BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405010.2.1
(1644 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU999262.1|BU999262 HI13P05r HI Hordeum vulgare subsp. v... 749 0.0
gb|BG365776.2|BG365776 HVSMEi0004C15f Hordeum vulgare 20 DA... 735 0.0
gb|AV912893.1|AV912893 AV912893 K. Sato unpublished cDNA li... 708 0.0
gb|BU994669.1|BU994669 HM07M21r HM Hordeum vulgare subsp. v... 670 0.0
gb|AL507105.1|AL507105 AL507105 Hordeum vulgare Barke devel... 656 0.0
gb|BI958534.1|BI958534 HVSMEn0015H18f Hordeum vulgare rachi... 650 0.0
gb|BU995366.1|BU995366 HM10A14r HM Hordeum vulgare subsp. v... 650 0.0
gb|BI960436.1|BI960436 HVSMEn0024J13f Hordeum vulgare rachi... 632 e-180
gb|CA019987.1|CA019987 HV14A03r HV Hordeum vulgare subsp. v... 620 e-176
gb|AL506128.1|AL506128 AL506128 Hordeum vulgare Barke devel... 618 e-175
gb|BJ463324.1|BJ463324 BJ463324 K. Sato unpublished cDNA li... 585 e-165
gb|BI957842.1|BI957842 HVSMEn0011K03f Hordeum vulgare rachi... 555 e-156
gb|BI950324.1|BI950324 HVSMEl0020E03f Hordeum vulgare spike... 486 e-135
gb|BQ765070.1|BQ765070 EBca01_SQ005_P13_R carpel, pre-anthe... 482 e-134
gb|BG299537.1|BG299537 HVSMEa0020K13f Hordeum vulgare seedl... 476 e-132
gb|BM444118.1|BM444118 EBem09_SQ004_D11_R embryo, 1 Day ger... 452 e-125
gb|BE456081.2|BE456081 HVSMEg0019L02f Hordeum vulgare pre-a... 448 e-124
gb|BG417706.1|BG417706 HVSMEk0019D05f Hordeum vulgare testa... 422 e-116
gb|CA027982.1|CA027982 HZ60K04r HZ Hordeum vulgare subsp. v... 416 e-115
gb|BM373982.2|BM373982 EBma03_SQ003_E19_R maternal, 8 DPA, ... 377 e-103
gb|BM374131.2|BM374131 EBma03_SQ003_L19_R maternal, 8 DPA, ... 377 e-103
gb|BI956263.1|BI956263 HVSMEn0001M04f Hordeum vulgare rachi... 363 1e-098
gb|BU974454.1|BU974454 HB27P18r BC Hordeum vulgare subsp. v... 335 3e-090
gb|CK123655.1|CK123655 BES1824104n08 BES1824 Hordeum vulgar... 335 3e-090
gb|BM368508.2|BM368508 EBem08_SQ002_I21_R embryo, 40 DPA, n... 313 1e-083
gb|AV917643.1|AV917643 AV917643 K. Sato unpublished cDNA li... 301 4e-080
gb|BJ462434.1|BJ462434 BJ462434 K. Sato unpublished cDNA li... 295 2e-078
gb|BJ465099.1|BJ465099 BJ465099 K. Sato unpublished cDNA li... 293 9e-078
gb|CB881530.1|CB881530 HM10B13w HM Hordeum vulgare subsp. v... 246 2e-063
gb|BF620768.2|BF620768 HVSMEc0020M20f Hordeum vulgare seedl... 234 7e-060
gb|AL510624.1|AL510624 AL510624 Hordeum vulgare Barke devel... 230 1e-058
gb|AL509541.1|AL509541 AL509541 Hordeum vulgare Barke devel... 220 1e-055
gb|CB880201.1|CB880201 HM05M21w HM Hordeum vulgare subsp. v... 178 4e-043
gb|AJ433998.1|AJ433998 AJ433998 S00002 Hordeum vulgare subs... 165 6e-039
gb|BJ468230.1|BJ468230 BJ468230 K. Sato unpublished cDNA li... 161 9e-038
gb|CV060478.1|CV060478 BNEL58f1 Barley EST endosperm librar... 147 1e-033
gb|BQ660689.1|BQ660689 HI04P09u HI Hordeum vulgare subsp. v... 143 2e-032
gb|BQ463354.1|BQ463354 HI04P09r HI Hordeum vulgare subsp. v... 135 5e-030
gb|AL450653.1|AL450653 AL450653 Hordeum vulgare Barke etiol... 129 3e-028
gb|AJ435710.1|AJ435710 AJ435710 S00002 Hordeum vulgare subs... 48 0.001
gb|BE421348.1|BE421348 HWM008.D05 ITEC HWM Barley Leaf Libr... 42 0.057
gb|AL503252.1|AL503252 AL503252 Hordeum vulgare Barke roots... 42 0.057
gb|AL503569.1|AL503569 AL503569 Hordeum vulgare Barke roots... 42 0.057
gb|AL503719.1|AL503719 AL503719 Hordeum vulgare Barke roots... 42 0.057
gb|AL504038.1|AL504038 AL504038 Hordeum vulgare Barke roots... 42 0.057
gb|AL504464.1|AL504464 AL504464 Hordeum vulgare Barke roots... 42 0.057
gb|AL505043.1|AL505043 AL505043 Hordeum vulgare Barke roots... 42 0.057
gb|AL505134.1|AL505134 AL505134 Hordeum vulgare Barke roots... 42 0.057
gb|AL505227.1|AL505227 AL505227 Hordeum vulgare Barke roots... 42 0.057
gb|AL505937.1|AL505937 AL505937 Hordeum vulgare Barke roots... 42 0.057
gb|AL506538.1|AL506538 AL506538 Hordeum vulgare Barke devel... 42 0.057
gb|AL506572.1|AL506572 AL506572 Hordeum vulgare Barke devel... 42 0.057
gb|AL506691.1|AL506691 AL506691 Hordeum vulgare Barke devel... 42 0.057
gb|AL507716.1|AL507716 AL507716 Hordeum vulgare Barke devel... 42 0.057
gb|AL508905.1|AL508905 AL508905 Hordeum vulgare Barke devel... 42 0.057
gb|BF622469.2|BF622469 HVSMEa0004G21f Hordeum vulgare seedl... 42 0.057
gb|BF254657.1|BF254657 HVSMEf0004K11f Hordeum vulgare seedl... 42 0.057
gb|BF254843.2|BF254843 HVSMEf0005D08f Hordeum vulgare seedl... 42 0.057
gb|BF255870.2|BF255870 HVSMEf0008A22f Hordeum vulgare seedl... 42 0.057
gb|BF256909.2|BF256909 HVSMEf0011F12f Hordeum vulgare seedl... 42 0.057
gb|BF260905.2|BF260905 HVSMEf0023E01f Hordeum vulgare seedl... 42 0.057
gb|AW982946.2|AW982946 HVSMEg0004K04f Hordeum vulgare pre-a... 42 0.057
gb|BE455988.2|BE455988 HVSMEg0019B24f Hordeum vulgare pre-a... 42 0.057
gb|BG344221.1|BG344221 HVSMEg0008D09f Hordeum vulgare pre-a... 42 0.057
gb|BE454127.2|BE454127 HVSMEh0080M10f Hordeum vulgare 5-45 ... 42 0.057
gb|BI949739.1|BI949739 HVSMEl0015L04f Hordeum vulgare spike... 42 0.057
gb|BI956677.1|BI956677 HVSMEn0004L08f Hordeum vulgare rachi... 42 0.057
gb|BI957315.1|BI957315 HVSMEn0008N10f Hordeum vulgare rachi... 42 0.057
gb|BI957317.1|BI957317 HVSMEn0008N14f Hordeum vulgare rachi... 42 0.057
gb|BE558803.2|BE558803 HV_CEb0020G21f Hordeum vulgare seedl... 42 0.057
gb|BI958511.1|BI958511 HVSMEn0015G01f Hordeum vulgare rachi... 42 0.057
gb|BI958643.1|BI958643 HVSMEn0016A19f Hordeum vulgare rachi... 42 0.057
gb|BI958948.1|BI958948 HVSMEn0017G03f Hordeum vulgare rachi... 42 0.057
gb|BI959050.1|BI959050 HVSMEn0017O17f Hordeum vulgare rachi... 42 0.057
gb|BI959302.1|BI959302 HVSMEn0019C13f Hordeum vulgare rachi... 42 0.057
gb|BI959464.1|BI959464 HVSMEn0019M08f Hordeum vulgare rachi... 42 0.057
gb|BI959520.1|BI959520 HVSMEn0020A11f Hordeum vulgare rachi... 42 0.057
gb|BI959572.1|BI959572 HVSMEn0020E04f Hordeum vulgare rachi... 42 0.057
gb|BI959906.1|BI959906 HVSMEn0022F08f Hordeum vulgare rachi... 42 0.057
gb|BI959986.1|BI959986 HVSMEn0022L24f Hordeum vulgare rachi... 42 0.057
gb|BI960239.1|BI960239 HVSMEn0023O02f Hordeum vulgare rachi... 42 0.057
gb|BI960443.1|BI960443 HVSMEn0024J22f Hordeum vulgare rachi... 42 0.057
gb|BI960578.1|BI960578 HVSMEn0025C16f Hordeum vulgare rachi... 42 0.057
gb|BI960675.1|BI960675 HVSMEn0025M06f Hordeum vulgare rachi... 42 0.057
gb|BG343225.2|BG343225 HVSMEg0005C09f Hordeum vulgare pre-a... 42 0.057
gb|AW983194.3|AW983194 HVSMEg0008K01f Hordeum vulgare pre-a... 42 0.057
gb|BE601679.3|BE601679 HVSMEh0099C15f Hordeum vulgare 5-45 ... 42 0.057
gb|AV912858.1|AV912858 AV912858 K. Sato unpublished cDNA li... 42 0.057
gb|AV913350.1|AV913350 AV913350 K. Sato unpublished cDNA li... 42 0.057
gb|AV913569.1|AV913569 AV913569 K. Sato unpublished cDNA li... 42 0.057
gb|AV913652.1|AV913652 AV913652 K. Sato unpublished cDNA li... 42 0.057
gb|AV913654.1|AV913654 AV913654 K. Sato unpublished cDNA li... 42 0.057
gb|AV913739.1|AV913739 AV913739 K. Sato unpublished cDNA li... 42 0.057
gb|AV914462.1|AV914462 AV914462 K. Sato unpublished cDNA li... 42 0.057
gb|AV914595.1|AV914595 AV914595 K. Sato unpublished cDNA li... 42 0.057
gb|AV915934.1|AV915934 AV915934 K. Sato unpublished cDNA li... 42 0.057
gb|AV916290.1|AV916290 AV916290 K. Sato unpublished cDNA li... 42 0.057
gb|AV916815.1|AV916815 AV916815 K. Sato unpublished cDNA li... 42 0.057
gb|AV925726.1|AV925726 AV925726 K. Sato unpublished cDNA li... 42 0.057
gb|BM816178.1|BM816178 HC01C12_T3.ab1 HC Hordeum vulgare su... 42 0.057
gb|BM816179.1|BM816179 HC02E01_T3.ab1 HC Hordeum vulgare su... 42 0.057
gb|BJ447460.1|BJ447460 BJ447460 K. Sato unpublished cDNA li... 42 0.057
gb|BJ450393.1|BJ450393 BJ450393 K. Sato unpublished cDNA li... 42 0.057
gb|BJ463694.1|BJ463694 BJ463694 K. Sato unpublished cDNA li... 42 0.057
gb|BJ464409.1|BJ464409 BJ464409 K. Sato unpublished cDNA li... 42 0.057
gb|BJ467376.1|BJ467376 BJ467376 K. Sato unpublished cDNA li... 42 0.057
gb|BQ459353.1|BQ459353 HA01F21r HA Hordeum vulgare subsp. v... 42 0.057
gb|BQ463156.1|BQ463156 HI04D15r HI Hordeum vulgare subsp. v... 42 0.057
gb|BQ463306.1|BQ463306 HI04L17r HI Hordeum vulgare subsp. v... 42 0.057
gb|BQ471213.1|BQ471213 HV01J15T HV Hordeum vulgare subsp. v... 42 0.057
gb|BQ471323.1|BQ471323 HV02B15r HV Hordeum vulgare subsp. v... 42 0.057
gb|BQ472096.1|BQ472096 HV04G11r HV Hordeum vulgare subsp. v... 42 0.057
gb|BQ472320.1|BQ472320 HB09P05T BC Hordeum vulgare subsp. v... 42 0.057
gb|BQ472535.1|BQ472535 HB09E05T BC Hordeum vulgare subsp. v... 42 0.057
gb|BM101485.2|BM101485 EBpi01_SQ003_P22_R pistil, 1 DPA, no... 42 0.057
gb|BM443503.2|BM443503 EBro02_SQ005_G14_R root, 3 week, hyd... 42 0.057
gb|BI777611.2|BI777611 EBro04_SQ001_M04_R root, 3 week, sal... 42 0.057
gb|BM371206.2|BM371206 EBro04_SQ003_N12_R root, 3 week, sal... 42 0.057
gb|BQ764503.1|BQ764503 EBca01_SQ004_F05_R carpel, pre-anthe... 42 0.057
gb|BQ764525.1|BQ764525 EBca01_SQ004_K01_R carpel, pre-anthe... 42 0.057
gb|BU966735.1|BU966735 HB02D04r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU968354.1|BU968354 HB07E05r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU968575.1|BU968575 HB07P05r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU970369.1|BU970369 HB14G11r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU973256.1|BU973256 HB24E24r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU974107.1|BU974107 HB26O16r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU975281.1|BU975281 HB30K14r BC Hordeum vulgare subsp. v... 42 0.057
gb|BU981970.1|BU981970 HA25C09r HA Hordeum vulgare subsp. v... 42 0.057
