BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa... 159 2e-037
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 159 2e-037
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 155 3e-036
gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA li... 155 3e-036
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 151 4e-035
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 135 3e-030
gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA li... 127 6e-028
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 117 6e-025
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 115 2e-024
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 115 2e-024
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 115 2e-024
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 115 2e-024
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 115 2e-024
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 115 2e-024
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 115 2e-024
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 115 2e-024
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 115 2e-024
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 109 1e-022
gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthe... 103 9e-021
gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. v... 103 9e-021
gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA li... 101 4e-020
gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA li... 101 4e-020
gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA li... 101 4e-020
gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA li... 90 1e-016
gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA li... 72 3e-011
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 70 1e-010
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 70 1e-010
gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. v... 70 1e-010
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 62 3e-008
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 60 1e-007
gb|BQ757764.1|BQ757764 EBem10_SQ005_C17_R embryo, 2 Day ger... 56 2e-006
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 48 5e-004
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 48 5e-004
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 48 5e-004
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 48 5e-004
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 48 5e-004
gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA li... 48 5e-004
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 48 5e-004
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 48 5e-004
gb|BU999201.1|BU999201 HI13K20r HI Hordeum vulgare subsp. v... 46 0.002
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 44 0.007
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 44 0.007
gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no... 40 0.11
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 40 0.11
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 40 0.11
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 40 0.11
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 40 0.11
>gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022K21f, mRNA sequence
Length = 507
Score = 159 bits (80), Expect = 2e-037
Identities = 310/389 (79%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 444 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 385
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 384 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 325
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || || || || |||| ||||
Sbjct: 324 agccggaacacgagctggaactccgcgctgaatttccgccgaccgaccgacacagccttc 265
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 264 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 205
Query: 612 gtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaac 671
||||| |||| ||||| | ||| ||||| || ||||||||||| || ||||||||||
Sbjct: 204 gtgtgtttggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacg 145
Query: 672 gaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcctgctct 731
| ||||||||| |||||||| ||||||||||| || || | | || ||| ||||||
Sbjct: 144 gcaagcactatctcaagaacggtgccacgcttcccggagtatttcaggggctcgtgctct 85
Query: 732 ttttcccaccatgactnncancttttctc 760
|| ||||||||||||| || ||||||||
Sbjct: 84 ttctcccaccatgactcccaacttttctc 56
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 159 bits (80), Expect = 2e-037
Identities = 310/389 (79%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 451 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 392
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 391 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 332
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || || || || |||| ||||
Sbjct: 331 agccggaacacgagctggaactccgcgctgaatttccgccgaccgaccgacacagccttc 272
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 271 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 212
Query: 612 gtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaac 671
||||| |||| ||||| | ||| ||||| || ||||||||||| || ||||||||||
Sbjct: 211 gtgtgtttggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacg 152
