BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 228 2e-058
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 228 2e-058
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 228 2e-058
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 208 2e-052
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 208 2e-052
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 208 2e-052
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 208 2e-052
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 202 1e-050
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 200 5e-050
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 200 5e-050
gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA li... 176 8e-043
gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. v... 176 8e-043
gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. v... 176 8e-043
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 98 6e-019
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 88 6e-016
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 88 6e-016
gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, n... 88 6e-016
gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. v... 88 6e-016
gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. v... 88 6e-016
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 80 1e-013
gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA li... 78 5e-013
gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa... 72 3e-011
gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no... 72 3e-011
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 68 5e-010
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 64 8e-009
gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed D... 64 8e-009
gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke devel... 60 1e-007
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 60 1e-007
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 60 1e-007
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 60 1e-007
gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. v... 58 5e-007
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 56 2e-006
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 46 0.002
gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA,... 44 0.008
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 44 0.008
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 228 bits (115), Expect = 2e-058
Identities = 363/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||| ||||||||||||||||| || |||||||| |||||| || || ||||| ||
Sbjct: 13 ttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatgtccctc 72
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| |||||||||||||| || ||||| ||||||||||| | || || ||||||||
Sbjct: 73 ctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcg 132
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| |||||||||||||||||||| || |||||||| || || || ||||||||||| ||||
Sbjct: 133 ctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgaga 192
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
|| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||
Sbjct: 193 tacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaa 252
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |
Sbjct: 253 ggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctc 312
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggg 496
|||| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| |
Sbjct: 313 aggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtg 372
Query: 497 ggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtga 556
| || ||||| | | ||||| ||| || ||||||||||| ||||| |||||||||||
Sbjct: 373 gccacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtcc 432
Query: 557 ggagctccatgttcttctgctgagc 581
| ||| ||||||||||||||||||
Sbjct: 433 gcagcagcatgttcttctgctgagc 457
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 228 bits (115), Expect = 2e-058
Identities = 363/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||| ||||||||||||||||| || |||||||| |||||| || || ||||| ||
Sbjct: 50 ttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatgtccctc 109
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| |||||||||||||| || ||||| ||||||||||| | || || ||||||||
Sbjct: 110 ctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcg 169
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| |||||||||||||||||||| || |||||||| || || || ||||||||||| ||||
Sbjct: 170 ctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgaga 229
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
|| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||
Sbjct: 230 tacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaa 289
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |
Sbjct: 290 ggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctc 349
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggg 496
|||| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| |
Sbjct: 350 aggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtg 409
Query: 497 ggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtga 556
| || ||||| | | ||||| ||| || ||||||||||| ||||| |||||||||||
Sbjct: 410 gccacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtcc 469
Query: 557 ggagctccatgttcttctgctgagc 581
| ||| ||||||||||||||||||
Sbjct: 470 gcagcagcatgttcttctgctgagc 494
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 228 bits (115), Expect = 2e-058
Identities = 363/445 (81%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||| ||||||||||||||||| || |||||||| |||||| || || ||||| ||
Sbjct: 630 ttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatgtccctc 571
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| |||||||||||||| || ||||| ||||||||||| | || || ||||||||
Sbjct: 570 ctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcg 511
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| |||||||||||||||||||| || |||||||| || || || ||||||||||| ||||
Sbjct: 510 ctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgaga 451
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
|| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||