gb|BU987452.1|BU987452 HF14M18r HF Hordeum vulgare subsp. v... 42 0.057
gb|BU988522.1|BU988522 HF17O04r HF Hordeum vulgare subsp. v... 42 0.057
gb|BU997112.1|BU997112 HI06P03r HI Hordeum vulgare subsp. v... 42 0.057
gb|CA017396.1|CA017396 HV05B09r HV Hordeum vulgare subsp. v... 42 0.057
gb|CA018953.1|CA018953 HV10D08r HV Hordeum vulgare subsp. v... 42 0.057
gb|CA024332.1|CA024332 HZ49A08r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA025273.1|CA025273 HZ51K17r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA027749.1|CA027749 HZ59O13r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA028829.1|CA028829 HZ63F24r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA029120.1|CA029120 HZ64E05r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA029444.1|CA029444 HZ65D19r HZ Hordeum vulgare subsp. v... 42 0.057
gb|CA029754.1|CA029754 HX05B24r HX Hordeum vulgare subsp. v... 42 0.057
gb|CA031137.1|CA031137 HX09B24r HX Hordeum vulgare subsp. v... 42 0.057
gb|CA032127.1|CA032127 HX12B15r HX Hordeum vulgare subsp. v... 42 0.057
gb|CB883563.1|CB883563 HQ02K03w HQ Hordeum vulgare subsp. v... 42 0.057
gb|CB883635.1|CB883635 HQ02N10w HQ Hordeum vulgare subsp. v... 42 0.057
gb|CK123742.1|CK123742 BES1824105d21 BES1824 Hordeum vulgar... 42 0.057
gb|CK124252.1|CK124252 BES1824108b19 BES1824 Hordeum vulgar... 42 0.057
gb|AU089842.1|AU089842 AU089842 Hordeum vulgare subsp. vulg... 40 0.23
gb|AU089867.1|AU089867 AU089867 Hordeum vulgare subsp. vulg... 40 0.23
gb|AU089993.1|AU089993 AU089993 Hordeum vulgare subsp. vulg... 40 0.23
gb|BG300073.1|BG300073 HVSMEb0011F07f Hordeum vulgare seedl... 40 0.23
gb|BG310404.1|BG310404 HVSMEc0018H08f Hordeum vulgare seedl... 40 0.23
gb|AW982197.2|AW982197 HVSMEg0002E02f Hordeum vulgare pre-a... 40 0.23
gb|BI957576.1|BI957576 HVSMEn0010D08f Hordeum vulgare rachi... 40 0.23
gb|BI958316.1|BI958316 HVSMEn0014G04f Hordeum vulgare rachi... 40 0.23
gb|AW982620.3|AW982620 HVSMEg0003M06f Hordeum vulgare pre-a... 40 0.23
gb|BE214157.3|BE214157 HV_CEb0002H13f Hordeum vulgare seedl... 40 0.23
gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare s... 40 0.23
gb|BI776330.2|BI776330 EBem04_SQ001_K08_R embryo, 12 DPA, n... 40 0.23
gb|BI778717.2|BI778717 EBro01_SQ001_D07_R root, 3 week, hyd... 40 0.23
gb|BQ757703.1|BQ757703 EBem10_SQ004_P10_R embryo, 2 Day ger... 40 0.23
gb|BQ757707.1|BQ757707 EBem10_SQ004_P14_R embryo, 2 Day ger... 40 0.23
gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, dro... 40 0.23
gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. v... 40 0.23
gb|CA022344.1|CA022344 HZ42N15r HZ Hordeum vulgare subsp. v... 40 0.23
gb|CA024897.1|CA024897 HZ50K06r HZ Hordeum vulgare subsp. v... 40 0.23
gb|CA026624.1|CA026624 HZ56H06r HZ Hordeum vulgare subsp. v... 40 0.23
gb|CA026625.1|CA026625 HZ56H08r HZ Hordeum vulgare subsp. v... 40 0.23
gb|CA030259.1|CA030259 HX06I17r HX Hordeum vulgare subsp. v... 40 0.23
gb|CA030421.1|CA030421 HX07A07r HX Hordeum vulgare subsp. v... 40 0.23
gb|CA030770.1|CA030770 HX08B09r HX Hordeum vulgare subsp. v... 40 0.23
gb|CV054175.1|CV054175 BNEL107f1 Barley EST endosperm libra... 40 0.23
gb|CV059539.1|CV059539 BNEL49c1 Barley EST endosperm librar... 40 0.23
gb|CV063066.1|CV063066 BNEL86c3 Barley EST endosperm librar... 40 0.23
gb|CV063107.1|CV063107 BNEL86g1 Barley EST endosperm librar... 40 0.23
>gb|BU999262.1|BU999262 HI13P05r HI Hordeum vulgare subsp. vulgare cDNA clone HI13P05
5-PRIME, mRNA sequence
Length = 642
Score = 749 bits (378), Expect = 0.0
Identities = 540/594 (90%)
Strand = Plus / Minus
Query: 871 caaggccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaag 930
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |
Sbjct: 642 caaggccattttctgcgccttcagcaaaaacaagcctctcaataagctgctttgcgcacg 583
Query: 931 cataggaccatctttgtttcacgattggaccaaaaatacagggcgactcatcttctttaa 990
||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||| | |
Sbjct: 582 cataggaccatctctgtttcacaattggaccaaagatgcagggtgactcatcttctgtca 523
Query: 991 gaacataaaattcaggttccttgcggagcgggtggtctttggggaggaagctgccgatgg 1050
| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 522 gcacataaaattcagcttccttgcggagggggtgatccttggggaggaagctgccgatgg 463
Query: 1051 tcttgccatagacctcgcacgtggagaagtggatgagacgcttgctgttctcggagcagt 1110
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct: 462 tcttgccatagacctcgcacgtggagaagtggatcagacgcttgccgttctccgagcagt 403
Query: 1111 acttgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgt 1170
|||||||||| ||||| || |||||||||||||||||||||||||| || || || ||||
Sbjct: 402 acttgaccaccgggagcgcgtcgatgaagttgctgtagatggtgtcgagcggccgcgtgt 343
Query: 1171 tgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttgatga 1230
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||
Sbjct: 342 tgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagatcggccatcttgacga 283
Query: 1231 gcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcga 1290
| |||||||| | || ||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 282 ggccctcgaggcgggggtcgttcttgatgttgaggcggtggaaggagatgcgcccggcga 223
Query: 1291 ggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcga 1350
|||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct: 222 ggtggggcggcggcgggtcgacgaggtggcggatcttgtcggagtagacgtcgacggcga 163
Query: 1351 ggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgc 1410
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggacgacgtgctgggtctcggccatgagcttctcgcagaggtgggagccgatgaagccgc 103
Query: 1411 cggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 102 cggcgccgatcatgcagatggtgagcggcgccacggcgccgccgtccagatcca 49
>gb|BG365776.2|BG365776 HVSMEi0004C15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004C15f, mRNA sequence
Length = 936
Score = 735 bits (371), Expect = 0.0
Identities = 585/654 (89%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 813 ccaggaatgaaatccatccttggcccaatccaattaaaaggt-ctcacgattgtgaattc 871
||||||| ||| ||||||||| |||| || ||| | |||||| ||| || | ||||| ||
Sbjct: 800 ccaggaaagaagtccatcctttgccccatacaaattaaaggttctcccgttggtgaaatc 741
Query: 872 aaggccattttctgcaccttcagcaaata-caagcctctcaataagttgcttcgcgcaag 930
|||| | |||||||| ||||||||||| | ||||| |||||||||||||||| ||||| |
Sbjct: 740 aagggccttttctgcgccttcagcaaaaaacaagcttctcaataagttgctttgcgcacg 681
Query: 931 cataggaccatctttgtttcacgattggaccaaaaatacagggcgactcatcttctttaa 990
||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||| | |
Sbjct: 680 cataggaccatctctgtttcacaattggaccaaagatgcagggtgactcatcttctgtca 621
Query: 991 gaacataaaattcaggttccttgcggagcgggtggtctttggggaggaagctgccgatgg 1050
| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 620 gcacataaaattcagcttccttgcggagngggtgatccttggggaggaagctgccgatgg 561
Query: 1051 tcttgccatagacctcgcacgtggagaagtggatgagacgcttgctgttctcggagcagt 1110
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct: 560 tcttgccatagacctcgcacgtggagaagtggatcagacgcttgccgttctccgagcagt 501
Query: 1111 acttgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgt 1170
|||||||||| ||||| || |||||||||||||||||||||||||| || || || ||||
Sbjct: 500 acttgaccaccgggagcgcgtcgatgaagttgctgtagatggtgtcgagcggccgcgtgt 441
Query: 1171 tgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttgatga 1230
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||
Sbjct: 440 tgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagatcggccatcttgacga 381
Query: 1231 gcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcga 1290
| |||||||| | || ||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 380 ggccctcgaggcgggggtcgttcttgatgttgaggcggtggaaggagatgcgcccggcga 321
Query: 1291 ggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcga 1350
|||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct: 320 ggtggggcggcggcgggtcgacgaggtggcggatcttgtcggagtagacgtcgacggcga 261
Query: 1351 ggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgc 1410
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggacgacgtgctgggtctcggccatgagcttctcgcagaggtgggagccgatgaagccgc 201
Query: 1411 cggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 200 cggcgccgatcatgcagatggtgagcggcgccacggcgccgccgtccagatcca 147
>gb|AV912893.1|AV912893 AV912893 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10n14 5', mRNA sequence
Length = 627
Score = 708 bits (357), Expect = 0.0
Identities = 558/625 (89%)
Strand = Plus / Minus
Query: 532 ccagcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactccc 591
||||||| | |||||||||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 627 ccagcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactccc 568
Query: 592 taacggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagcag 651
|||| || |||||||||| || |||||||| |||||||| || ||||||||||||||||
Sbjct: 567 taacagtgacttcattgtcagggttcccaacgttgaagatatgaccattggctcgagcag 508
Query: 652 gattttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctct 711
| ||||||||||||| | |||||||| || |||||||||||||| ||||| |||||||
Sbjct: 507 ggttttcaatcatcaaaagaacagcttcaatggcatccttgatgtaaacaaaagttctct 448
Query: 712 gagactgacccccatcaacaagcttcaagggctctctccggagcagattgttactgaagc 771
| |||| || |||||||| ||||||| ||||||||| || | |||||||| |||||||
Sbjct: 447 gggactcgccgccatcaacgagcttcaggggctctctgcgtaagagattgttgctgaagc 388
Query: 772 aagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaatgaaatccatcc 831
|||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 387 aagccaaaacccgaggaacaccctcgctaggaccatcaacgccaggaatgaagtccatcc 328
Query: 832 ttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccattttctgcacctt 891