Query: 672 gaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcctgctct 731
| ||||||||| |||||||| ||||||||||| || || | | || ||| ||||||
Sbjct: 151 gcaagcactatctcaagaacggtgccacgcttcccggagtatttcaggggctcgtgctct 92
Query: 732 ttttcccaccatgactnncancttttctc 760
|| ||||||||||||| || ||||||||
Sbjct: 91 ttctcccaccatgactcccaacttttctc 63
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 168 atctgcagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaaca 227
||||||||||| | |||||||||||||| || |||||| | ||||||||| || ||
Sbjct: 654 atctgcagaccacggctgaaggcctggtt-aagagcatcngagtctggaactcagacacg 596
Query: 228 aacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
||||||||||| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 595 aacgggaaccacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 537
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 155 bits (78), Expect = 3e-036
Identities = 268/332 (80%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 399 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 340
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 339 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 280
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || || || || |||| ||||
Sbjct: 279 agccggaacacgagctggaactccgcgctgaatttccgccgaccgaccgacacagccttc 220
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 219 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 160
Query: 612 gtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaac 671
||||| |||| ||||| | ||| ||||| || ||||||||||| || ||||||||||
Sbjct: 159 gtgtgtttggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacg 100
Query: 672 gaaagcactatttcaagaacagtgccacgctt 703
| ||||||||| |||||||| |||||||||||
Sbjct: 99 gcaagcactatctcaagaacggtgccacgctt 68
>gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 5', mRNA sequence
Length = 413
Score = 155 bits (78), Expect = 3e-036
Identities = 268/332 (80%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 370 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 311
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 310 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 251
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || || || || |||| ||||
Sbjct: 250 agccggaacacgagctggaactccgcgctgaatttccgccgaccgaccgacacagccttc 191
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 190 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 131
Query: 612 gtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaac 671
||||| |||| ||||| | ||| ||||| || ||||||||||| || ||||||||||
Sbjct: 130 gtgtgtttggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacg 71
Query: 672 gaaagcactatttcaagaacagtgccacgctt 703
| ||||||||| |||||||| |||||||||||
Sbjct: 70 gcaagcactatctcaagaacggtgccacgctt 39
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 151 bits (76), Expect = 4e-035
Identities = 309/389 (79%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| |||||||| || || || |||||||| | ||||||||
Sbjct: 569 ccccatcccgttggcatgaaggcaaggatccacacgaatatgtcctggatcgtcatgtgg 510
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 509 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 450
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || || || || |||| ||||
Sbjct: 449 agccggaacacgagctggaactccgcgctgaatttccgccgaccgaccgacacagccttc 390
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 389 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 330
Query: 612 gtgtgagtggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaac 671
||||| |||| ||||| | ||| ||||| || ||||||||||| || ||||||||||
Sbjct: 329 gtgtgtttggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacg 270
Query: 672 gaaagcactatttcaagaacagtgccacgctttccagaatgcctaagannctcctgctct 731
| ||||||||| |||||||| ||||||||||| || || | | || ||| ||||||
Sbjct: 269 gcaagcactatctcaagaacggtgccacgcttcccggagtatttcaggggctcgtgctct 210
Query: 732 ttttcccaccatgactnncancttttctc 760
|| ||||||||||||| || ||||||||
Sbjct: 209 ttctcccaccatgactcccaacttttctc 181
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 135 bits (68), Expect = 3e-030
Identities = 149/176 (84%)
Strand = Plus / Minus
Query: 378 ccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgtgggatt 437
||||| |||||||| || |||||||| ||||||||||| | ||||||||||| | ||||
Sbjct: 654 ccagtcggcatgaaagcgaggatgcagacaaagatgtcgaggactgtcatgtgagcgatt 595
Query: 438 gctatcaagattatgataatagagataaacgttatgaatatcagccccttgatcagccgg 497
||| | |||||||| | || ||||| || ||||||||||| ||||||||||||||||||
Sbjct: 594 gctgttaagattataaggatggagatgaatgttatgaatataagccccttgatcagccgg 535
Query: 498 aacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttcat 553
|| || ||||||||||| || ||||| |||||||||| ||||| || ||||||||
Sbjct: 534 aagacgagctggaactccgcgctgaacctcctcctgccgactgacacggtcttcat 479
Score = 73.8 bits (37), Expect = 8e-012
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 627 ttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttca 686
||||||||||| ||||| || |||||||| || ||||| ||||| | || | |||||||
Sbjct: 402 ttcaaatgatacacaagcccgtactggtagatgaagaaacgcaatgctagaagtatttca 343
Query: 687 agaacagtgccacgctttccagaatgcctaagannctcctgctctttttcccaccatgac 746
|||| ||||||||||| ||||| |||| |||| |||||||||| |||||||| ||
Sbjct: 342 agaatggtgccacgcttcccagagtgccgaagaggtccctgctctttgtcccaccacgat 283
