65.9 bits (33), Expect = 2e-009
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 417 ttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatg 476
||||| || |||| ||||| || || || |||||||| | || |||||||| |||||
Sbjct: 10 ttcaccccgatcgnnttcctggcgtggttcccgttcgtgnctgagttccagactcggatg 69
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctc 514
|| ||||||||||| |||||| | ||||||||||||||
Sbjct: 70 ctcttcaaccaggccttcagccgtggtctgcagatctc 107
>gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 3', mRNA sequence
Length = 405
Score = 65.9 bits (33), Expect = 2e-009
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 448 cgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgc 507
|||||||||| | |||||||| ||||||| ||||||||||| |||||| | |||||||
Sbjct: 382 cgttcgtgtctnagttccagactcggatgctcttcaaccaggccttcagccgtggtctgc 323
Query: 508 agatctc 514
|||||||
Sbjct: 322 agatctc 316
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 65.9 bits (33), Expect = 2e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 124 ttccagacgcggatgctgttcaaccaggcgttcagtagagggctgcagatatcccg 179
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 65.9 bits (33), Expect = 2e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
|||||||| ||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 231 ttccagacgcggatgctgttcaaccaggcgttcagtagagggctgcagatatcccg 286
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 61.9 bits (31), Expect = 3e-008
Identities = 126/158 (79%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
||||| ||||| |||||| |||||| || || || ||||||||| | ||||| || ||
Sbjct: 498 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 557
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
|| ||||| || ||||| ||||| || || || |||||||||| || |||||||| |
Sbjct: 558 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcng 617
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagat 511
||||| || |||||||| |||||| | |||||||||||
Sbjct: 618 atgctctt-aaccaggccttcagccgtggtctgcagat 654
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 407 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 451
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 300 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 346
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 222 ctggtttattgcttgtcatgggttgt 247
>gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022K21f, mRNA sequence
Length = 507
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 400 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 444
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 293 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 339
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 215 ctggtttattgcttgtcatgggttgt 240
>gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_J05 5', mRNA sequence
Length = 342
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctccc 516
|||||||||||||| |||||| | |||||| |||||||||
Sbjct: 16 ctgttcaaccaggccttcagccgtggtctggagatctccc 55
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 355 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 248 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 294
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 170 ctggtttattgcttgtcatgggttgt 195
>gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 5', mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatgggg 307
||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 326 ggacatattcgtctgcatccttgccttcatgccaacgggatgggg 370
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 219 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 265
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 141 ctggtttattgcttgtcatgggttgt 166
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctccc 516
|||||||||||||| |||||| | |||||| |||||||||
Sbjct: 291 ctgttcaaccaggccttcagccgtggtctggagatctccc 330
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctccc 516
|||||||||||||| |||||| | |||||| |||||||||
Sbjct: 354 ctgttcaaccaggccttcagccgtggtctggagatctccc 315
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 50.1 bits (25), Expect = 1e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggtctgcagatctccc 516
|||||||||||||| |||||| | |||||| |||||||||
Sbjct: 447 ctgttcaaccaggccttcagccgtggtctggagatctccc 408
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 156 ttcagtgcagagttccagctagtgttccggttgatcaagggtctgat 202
||||| || ||||||||||| ||||||||| || ||||||| |||||
Sbjct: 418 ttcagcgcggagttccagctcgtgttccggctgctcaaggggctgat 464
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 340 ctggtttattgcttgtcatgggttgt 365
>gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 5', mRNA sequence
Length = 300
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctggtttattgcttctcatgggttgt 103
|||||||||||||| |||||||||||
Sbjct: 171 ctggtttattgcttgtcatgggttgt 196
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacg 21
|||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtacg 340
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 376 ctgttcaaccaggctttcagcagaggt 350
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 289 ctgttcaaccaggctttcagcagaggt 263
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 371 ctgttcaaccaggctttcagcagaggt 397
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 593 ctgttcaaccaggctttcagcagaggt 619
>gb|AV931775.1|AV931775 AV931775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c09 3', mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.096
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 173 gctagtgttccggttgatcaaggg 196
|||||||||| |||||||||||||
Sbjct: 108 gctagtgttcaggttgatcaaggg 85
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 147 ctgttcaaccaggctttcagcagaggt 173
>gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14l04 3', mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.096
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
|||||||||||||| |||||||| |||
Sbjct: 352 ctgttcaaccaggctttcagcagaggt 326
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtac 242
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-7, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtac 271
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtac 241
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtac 328
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,069
Number of Sequences: 312970
Number of extensions: 40069
Number of successful extensions: 11127
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11022
Number of HSP's gapped (non-prelim): 104
length of query: 710
length of database: 175,134,539
effective HSP length: 19
effective length of query: 691
effective length of database: 169,188,109
effective search space: 116908983319
effective search space used: 116908983319
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)