BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 250 8e-065
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 236 1e-060
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 236 1e-060
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 236 1e-060
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 212 2e-053
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 212 2e-053
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 212 2e-053
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 212 2e-053
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 212 2e-053
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 212 2e-053
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 212 2e-053
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 206 1e-051
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 206 1e-051
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 200 7e-050
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 200 7e-050
gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA li... 176 1e-042
gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. v... 176 1e-042
gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. v... 176 1e-042
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 163 1e-038
gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. v... 161 6e-038
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 149 2e-034
gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. v... 105 3e-021
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 103 1e-020
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 98 7e-019
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 88 7e-016
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 88 7e-016
gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, n... 88 7e-016
gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. v... 88 7e-016
gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. v... 88 7e-016
gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. v... 86 3e-015
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 82 4e-014
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 80 2e-013
gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA li... 78 7e-013
gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 ... 74 1e-011
gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa... 72 4e-011
gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no... 72 4e-011
gb|BQ464032.1|BQ464032 HF01C16T HF Hordeum vulgare subsp. v... 66 3e-009
gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed D... 64 1e-008
gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke devel... 60 2e-007
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 60 2e-007
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 60 2e-007
gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. v... 58 6e-007
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 46 0.002
gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA,... 44 0.009
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 250 bits (126), Expect = 8e-065
Identities = 393/482 (81%)
Strand = Plus / Minus
Query: 552 tatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatg 611
|||||| ||||||||||| || || || |||||||| || ||||||||||||||||||||
Sbjct: 519 tatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccagcatg 460
Query: 612 tgaacacatgtagaaatcgaagttccttggatgacagactttgttgtcaacaacagtgcc 671
| |||||||| || || | ||||||||||| ||||| || ||||||||||||||
Sbjct: 459 agcgcacatgtaaaagtcataattccttggatggcagacagcattatcaacaacagtgcc 400
Query: 672 agctggaacattatctggctttccaggaatgaaaaatttagtgtggtgattcttctgggc 731
|| || ||||| || || |||||| |||||||| || ||||||||||||||||| ||
Sbjct: 399 aggagggacattgtcaggagatccaggcatgaaaaactttgtgtggtgattcttctgagc 340
Query: 732 aatgatcaatgtgaacttgggattccatttctcatcaagaaatttgcaagcctcaatgat 791
|| |||| |||||||||||| ||||| || ||||| | || ||||| |||||||| ||
Sbjct: 339 aacaatcagtgtgaacttggggttccaattttcatccaagaacttgcaggcctcaataat 280
Query: 792 ttgttgcaactcaatgttcagcacctggttaaactgactttcactaacaccgtccctgaa 851
||| | || || |||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 279 ttgatctaattcgatgttcagcacctgattaaactggctctcgctaacaccatccctgaa 220
Query: 852 gatgatgacttggtcaggctttctcttccctgaactggtgtagaagtcaatcagacactc 911
|||||||| || || || |||||||| || |||||||||||||||||||| ||||||||
Sbjct: 219 gatgatgatctgatctggttttctctttccagaactggtgtagaagtcaatgagacactc 160
Query: 912 ccgaatcagaccatcgtcatcagtttcccgtggcttaaacaacgagtcaatcatttccat 971
||||| || ||||| || |||||| | ||||||| ||||| || || |||||||| |
Sbjct: 159 ccgaacaaggccatcatcttcagttccttgtggcttgaacaatgaatctatcatttctag 100
Query: 972 ttttggtgattgggtgcggacagatgctctgtatttcgagataagaggccattcacgaga 1031
|||||||| || | ||| || || || || |||||||||| ||| |||||||| |||||
Sbjct: 99 ctttggtgactgcgagcgcactgaagccctatatttcgagacaaggggccattctcgaga 40
Query: 1032 ac 1033
||
Sbjct: 39 ac 38
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 236 bits (119), Expect = 1e-060
Identities = 364/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 457 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 398