Sbjct: 450 tacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaa 391
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |
Sbjct: 390 ggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctc 331
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggg 496
|||| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| |
Sbjct: 330 aggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtg 271
Query: 497 ggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtga 556
| || ||||| | | ||||| ||| || ||||||||||| ||||| |||||||||||
Sbjct: 270 gccacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtcc 211
Query: 557 ggagctccatgttcttctgctgagc 581
| ||| ||||||||||||||||||
Sbjct: 210 gcagcagcatgttcttctgctgagc 186
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 649 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 590
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 589 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 530
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 529 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 470
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 469 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 410
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 409 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 350
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 349 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 290
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 289 agcagcatgttcttctgctgagc 267
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 667 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 608
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 607 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 548
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 547 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 488
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 487 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 428
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 427 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 368
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 367 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 308
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 307 agcagcatgttcttctgctgagc 285
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 625 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 566
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 565 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 506
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 505 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 446
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 445 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 386
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 385 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 326
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 325 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 266
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 265 agcagcatgttcttctgctgagc 243
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 50 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 109
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 110 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 169
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 170 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 229
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 230 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 289
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 290 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 349
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 350 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 409
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 410 agcagcatgttcttctgctgagc 432
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 611 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 552
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 551 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 492
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 491 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 432
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 431 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 372
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 371 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 312
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 311 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 252
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 251 agcagcatgttcttctgctgagc 229
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 659 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 600
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 599 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 540
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 539 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 480
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 479 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 420
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 419 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 360
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 359 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 300
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 299 agcagcatgttcttctgctgagc 277
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 208 bits (105), Expect = 2e-052
Identities = 314/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 611 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 552
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 551 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 492
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 491 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 432
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 431 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 372
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 371 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 312
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 311 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 252