Query: 747 tnncancttttctctg 762
| || ||||||||||
Sbjct: 282 tcccagcttttctctg 267
>gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 5', mRNA sequence
Length = 300
Score = 127 bits (64), Expect = 6e-028
Identities = 189/232 (81%)
Strand = Plus / Minus
Query: 472 tgaatatcagccccttgatcagccggaacacaagctggaactctgcactgaatttcctcc 531
|||| ||||||||||||| ||||||| |||| ||||||||||| || ||||||||| ||
Sbjct: 300 tgaagatcagccccttgagcagccggnacacgagctggaactccgcgntgaatttccgcc 241
Query: 532 tgccaactgatacagtcttcatcacgagcaaaatgacaaagattatgacccacgagatgc 591
|| || || |||| ||||||||| ||||| |||| ||||| | ||||| || | ||
Sbjct: 240 gaccgaccgacacagccttcatcaccagcaatatgaagaagatgacaacccatgacaagc 181
Query: 592 nntaaaccagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatact 651
|||||||| |||||||| ||||| |||| ||||| | ||| ||||| || |||||||
Sbjct: 180 aataaaccaggacgctcttggtgtgtttggttatgttgagatggtaaacgagcccatact 121
Query: 652 ggtaaataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctt 703
|||| || |||||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 120 ggtagatgaagaagcgcacggcaagcactatctcaagaacggtgccacgctt 69
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 117 bits (59), Expect = 6e-025
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 118 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 177
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 178 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 237
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 238 cacgccaggaacgcgatcggggtgaagagcagcanccccatgatgatctc 287
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 215 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 274
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 275 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 334
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 335 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 384
Score = 89.7 bits (45), Expect = 1e-016
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 470 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 529
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 530 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 589
Query: 492 agccggaacacaagctggaactctgcactgaatttcc 528
||||||||||| ||||||||||| || ||||||||||
Sbjct: 590 agccggaacacgagctggaactccgcgctgaatttcc 626
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 218 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 277
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 278 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 337
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 338 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 387
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgca 403
|||||||| ||||||||||| |||||||||||
Sbjct: 473 ccccatcccgttggcatgaaggcaaggatgca 504
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 193 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 252
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 253 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 312
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 313 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 362
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 269 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 328
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 329 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 388
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 389 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 438
Score = 85.7 bits (43), Expect = 2e-015
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 524 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 583
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 584 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 643
Query: 492 agccggaacacaagctggaactctgcactgaattt 526
||||||||||| ||||||||||| || ||||||||
Sbjct: 644 agccggaacacgagctggaactccgcgctgaattt 678
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 239 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 298
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 299 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 358
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 359 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 408
Score = 89.7 bits (45), Expect = 1e-016
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 494 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 553
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 554 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 613
Query: 492 agccggaacacaagctggaactctgcactgaatttcc 528
||||||||||| ||||||||||| || ||||||||||
Sbjct: 614 agccggaacacgagctggaactccgcgctgaatttcc 650
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 223 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 282
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 283 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 342
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 343 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 392
Score = 87.7 bits (44), Expect = 5e-016
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 478 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 537