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 397 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 338
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 337 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 278
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 277 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 218
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 217 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 158
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 157 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 98
Query: 649 actttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaat 708
|| || |||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 97 acagcattatcaacaacagtgccaggagggacattgtcaggagatccaggcatgaaaaac 38
Query: 709 ttagtgtggtgattcttctgggcaa 733
|| ||||||||||||||||| ||||
Sbjct: 37 tttgtgtggtgattcttctgagcaa 13
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 236 bits (119), Expect = 1e-060
Identities = 364/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 494 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 435
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 434 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 375
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 374 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 315
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 314 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 255
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 254 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 195
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 194 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 135
Query: 649 actttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaat 708
|| || |||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 134 acagcattatcaacaacagtgccaggagggacattgtcaggagatccaggcatgaaaaac 75
Query: 709 ttagtgtggtgattcttctgggcaa 733
|| ||||||||||||||||| ||||
Sbjct: 74 tttgtgtggtgattcttctgagcaa 50
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 236 bits (119), Expect = 1e-060
Identities = 364/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 186 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 245
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 246 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 305
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 306 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 365
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 366 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 425
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 426 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 485
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 486 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 545
Query: 649 actttgttgtcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaat 708
|| || |||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 546 acagcattatcaacaacagtgccaggagggacattgtcaggagatccaggcatgaaaaac 605
Query: 709 ttagtgtggtgattcttctgggcaa 733
|| ||||||||||||||||| ||||
Sbjct: 606 tttgtgtggtgattcttctgagcaa 630
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 267 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 326
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 327 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 386
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 387 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 446
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 447 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 506
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 507 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 566
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 567 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 626
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 627 acagcattatcaacaacagtgccag 651
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 285 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 344
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 345 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 404
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 405 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 464
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 465 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 524
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 525 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 584
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 585 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 644
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 645 acagcattatcaacaacagtgccag 669
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 243 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 302
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 303 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 362
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 363 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 422