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 251 agcagcatgttcttctgctgagc 229
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 202 bits (102), Expect = 1e-050
Identities = 313/383 (81%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 202 ggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttca 261
|||||||||||||| || ||||| ||||||||||| | || || |||||||| |
Sbjct: 658 ggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcgct 599
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || || ||||| || || || ||||||||||| ||||||
Sbjct: 598 catgctggaatgattgggacaacaagnccaacacattaccatatcctgcatgatgagata 539
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 538 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 479
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 478 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 419
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 418 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 359
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 358 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 299
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 298 agcagcatgttcttctgctgagc 276
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 200 bits (101), Expect = 5e-050
Identities = 268/323 (82%), Gaps = 3/323 (0%)
Strand = Plus / Minus
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 595 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 536
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 535 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 476
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 475 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 416
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 415 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 356
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 355 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 296
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 295 agcagcatgttcttctgctgagc 273
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 200 bits (101), Expect = 5e-050
Identities = 268/323 (82%), Gaps = 3/323 (0%)
Strand = Plus / Minus
Query: 262 catgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagata 321
|||||||||||||||||||| || |||||||| || || || ||||||||||| ||||||
Sbjct: 554 catgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgagata 495
Query: 322 ggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaagg 381
||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 494 cactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaagg 435
Query: 382 agcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccag 441
||||||||||| |||||||||||| |||| |||||||| || || |||||||| || |||
Sbjct: 434 agcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctcag 375
Query: 442 gttgggcagttcataaagttcgacgagatgtcggagacttcatctagcca---tgggggg 498
|| | ||||||||||||||| || |||||||| ||||| || || ||||| ||| ||
Sbjct: 374 gtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggc 315
Query: 499 catacctcggcgggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgagg 558
|| ||||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct: 314 cacacctctactgccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgc 255
Query: 559 agctccatgttcttctgctgagc 581
||| ||||||||||||||||||
Sbjct: 254 agcagcatgttcttctgctgagc 232
>gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9a21 3', mRNA sequence
Length = 587
Score = 176 bits (89), Expect = 8e-043
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
|||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 542 gatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagca 483
Query: 394 atatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttc 453
|||||||||||| |||| |||||||| || || |||||||| || ||||| | |||||||
Sbjct: 482 atatcagttgtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttc 423
Query: 454 ataaagttcgacgagatgtcggagacttcatctagcca---tggggggcatacctcggcg 510
|||||||| || |||||||| ||||| || || ||||| ||| || || ||||| |
Sbjct: 422 ataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggccacacctctact 363
Query: 511 ggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttc 570
| ||||| ||| || ||||||||||| ||||| ||||||||||| | ||| |||||||
Sbjct: 362 gccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttc 303
Query: 571 ttctgctgagc 581
|||||||||||
Sbjct: 302 ttctgctgagc 292
>gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. vulgare cDNA clone HA10I02
3-PRIME, mRNA sequence
Length = 514
Score = 176 bits (89), Expect = 8e-043
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
|||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 482 gatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagca 423
Query: 394 atatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttc 453
|||||||||||| |||| |||||||| || || |||||||| || ||||| | |||||||
Sbjct: 422 atatcagttgtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttc 363
Query: 454 ataaagttcgacgagatgtcggagacttcatctagcca---tggggggcatacctcggcg 510
|||||||| || |||||||| ||||| || || ||||| ||| || || ||||| |
Sbjct: 362 ataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggccacacctctact 303
Query: 511 ggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttc 570
| ||||| ||| || ||||||||||| ||||| ||||||||||| | ||| |||||||
Sbjct: 302 gccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttc 243
Query: 571 ttctgctgagc 581
|||||||||||
Sbjct: 242 ttctgctgagc 232
>gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K21
3-PRIME, mRNA sequence
Length = 584
Score = 176 bits (89), Expect = 8e-043
Identities = 211/251 (84%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
|||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 543 gatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagca 484
Query: 394 atatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagttc 453
|||||||||||| |||| |||||||| || || |||||||| || ||||| | |||||||
Sbjct: 483 atatcagttgtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttc 424
Query: 454 ataaagttcgacgagatgtcggagacttcatctagcca---tggggggcatacctcggcg 510
|||||||| || |||||||| ||||| || || ||||| ||| || || ||||| |