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 538 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 597
Query: 492 agccggaacacaagctggaactctgcactgaatttc 527
||||||||||| ||||||||||| || |||||||||
Sbjct: 598 agccggaacacgagctggaactccgcgctgaatttc 633
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 223 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 282
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 283 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 342
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 343 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 392
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 245 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 304
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 305 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 364
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 365 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 414
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 217 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 276
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 277 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 336
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 337 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 386
Score = 75.8 bits (38), Expect = 2e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 472 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 531
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 532 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 591
Query: 492 agccggaacacaagctggaact 513
||||||||||| ||||||||||
Sbjct: 592 agccggaacacgagctggaact 613
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 244 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 303
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 304 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 363
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 364 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 413
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 217 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 276
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 277 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 336
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 337 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 386
Score = 75.8 bits (38), Expect = 2e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 472 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 531
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 532 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 591
Query: 492 agccggaacacaagctggaact 513
||||||||||| ||||||||||
Sbjct: 592 agccggaacacgagctggaact 613
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 279 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 338
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 339 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 398
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 399 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 448
Score = 58.0 bits (29), Expect = 5e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 534 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 593
Query: 432 gggat 436
|||||
Sbjct: 594 gggat 598
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 303 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 362
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 363 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 422
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 423 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 472
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 308 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 367
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 368 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 427
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatctc 286
|| || ||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct: 428 cacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatctc 477
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 109 bits (55), Expect = 1e-022
Identities = 197/245 (80%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtcatgtgt 431
|||||||| ||||||||||| ||||||||||| || || |||||||| | ||||||||
Sbjct: 260 ccccatcccgttggcatgaaggcaaggatgcagacgaatatgtcctggatcgtcatgtgg 201
Query: 432 gggattgctatcaagattatgataatagagataaacgttatgaatatcagccccttgatc 491
||||| | || | ||| | ||| | ||||| ||| ||||| ||||||||||||| |
Sbjct: 200 gggatcacgataaggatcacgatggtggagatgaacacgatgaagatcagccccttgagc 141
Query: 492 agccggaacacaagctggaactctgcactgaatttcctcctgccaactgatacagtcttc 551
||||||||||| ||||||||||| || |||||||||| || ||||| || |||| ||||
Sbjct: 140 agccggaacacgagctggaactccgcgctgaatttccgccgaccaaccgacacagccttc 81
Query: 552 atcacgagcaaaatgacaaagattatgacccacgagatgcnntaaaccagaacgctcttc 611
||||| ||||| |||| ||||| | ||||| || | || |||||||| ||||||||
Sbjct: 80 atcaccagcaatatgaagaagatgacaacccatgacaagcaataaaccaggacgctcttg 21
Query: 612 gtgtg 616
|||||
Sbjct: 20 gtgtg 16
Score = 91.7 bits (46), Expect = 3e-017
Identities = 100/118 (84%)
Strand = Plus / Minus
Query: 168 atctgcagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaaca 227