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 423 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 482
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 483 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 542
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 543 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 602
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 603 acagcattatcaacaacagtgccag 627
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 432 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 373
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 372 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 313
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 312 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 253
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 252 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 193
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 192 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 133
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 132 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 73
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 72 acagcattatcaacaacagtgccag 48
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 229 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 288
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 289 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 348
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 349 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 408
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 409 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 468
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 469 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 528
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 529 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 588
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 589 acagcattatcaacaacagtgccag 613
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 277 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 336
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 337 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 396
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 397 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 456
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 457 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 516
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 517 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 576
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 577 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 636
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 637 acagcattatcaacaacagtgccag 661
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 212 bits (107), Expect = 2e-053
Identities = 316/385 (82%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 229 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 288
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 289 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 348
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 349 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 408
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 409 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 468
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 469 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 528
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 529 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 588
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 589 acagcattatcaacaacagtgccag 613
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 206 bits (104), Expect = 1e-051
Identities = 308/376 (81%)
Strand = Plus / Minus
Query: 658 tcaacaacagtgccagctggaacattatctggctttccaggaatgaaaaatttagtgtgg 717
|||||||||||||||| || ||||| || || |||||| |||||||| || ||||||
Sbjct: 578 tcaacaacagtgccaggagggacattgtcaggagatccaggcatgaaaaactttgtgtgg 519
Query: 718 tgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaagaaatttg 777
||||||||||| |||| |||| |||||||||||| ||||| || ||||| | || |||
Sbjct: 518 tgattcttctgagcaacaatcagtgtgaacttggggttccaattttcatccaagaacttg 459
Query: 778 caagcctcaatgatttgttgcaactcaatgttcagcacctggttaaactgactttcacta 837
|| |||||||| ||||| | || || |||||||||||||| |||||||| || || |||
Sbjct: 458 caggcctcaataatttgatctaattcgatgttcagcacctgattaaactggctctcgcta 399
Query: 838 acaccgtccctgaagatgatgacttggtcaggctttctcttccctgaactggtgtagaag 897
||||| |||||||||||||||| || || || |||||||| || |||||||||||||||
Sbjct: 398 acaccatccctgaagatgatgatctgatctggttttctctttccagaactggtgtagaag 339
Query: 898 tcaatcagacactcccgaatcagaccatcgtcatcagtttcccgtggcttaaacaacgag 957
||||| ||||||||||||| || ||||| || |||||| | ||||||| ||||| ||
Sbjct: 338 tcaatgagacactcccgaacaaggccatcatcttcagttccttgtggcttgaacaatgaa 279
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
|| |||||||| | |||||||| || | ||| || || || || |||||||||| |||