Sbjct: 423 ataaagtttgatgagatgtccgagacgtcgtcgagccagggtggtggccacacctctact 364
Query: 511 ggcagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttc 570
| ||||| ||| || ||||||||||| ||||| ||||||||||| | ||| |||||||
Sbjct: 363 gccagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttc 304
Query: 571 ttctgctgagc 581
|||||||||||
Sbjct: 303 ttctgctgagc 293
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 105 bits (53), Expect = 2e-021
Identities = 164/201 (81%)
Strand = Plus / Plus
Query: 121 cccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcctgga 180
|||||||||||| |||| |||| ||||||||||||||||| || |||||||| ||||||
Sbjct: 319 cccaagttcacactgattgttgctcagaagaatcaccacacaaagtttttcatgcctgga 378
Query: 181 aagccagataatgttccagccggcactgttgttgacaacaaagtctgtcatccaaggaac 240
|| || ||||| || | |||||||||||||| || ||||| |||||||||||
Sbjct: 379 tctcctgacaatgtccctcctggcactgttgttgataatgctgtctgccatccaaggaat 438
Query: 241 ttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactat 300
| || || |||||||| | |||||||||||||||||||| || |||||||| || ||
Sbjct: 439 tatgacttttacatgtgcgctcatgctggaatgattgggacaacaaggccaacacattac 498
Query: 301 cacatcctgcatgacgagata 321
|| ||||||||||| ||||||
Sbjct: 499 catatcctgcatgatgagata 519
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 97.6 bits (49), Expect = 6e-019
Identities = 275/347 (79%), Gaps = 5/347 (1%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 163 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 222
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | || ||
Sbjct: 223 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtcca 282
Query: 357 ctcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctg 416
|||||| ||||| |||||||| |||||||| || || || ||||| | |||||| ||
Sbjct: 283 ctcgctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctccaatagc 342
Query: 417 ctacgcccaccttgcagccgcccaggttgggcag-ttcataaagttcgacgagatgtcgg 475
||||| || || || || || ||||| ||||| ||||| ||||| || || |||||||
Sbjct: 343 gtacgcgcatctggcggcggcgcaggt-gggcaccttcatgaagtttgaggacatgtcgg 401
Query: 476 agacttcatctagccatgggggg---catacctcggcgggcagcgtccctgtccaggagc 532
| ||||| || ||||| || ||| || || |||| |||||||| | | || | |||||
Sbjct: 402 acacttcgtcgagccagggagggggccacacgtcggtgggcagcgcctcggtgccggagc 461
Query: 533 tgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 508
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 87.7 bits (44), Expect = 6e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 365
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 87.7 bits (44), Expect = 6e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 396
>gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_N14 5', mRNA sequence
Length = 453
Score = 87.7 bits (44), Expect = 6e-016
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 55
>gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. vulgare cDNA clone HS17L21
3-PRIME, mRNA sequence
Length = 574
Score = 87.7 bits (44), Expect = 6e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 381
>gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
3-PRIME, mRNA sequence
Length = 521
Score = 87.7 bits (44), Expect = 6e-016
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 381
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 79.8 bits (40), Expect = 1e-013
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 528 ggagctgccccgtctgcatgagaaagtgaggagctccatgttcttctgctga 579
||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct: 513 ggagctgcctcggctgcatgagaaagtgaagagctccatgttcttctgctga 564
Score = 60.0 bits (30), Expect = 1e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 219 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 278
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | || ||
Sbjct: 279 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtcca 338
Query: 357 ctcgctctcttacgtgtaccaaaggagcac 386
|||||| ||||| |||||||| ||||||||
Sbjct: 339 ctcgctttcttatgtgtaccagaggagcac 368
>gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17o03 3', mRNA sequence
Length = 524
Score = 77.8 bits (39), Expect = 5e-013
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 541 ctgcatgagaaagtgaggagctccatgttcttctgctga 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgcatgagaaagtgaggagctccatgttcttctgctga 484
>gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019K06f, mRNA sequence
Length = 816
Score = 71.9 bits (36), Expect = 3e-011
Identities = 128/158 (81%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 427 cttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatct 486
|||||||| || ||||| | ||||||||||||||| || |||||||| ||||| || ||
Sbjct: 7 cttgcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcg 66
Query: 487 agcca---tggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctg 543
||||| ||| || || ||||| | | ||||| ||| || ||||||||||| |||||
Sbjct: 67 agccagggtggtggccacacctctactgccagcggcccggtgcaggagctgcctcgtctc 126
Query: 544 catgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| | ||| ||||||||||||||||||
Sbjct: 127 catgagaaagtccgcagcagcatgttcttctgctgagc 164
>gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_D09 5', mRNA sequence
Length = 391
Score = 71.9 bits (36), Expect = 3e-011
Identities = 128/158 (81%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 427 cttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatct 486
|||||||| || ||||| | ||||||||||||||| || |||||||| ||||| || ||
Sbjct: 7 cttgcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcg 66
Query: 487 agcca---tggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctg 543
||||| ||| || || ||||| | | ||||| ||| || ||||||||||| |||||
Sbjct: 67 agccagggtggtggccacacctctactgccagcggcccggtgcaggagctgcctcgtctc 126
Query: 544 catgagaaagtgaggagctccatgttcttctgctgagc 581
||||||||||| | ||| ||||||||||||||||||
Sbjct: 127 catgagaaagtccgcagcagcatgttcttctgctgagc 164
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 67.9 bits (34), Expect = 5e-010
Identities = 121/150 (80%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 382 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 441
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | |||||
Sbjct: 442 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtgca 501