|||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 327 ttggcccaatccaattgaaaggtctcacaatcgtgaaatcaaggccattttctgcgcctt 268
Query: 892 cagcaaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttca 951
||||||| |||||||| |||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 267 cagcaaaaacaagcctttcaataagctgctttgcgcacgcataggaccatctctgtttca 208
Query: 952 cgattggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
| ||||||||||| || ||||| |||||||||||| | || ||||||||||||| |||||
Sbjct: 207 caattggaccaaagatgcagggtgactcatcttctgtcagcacataaaattcagcttcct 148
Query: 1012 tgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacg 1071
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgcggagggggtgatccttggggaggaagctgccgatggtcttgccatagacctcgcacg 88
Query: 1072 tggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcat 1131
||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| || |
Sbjct: 87 tggagaagtggatcagacgcttgccgttctccgagcagtacttgaccaccgggagcgcgt 28
Query: 1132 cgatgaagttgctgtagatggtgtc 1156
|||||||||||||||||||||||||
Sbjct: 27 cgatgaagttgctgtagatggtgtc 3
>gb|BU994669.1|BU994669 HM07M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM07M21
5-PRIME, mRNA sequence
Length = 652
Score = 670 bits (338), Expect = 0.0
Identities = 551/622 (88%)
Strand = Plus / Minus
Query: 450 gtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgactcgag 509
|||||||||||||||||||||||||| || ||||| |||||||||||||| | ||| |
Sbjct: 648 gtcatgtcggggatcctcttgtcgctgtcgtcgtacccttcgccgtagaattctttcgcg 589
Query: 510 ctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagacctct 569
|||||||| |||| ||||| |||||||| | |||||||||||| || || |||||||||
Sbjct: 588 ctcacgtcgatcacaggctcctccagcgggggctctcctgagaccttagcatagacctct 529
Query: 570 gtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacattgaag 629
|||||||||| |||||||||||||| || |||||||||| || |||||||| |||||
Sbjct: 528 gtcatcatttcagccaactccctaacagtgacttcattgtcagggttcccaacgttgaat 469
Query: 630 atgtggccattggctcgagcaggattttcaatcatcagcactacagcttcgatagcatcc 689
|| || ||||||||||||||||| |||||||||||||| | |||||||| || ||||||
Sbjct: 468 atatgaccattggctcgagcagggttttcaatcatcagaagaacagcttcaatggcatcc 409
Query: 690 ttgatgtagacaaaggttctctgagactgacccccatcaacaagcttcaagggctctctc 749
|||||||| ||||| |||||||| |||| || ||||| || ||||||| |||||||||
Sbjct: 408 ttgatgtaaacaaaagttctctgggactcgccgccatcgacgagcttcaggggctctctg 349
Query: 750 cggagcagattgttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcg 809
|| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 348 cgtaggagattgttgctgaagcaagccaaaacccgaggaacaccctcgctaggaccatca 289
Query: 810 acaccaggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaat 869
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 288 acgccaggaatgaagtccatccttggcccaatccaattgaaaggtctcacgatcgtgaaa 229
Query: 870 tcaaggccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaa 929
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 228 tcaaggccattttctgcgccttcagcaaaaacaagcctctcaataagctgctttgcgcac 169
Query: 930 gcataggaccatctttgtttcacgattggaccaaaaatacagggcgactcatcttcttta 989
|||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||| |
Sbjct: 168 gcataggaccatctctgtttcacaattggaccaaagatgcagggtgactcatcttctgtc 109
Query: 990 agaacataaaattcaggttccttgcggagcgggtggtctttggggaggaagctgccgatg 1049
|| ||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 108 agcacataaaattcagcttccttgcggagggggtgatccttggggaggaagctgccgatg 49
Query: 1050 gtcttgccatagacctcgcacg 1071
||||||||||||||||||||||
Sbjct: 48 gtcttgccatagacctcgcacg 27
>gb|AL507105.1|AL507105 AL507105 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05I02T 5',
mRNA sequence
Length = 699
Score = 656 bits (331), Expect = 0.0
Identities = 512/567 (90%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 902 aagcctctcaataagttgcttcg-cgcaagcataggacc-atctttgtttcacgattgga 959
||||||||||||||| ||||| | |||| |||||||||| |||| |||||||| ||||||
Sbjct: 690 aagcctctcaataagctgctttggcgcacgcataggacccatctctgtttcacaattgga 631
Query: 960 ccaaaa-atacagggcgac-tcatcttctttaagaacataaaattcaggttccttgcgga 1017
|||||| || ||||| ||| ||||||||| | || ||||||||||||| |||||||||||
Sbjct: 630 ccaaaagatgcagggtgacntcatcttctgtcagcacataaaattcagcttccttgcgga 571
Query: 1018 gcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggaga 1077
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gggggtgatccttggggaggaagctgccgatggtcttgccatagacctcgcacgtggaga 511
Query: 1078 agtggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatga 1137
||||||| |||||||||| |||||| ||||||||||||||||| ||||| || |||||||
Sbjct: 510 agtggatcagacgcttgccgttctccgagcagtacttgaccaccgggagcgcgtcgatga 451
Query: 1138 agttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccg 1197
||||||||||||||||||| || || || |||||||||||||||||||||||||| ||||
Sbjct: 450 agttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgcagatcgccg 391
Query: 1198 ccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttga 1257
||||||| || ||||||||||||||||||| ||| |||||||| | || ||| |||||||
Sbjct: 390 ccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtcgttcttga 331
Query: 1258 tgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggt 1317
|||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct: 330 tgttgaggcggtggaaggagatgcgcccggcgaggtggggcggcggcgggtcgacgaggt 271
Query: 1318 ggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatga 1377
|||||||||| ||| |||| |||||||||||||||||||| || | |||||||||||||
Sbjct: 270 ggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcggccatga 211
Query: 1378 gcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggg 1437
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 210 gcttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggtgagcg 151
Query: 1438 gcgcgacggagttgccgtccagatcca 1464
|||| |||| | ||||||||||||||
Sbjct: 150 gcgccacggcgccgccgtccagatcca 124
>gb|BI958534.1|BI958534 HVSMEn0015H18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015H18f,
mRNA sequence
Length = 571
Score = 650 bits (328), Expect = 0.0
Identities = 508/567 (89%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 654 ttttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctctga 713
|||||||||||||| | |||||||| || |||||||||||||| ||||| ||||| ||
Sbjct: 567 ttttcaatcatcagaagaacagcttcaatggcatccttgatgtaaacaaaagttctttgg 508
Query: 714 gactgacccccatcaacaagcttcaagggctctctccggagcagattgttactgaagcaa 773
|||| || ||||| || ||||||| ||||||||| || || |||||||| ||||||||
Sbjct: 507 gactcgccgccatcgacgagcttcaggggctctctgcgtaggagattgttgntgaagcaa 448
Query: 774 gccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaatgaaatccatcctt 833
|||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 447 gccaaaacccgaggaacaccctcgctaggaccatcaacgccaggaatgaagtccatcctt 388
Query: 834 ggcccaatccaattaaaaggtctcacgattgtgaattcaaggccattttctgcaccttca 893
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 387 ggcccaatccaattgaaaggtctcacgatcgtgaaatcaaggccattttctgcgccttca 328
Query: 894 gcaaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacg 953
||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 327 gcaaaaacaagcctctcaataagctgctttgcgcacgcataggaccatctctgtttcaca 268
Query: 954 attggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttccttg 1013
||||||||||| || ||||| |||||||||||| | || ||||||||||||| |||||||
Sbjct: 267 attggaccaaagatgcagggtgactcatcttctgtcagcacataaaattcagcttccttg 208
Query: 1014 cggagcgggtggtctttggggaggaagct-gccgatggtcttgccatagacctcgcacgt 1072
||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 cggagggggtgatccttggggaggaagctcgccgatggtcttgccatagacctcgcacgt 148
Query: 1073 ggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatc 1132
|||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| || ||
Sbjct: 147 ggagaagtggatcagacgcttgccgttctccgagcagtacttgaccaccgggagcgcgtc 88
Query: 1133 gatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagat 1192
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 87 gatgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgcagat 28
Query: 1193 agccgccaggttgatggtcagatcggc 1219
|||||||||| || |||||||||||
Sbjct: 27 ccccgccaggtttatcgtcagatcggc 1
>gb|BU995366.1|BU995366 HM10A14r HM Hordeum vulgare subsp. vulgare cDNA clone HM10A14
5-PRIME, mRNA sequence
Length = 633
Score = 650 bits (328), Expect = 0.0
Identities = 548/620 (88%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 452 catgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgactcgagct 511
|||||||||||||||||||||||| || ||||| |||||||||||||| | ||| |||
Sbjct: 633 catgtcggggatcctcttgtcgctgtcgtcgtacccttcgccgtagaattctttcgcgct 574
Query: 512 cacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagacctctgt 571
|||||| |||| ||||| |||||||| | |||||||||||| || || |||||||||||
Sbjct: 573 cacgtcgatcacaggctcctccagcgggggctctcctgagaccttagcatagacctctgt 514
Query: 572 catcatttgggccaactccctaacggtaacttcattgttcggattcccaacattgaagat 631
|||||||| |||||||||||||| || |||||||||| || |||||||| ||||| ||
Sbjct: 513 catcatttcagccaactccctaacagtgacttcattgtcagggttcccaacgttgaatat 454
Query: 632 gtggccattggctcgagcaggattttcaatcatcagcactacagcttcgatagcatcctt 691
|| ||||||||||||||||| |||||||||||||| | |||||||| || ||||||||
Sbjct: 453 atgaccattggctcgagcagggttttcaatcatcagaagaacagcttcaatggcatcctt 394
Query: 692 gatgtagacaaaggttctctgagactgacccccatcaacaagcttcaagggctctctccg 751
|||||| ||||| |||||||| |||| || ||||| || ||||||| ||||||||| ||
Sbjct: 393 gatgtaaacaaaagttctctgggactcgccgccatcgacgagcttcaggggctctctgcg 334
Query: 752 gagcagattgttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgac 811
|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 333 taggagattgttgctgaagcaagccaaaacccgaggaacaccctcgctaggaccatcaac 274