Sbjct: 278 tctatcatttctagctttggtgactgcgagcgcactgaagccctatatttcgagacaagg 219
Query: 1018 ggccattcacgagaac 1033
|||||||| |||||||
Sbjct: 218 ggccattctcgagaac 203
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 206 bits (104), Expect = 1e-051
Identities = 315/385 (81%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 276 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 335
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 336 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 395
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 396 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 455
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 456 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 515
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||| ||
Sbjct: 516 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggnctt 575
Query: 589 gtagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttccttggatgacag 648
|| |||||||||||||||||||| | |||||||| || || | ||||||||||| |||
Sbjct: 576 gttgtcccaatcattccagcatgagcgcacatgtaaaagtcataattccttggatggcag 635
Query: 649 actttgttgtcaacaacagtgccag 673
|| || ||||||||||||||||
Sbjct: 636 acagcattatcaacaacagtgccag 660
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 200 bits (101), Expect = 7e-050
Identities = 268/323 (82%), Gaps = 3/323 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 452
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 453 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 512
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 513 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 572
Query: 589 gtagtcccaatcattccagcatg 611
|| ||||||||||||||||||||
Sbjct: 573 gttgtcccaatcattccagcatg 595
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 200 bits (101), Expect = 7e-050
Identities = 268/323 (82%), Gaps = 3/323 (0%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 232 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 291
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 292 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 351
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 352 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 411
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 412 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 471
Query: 529 tgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctg 588
||||||||||| | ||| |||||| ||||||||||| || || || ||||||||
Sbjct: 472 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 531
Query: 589 gtagtcccaatcattccagcatg 611
|| ||||||||||||||||||||
Sbjct: 532 gttgtcccaatcattccagcatg 554
>gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9a21 3', mRNA sequence
Length = 587
Score = 176 bits (89), Expect = 1e-042
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 292 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 351
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 352 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 411
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 412 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 471
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 472 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 531
Query: 529 tgcaggtcatc 539
|||||||||||
Sbjct: 532 tgcaggtcatc 542
>gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. vulgare cDNA clone HA10I02
3-PRIME, mRNA sequence
Length = 514
Score = 176 bits (89), Expect = 1e-042
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 232 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 291
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 292 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 351
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 352 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 411
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 412 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 471
Query: 529 tgcaggtcatc 539
|||||||||||
Sbjct: 472 tgcaggtcatc 482
>gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K21
3-PRIME, mRNA sequence
Length = 584
Score = 176 bits (89), Expect = 1e-042
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 293 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 352
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 353 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 412
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
|| ||||||||||||||| | ||||| || |||||||| || || |||||||| |||| |
Sbjct: 413 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 472
Query: 469 acaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcc 528
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 473 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 532
Query: 529 tgcaggtcatc 539
|||||||||||
Sbjct: 533 tgcaggtcatc 543
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 163 bits (82), Expect = 1e-038
Identities = 277/341 (81%), Gaps = 1/341 (0%)
Strand = Plus / Minus
Query: 693 tccaggaatgaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttggg 752
