BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA li... 448 e-124
gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA li... 448 e-124
gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA li... 448 e-124
gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. v... 448 e-124
gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgar... 436 e-121
gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke devel... 434 e-120
gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedl... 424 e-117
gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA li... 381 e-104
gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. v... 377 e-103
gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. v... 377 e-103
gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedl... 339 6e-092
gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. v... 285 8e-076
gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA li... 262 1e-068
gb|BQ756038.1|BQ756038 EBem05_SQ001_G05_R embryo, 14 DPA, n... 240 4e-062
gb|CA023543.1|CA023543 HZ46J08r HZ Hordeum vulgare subsp. v... 230 4e-059
gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. v... 228 2e-058
gb|AV926015.1|AV926015 AV926015 K. Sato unpublished cDNA li... 204 2e-051
gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. v... 174 2e-042
gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. v... 147 5e-034
gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. v... 135 2e-030
gb|BQ757070.1|BQ757070 EBem10_SQ002_L08_R embryo, 2 Day ger... 103 7e-021
gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. v... 100 1e-019
gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. v... 88 4e-016
>gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1j14 5', mRNA sequence
Length = 580
Score = 448 bits (226), Expect = e-124
Identities = 385/438 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 17 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 76
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 77 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 136
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 137 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 196
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 197 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 256
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 257 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 316
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 317 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 376
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 377 gtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctct 436
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 437 gataacacttttgatgct 454
>gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal4j24 5', mRNA sequence
Length = 677
Score = 448 bits (226), Expect = e-124
Identities = 385/438 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 96 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 155
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 156 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 215
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 216 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 275
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 276 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 335
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 336 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 395
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 396 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 455
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 456 gtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctct 515
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 516 gataacacttttgatgct 533
>gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k11 5', mRNA sequence
Length = 628
Score = 448 bits (226), Expect = e-124
Identities = 385/438 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 70 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 129
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 130 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 189
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 190 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 249
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 250 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 309
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 310 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 369
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 370 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 429
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 430 gtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctct 489
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 490 gataacacttttgatgct 507
>gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61I02
5-PRIME, mRNA sequence
Length = 678
Score = 448 bits (226), Expect = e-124
Identities = 385/438 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 196 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 255
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 256 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 315
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 316 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 375
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 376 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 435
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 436 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 495
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 496 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 555
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 556 gtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctct 615
Query: 597 gacaacacttttgatgct 614
|| |||||||||||||||
Sbjct: 616 gataacacttttgatgct 633
>gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J234 5-PRIME, mRNA sequence
Length = 730
Score = 436 bits (220), Expect = e-121
Identities = 379/432 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 193 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 252
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 253 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 312
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 313 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 372
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 373 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 432
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 433 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 492
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 493 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 552
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgat 596
| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 553 gtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctct 612
Query: 597 gacaacactttt 608
|| |||||||||
Sbjct: 613 gataacactttt 624
>gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J16V 5',
mRNA sequence
Length = 700
Score = 434 bits (219), Expect = e-120
Identities = 385/439 (87%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 176 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 235
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 236 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 295
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 296 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 355
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 356 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 415
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 416 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 475
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 476 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 535
Query: 537 gcaggaattagtggaacatgtga-ttttgtcaaggcggacttcatgaagatgccgttcga 595
| |||| |||||||||| ||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 536 gtaggacttagtggaacttgtgatttttgtcaaggcagacttcatgaagatgccattctc 595
Query: 596 tgacaacacttttgatgct 614
||| |||||||||||||||
Sbjct: 596 tgataacacttttgatgct 614
>gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B21f, mRNA sequence
Length = 601
Score = 424 bits (214), Expect = e-117
Identities = 363/413 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 178 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 237
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 238 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 297
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 298 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 357
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 358 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 417
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 418 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 477
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 478 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 537
Query: 537 gcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgcc 589
| |||| |||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 538 gtaggacttagtggaacttgtgattntgtcaaggcagacttcatgaagatgcc 590
>gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2p18 5', mRNA sequence
Length = 469
Score = 381 bits (192), Expect = e-104
Identities = 336/384 (87%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 86 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 145
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 146 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 205
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 206 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 265
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 266 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 325
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 326 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 385
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgttta 536
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || || |
Sbjct: 386 gttactggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtct 445
Query: 537 gcaggaattagtggaacatgtgat 560
| |||| |||||||||| ||||||
Sbjct: 446 gtaggacttagtggaacttgtgat 469
>gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05A10
5-PRIME, mRNA sequence
Length = 567
Score = 377 bits (190), Expect = e-103
Identities = 310/350 (88%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 186 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 245
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 246 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 305
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 306 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 365
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 366 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 425
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 426 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 485
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagct 526
||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 486 gttactggattgaacaacaacgactaccagataactaggggaaaggagct 535
>gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04K11
5-PRIME, mRNA sequence
Length = 507
Score = 377 bits (190), Expect = e-103
Identities = 310/350 (88%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 126 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 185
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 186 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 245
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 246 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 305
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 306 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 365