Query: 812 accaggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattc 871
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 273 gccaggaatgaagtccatccttggcccaatccaattgaaaggtctcacgatcgtgaaatc 214
Query: 872 aaggccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaagc 931
||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 213 aaggccattttctgcgccttcagcaaaaacaagcctctcaataagctgctttgcgcacgc 154
Query: 932 ataggaccatctttgtttcacgattggaccaaaaatacagggcgactcatcttctttaag 991
|||||||||||| |||||||| ||||||||||| || ||||| |||||||||||| | ||
Sbjct: 153 ataggaccatctctgtttcacaattggaccaaagatgcagggtgactcatcttctgtcag 94
Query: 992 aacataaaattcaggttccttgcggagcgggtggtctttggggaggaagctgccgatggt 1051
||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 93 cacataaaattcagcttccttgcggagggggtgatc-ctggggaggaagctgccgatggt 35
Query: 1052 cttgccatagacctcgcacg 1071
||||||||||||||||||||
Sbjct: 34 cttgccatagacctcgcacg 15
>gb|BI960436.1|BI960436 HVSMEn0024J13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024J13f,
mRNA sequence
Length = 660
Score = 632 bits (319), Expect = e-180
Identities = 463/511 (90%)
Strand = Plus / Minus
Query: 954 attggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttccttg 1013
||||||||||| || ||||| |||||||||||| | || ||||||||||||| |||| ||
Sbjct: 657 attggaccaaagatgcagggtgactcatcttctgtcagcacataaaattcagcttccctg 598
Query: 1014 cggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtg 1073
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cggagggggtgatccttggggaggaagctgccgatggtcttgccatagacctcgcacgtg 538
Query: 1074 gagaagtggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcg 1133
||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| || |||
Sbjct: 537 gagaagtggatcagacgcttgccgttctccgagcagtacttgaccaccgggagcgcgtcg 478
Query: 1134 atgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagata 1193
||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 477 atgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgcagatc 418
Query: 1194 gccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattc 1253
||||||||||| || ||||||||||||||||||| ||| |||||||| | || ||| |||
Sbjct: 417 gccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtcgttc 358
Query: 1254 ttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacg 1313
|||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 357 ttgatgttgaggcggtggaaggagatgcgcccggcgaggtggggcggcggcgggtcgacg 298
Query: 1314 aggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggcc 1373
|||||||||||||| ||| |||| |||||||||||||||||||| || | |||||||||
Sbjct: 297 aggtggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcggcc 238
Query: 1374 atgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtg 1433
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 237 atgagcttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggtg 178
Query: 1434 aggggcgcgacggagttgccgtccagatcca 1464
|| ||||| |||| | ||||||||||||||
Sbjct: 177 agcggcgccacggcgccgccgtccagatcca 147
>gb|CA019987.1|CA019987 HV14A03r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A03
5-PRIME, mRNA sequence
Length = 655
Score = 620 bits (313), Expect = e-176
Identities = 454/501 (90%)
Strand = Plus / Minus
Query: 960 ccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttccttgcggagc 1019
||||| || ||||| |||||||||||| | || ||||||||||||| ||||||||||||
Sbjct: 655 ccaaagatgcagggtgactcatcttctgtcagcacataaaattcagcttccttgcggagg 596
Query: 1020 gggtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaag 1079
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gggtgatccttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaag 536
Query: 1080 tggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaag 1139
||||| |||||||||| |||||| ||||||||||||||||| ||||| || |||||||||
Sbjct: 535 tggatcagacgcttgccgttctccgagcagtacttgaccaccgggagcgcgtcgatgaag 476
Query: 1140 ttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgcc 1199
||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct: 475 ttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgcagatcgccgcc 416
Query: 1200 aggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgatg 1259
||||| || ||||||||||||||||||| ||| |||||||| | || ||| |||||||||
Sbjct: 415 aggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtcgttcttgatg 356
Query: 1260 ttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtgg 1319
|| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 355 ttgaggcggtggaaggagatgcgcccggcgaggtggggcggcggcgggtcgacgaggtgg 296
Query: 1320 cggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagc 1379
|||||||| ||| |||| |||||||||||||||||||| || | |||||||||||||||
Sbjct: 295 cggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcggccatgagc 236
Query: 1380 ttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggc 1439
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 235 ttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatggtgagcggc 176
Query: 1440 gcgacggagttgccgtccaga 1460
|| |||| | ||||||||||
Sbjct: 175 gccacggcgccgccgtccaga 155
>gb|AL506128.1|AL506128 AL506128 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02C03T 5',
mRNA sequence
Length = 670
Score = 618 bits (312), Expect = e-175
Identities = 470/520 (90%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 947 tttcacgattggaccaaaaataca-gggcgactcatcttctttaagaacataaaattcag 1005
|||||| ||||||||||| || || ||| |||||||||||| | || |||||||||||||
Sbjct: 668 tttcacaattggaccaaagatgcaagggtgactcatcttctgtcagcacataaaattcag 609
Query: 1006 gttccttgcgga-gcgggtggtctttggggaggaagctgccgatggtcttgccatagacc 1064
||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttccttgcggaagggggtgatccttggggaggaagctgccgatggtcttgccatagacc 549
Query: 1065 tcgcacgtggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactggg 1124
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||
Sbjct: 548 tcgcacgtggagaagtggatcagacgcttgccgttctccgagcagtacttgaccaccggg 489
Query: 1125 agtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggc 1184
|| || |||||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct: 488 agcgcgtcgatgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggc 429
Query: 1185 gtgcagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctg 1244
|||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||| | |
Sbjct: 428 gtgcagatcgccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgg 369
Query: 1245 gagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcg 1304
| ||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 368 gggtcgttcttgatgttgaggcggtggaaggagatgcgcccggcgaggtggggcggcggc 309
Query: 1305 gggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgc 1364
||||||||||||||||||||||| ||| |||| |||||||||||||||||||| || |
Sbjct: 308 gggtcgacgaggtggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgg 249
Query: 1365 gtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatg 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 248 gtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccgatcatg 189
Query: 1425 cagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 188 cagatggtgagcggcgccacggcgccgccgtccagatcca 149
>gb|BJ463324.1|BJ463324 BJ463324 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26p10 5', mRNA sequence
Length = 595
Score = 585 bits (295), Expect = e-165
Identities = 490/555 (88%)
Strand = Plus / Minus
Query: 510 ctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagacctct 569
|||||||| |||| ||||| |||||||| | |||||||||||| || || |||||||||
Sbjct: 578 ctcacgtcgatcacaggctcctccagcgggggctctcctgagaccttagcatagacctct 519
Query: 570 gtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacattgaag 629
|||||||||| |||||||||||||| || |||||||||| || |||||||| ||||||
Sbjct: 518 gtcatcatttcagccaactccctaacagtgacttcattgtcagggttcccaacgttgaag 459
Query: 630 atgtggccattggctcgagcaggattttcaatcatcagcactacagcttcgatagcatcc 689
|| || ||||||||||||||||| ||||||||||||| | |||||||| || ||||||
Sbjct: 458 atatgaccattggctcgagcagggttttcaatcatcaaaagaacagcttcaatggcatcc 399
Query: 690 ttgatgtagacaaaggttctctgagactgacccccatcaacaagcttcaagggctctctc 749
|||||||| ||||| |||||||| |||| || |||||||| ||||||| |||||||||
Sbjct: 398 ttgatgtaaacaaaagttctctgggactcgccgccatcaacgagcttcaggggctctctg 339
Query: 750 cggagcagattgttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcg 809
|| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 cgtaagagattgttgctgaagcaagccaaaacccgaggaacaccctcgctaggaccatca 279
Query: 810 acaccaggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaat 869
|| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 278 acgccaggaatgaagtccatccttggcccaatccaattgaaaggtctcacaatcgtgaaa 219
Query: 870 tcaaggccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaa 929
||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 218 tcaaggccattttctgcgccttcagcaaaaacaagcctttcaataagctgctttgcgcac 159
Query: 930 gcataggaccatctttgtttcacgattggaccaaaaatacagggcgactcatcttcttta 989
|||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||| |
Sbjct: 158 gcataggaccatctctgtttcacaattggaccaaagatgcagggtgactcatcttctgtc 99
Query: 990 agaacataaaattcaggttccttgcggagcgggtggtctttggggaggaagctgccgatg 1049
|| ||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 98 agcacataaaattcagcttccttgcggagggggtgatccttggggaggaagctgccgatg 39
Query: 1050 gtcttgccatagacc 1064
|||||||||||||||
Sbjct: 38 gtcttgccatagacc 24
>gb|BI957842.1|BI957842 HVSMEn0011K03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0011K03f,
mRNA sequence
Length = 1321
Score = 555 bits (280), Expect = e-156
Identities = 421/468 (89%)
Strand = Plus / Minus