|||||| |||||||| | ||||||| ||||||||| |||| |||| ||||||||||||
Sbjct: 674 tccaggcatgaaaaactntgtgtggt-attcttctgagcaacaatcagtgtgaacttggg 616
Query: 753 attccatttctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcag 812
||||| || ||||| | | |||||| |||||||| ||||| | || || ||||||||
Sbjct: 615 gttccaattttcatccaagactttgcaggcctcaataatttgatctaattcgatgttcag 556
Query: 813 cacctggttaaactgactttcactaacaccgtccctgaagatgatgacttggtcaggctt 872
|||||| |||||||| || || |||||||| |||||||||||||| || || || ||
Sbjct: 555 cacctgattaaactggctctcgctaacaccatccctgaagatgatattctgatctggttt 496
Query: 873 tctcttccctgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatc 932
|||||| || |||||||||||||||||||| ||||||||||||| || ||||| || ||
Sbjct: 495 tctctttccagaactggtgtagaagtcaatgagacactcccgaacaaggccatcatcttc 436
Query: 933 agtttcccgtggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggac 992
|||| | ||||||| ||||| || || |||||||| | |||||||| || | ||| ||
Sbjct: 435 agttccttgtggcttgaacaatgaatctatcatttctagctttggtgactgcgagcgcac 376
Query: 993 agatgctctgtatttcgagataagaggccattcacgagaac 1033
|| || || |||||||||| ||| |||||||| |||||||
Sbjct: 375 tgaagccctatatttcgagacaaggggccattctcgagaac 335
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 473 ctgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcctgca 532
||||||||||||||| |||||| |||||||| |||||||| || ||| | || |||||||
Sbjct: 891 ctgatatggctgttg-gctcctntggtacacataagagagggaatgcccaagatcctgca 833
Query: 533 ggtcatc 539
||||||
Sbjct: 832 agtcatc 826
>gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B24
5-PRIME, mRNA sequence
Length = 455
Score = 161 bits (81), Expect = 6e-038
Identities = 240/293 (81%)
Strand = Plus / Minus
Query: 741 tgtgaacttgggattccatttctcatcaagaaatttgcaagcctcaatgatttgttgcaa 800
|||||||||||| ||||| || ||||| | || ||||| |||||||| ||||| | ||
Sbjct: 452 tgtgaacttggggttccaattttcatccaagaacttgcaggcctcaataatttgatctaa 393
Query: 801 ctcaatgttcagcacctggttaaactgactttcactaacaccgtccctgaagatgatgac 860
|| |||||||||||||| |||||||| || || |||||||| ||||||||||||||||
Sbjct: 392 ttcgatgttcagcacctgattaaactggctctcgctaacaccatccctgaagatgatgat 333
Query: 861 ttggtcaggctttctcttccctgaactggtgtagaagtcaatcagacactcccgaatcag 920
|| || || |||||||| || |||||||||||||||||||| ||||||||||||| ||
Sbjct: 332 ctgatctggttttctctttccagaactggtgtagaagtcaatgagacactcccgaacaag 273
Query: 921 accatcgtcatcagtttcccgtggcttaaacaacgagtcaatcatttccatttttggtga 980
||||| || |||||| | ||||||| ||||| || || |||||||| | ||||||||
Sbjct: 272 gccatcatcttcagttccttgtggcttgaacaatgaatctatcatttctagctttggtga 213
Query: 981 ttgggtgcggacagatgctctgtatttcgagataagaggccattcacgagaac 1033
|| | ||| || || || || |||||||||| ||| |||||||| |||||||
Sbjct: 212 ctgcgagcgcactgaagccctatatttcgagacaaggggccattctcgagaac 160
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 149 bits (75), Expect = 2e-034
Identities = 279/347 (80%)
Strand = Plus / Minus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||| | ||||| || |||||||| |||| || | |||||||||||| | ||| ||
Sbjct: 552 gaaaaatctggtgtgatggttcttctgagcaacaatgactgtgaacttgggctcccactt 493
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggtt 821
|| ||||| | ||||| ||||| ||||| || | | ||| ||||| | ||||||| |
Sbjct: 492 gtcgtcaaggcacttgcatgcctcgatgatctgctcaagctcgatgtttatcacctgggt 433
Query: 822 aaactgactttcactaacaccgtccctgaagatgatgacttggtcaggctttctcttccc 881
|||||| ||||| || || || |||||||||||||| || ||||| ||||| | ||||||
Sbjct: 432 aaactggctttcgctgactccatccctgaagatgataacctggtctggcttccgcttccc 373
Query: 882 tgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccg 941
||||| |||||||||||||| || | |||||||| || ||||| || |||||| ||||
Sbjct: 372 agaactagtgtagaagtcaataagtgattcccgaatgaggccatcatcttcagttccccg 313
Query: 942 tggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctct 1001
||| |||||||| ||| | ||||| ||| ||| ||||| || ||| | || | ||||||
Sbjct: 312 tggtttaaacaatgaggccatcatctcctgtttgggtgactgagtgtgcactgttgctct 253
Query: 1002 gtatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
|||||| ||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 252 gtatttagagatgagaggccactcacgagaactcaccaccgcagcaa 206
Score = 44.1 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 595 ccaatcattccagcatgtgaacacatgtagaaatcgaagttc 636
|||||||| |||||||| | |||||||||||| || ||||||
Sbjct: 659 ccaatcatcccagcatgcgcacacatgtagaagtcaaagttc 618
>gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
5-PRIME, mRNA sequence
Length = 556
Score = 105 bits (53), Expect = 3e-021
Identities = 143/173 (82%)
Strand = Plus / Minus
Query: 876 cttccctgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagt 935
|||||| ||||| |||||||||||||| || | |||||||| || ||||| || |||||
Sbjct: 553 cttcccagaactagtgtagaagtcaataagtgattcccgaatgaggccatcatcttcagt 494
Query: 936 ttcccgtggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacaga 995
| ||||||| |||||||| ||| | ||||| ||| ||| ||||| || ||| | || |
Sbjct: 493 tccccgtggtttaaacaatgaggccatcatctcctgtttgggtgactgagtgtgcactgt 434
Query: 996 tgctctgtatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
|||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 433 tgctctgtatttagagatgagaggccactcacgagaactcaccaccgcagcaa 381