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttca 476
||||| |||||||||||||| || || | ||||||||||| ||||||||||| || |||
Sbjct: 366 gatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagctccacctca 425
Query: 477 gttaccggattgaataacaacgaataccagataaccaggggaaaggagct 526
||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 426 gttactggattgaacaacaacgactaccagataactaggggaaaggagct 475
>gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007L14f, mRNA sequence
Length = 523
Score = 339 bits (171), Expect = 6e-092
Identities = 308/351 (87%), Gaps = 2/351 (0%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 166 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 225
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 226 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 285
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 286 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 345
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 346 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 405
Query: 417 gatgtgggctgtggaataggtggaccactgagagaa-attgcaagatttagctcaacttc 475
||||| |||||||||||||| || || | |||||| ||||| ||| ||||||| || ||
Sbjct: 406 gatgtcggctgtggaataggcgggccgttaagagaanattgcgaga-ttagctccacctc 464
Query: 476 agttaccggattgaataacaacgaataccagataaccaggggaaaggagct 526
|||||| |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 465 agttactggattgaacaacaacgactaccaaataactaggggaaaggagct 515
>gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H13
5-PRIME, mRNA sequence
Length = 525
Score = 285 bits (144), Expect = 8e-076
Identities = 231/260 (88%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 260 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 319
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 320 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 379
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 380 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 439
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggtttta 416
|| || || ||||| ||||| ||||| || |||| ||||||||||| |||||||||||
Sbjct: 440 aaacggcacgagcactttctggccctacagcttgagttgaaaccagggatgaaggttttg 499
Query: 417 gatgtgggctgtggaatagg 436
||||| ||||| ||||||||
Sbjct: 500 gatgtcggctgcggaatagg 519
>gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c03 5', mRNA sequence
Length = 503
Score = 262 bits (132), Expect = 1e-068
Identities = 228/260 (87%)
Strand = Plus / Plus
Query: 207 tatggagggaaggaggaagcaaggaagtccaactatactgatatggttaataaatactat 266
|||||||||||||||||| | ||||| |||||||| || |||||||||||||||||||||
Sbjct: 4 tatggagggaaggaggaatcgaggaaatccaactacaccgatatggttaataaatactat 63
Query: 267 gatcttgccactagcttctatgagtatggttggggtgaatccttccactttgctcacaga 326
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 64 gatcttgctactagcttctacgagtatggctggggtgaatccttccactttgctcacagg 123
Query: 327 tggaatggagaatccttacgtgaaagcatcaagcgacatgagcattttcttgccctgcaa 386
|||| ||||||||| ||| | ||||| ||||| || || ||||| ||||| ||||| ||
Sbjct: 124 tggagtggagaatctttaagggaaagtatcaaacggcacgagcactttctggccctacag 183
Query: 387 cttggtttgaaaccaggaatgaaggttttagatgtgggctgtggaataggtggaccactg 446
|||| ||||||||||| ||||||||||| ||||| |||||||||||||| || || |
Sbjct: 184 cttgagttgaaaccagggatgaaggttttggatgtcggctgtggaataggcgggccgtta 243
Query: 447 agagaaattgcaagatttag 466
||||||||||| ||||||||
Sbjct: 244 agagaaattgcgagatttag 263
Score = 95.6 bits (48), Expect = 2e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 539 aggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatga 598
|||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 281 aggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctctga 340
Query: 599 caacacttttgatgct 614
|||||||||||||||
Sbjct: 341 taacacttttgatgct 356
>gb|BQ756038.1|BQ756038 EBem05_SQ001_G05_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_G05 5', mRNA sequence
Length = 406
Score = 240 bits (121), Expect = 4e-062
Identities = 199/225 (88%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 182 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatcc 241
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 242 aactacaccgatatgggtaataaatactatgatcttgctactagcttctacgagtatggc 301
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 302 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 361
Query: 357 aagcgacatgagcattttcttgccctgcaacttggtttgaaacca 401
|| || || ||||| ||||| ||||| || |||| |||||||||
Sbjct: 362 aaacggcacgagcactttctggccctacagcttgagttgaaacca 406
>gb|CA023543.1|CA023543 HZ46J08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46J08
5-PRIME, mRNA sequence
Length = 376
Score = 230 bits (116), Expect = 4e-059
Identities = 165/182 (90%)
Strand = Plus / Plus
Query: 177 gtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtcc 236
||||| ||||||||||||||||||||||| |||||||||||||||||| | | ||| |||
Sbjct: 187 gtcgacgagtatgagaaatatcatggatattatggagggaaggaggaatcnangaaatcc 246
Query: 237 aactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatggt 296
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 247 aactacaccgatatggttaataaatactatgatcttgctactagcttctacgagtatggc 306
Query: 297 tggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatc 356
||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||| |||
Sbjct: 307 tggggtgaatccttccactttgctcacaggtggagtggagaatctttaagggaaagtatc 366
Query: 357 aa 358
||
Sbjct: 367 aa 368
>gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B10
5-PRIME, mRNA sequence
Length = 592
Score = 228 bits (115), Expect = 2e-058
Identities = 229/267 (85%)
Strand = Plus / Plus
Query: 348 gaaagcatcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatg 407
||||| ||||| || || ||||| ||||| ||||| || |||| ||||||||||| |||
Sbjct: 5 gaaagtatcaaacggcacgagcactttctggccctacagcttgagttgaaaccagggatg 64
Query: 408 aaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagc 467
|||||||| ||||| |||||||||||||| || || | ||||||||||| |||||||||