Query: 890 ttcagcaaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctttgttt 949
||||||||| | |||||||||||||| ||||| ||||| ||||||| ||||||||||||
Sbjct: 475 ttcagcaaaagctagcctctcaataagctgctttgcgcacgcataggcccatctttgttt 416
Query: 950 cacgattggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttc 1009
||| ||||||||||| || ||||| |||||||||||| | || ||||||||||||| |||
Sbjct: 415 cacaattggaccaaagatgcagggtgactcatcttctgtcagcacataaaattcagcttc 356
Query: 1010 cttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgca 1069
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttgcggagggggtgatccttggggaggaagctgccgatggtcttgccatagacctcgca 296
Query: 1070 cgtggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgc 1129
||||||||||||||| |||||||| | |||||| ||||||||||||||||| ||||| ||
Sbjct: 295 cgtggagaagtggatcagacgcttcccgttctccgagcagtacttgaccaccgggagcgc 236
Query: 1130 atcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgca 1189
|||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct: 235 gtcgatgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgca 176
Query: 1190 gatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtc 1249
||| ||||||||||| || ||||||||||||||||||| ||| |||||||| | || |||
Sbjct: 175 gatcgccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtc 116
Query: 1250 attcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtc 1309
||||||||||| ||||||||||||||||||||||| ||| |||| ||||||| |||||
Sbjct: 115 gttcttgatgttgaggcggtggaaggagatgcgcccggcgcggtggggcggcgacgggtc 56
Query: 1310 gacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgac 1357
|||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 55 gacgaggtggcggatcttgtcggagtagacgtcgacggcgaggacgac 8
>gb|BI950324.1|BI950324 HVSMEl0020E03f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0020E03f, mRNA sequence
Length = 469
Score = 486 bits (245), Expect = e-135
Identities = 392/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Minus
Query: 792 ccctcgctaggaccatcgacaccaggaatgaaatccatccttggcccaatccaattaaaa 851
||||||||||| ||||| | ||||||||||| |||||||||||||||||| ||| |||
Sbjct: 436 ccctcgctagggccatcaccgccaggaatgaagtccatccttggcccaatc-aatggaaa 378
Query: 852 ggtctcacgattgtgaattcaaggccattttctgcaccttcagcaaatacaagcc-tctc 910
| | ||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||| ||||
Sbjct: 377 gttttcacgatcgtgaaatcaaggccattgtctgcgccttcagcaaa-acaagccctctc 319
Query: 911 aataagttgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaataca 970
|||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || ||
Sbjct: 318 aataagctgctttgcgcacgcataggaccatctctgtttcacaattggaccaaagatgca 259
Query: 971 gggcgactcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtcttt 1030
||| |||||||||||| | || ||||||||||||| |||||||||||| ||||| || ||
Sbjct: 258 gggtgactcatcttctgtcagcacataaaattcagcttccttgcggagggggtgatcctt 199
Query: 1031 ggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacg 1090
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 198 ggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatcagacg 139
Query: 1091 cttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagat 1150
||||| |||||| ||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 138 cttgccgttctccgagcagtacttgaccaccgggagcgcgtcgatgaagttgctgtagat 79
Query: 1151 ggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggt 1210
|||||| || || || ||||||||||||||||||| |||||| ||||||||||| || ||
Sbjct: 78 ggtgtcgagcggccgcgtgttgtagtccgccggcgcgcagatcgccgccaggtttatcgt 19
Query: 1211 cagatcggccatcttga 1227
|||||||||||||||||
Sbjct: 18 cagatcggccatcttga 2
>gb|BQ765070.1|BQ765070 EBca01_SQ005_P13_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_P13 5', mRNA sequence
Length = 458
Score = 482 bits (243), Expect = e-134
Identities = 393/443 (88%)
Strand = Plus / Minus
Query: 615 ttcccaacattgaagatgtggccattggctcgagcaggattttcaatcatcagcactaca 674
|||||||| |||||||| || ||||||||||||||||| ||||||||||||| | |||
Sbjct: 454 ttcccaacgttgaagatatgaccattggctcgagcagggttttcaatcatcaaaagaaca 395
Query: 675 gcttcgatagcatccttgatgtagacaaaggttctctgagactgacccccatcaacaagc 734
||||| || |||||||||||||| ||||| |||||||| |||| || |||||||| |||
Sbjct: 394 gcttcaatggcatccttgatgtaaacaaaagttctctgggactcgccgccatcaacgagc 335
Query: 735 ttcaagggctctctccggagcagattgttactgaagcaagccaaaacccgaggcacaccc 794
|||| ||||| ||| || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 334 ttcaggggctttctgcgtaagagattgttgctgaagcaagccaaaacccgaggaacaccc 275
Query: 795 tcgctaggaccatcgacaccaggaatgaaatccatccttggcccaatccaattaaaaggt 854
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 274 tcgctaggaccatcaacgccaggaatgaagtccatccttggcccaatccaattgaaaggt 215
Query: 855 ctcacgattgtgaattcaaggccattttctgcaccttcagcaaatacaagcctctcaata 914
||||| || ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 214 ctcacaatcgtgaaatcaaggccattttctgcgccttcagcaaaaacaagcctttcaata 155
Query: 915 agttgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaatacagggc 974
|| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 154 agctgctttgcgcacgcataggaccatctctgtttcacaattggaccaaagatgcagggt 95
Query: 975 gactcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttgggg 1034
|||||||||||| | || ||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 94 gactcatcttctgtcagcacataaaattcagcttccttgcggagggggtgatccttgggg 35
Query: 1035 aggaagctgccgatggtcttgcc 1057
|||||||||||||||||||||||
Sbjct: 34 aggaagctgccgatggtcttgcc 12
>gb|BG299537.1|BG299537 HVSMEa0020K13f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0020K13f, mRNA sequence
Length = 607
Score = 476 bits (240), Expect = e-132
Identities = 407/459 (88%), Gaps = 3/459 (0%)
Strand = Plus / Minus
Query: 1007 ttccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctc 1066
|||||||||||| |||| || ||||| |||||||||||||||||||||||| |||||||
Sbjct: 604 ttccttgcggagggggttatccttgggaaggaagctgccgatggtcttgcca-agacctc 546
Query: 1067 gcacgtggagaagtggatgagacgcttgctgttctcggagca-gtacttgaccactggga 1125
||||||||| |||||||| |||||||||| ||||||| |||| |||||||||||| ||||
Sbjct: 545 gcacgtggaaaagtggatcagacgcttgccgttctcg-agcaagtacttgaccaccggga 487
Query: 1126 gtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcg 1185
| | |||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct: 486 gcgggtcgatgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcg 427
Query: 1186 tgcagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctgg 1245
||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||| | ||
Sbjct: 426 tgcagatcgccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcggg 367
Query: 1246 agtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcgg 1305
||| ||||||||||| |||||||||||||| |||||||| || |||| ||||||| |
Sbjct: 366 ggtcgttcttgatgttgaggcggtggaaggacatgcgcccggcaaggttgggcggcggcg 307
Query: 1306 ggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcg 1365
|||| ||||||||||||||||| ||| |||| |||||||||||||||||||| || | |
Sbjct: 306 ggtcnacgaggtggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctggg 247
Query: 1366 tctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgc 1425
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 246 tttcggccatgagcttttcgcagaggtgggagccgatgaagccgccggcgccgatcatgc 187
Query: 1426 agatggtgaggggcgcgacggagttgccgtccagatcca 1464
|||||||||| ||||| |||| | ||||||||||||||
Sbjct: 186 agatggtgagcggcgccacggcgccgccgtccagatcca 148
>gb|BM444118.1|BM444118 EBem09_SQ004_D11_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_D11 5', mRNA sequence
Length = 449
Score = 452 bits (228), Expect = e-125
Identities = 387/440 (87%)
Strand = Plus / Minus
Query: 525 ggctcatccagcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggcc 584
||||| |||||||| | |||||||||||| || || ||||||||||||||||| | |||
Sbjct: 441 ggctcctccagcgggggctctcctgagaccttagcatagacctctgtcatcatatcagcc 382
Query: 585 aactccctaacggtaacttcattgttcggattcccaacattgaagatgtggccattggct 644
||||||||||| || |||||||||| || |||||||| |||||||| || |||||||||
Sbjct: 381 aactccctaacagtgacttcattgtcagggttcccaacgttgaagatatgaccattggct 322
Query: 645 cgagcaggattttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaag 704
|||||||| ||||||||||||| | |||||||| || |||||||||||||| |||||
Sbjct: 321 cgagcagggttttcaatcatcaaaagaacagcttcaatggcatccttgatgtaaacaaaa 262
Query: 705 gttctctgagactgacccccatcaacaagcttcaagggctctctccggagcagattgtta 764
|||||||| |||| || |||||||| ||||||| ||||||||| || | ||||||||
Sbjct: 261 gttctctgggactcgccgccatcaacgagcttcaggggctctctgcgtaagagattgttg 202
Query: 765 ctgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaatgaaa 824
||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 201 ctgaagcaagccaaaacccgaggaacaccctcgctaggaccatcaacgccaggaatgaag 142
Query: 825 tccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccattttct 884
||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct: 141 tccatccttggcccaatccaattgaaaggtctcacaatcgtgaaatcaaggccattttct 82
Query: 885 gcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctt 944
|| ||||||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 81 gcgccttcagcaaaaacaagcctttcaataagctgctttgcgcacgcataggaccatctc 22
Query: 945 tgtttcacgattggaccaaa 964
|||||||| |||||||||||
Sbjct: 21 tgtttcacaattggaccaaa 2
>gb|BE456081.2|BE456081 HVSMEg0019L02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019L02f, mRNA sequence
Length = 876
Score = 448 bits (226), Expect = e-124
Identities = 425/489 (86%), Gaps = 2/489 (0%)
Strand = Plus / Minus
Query: 977 ctcatcttctttaagaacataaaattcaggttccttgcggagcgggtgg-tctttgggga 1035
|||||||||| | || ||||||||||||| | |||| ||||| |||| | || | ||| |
Sbjct: 665 ctcatcttctgtcagcacataaaattcagctccctt-cggagggggttgatcctggggaa 607