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 103 bits (52), Expect = 1e-020
Identities = 247/312 (79%)
Strand = Plus / Minus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||| | ||||| || |||||||| |||| || | |||||||||||| | ||| ||
Sbjct: 316 gaaaaatctggtgtgatggttcttctgagcaacaatgactgtgaacttgggctcccactt 257
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggtt 821
|| ||||| | ||||| ||||| ||||| || | | ||||||||| | ||||||| |
Sbjct: 256 gtcgtcaaggcacttgcatgcctcgatgatctgctcaagctcaatgtttatcacctgggt 197
Query: 822 aaactgactttcactaacaccgtccctgaagatgatgacttggtcaggctttctcttccc 881
|||||| |||| || || || |||||||||||||| || ||||| ||||| | ||||||
Sbjct: 196 aaactggctttagctgactccatccctgaagatgataacgtggtctggcttccgcttccc 137
Query: 882 tgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccg 941
||||| |||||||||||||| || | || ||||| || ||||| || |||||| ||||
Sbjct: 136 agaactagtgtagaagtcaataagtgattcgcgaatgaggccatcatcttcagttccccg 77
Query: 942 tggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctct 1001
||| |||||||| ||| | ||||| ||| ||| ||||| || ||| | || | ||||||
Sbjct: 76 tggtttaaacaatgaggccatcatctcctgtttgggtgactgagtgtgcactgttgctct 17
Query: 1002 gtatttcgagat 1013
|||||| |||||
Sbjct: 16 gtatttagagat 5
Score = 67.9 bits (34), Expect = 7e-010
Identities = 121/150 (80%)
Strand = Plus / Minus
Query: 487 gtgctcctttggtacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattg 546
|||||||| |||||||| ||||| ||||||||||| | |||||| || || || | ||
Sbjct: 531 gtgctcctctggtacacataagaaagcgagtgcacaaactcctggagctcgtccgcgctg 472
Query: 547 aagcctatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattcca 606
||||| ||||| |||||||| | || || || |||||||| | || |||||||| |||
Sbjct: 471 aagccaatctcatcatgcagaacatggtaatgcgttggcctcgacgtgccaatcatccca 412
Query: 607 gcatgtgaacacatgtagaaatcgaagttc 636
||||| | |||||||||||| || ||||||
Sbjct: 411 gcatgcgcacacatgtagaagtcaaagttc 382
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 295 cagcagaagaacatggagctcctcactttctcatgcag 332
||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 726 cagcagaagaacatgaagctcatcactttttcatgcag 689
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 97.6 bits (49), Expect = 7e-019
Identities = 275/347 (79%), Gaps = 5/347 (1%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggacagg 353
||||||||||||||||||||||||||||||||||||||| || ||||||||| | || |
Sbjct: 508 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctccggcaccga 449
Query: 354 gacgctgcccgccgaggtatg---ccccccatggctagatgaagtctccgacatctcgtc 410
| |||||||| |||| || || ||| || ||||| || ||||| |||||||| || ||
Sbjct: 448 ggcgctgcccaccgacgtgtggccccctccctggctcgacgaagtgtccgacatgtcctc 389
Query: 411 gaactttatgaa-ctgcccaacctgggcggctgcaaggtgggcgtagcagatgggagcaa 469
||||| ||||| ||||| ||||| || || || || || ||||| || ||||||
Sbjct: 388 aaacttcatgaaggtgccc-acctgcgccgccgccagatgcgcgtacgctattggagcag 330
Query: 470 caactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcaccagctcct 529
| ||||| || || || |||||||| |||||||| ||||| |||||||| || | |||||
Sbjct: 329 ctactgaaatcgccgtcgtgctcctctggtacacataagaaagcgagtggacaaactcct 270
Query: 530 gcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagttggcctgg 589
| || || || | ||||||| ||||| |||||||| | || || || |||||||| |
Sbjct: 269 ggagctcgtccgcgctgaagccaatctcatcatgcagaacatggtaatgcgttggcctcg 210
Query: 590 tagtcccaatcattccagcatgtgaacacatgtagaaatcgaagttc 636
|| |||||||| |||||||| | |||||||||||| || ||||||
Sbjct: 209 acgtgccaatcatcccagcatgcgcacacatgtagaagtcaaagttc 163
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 365 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctcc 416
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 396 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctcc 447
>gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_N14 5', mRNA sequence
Length = 453
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 55 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctcc 4
>gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. vulgare cDNA clone HS17L21
3-PRIME, mRNA sequence
Length = 574
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 381 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctcc 432
>gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
3-PRIME, mRNA sequence
Length = 521
Score = 87.7 bits (44), Expect = 7e-016
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 381 tcagcagaagaacatggagctcctcactttctcatgcagccgaggcagctcc 432
>gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB19G05
5-PRIME, mRNA sequence
Length = 644
Score = 85.7 bits (43), Expect = 3e-015
Identities = 124/151 (82%)
Strand = Plus / Minus
Query: 883 gaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagtttcccgt 942
|||||||||||||||||||| ||||||||||||| || ||||| || |||||| | ||
Sbjct: 641 gaactggtgtagaagtcaatgagacactcccgaacaaggccatcatcttcagttccttgt 582
Query: 943 ggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacagatgctctg 1002
||||| ||||| || || |||||||| | |||||||| || | ||| || || || ||
Sbjct: 581 ggcttgaacaatgaatctatcatttctagctttggtgactgcgagcgcactgaagcccta 522