Query: 357 ctcgctctcttacgtgtaccaaaggagcac 386
|||||| ||||| |||||||| ||||||||
Sbjct: 502 ctcgctttcttatgtgtaccagaggagcac 531
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 541 ctgcatgagaaagtgaggagctccatgttcttctgctg 578
|||||||| ||||||| ||||| |||||||||||||||
Sbjct: 689 ctgcatgaaaaagtgatgagcttcatgttcttctgctg 726
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 63.9 bits (32), Expect = 8e-009
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 121 cccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcctgga 180
|||||||||||| |||| |||| ||||||||||||||||| || |||||||| ||||||
Sbjct: 484 cccaagttcacactgattgttgctcagaagaatcaccacacaaagtttttcatgcctgga 543
>gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ad02, mRNA sequence
Length = 537
Score = 63.9 bits (32), Expect = 8e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 352 gtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctccc 411
||||| ||||| | ||| |||| |||||||||| ||||||| |||||||||||| |||
Sbjct: 520 gtgcattcgcttttttatgtgttccaaaggagcccaacagcaatatcagttgtttttcca 461
Query: 412 atctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatg 471
|| || || || || ||||| | || ||||| |||||||||||||| || || ||||||
Sbjct: 460 atttggtatgcacattttgcaactgctcaggtggggcagttcataaaatttgatgagatg 401
Query: 472 tcggagac 479
|| |||||
Sbjct: 400 tccgagac 393
>gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J11u 3',
mRNA sequence
Length = 469
Score = 60.0 bits (30), Expect = 1e-007
Identities = 124/155 (80%), Gaps = 3/155 (1%)
Strand = Plus / Minus
Query: 430 gcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttcatctagc 489
||||| || ||||| | ||||||||||||||| || |||||||| ||||| || || |||
Sbjct: 469 gcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtcgtcgagc 410
Query: 490 ca---tggggggcatacctcggcgggcagcgtccctgtccaggagctgccccgtctgcat 546
|| ||| || || |||| | | ||||| ||| || ||||||||||| ||||| |||
Sbjct: 409 cagggtggtggccacacctntactgccagcggcccggtgcaggagctgcctcgtctccat 350
Query: 547 gagaaagtgaggagctccatgttcttctgctgagc 581
|||||||| | ||| ||||||||||||||||||
Sbjct: 349 gagaaagtccgcagcagcatgttcttctgctgagc 315
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 60.0 bits (30), Expect = 1e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 304 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 363
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | || ||
Sbjct: 364 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtcca 423
Query: 357 ctcgctctcttacgtgtaccaaaggagcac 386
|||||| ||||| |||||||| ||||||||
Sbjct: 424 ctcgctttcttatgtgtaccagaggagcac 453
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 60.0 bits (30), Expect = 1e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 210 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 269
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | || ||
Sbjct: 270 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtcca 329
Query: 357 ctcgctctcttacgtgtaccaaaggagcac 386
|||||| ||||| |||||||| ||||||||
Sbjct: 330 ctcgctttcttatgtgtaccagaggagcac 359
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 60.0 bits (30), Expect = 1e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgggactaccaggccaactca 296
|||||| || |||||||||||| | |||||||| |||||||| || | |||||||| ||
Sbjct: 195 gaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgca 254
Query: 297 ctatcacatcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgca 356
|| || | |||||||| ||||| ||||||| | || || || |||||| | || ||
Sbjct: 255 ttaccatgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtcca 314
Query: 357 ctcgctctcttacgtgtaccaaaggagcac 386
|||||| ||||| |||||||| ||||||||
Sbjct: 315 ctcgctttcttatgtgtaccagaggagcac 344
>gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. vulgare cDNA clone HI05M20
3-PRIME, mRNA sequence
Length = 407
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 513 cagcgtccctgtccaggagctgccccgtctgcatgagaaagtgaggagctccatgttctt 572
||||| ||| || ||||||||||| ||||| ||||||||||| | ||| |||||||||
Sbjct: 367 cagcggcccggtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttctt 308
Query: 573 ctgctgagc 581
|||||||||
Sbjct: 307 ctgctgagc 299
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 334 gatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagcc 393
|||||| ||||||| || | ||| || |||||||| |||||||| |||||| ||||||||
Sbjct: 826 gatgacttgcaggatcttgggcattccctctcttatgtgtaccanaggagc-caacagcc 884
Query: 394 atatcag 400
|||||||
Sbjct: 885 atatcag 891
Score = 42.1 bits (21), Expect = 0.030
Identities = 51/60 (85%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 121 cccaagttcacattgatcattgcccagaagaatcaccacactaaatttttcattcctgga 180
|||||||||||| |||| |||| ||||||||| ||||||| | |||||||| ||||||
Sbjct: 616 cccaagttcacactgattgttgctcagaagaat-accacacanagtttttcatgcctgga 674
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 370 gtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgcccacctt 429
|||||||| |||||||| || || ||||| || || || || ||||| ||||| ||||||
Sbjct: 319 gtgtaccagaggagcaccactgcaatatctgtggtggcacctatctgttacgcgcacctt 378
Query: 430 gcagccgcccaggttgggcagttcataaagttcga 464
||||| || ||| | | ||||||||||| |||||
Sbjct: 379 gcagcagcgcagatgagccagttcataaaattcga 413
>gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_K14 5', mRNA sequence
Length = 388
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 558 gagctccatgttcttctgctga 579
||||||||||||||||||||||
Sbjct: 1 gagctccatgttcttctgctga 22
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.008
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 237 gaacttcgatttctacatgtgttcacatgctggaatgattgg 278
|||||| || |||||||||||| | |||||||| ||||||||
Sbjct: 618 gaactttgacttctacatgtgtgcgcatgctgggatgattgg 659
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,334
Number of Sequences: 312970
Number of extensions: 79334
Number of successful extensions: 19364
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19255
Number of HSP's gapped (non-prelim): 90
length of query: 867
length of database: 175,134,539
effective HSP length: 19
effective length of query: 848
effective length of database: 169,188,109
effective search space: 143471516432
effective search space used: 143471516432
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)