Query: 1036 ggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgcttgc 1095
| |||||||||||||||| |||||||||||||||||| |||||||||| | |||| |
Sbjct: 606 gaaagctgccgatggtctgcccatagacctcgcacgtgaagaagtggatcaaccgctgcc 547
Query: 1096 tgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagatggtgt 1155
||||| ||||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct: 546 gtttctccgagcagtacttgaccacgggaagcgcgtcgatgaagttgctgtagatggtgt 487
Query: 1156 caagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagat 1215
| || | || |||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 486 cgagcgcccgcgtgttgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagat 427
Query: 1216 cggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtggaagg 1275
|||||||||||| ||| |||||||| | || ||| ||||||||||| ||||||||||||
Sbjct: 426 cggccatcttgacgaggccctcgaggcgggggtcgttcttgatgttgaggcggtggaaga 367
Query: 1276 agatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagt 1335
|||||||||| || ||||| | ||||| ||||| ||||||||||||||||| ||| |||
Sbjct: 366 agatgcgcccggcaaggtgggacggcggcgggtcnacgaggtggcggatcttgtcggagt 307
Query: 1336 atacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtggg 1395
| |||||||||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 306 agacgtcgacggcgaggacgacgtgctgggtctcggccatgagcttctcgcagaggtggg 247
Query: 1396 agccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgt 1455
|||||||||||||||||||||| ||||||||||||||||| ||||| |||| | |||||
Sbjct: 246 agccgatgaagccgccggcgccgatcatgcagatggtgagcggcgccacggcgccgccgt 187
Query: 1456 ccagatcca 1464
|||||||||
Sbjct: 186 ccagatcca 178
>gb|BG417706.1|BG417706 HVSMEk0019D05f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019D05f, mRNA sequence
Length = 445
Score = 422 bits (213), Expect = e-116
Identities = 386/444 (86%)
Strand = Plus / Minus
Query: 402 tccttgagaggcgtctttgggttccaacctagctgcttgttgattatagtcatgtcgggg 461
||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 444 tccttgagaggggtcttggggttccaccctagctgcttgttgatcagggtcatgtcgggg 385
Query: 462 atcctcttgtcgctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatc 521
|||||||||||||| || ||||| |||||||||||||| | ||| ||||||||| |||
Sbjct: 384 atcctcttgtcgctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatc 325
Query: 522 atgggctcatccagcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgg 581
| ||||| |||||||| | |||||||||||| || || |||||||||||||||||||
Sbjct: 324 acaggctcctccagcgggggctctcctgagaccttagcatagacctctgtcatcatttca 265
Query: 582 gccaactccctaacggtaacttcattgttcggattcccaacattgaagatgtggccattg 641
|||||||||||||| || |||||||||| || |||||||| ||||| || || ||||||
Sbjct: 264 gccaactccctaacagtgacttcattgtcagggttcccaacgttgaatatatgaccattg 205
Query: 642 gctcgagcaggattttcaatcatcagcactacagcttcgatagcatccttgatgtagaca 701
||||||||||| |||||||||||||| | |||||||| || |||||||||||||| |||
Sbjct: 204 gctcgagcagggttttcaatcatcagaagaacagcttcaatggcatccttgatgtaaaca 145
Query: 702 aaggttctctgagactgacccccatcaacaagcttcaagggctctctccggagcagattg 761
|| |||||||| |||| || ||||| || ||||||| ||||||||| || || ||||||
Sbjct: 144 aaagttctctgggactcgccgccatcgacgagcttcaggggctctctgcgtaggagattg 85
Query: 762 ttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaatg 821
|| |||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 84 ttgntgaagcaagccaaaacccgaggaacaccctcgctaggaccatcaacgccaggaatg 25
Query: 822 aaatccatccttggcccaatccaa 845
|| |||||||||||||||||||||
Sbjct: 24 aagtccatccttggcccaatccaa 1
>gb|CA027982.1|CA027982 HZ60K04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60K04
5-PRIME, mRNA sequence
Length = 484
Score = 416 bits (210), Expect = e-115
Identities = 303/334 (90%)
Strand = Plus / Minus
Query: 1131 tcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcag 1190
|||||||||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 479 tcgatgaagttgctgtagatggtgtcgagcggccgcgtgttgtagtccgccggcgtgcag 420
Query: 1191 atagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtca 1250
|| ||||||||||| || ||||||||||||||||||| ||| |||||||| | || |||
Sbjct: 419 atcgccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtcg 360
Query: 1251 ttcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcg 1310
||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 359 ttcttgatgttgaggcggtggaaggagatgcgcccggcgaggtggggcggcggcgggtcg 300
Query: 1311 acgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcg 1370
||||||||||||||||| ||| |||| |||||||||||||||||||| || | ||||||
Sbjct: 299 acgaggtggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcg 240
Query: 1371 gccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatg 1430
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 239 gccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccgatcatgcagatg 180
Query: 1431 gtgaggggcgcgacggagttgccgtccagatcca 1464
||||| ||||| |||| | ||||||||||||||
Sbjct: 179 gtgagcggcgccacggcgccgccgtccagatcca 146
>gb|BM373982.2|BM373982 EBma03_SQ003_E19_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_E19 5', mRNA sequence
Length = 450
Score = 377 bits (190), Expect = e-103
Identities = 271/298 (90%)
Strand = Plus / Minus
Query: 1167 gtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttg 1226
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 447 gtgttgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagatcggccatcttg 388
Query: 1227 atgagcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgcccc 1286
| ||| |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 387 acgaggccctcgaggcgggggtcgttcttgatgttgaggcggtggaaggagatgcgcccg 328
Query: 1287 gcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacg 1346
|||||||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 327 gcgaggtggggcggcggcgggtcgacgaggtggcggatcttgtcggagtagacgtcgacg 268
Query: 1347 gcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaag 1406
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcgaggacgacgtgctgggtctcggccatgagcttctcgcagaggtgggagccgatgaag 208
Query: 1407 ccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 207 ccgccggcgccgatcatgcagatggtgagcggcgccacggcgccgccgtccagatcca 150
>gb|BM374131.2|BM374131 EBma03_SQ003_L19_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_L19 5', mRNA sequence
Length = 509
Score = 377 bits (190), Expect = e-103
Identities = 271/298 (90%)
Strand = Plus / Minus
Query: 1167 gtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttg 1226
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 509 gtgttgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagatcggccatcttg 450
Query: 1227 atgagcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgcccc 1286
| ||| |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 449 acgaggccctcgaggcgggggtcgttcttgatgttgaggcggtggaaggagatgcgcccg 390
Query: 1287 gcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacg 1346
|||||||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 389 gcgaggtggggcggcggcgggtcgacgaggtggcggatcttgtcggagtagacgtcgacg 330
Query: 1347 gcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaag 1406
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcgaggacgacgtgctgggtctcggccatgagcttctcgcagaggtgggagccgatgaag 270
Query: 1407 ccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 269 ccgccggcgccgatcatgcagatggtgagcggcgccacggcgccgccgtccagatcca 212
>gb|BI956263.1|BI956263 HVSMEn0001M04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0001M04f,
mRNA sequence
Length = 605
Score = 363 bits (183), Expect = 1e-098
Identities = 314/358 (87%)
Strand = Plus / Minus
Query: 1107 cagtacttgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcga 1166
|||||||||||||| || || || || || ||||| ||||||||||||||| | ||
Sbjct: 493 cagtacttgaccaccggaagcgcgtcaataaagttcttgtagatggtgtcaaccgcccgc 434
Query: 1167 gtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttg 1226
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 433 gtgttgtagtccgccggcgtgcagatcgccgccaggtttatcgtcagatcggccatcttg 374
Query: 1227 atgagcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgcccc 1286
| ||| |||||||| | || ||| ||||||||||| || ||||||||||||||||||||
Sbjct: 373 acgaggccctcgaggcgggggtcgttcttgatgttgagccggtggaaggagatgcgcccg 314
Query: 1287 gcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacg 1346
|| ||||| ||||||| ||||| |||||||| |||||||| ||| |||| |||||||||
Sbjct: 313 gcaaggtggggcggcggcgggtcnacgaggtgccggatcttgtcggagtagacgtcgacg 254
Query: 1347 gcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaag 1406
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcgaggacgacgtgctgggtctcggccatgagcttctcgcagaggtgggagccgatgaag 194
Query: 1407 ccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatcca 1464
||||||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||
Sbjct: 193 ccgccggcgccgatcatgcagatggtgagcggcgccacggcgccgccgtccagatcca 136
>gb|BU974454.1|BU974454 HB27P18r BC Hordeum vulgare subsp. vulgare cDNA clone HB27P18
5-PRIME, mRNA sequence
Length = 458
Score = 335 bits (169), Expect = 3e-090
Identities = 331/385 (85%)
Strand = Plus / Minus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 396 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 337
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 336 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 277
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| ||||||||| |||| ||||| |||
Sbjct: 276 ctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatcacaggctcctcc 217
Query: 534 agcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcccta 593
||||| | |||||||||||| || || ||||||||||||||||||| ||||||||||||
Sbjct: 216 agcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcccta 157