Query: 1003 tatttcgagataagaggccattcacgagaac 1033
|||||||||| ||| |||||||| |||||||
Sbjct: 521 tatttcgagacaaggggccattctcgagaac 491
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 81.8 bits (41), Expect = 4e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||| | ||||| || |||||||| |||| || | |||||||||||| | ||| ||
Sbjct: 238 gaaaaatctggtgtgatggttcttctgagcaacaatgactgtgaacttgggctcccactt 179
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggtt 821
|| ||||| | ||||| ||||| ||||| || | | ||| ||||| | ||||||| |
Sbjct: 178 gtcgtcaaggcacttgcatgcctcgatgatctgctcaagctcgatgtttatcacctgggt 119
Query: 822 aaactgactttcactaacaccgtccctgaagatgatgacttggtcaggctttctcttccc 881
|||||| ||||| || || || |||||||||||||| || ||||| ||||| | ||||||
Sbjct: 118 aaactggctttcgctgactccatccctgaagatgataacctggtctggcttccgcttccc 59
Query: 882 tgaactggtgtagaagtcaat 902
||||| ||||||||||||||
Sbjct: 58 agaactagtgtagaagtcaat 38
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 487 gtgctcctttggtacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattg 546
|||||||| |||||||| ||||| |||||||| || | |||||| || || || | ||
Sbjct: 453 gtgctcctctggtacacataagaaagcgagtggacaaactcctggagctcgtccgcgctg 394
Query: 547 aagcctatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattcca 606
||||| ||||| |||||||| | || || || |||||||| | || |||||||| |||
Sbjct: 393 aagccaatctcatcatgcagaacatggtaatgcgttggcctcgacgtgccaatcatccca 334
Query: 607 gcatgtgaacacatgtagaaatcgaagttc 636
||||| | |||||||||||| || ||||||
Sbjct: 333 gcatgcgcacacatgtagaagtcaaagttc 304
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 79.8 bits (40), Expect = 2e-013
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcc 345
|||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 564 tcagcagaagaacatggagctcttcactttctcatgcagccgaggcagctcc 513
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 487 gtgctcctttggtacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattg 546
|||||||| |||||||| ||||| |||||||| || | |||||| || || || | ||
Sbjct: 368 gtgctcctctggtacacataagaaagcgagtggacaaactcctggagctcgtccgcgctg 309
Query: 547 aagcctatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattcca 606
||||| ||||| |||||||| | || || || |||||||| | || |||||||| |||
Sbjct: 308 aagccaatctcatcatgcagaacatggtaatgcgttggcctcgacgtgccaatcatccca 249
Query: 607 gcatgtgaacacatgtagaaatcgaagttc 636
||||| | |||||||||||| || ||||||
Sbjct: 248 gcatgcgcacacatgtagaagtcaaagttc 219
Score = 42.1 bits (21), Expect = 0.037
Identities = 120/153 (78%)
Strand = Plus / Minus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||| | ||||| || |||||||| |||| || | |||||||||||| | ||| ||
Sbjct: 153 gaaaaatctggtgtgatggttcttctgagcaacaatgactgtgaacttgggctcccactt 94
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttgttgcaactcaatgttcagcacctggtt 821
|| ||||| | ||||| ||||| ||||| || | | ||| ||||| | ||||||| |
Sbjct: 93 gtcgtcaaggcacttgcatgcctcgatgatctgctcaagctcgatgtttatcacctgggt 34
Query: 822 aaactgactttcactaacaccgtccctgaagat 854
|||||| ||||| || || || |||||||||||
Sbjct: 33 aaactggctttcgctgactccatccctgaagat 1
>gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17o03 3', mRNA sequence
Length = 524
Score = 77.8 bits (39), Expect = 7e-013
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 294 tcagcagaagaacatggagctcctcactttctcatgcag 332
|||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcagcagaagaacatggagctcctcactttctcatgcag 522
>gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0086A12f, mRNA sequence
Length = 841
Score = 73.8 bits (37), Expect = 1e-011
Identities = 140/173 (80%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 876 cttccctgaactggtgtagaagtcaatcagacactcccgaatcagaccatcgtcatcagt 935
|||||| ||| | ||| |||||||||| || | |||||||| || ||||| || |||||
Sbjct: 544 cttcccagaagtagtggagaagtcaataagtgattcccgaatgaggccatcatcttcagt 485
Query: 936 ttcccgtggcttaaacaacgagtcaatcatttccatttttggtgattgggtgcggacaga 995
| |||| || |||||||| ||| | ||||| || ||| ||||| || ||| | || ||
Sbjct: 484 tccccgggg-ttaaacaatgaggccatcatctcgtgtttgggtgactgagtgtgcactga 426
Query: 996 tgctctgtatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
|||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 425 tgctctgtatttagagatgagaggccactcacgagaactcaccaccgcagcaa 373
>gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019K06f, mRNA sequence
Length = 816
Score = 71.9 bits (36), Expect = 4e-011
Identities = 128/158 (81%), Gaps = 3/158 (1%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 164 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 105
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 104 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 45
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaag 446
|| ||||||||||||||| | ||||| || ||||||||
Sbjct: 44 tcaaactttatgaactgcgccacctgagcagctgcaag 7
>gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_D09 5', mRNA sequence
Length = 391
Score = 71.9 bits (36), Expect = 4e-011
Identities = 128/158 (81%), Gaps = 3/158 (1%)
Strand = Plus / Minus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 164 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 105