Sbjct: 65 aaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagatttagc 124
Query: 468 tcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaaggagctc 527
|| || |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 125 tccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggagctt 184
Query: 528 aaccgtttagcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatg 587
|| || | | |||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 185 aatcggtctgtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaagatg 244
Query: 588 ccgttcgatgacaacacttttgatgct 614
|| ||| ||| |||||||||||||||
Sbjct: 245 ccattctctgataacacttttgatgct 271
>gb|AV926015.1|AV926015 AV926015 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdm08 5', mRNA sequence
Length = 623
Score = 204 bits (103), Expect = 2e-051
Identities = 130/139 (93%)
Strand = Plus / Plus
Query: 185 gtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagtccaactatac 244
||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| ||
Sbjct: 485 gtatgagaaatatcatggatattatggagggaaggaggaatcgaggaaatccaactacac 544
Query: 245 tgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtga 304
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 545 cgatatggttaataaatactatgatcttgctactagcttctacgagtatggctggggtga 604
Query: 305 atccttccactttgctcac 323
|||||||||||||||||||
Sbjct: 605 atccttccactttgctcac 623
>gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. vulgare cDNA clone HB01F10
5-PRIME, mRNA sequence
Length = 404
Score = 174 bits (88), Expect = 2e-042
Identities = 148/168 (88%)
Strand = Plus / Plus
Query: 447 agagaaattgcaagatttagctcaacttcagttaccggattgaataacaacgaataccag 506
||||||||||| ||||||||||| || |||||||| |||||||| |||||||| ||||||
Sbjct: 8 agagaaattgcgagatttagctccacctcagttactggattgaacaacaacgactaccag 67
Query: 507 ataaccaggggaaaggagctcaaccgtttagcaggaattagtggaacatgtgattttgtc 566
||||| |||||||||||||| || || | | |||| |||||||||| ||||||||||||
Sbjct: 68 ataactaggggaaaggagcttaatcggtctgtaggacttagtggaacttgtgattttgtc 127
Query: 567 aaggcggacttcatgaagatgccgttcgatgacaacacttttgatgct 614
||||| ||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 128 aaggcagacttcatgaagatgccattctctgataacacttttgatgct 175
>gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62F08
5-PRIME, mRNA sequence
Length = 344
Score = 147 bits (74), Expect = 5e-034
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 465 agctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaaaggag 524
||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 1 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 60
Query: 525 ctcaaccgtttagcaggaattagtggaacatgtgattttgtcaaggcggacttcatgaag 584
|| || || | | |||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 61 cttaatcggtctgtaggacttagtggaacttgtgattttgtcaaggcagacttcatgaag 120
Query: 585 atgccgttcgatgacaacacttttgatgct 614
||||| ||| ||| |||||||||||||||
Sbjct: 121 atgccattctctgataacacttttgatgct 150
>gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. vulgare cDNA clone HB32E04
5-PRIME, mRNA sequence
Length = 521
Score = 135 bits (68), Expect = 2e-030
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 483 ggattgaataacaacgaataccagataaccaggggaaaggagctcaaccgtttagcagga 542
|||||||| |||||||| ||||||||||| |||||||||||||| || || | | ||||
Sbjct: 13 ggattgaacaacaacgactaccagataactaggggaaaggagcttaatcggtctgtagga 72
Query: 543 attagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatgacaac 602
|||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 73 cttagtggaacttgtgattttgtcaaggcagacttcatgaagatgccattctctgataac 132
Query: 603 acttttgatgct 614
||||||||||||
Sbjct: 133 acttttgatgct 144
>gb|BQ757070.1|BQ757070 EBem10_SQ002_L08_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_L08 5', mRNA sequence
Length = 242
Score = 103 bits (52), Expect = 7e-021
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 309 ttccactttgctcacagatggaatggagaatccttacgtgaaagcatcaagcgacatgag 368
||||||||||||||||| |||| ||||||||| ||| | ||||| ||||| || || |||
Sbjct: 98 ttccactttgctcacaggtggagtggagaatctttaagggaaagtatcaaacggcacgag 157
Query: 369 cattttcttgccctgcaacttggtttgaaaccaggaatgaaggttttagatgtgggctgt 428
|| ||||| ||||| || |||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 158 cactttctggccctacagcttgagttgaaaccagggatgaaggttttggatgtcggctgc 217
Query: 429 ggaatagg 436
||||||||
Sbjct: 218 ggaatagg 225
>gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. vulgare cDNA clone HB19E23
5-PRIME, mRNA sequence
Length = 520
Score = 99.6 bits (50), Expect = 1e-019
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 513 aggggaaaggagctcaaccgtttagcaggaattagtggaacatgtgattttgtcaaggcg 572
|||||||||||||| || || | | |||| |||||||||| |||||||||||||||||
Sbjct: 8 aggggaaaggagcttaatcggtctgtaggacttagtggaacttgtgattttgtcaaggca 67
Query: 573 gacttcatgaagatgccgttcgatgacaacacttttgatgct 614
||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 68 gacttcatgaagatgccattctctgataacacttttgatgct 109
>gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. vulgare cDNA clone HB26L16
5-PRIME, mRNA sequence
Length = 318
Score = 87.7 bits (44), Expect = 4e-016
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 539 aggaattagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatga 598
|||| ||| |||||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 11 aggacttactggaacttgtgattttgtcaaggcagacttcatgaagatgccattctctga 70
Query: 599 caacacttttgatgct 614
|||||||||||||||
Sbjct: 71 taacacttttgatgct 86
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,909
Number of Sequences: 312970
Number of extensions: 78909
Number of successful extensions: 20277
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20238
Number of HSP's gapped (non-prelim): 26
length of query: 614
length of database: 175,134,539
effective HSP length: 19
effective length of query: 595
effective length of database: 169,188,109
effective search space: 100666924855
effective search space used: 100666924855
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)