||||||||||| | |||||||| |||||||| ||||||| | ||||||||| || ||
Sbjct: 464 atctgcagaccacggctgaaggcttggttgaagagcatccgagtctggaactcagacacg 405
Query: 228 aacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgatct 285
||||||||||| || ||||| |||||||||||||| | ||||| |||||||||||||
Sbjct: 404 aacgggaaccacgccaggaacgcgatcggggtgaagagcagcagccccatgatgatct 347
>gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K10 5', mRNA sequence
Length = 440
Score = 103 bits (52), Expect = 9e-021
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||| | || ||||| |||||||| ||||| |||||||| || |||||||
Sbjct: 153 actccttgttccgggtggctcggtccttcttgtggccgccgaggatacgggagatctgca 94
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
| ||||| ||||| ||||||||||| |||||||| | ||||||||| || || || ||||
Sbjct: 93 ggcctctgctgaaagcctggttgaagagcatcctggtctggaactcggacacgaagggga 34
Query: 235 accaagcgagga 246
|||| |||||||
Sbjct: 33 accacgcgagga 22
>gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P09
3-PRIME, mRNA sequence
Length = 541
Score = 103 bits (52), Expect = 9e-021
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||| | || ||||| |||||||| ||||| |||||||| || |||||||
Sbjct: 160 actccttgttccgggtggctcggtccttcttgtggccgccgaggatacgggagatctgca 101
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
| ||||| ||||| ||||||||||| |||||||| | ||||||||| || || || ||||
Sbjct: 100 ggcctctgctgaaagcctggttgaagagcatcctggtctggaactcggacacgaagggga 41
Query: 235 accaagcgagga 246
|||| |||||||
Sbjct: 40 accacgcgagga 29
>gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 5', mRNA sequence
Length = 483
Score = 101 bits (51), Expect = 4e-020
Identities = 135/163 (82%)
Strand = Plus / Minus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 182 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 123
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 122 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 63
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatga 279
|| || ||||| |||||||||||||| | ||||| |||||||
Sbjct: 62 cacgccaggaacgcgatcggggtgaagagcagcagccccatga 20
>gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 5', mRNA sequence
Length = 471
Score = 101 bits (51), Expect = 4e-020
Identities = 135/163 (82%)
Strand = Plus / Minus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 170 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 111
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 110 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 51
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatga 279
|| || ||||| |||||||||||||| | ||||| |||||||
Sbjct: 50 cacgccaggaacgcgatcggggtgaagagcagcagccccatga 8
>gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 5', mRNA sequence
Length = 474
Score = 101 bits (51), Expect = 4e-020
Identities = 135/163 (82%)
Strand = Plus / Minus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 173 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 114
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| || || |||||||||
Sbjct: 113 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagacacgaacgggaac 54
Query: 237 caagcgaggaatgcgatcggggtgaacaacagcaagcccatga 279
|| || ||||| |||||||||||||| | ||||| |||||||
Sbjct: 53 cacgccaggaacgcgatcggggtgaagagcagcagccccatga 11
>gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 5', mRNA sequence
Length = 447
Score = 89.7 bits (45), Expect = 1e-016
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 155 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 96
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | ||||||||| | || |||||||||
Sbjct: 95 ccacggctgaaggcctggttgaagagcatccgagtctggaactcagncacgaacgggaac 36
Query: 237 caagcgaggaatgcgatcggggtgaa 262
|| || ||||| |||||||||||||
Sbjct: 35 cacgccaggaanncgatcggggtgaa 10
>gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 3', mRNA sequence
Length = 405
Score = 71.9 bits (36), Expect = 3e-011
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 117 tccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgcaga 176
|||||| |||| || |||||||| |||||||| || || ||||| | || |||||||||
Sbjct: 268 tccttgctccgcgccgcccggtccttcttgtgcccacccaggatcctcgagatctgcaga 327
Query: 177 cctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacgggaac 236
|| | ||||||||||||||||| ||||||| | |||||||| || || |||||||||
Sbjct: 328 ccacggctgaaggcctggttgaagagcatccgagtctggaactnagacacgaacgggaac 387
Query: 237 caagcgaggaatgcgatc 254
|| | ||||| ||||||
Sbjct: 388 cacnccaggaacgcgatc 405
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 168 atctgcagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaaca 227
|||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||
Sbjct: 173 atctgcagccctctactgaacgcctggttgaacagcatccgcgtctggaactcggagacg 114
Query: 228 aacgggaacca 238
|| ||||||||
Sbjct: 113 aaggggaacca 103
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 168 atctgcagacctctactgaaggcctggttgaacagcatccttggctggaactccgaaaca 227
|||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||
Sbjct: 280 atctgcagccctctactgaacgcctggttgaacagcatccgcgtctggaactcggagacg 221
Query: 228 aacgggaacca 238
|| ||||||||
Sbjct: 220 aaggggaacca 210
>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
5-PRIME, mRNA sequence
Length = 384