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | ||||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 104 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 45
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaag 446
|| ||||||||||||||| | ||||| || ||||||||
Sbjct: 44 tcaaactttatgaactgcgccacctgagcagctgcaag 7
>gb|BQ464032.1|BQ464032 HF01C16T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
5-PRIME, mRNA sequence
Length = 663
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 996 tgctctgtatttcgagataagaggccattcacgagaactaaccacagcagcaa 1048
|||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 610 tgctctgtatttagagatgagaggccactcacgagaactcaccaccgcagcaa 558
>gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ad02, mRNA sequence
Length = 537
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 394 gtctccgacatctcgtcgaactttatgaactgcccaacctgggcggctgcaaggtgggcg 453
||||| |||||||| || || |||||||||||||| ||||| || | ||||| || ||
Sbjct: 393 gtctcggacatctcatcaaattttatgaactgccccacctgagcagttgcaaaatgtgca 452
Query: 454 tagcagatgggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagc 513
|| || || ||| |||||||||||| ||||||| |||||||||| |||| ||| | |||
Sbjct: 453 taccaaattggaaaaacaactgatattgctgttgggctcctttggaacacataaaaaagc 512
Query: 514 gagtgcac 521
|| |||||
Sbjct: 513 gaatgcac 520
>gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J11u 3',
mRNA sequence
Length = 469
Score = 60.0 bits (30), Expect = 2e-007
Identities = 124/155 (80%), Gaps = 3/155 (1%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 315 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 374
Query: 352 gggacgctgcccgccgaggtatgcccccca---tggctagatgaagtctccgacatctcg 408
||| ||||| | | |||| || || ||| ||||| || || ||||| ||||||||
Sbjct: 375 gggccgctggcagtanaggtgtggccaccaccctggctcgacgacgtctcggacatctca 434
Query: 409 tcgaactttatgaactgcccaacctgggcggctgc 443
|| ||||||||||||||| | ||||| || |||||
Sbjct: 435 tcaaactttatgaactgcgccacctgagcagctgc 469
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 487 gtgctcctttggtacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattg 546
|||||||| |||||||| ||||| |||||||| || | |||||| || || || | ||
Sbjct: 359 gtgctcctctggtacacataagaaagcgagtggacaaactcctggagctcgtccgcgctg 300
Query: 547 aagcctatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattcca 606
||||| ||||| |||||||| | || || || |||||||| | || |||||||| |||
Sbjct: 299 aagccaatctcatcatgcagaacatggtaatgcgttggcctcgacgtgccaatcatccca 240
Query: 607 gcatgtgaacacatgtagaaatcgaagttc 636
||||| | |||||||||||| || ||||||
Sbjct: 239 gcatgcgcacacatgtagaagtcaaagttc 210
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 60.0 bits (30), Expect = 2e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 487 gtgctcctttggtacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattg 546
|||||||| |||||||| ||||| |||||||| || | |||||| || || || | ||
Sbjct: 344 gtgctcctctggtacacataagaaagcgagtggacaaactcctggagctcgtccgcgctg 285
Query: 547 aagcctatctcgtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattcca 606
||||| ||||| |||||||| | || || || |||||||| | || |||||||| |||
Sbjct: 284 aagccaatctcatcatgcagaacatggtaatgcgttggcctcgacgtgccaatcatccca 225
Query: 607 gcatgtgaacacatgtagaaatcgaagttc 636
||||| | |||||||||||| || ||||||
Sbjct: 224 gcatgcgcacacatgtagaagtcaaagttc 195
>gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. vulgare cDNA clone HI05M20
3-PRIME, mRNA sequence
Length = 407
Score = 58.0 bits (29), Expect = 6e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 292 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 351
|||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| ||
Sbjct: 299 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 358
Query: 352 gggacgctg 360
||| |||||
Sbjct: 359 gggccgctg 367
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 409 tcgaactttatgaactgcccaacctgggcggctgcaaggtgggcgtagcagatgggagca 468
||||| ||||||||||| | | ||| || ||||||||||| ||||| ||||| || ||
Sbjct: 413 tcgaattttatgaactggctcatctgcgctgctgcaaggtgcgcgtaacagataggtgcc 354
Query: 469 acaactgatatggctgttgtgctcctttggtacac 503
|| || ||||| || || |||||||| ||||||||
Sbjct: 353 accacagatattgcagtggtgctcctctggtacac 319
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 664 acagtgccagctggaacattatctgg 689
||||| ||||||||||||||||||||
Sbjct: 158 acagtcccagctggaacattatctgg 133
>gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_K14 5', mRNA sequence
Length = 388
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 294 tcagcagaagaacatggagctc 315
||||||||||||||||||||||
Sbjct: 22 tcagcagaagaacatggagctc 1
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,129
Number of Sequences: 312970
Number of extensions: 98129
Number of successful extensions: 26112
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25972
Number of HSP's gapped (non-prelim): 115
length of query: 1076
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1057
effective length of database: 169,188,109
effective search space: 178831831213
effective search space used: 178831831213
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)