Query: 594 acggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagcagga 653
|| || |||||||||| || |||||||| ||||| || || |||||||||||||||||
Sbjct: 156 acagtgacttcattgtcagggttcccaacgttgaatatatgaccattggctcgagcaggg 97
Query: 654 ttttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctctga 713
|||||||||||||| | |||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 96 ttttcaatcatcagaagaacagcttcaatggcatccttgatgtaaacaaaagttctctgg 37
Query: 714 gactgacccccatcaacaagcttca 738
|||| || ||||| || |||||||
Sbjct: 36 gactcgccgccatcgacgagcttca 12
>gb|CK123655.1|CK123655 BES1824104n08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N084 5-PRIME, mRNA sequence
Length = 704
Score = 335 bits (169), Expect = 3e-090
Identities = 331/385 (85%)
Strand = Plus / Minus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 401 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 342
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 341 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 282
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| ||||||||| |||| ||||| |||
Sbjct: 281 ctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatcacaggctcctcc 222
Query: 534 agcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcccta 593
||||| | |||||||||||| || || ||||||||||||||||||| ||||||||||||
Sbjct: 221 agcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcccta 162
Query: 594 acggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagcagga 653
|| || |||||||||| || |||||||| ||||| || || |||||||||||||||||
Sbjct: 161 acagtgacttcattgtcagggttcccaacgttgaatatatgaccattggctcgagcaggg 102
Query: 654 ttttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctctga 713
|||||||||||||| | |||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 101 ttttcaatcatcagaagaacagcttcaatggcatccttgatgtaaacaaaagttctctgg 42
Query: 714 gactgacccccatcaacaagcttca 738
|||| || ||||| || |||||||
Sbjct: 41 gactcgccgccatcgacgagcttca 17
>gb|BM368508.2|BM368508 EBem08_SQ002_I21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_I21 5', mRNA sequence
Length = 424
Score = 313 bits (158), Expect = 1e-083
Identities = 242/270 (89%)
Strand = Plus / Minus
Query: 1195 ccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattct 1254
|||||||||| || ||||||||||||||||||| ||| |||||||| | || ||| ||||
Sbjct: 417 ccgccaggtttatcgtcagatcggccatcttgacgaggccctcgaggcgggggtcgttct 358
Query: 1255 tgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacga 1314
||||||| || |||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct: 357 tgatgttgagccggtggaaggagatgcgcccggcgaggtggggcggcggcgggtcgacga 298
Query: 1315 ggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggcca 1374
||||||||||||| ||| |||| |||||||||||||||||||| || | ||||||||||
Sbjct: 297 ggtggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcggcca 238
Query: 1375 tgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtga 1434
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 237 tgagcttctcgcagaggtgggagccgatgaacccgccggcgccgatcatgcagatggtga 178
Query: 1435 ggggcgcgacggagttgccgtccagatcca 1464
| ||||| |||| | ||||||||||||||
Sbjct: 177 gcggcgccacggcgccgccgtccagatcca 148
>gb|AV917643.1|AV917643 AV917643 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10n14 3', mRNA sequence
Length = 663
Score = 301 bits (152), Expect = 4e-080
Identities = 302/352 (85%)
Strand = Plus / Plus
Query: 351 acagcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgaga 410
|||||||| ||||| ||||||||||| || ||||| || ||||||||||| |||||||||
Sbjct: 312 acagcttccttgtaggtcttgtgctggtaggtcagagtcgtctccagcaggtccttgaga 371
Query: 411 ggcgtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttg 470
|| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 372 ggggtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttg 431
Query: 471 tcgctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctca 530
|| || || ||||| |||||||||||||| | ||| |||||||| |||| |||||
Sbjct: 432 tcactgtcgtcgtacccttcgccgtagaattctttcgcactcacgtcgatcacaggctcc 491
Query: 531 tccagcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcc 590
|||||||| | |||||||||||| || || ||||||||||||||||||| |||||||||
Sbjct: 492 tccagcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcc 551
Query: 591 ctaacggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagca 650
||||| || |||||||||| || |||||||| |||||||| || |||||||||||||||
Sbjct: 552 ctaacagtgacttcattgtcagggttcccaacgttgaagatatgaccattggctcgagca 611
Query: 651 ggattttcaatcatcagcactacagcttcgatagcatccttgatgtagacaa 702
|| ||||||||||||| | |||||||| || |||||||||||||| ||||
Sbjct: 612 gggttttcaatcatcaaaagaacagcttcaatggcatccttgatgtaaacaa 663
>gb|BJ462434.1|BJ462434 BJ462434 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28d08 5', mRNA sequence
Length = 380
Score = 295 bits (149), Expect = 2e-078
Identities = 304/356 (85%)
Strand = Plus / Minus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||| ||||||||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 380 gcttccttgtaggtcttgtgctggtaggtcagagtcgtctccagcaggtccttnagaggg 321
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 320 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtca 261
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| |||||||| |||| ||||| |||
Sbjct: 260 ctgtcgtcgtacccttcgccgtagaattctttcgcactcacgtcgatcacaggctcctcc 201
Query: 534 agcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcccta 593
||||| | |||||||||||| || || ||||||||||||||||||| ||||||||||||
Sbjct: 200 agcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcccta 141
Query: 594 acggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagcagga 653
|| || |||||||||| || |||||||| |||||||| || |||||||||||||||||
Sbjct: 140 acagtgacttcattgtcagggttcccaacgttgaagatatgaccattggctcgagcaggg 81
Query: 654 ttttcaatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttct 709
||||||||||||| | |||||||| || |||||||||||||| ||||| |||||
Sbjct: 80 ttttcaatcatcaaaagaacagcttcaatggcatccttgatgtaaacaaaagttct 25
>gb|BJ465099.1|BJ465099 BJ465099 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m02 5', mRNA sequence
Length = 446
Score = 293 bits (148), Expect = 9e-078
Identities = 308/360 (85%), Gaps = 1/360 (0%)
Strand = Plus / Minus
Query: 351 acagcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgaga 410
|||||||| ||||| ||||||||||| || ||||| || ||||||||||| |||||||||
Sbjct: 383 acagcttccttgtaggtcttgtgctggtaggtcagagtcgtctccagcaggtccttgaga 324
Query: 411 ggcgtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttg 470
|| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 323 ggggtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttg 264
Query: 471 tcgctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctca 530
|| || || ||||| |||||||||||||| | ||| |||||||| |||| |||||
Sbjct: 263 tcactgtcgtcgtacccttcgccgtagaattctttcgcactcacgtcgatcacaggctcc 204
Query: 531 tccagcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcc 590
|||||||| | |||||||||||| || || ||||||||||||||||||| |||||||||
Sbjct: 203 tccagcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcc 144
Query: 591 ctaacggtaacttcattgttcggattcccaacattgaagatgtggccattggctcgagca 650
||||| || |||||||||| || |||||||| |||||||| || |||||||||||||||
Sbjct: 143 ctaacagtgacttcattgtcagggttcccaacgttgaagatatgaccattggctcgagca 84
Query: 651 ggattttcaatcatcagcactacagcttcgatagcat-ccttgatgtagacaaaggttct 709
|| ||||||||||||| | |||||||| || |||| |||||||||| ||||| |||||
Sbjct: 83 gggttttcaatcatcaaaagaacagcttcaatggcatnccttgatgtaaacaaaagttct 24
>gb|CB881530.1|CB881530 HM10B13w HM Hordeum vulgare subsp. vulgare cDNA clone HM10B13
3-PRIME, mRNA sequence
Length = 590
Score = 246 bits (124), Expect = 2e-063
Identities = 223/256 (87%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 334 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 393
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 394 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 453
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| ||||||||| |||| ||||| |||
Sbjct: 454 ctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatcacaggctcctcc 513
Query: 534 agcggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactcccta 593
||||| | |||||||||||| || || ||||||||||||||||||| ||||||||||||
Sbjct: 514 agcgggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactcccta 573
Query: 594 acggtaacttcattgt 609
|| || ||||||||||
Sbjct: 574 acagtgacttcattgt 589
>gb|BF620768.2|BF620768 HVSMEc0020M20f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0020M20f, mRNA sequence
Length = 678
Score = 234 bits (118), Expect = 7e-060
Identities = 202/230 (87%)
Strand = Plus / Minus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||| ||| |||| ||| | || ||| ||||||||||| ||| ||||
Sbjct: 393 cagatcggccatcttgacgaggcccttgaggcgggggtcgttcttgatgttgaggtggtg 334
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
|||||||||| | | |||||||| || |||| || || ||||||||||||||||| ||
Sbjct: 333 gaaggagatgtgtctggcgaggtggggaggcggcggctctacgaggtggcggatcttgtc 274
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
| |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 273 ggagtagacgtcgacggcgaggacgacgtggggggtctcggccatgagcttctcgcagag 214
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcg 1440
||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 213 gtgggagccgatgaagccgccggtgccgatcatgcagatggtgagcggcg 164
>gb|AL510624.1|AL510624 AL510624 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05I02u 3',
mRNA sequence
Length = 641
Score = 230 bits (116), Expect = 1e-058
Identities = 269/317 (84%), Gaps = 3/317 (0%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 284 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 343