Score = 69.9 bits (35), Expect = 1e-010
Identities = 114/142 (80%)
Strand = Plus / Minus
Query: 619 tggtgatgttcaaatgataaacaagaccatactggtaaataaagaagcgcaacgaaagca 678
|||| ||||| | ||| ||||| || ||||||||||| || |||||||||| | |||||
Sbjct: 376 tggttatgttgagatggtaaacgagcccatactggtagatgaagaagcgcacggcaagca 317
Query: 679 ctatttcaagaacagtgccacgctttccagaatgcctaagannctcctgctctttttccc 738
|||| |||||||| ||||||||||| || || | | || ||| |||||||| ||||
Sbjct: 316 ctatctcaagaacggtgccacgcttcccggagtatttcaggggctcgtgctctttctccc 257
Query: 739 accatgactnncancttttctc 760
||||||||| || ||||||||
Sbjct: 256 accatgactcccaacttttctc 235
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 645 ccatactggtaaataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctt 703
||||| ||||| ||||||||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 529 ccatattggtatataaagaagcgcacggcaagcactatctcaagaacggtgccacgctt 471
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 60.0 bits (30), Expect = 1e-007
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 636 taaacaagaccatactggtaaataaagaagcgcaacgaaagcactatttcaagaacagtg 695
||||| || ||||||||||| || ||||||||| | ||||||||| |||||||| |||
Sbjct: 459 taaacgagcccatactggtagatgaagaagcgcccggcaagcactatctcaagaacggtg 400
Query: 696 ccacgctttccagaatgcctaagannctcctgctctttttcccaccatgactnncanctt 755
|||||||| || || | | || ||| |||||||| ||||||||||||| || |||
Sbjct: 399 ccacgcttcccggagtatttcaggggctcgtgctctttctcccaccatgactcccaactt 340
Query: 756 ttctc 760
|||||
Sbjct: 339 ttctc 335
>gb|BQ757764.1|BQ757764 EBem10_SQ005_C17_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ005_C17 5', mRNA sequence
Length = 79
Score = 56.0 bits (28), Expect = 2e-006
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 594 taaaccagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactgg 653
|||||||| |||||||| ||||| |||| ||||| | ||| ||||| || |||||||||
Sbjct: 77 taaaccaggacgctcttggtgtgtttggttatgttgagatggtaaacgagcccatactgg 18
Query: 654 taaataaagaagcgca 669
|| || ||||||||||
Sbjct: 17 tagatgaagaagcgca 2
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 337 gagaaatctccaaacctctgctgaaagcctggttgaacag 376
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 250 gagaaatctccaaacctctgctgaaagcctggttgaacag 289
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 410 gagaaatctccaaacctctgctgaaagcctggttgaacag 371
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 632 gagaaatctccaaacctctgctgaaagcctggttgaacag 593
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 186 gagaaatctccaaacctctgctgaaagcctggttgaacag 147
>gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14l04 3', mRNA sequence
Length = 478
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 313 gagaaatcttcaaacctctgctgaaagcctggttgaacag 352
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 341 gagaaatctccaaacctctgctgaaagcctggttgaacag 380
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
||||||||| || |||||| ||||| ||||||||||||||
Sbjct: 5802 gagaaatctccaaacctctgctgaaagcctggttgaacag 5763
>gb|BU999201.1|BU999201 HI13K20r HI Hordeum vulgare subsp. vulgare cDNA clone HI13K20
5-PRIME, mRNA sequence
Length = 152
Score = 46.1 bits (23), Expect = 0.002
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 639 acaagaccatactggtaaataaagaagcgcaacgaaagcactatttcaagaacagtgcca 698
||||| || |||||||| || ||||| ||||| | |||| |||||||| | ||||||
Sbjct: 148 acaagcccgtactggtatatgaagaaacgcaatgctagcagtatttcaactatggtgcca 89
Query: 699 cgctttccagaatgcctaagannctcctgctctttttcccacca 742
||||| ||||| |||| |||| |||||||||| ||||||||
Sbjct: 88 cgcttcccagagtgccnaagaggtccctgctctttgtcccacca 45
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.007
Identities = 68/85 (80%)
Strand = Plus / Minus
Query: 676 gcactatttcaagaacagtgccacgctttccagaatgcctaagannctcctgctcttttt 735
||||||| |||||||| ||||||||||| || || | | || ||| |||||||| |
Sbjct: 604 gcactatctcaagaacggtgccacgcttcccggagtatttcaggggctcgtgctctttct 545
Query: 736 cccaccatgactnncancttttctc 760
|||||||||||| || ||||||||
Sbjct: 544 cccaccatgactcccaacttttctc 520
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.007
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 726 tgctctttttcccaccatgactnncancttttctc 760
|||||||| ||||||||||||| || ||||||||
Sbjct: 565 tgctctttctcccaccatgactcccaacttttctc 531
>gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_J05 5', mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacag 202
||||||||||||||||||||
Sbjct: 35 ctgaaggcctggttgaacag 16
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 ctgaaggcctggttgaacag 202
||||||||||||||||||||
Sbjct: 310 ctgaaggcctggttgaacag 291
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 ctgaaggcctggttgaacag 202
||||||||||||||||||||
Sbjct: 335 ctgaaggcctggttgaacag 354
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,037
Number of Sequences: 312970
Number of extensions: 52037
Number of successful extensions: 14293
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14181
Number of HSP's gapped (non-prelim): 105
length of query: 830
length of database: 175,134,539
effective HSP length: 19
effective length of query: 811
effective length of database: 169,188,109
effective search space: 137211556399
effective search space used: 137211556399
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)