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 344 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 403
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| ||||||||||| || | ||| ||||||||| |||| ||||| |||
Sbjct: 404 ctgtcgtcgtacccttcgccgtanaattctttcgcgctcacgtcgatcacaggctcctcc 463
Query: 534 agcggtgcctctcctgagacatt-tgcgtagacctctgtcatcatttgggccaactccct 592
||||| | |||||||||||| || || ||||||||||||||||||| |||||||||||
Sbjct: 464 agcgggggctctcctgagaccttaagcatagacctctgtcatcatttcagccaactccct 523
Query: 593 aacggtaacttcattgt-tcggattcccaacattgaagatgtggccattggct-cgagca 650
||| || |||||||||| || |||||||| || || || || |||||||| | ||||
Sbjct: 524 aacagtgacttcattgtcaggggttcccaacgttnaatatatgancattggctccaagca 583
Query: 651 ggattttcaatcatcag 667
|| ||||||||||||||
Sbjct: 584 gggttttcaatcatcag 600
>gb|AL509541.1|AL509541 AL509541 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02C03u 3',
mRNA sequence
Length = 534
Score = 220 bits (111), Expect = 1e-055
Identities = 211/243 (86%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 261 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 320
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 321 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 380
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| ||||||||| |||| ||||| |||
Sbjct: 381 ctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatcacaggctcctcc 440
Query: 534 agc-ggtgcctctcctgagacatttgcgtagacctctgtcatcatttgggccaactccct 592
||| || | |||||||||||| || || ||||||||||||||||||| |||||||||||
Sbjct: 441 agcggggggctctcctgagaccttagcatagacctctgtcatcatttcagccaactccct 500
Query: 593 aac 595
|||
Sbjct: 501 aac 503
>gb|CB880201.1|CB880201 HM05M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM05M21
3-PRIME, mRNA sequence
Length = 527
Score = 178 bits (90), Expect = 4e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 334 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 393
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 394 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 453
Query: 474 ctatcatcgtatccttcgccgtagaactgactcgagctcacgtcaatcatgggctcatcc 533
|| || ||||| |||||||||||||| | ||| ||||||||| |||| ||||| |||
Sbjct: 454 ctgtcgtcgtacccttcgccgtagaattctttcgcgctcacgtcgatcacaggctcctcc 513
Query: 534 agcggtgcctctcc 547
||||| | ||||||
Sbjct: 514 agcgggggctctcc 527
>gb|AJ433998.1|AJ433998 AJ433998 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071E08F1, mRNA sequence
Length = 431
Score = 165 bits (83), Expect = 6e-039
Identities = 128/143 (89%)
Strand = Plus / Minus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 143 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 84
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 83 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 24
Query: 474 ctatcatcgtatccttcgccgta 496
|| || ||||| |||||||||||
Sbjct: 23 ctgtcgtcgtacccttcgccgta 1
>gb|BJ468230.1|BJ468230 BJ468230 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m02 3', mRNA sequence
Length = 608
Score = 161 bits (81), Expect = 9e-038
Identities = 132/149 (88%)
Strand = Plus / Plus
Query: 351 acagcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgaga 410
|||||||| ||||| ||||||||||| || ||||| || ||||||||||| |||||||||
Sbjct: 455 acagcttccttgtaggtcttgtgctggtaggtcagagtcgtctccagcaggtccttgaga 514
Query: 411 ggcgtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttg 470
|| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 515 ggggtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttg 574
Query: 471 tcgctatcatcgtatccttcgccgtagaa 499
|| || || ||||| ||||||||||||||
Sbjct: 575 tcactgtcgtcgtacccttcgccgtagaa 603
>gb|CV060478.1|CV060478 BNEL58f1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL58f1 5' similar to OJ1656_A11.18,
mRNA sequence
Length = 559
Score = 147 bits (74), Expect = 1e-033
Identities = 110/122 (90%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 262 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 321
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 322 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 381
Query: 474 ct 475
||
Sbjct: 382 ct 383
>gb|BQ660689.1|BQ660689 HI04P09u HI Hordeum vulgare subsp. vulgare cDNA clone HI04P09
3-PRIME, mRNA sequence
Length = 501
Score = 143 bits (72), Expect = 2e-032
Identities = 108/120 (90%)
Strand = Plus / Plus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccagcagatccttgagaggc 413
||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 382 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccagcaggtccttgagaggg 441
Query: 414 gtctttgggttccaacctagctgcttgttgattatagtcatgtcggggatcctcttgtcg 473
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 442 gtcttggggttccaccctagctgcttgttgatcagggtcatgtcggggatcctcttgtcg 501
>gb|BQ463354.1|BQ463354 HI04P09r HI Hordeum vulgare subsp. vulgare cDNA clone HI04P09
5-PRIME, mRNA sequence
Length = 257
Score = 135 bits (68), Expect = 5e-030
Identities = 129/148 (87%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 1318 ggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatga 1377
|||||||||| ||| |||| |||||||||||||||||||| || | |||||| ||||||
Sbjct: 257 ggcggatcttgtcggagtagacgtcgacggcgaggacgacgtgctgggtctcgcccatga 198
Query: 1378 gcttctcgcagaggtgggagccgatgaag-ccgccggcgccaatcatgcagatggtgagg 1436
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 197 gcttctcgcagaggtgggagccgataaagaaaaccggcgccgatcatgcagatggtgagc 138
Query: 1437 ggcgcgacggagttgccgtccagatcca 1464
||||| |||| | ||||||||||||||
Sbjct: 137 ggcgccacggcgccgccgtccagatcca 110
>gb|AL450653.1|AL450653 AL450653 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03K02u 5', mRNA sequence
Length = 263
Score = 129 bits (65), Expect = 3e-028
Identities = 113/125 (90%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 1343 gacggcgaggacgacatggcgcgtctcggccatgagcttctcgca-gaggtgggagccga 1401
||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 gacggcgaggacgacgtgctgggtctcggccatgagcttctcgcatgaggtgggagccga 204
Query: 1402 tgaag-ccgccggcgccaatcatgcagatggtgagg-ggcgcgacggagttgccgtccag 1459
||||| ||||||||||| |||||||||||||||||| ||||| |||| | |||||||||
Sbjct: 203 tgaagnccgccggcgccgatcatgcagatggtgaggcggcgccacggcgccgccgtccag 144
Query: 1460 atcca 1464
|||||
Sbjct: 143 atcca 139
>gb|AJ435710.1|AJ435710 AJ435710 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087E09F1, mRNA sequence
Length = 568
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 354 gcttctttgtatgtcttgtgctgatacgtcagcgttgtctccag 397
||||| ||||||||||||||||| || ||||| || ||||||||
Sbjct: 48 gcttccttgtatgtcttgtgctggtaggtcagagtcgtctccag 5
>gb|BE421348.1|BE421348 HWM008.D05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM008.D05, mRNA sequence
Length = 1281
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 351 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 315
>gb|AL503252.1|AL503252 AL503252 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01F04T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 210 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 174
>gb|AL503569.1|AL503569 AL503569 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02K09T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 205 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 169
>gb|AL503719.1|AL503719 AL503719 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D04T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 250 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 214
>gb|AL504038.1|AL504038 AL504038 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01O21V 5', mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 238 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 202
>gb|AL504464.1|AL504464 AL504464 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05F22V 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 247 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 211
>gb|AL505043.1|AL505043 AL505043 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D11V 5', mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 248 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 212
>gb|AL505134.1|AL505134 AL505134 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I01V 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 218 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 182
>gb|AL505227.1|AL505227 AL505227 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07M19V 5', mRNA sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 233 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 197
>gb|AL505937.1|AL505937 AL505937 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09P13V 5', mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.057
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1372 ccatgagcttctcgcagaggtgggagccgatgaagcc 1408
|||||||||| ||| |||||| ||||||||||||||
Sbjct: 253 ccatgagcttgtcgacgaggtgcgagccgatgaagcc 217
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,502
Number of Sequences: 312970
Number of extensions: 179502
Number of successful extensions: 56246
Number of sequences better than 0.5: 174
Number of HSP's better than 0.5 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55875
Number of HSP's gapped (non-prelim): 348
length of query: 1644
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1625
effective length of database: 169,188,109
effective search space: 274930677125
effective search space used: 274930677125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)