BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995014.1|BU995014 HM08O20r HM Hordeum vulgare subsp. v... 523 e-147
gb|BU998986.1|BU998986 HI12N05r HI Hordeum vulgare subsp. v... 502 e-140
gb|AL507001.1|AL507001 AL507001 Hordeum vulgare Barke devel... 448 e-124
gb|AL507890.1|AL507890 AL507890 Hordeum vulgare Barke devel... 414 e-114
gb|CD663105.1|CD663105 UCRHV18_04be04_b1 Drought-stressed D... 412 e-113
gb|CB881044.1|CB881044 HM08J17w HM Hordeum vulgare subsp. v... 398 e-109
gb|CA022106.1|CA022106 HZ42C22r HZ Hordeum vulgare subsp. v... 234 5e-060
gb|CB881152.1|CB881152 HM08O20w HM Hordeum vulgare subsp. v... 212 2e-053
gb|BU994916.1|BU994916 HM08J17r HM Hordeum vulgare subsp. v... 200 7e-050
gb|BM101220.2|BM101220 EBpi01_SQ003_D21_R pistil, 1 DPA, no... 163 1e-038
gb|CB860151.1|CB860151 HI12N05w HI Hordeum vulgare subsp. v... 163 1e-038
gb|BQ763819.1|BQ763819 EBro03_SQ005_B16_R root, 3 week, wat... 127 8e-028
gb|CK122942.1|CK122942 BES1824101g06 BES1824 Hordeum vulgar... 125 3e-027
gb|BQ464213.1|BQ464213 HF01K13T HF Hordeum vulgare subsp. v... 115 3e-024
gb|BQ465558.1|BQ465558 HU04A05r HU Hordeum vulgare subsp. v... 115 3e-024
gb|CA005298.1|CA005298 HU11C04u HU Hordeum vulgare subsp. v... 115 3e-024
gb|BU967312.1|BU967312 HB03O11r BC Hordeum vulgare subsp. v... 113 1e-023
gb|BU971207.1|BU971207 HB16O21r BC Hordeum vulgare subsp. v... 113 1e-023
gb|BQ471031.1|BQ471031 HX04M04r HX Hordeum vulgare subsp. v... 109 2e-022
gb|BQ665702.1|BQ665702 HX04M04u HX Hordeum vulgare subsp. v... 109 2e-022
gb|BE421191.1|BE421191 HWM006.G04 ITEC HWM Barley Leaf Libr... 80 2e-013
gb|BE422031.1|BE422031 HWM019cB.10r ITEC HWM Barley Leaf Li... 76 3e-012
gb|BG343905.2|BG343905 HVSMEg0007B08f Hordeum vulgare pre-a... 74 1e-011
gb|BE601667.3|BE601667 HVSMEh0099C03f Hordeum vulgare 5-45 ... 70 2e-010
gb|BM369604.2|BM369604 EBem07_SQ004_B17_R embryo, 28 DPA, n... 70 2e-010
gb|BM816972.1|BM816972 HB107D11_SK.ab1 HB Hordeum vulgare s... 66 3e-009
gb|CA015149.1|CA015149 HT13G24r HT Hordeum vulgare subsp. v... 66 3e-009
gb|CA024367.1|CA024367 HZ49B19r HZ Hordeum vulgare subsp. v... 66 3e-009
gb|CA028306.1|CA028306 HZ61J14r HZ Hordeum vulgare subsp. v... 66 3e-009
gb|BU973214.1|BU973214 HB24C10r BC Hordeum vulgare subsp. v... 58 6e-007
gb|CA001021.1|CA001021 HS05M05u HS Hordeum vulgare subsp. v... 54 1e-005
gb|BQ762722.1|BQ762722 EBro02_SQ004_J20_R root, 3 week, hyd... 52 4e-005
gb|BF257627.2|BF257627 HVSMEf0013G08f Hordeum vulgare seedl... 48 6e-004
gb|BQ660739.1|BQ660739 HI05D11u HI Hordeum vulgare subsp. v... 48 6e-004
gb|BQ663777.1|BQ663777 HU04A05u HU Hordeum vulgare subsp. v... 48 6e-004
gb|BQ665188.1|BQ665188 HX02H16u HX Hordeum vulgare subsp. v... 48 6e-004
gb|BU987042.1|BU987042 HF13K08r HF Hordeum vulgare subsp. v... 48 6e-004
gb|CA014730.1|CA014730 HT12D03r HT Hordeum vulgare subsp. v... 48 6e-004
gb|CB860120.1|CB860120 HI12L17w HI Hordeum vulgare subsp. v... 48 6e-004
gb|CB881802.1|CB881802 HM10O18w HM Hordeum vulgare subsp. v... 48 6e-004
gb|BI948576.1|BI948576 HVSMEl0010C03f Hordeum vulgare spike... 46 0.002
gb|BE216058.3|BE216058 HV_CEb0009E12f Hordeum vulgare seedl... 46 0.002
gb|BE603237.2|BE603237 HVSMEh0102L08f Hordeum vulgare 5-45 ... 42 0.037
gb|BM369249.2|BM369249 EBem07_SQ003_A17_R embryo, 28 DPA, n... 42 0.037
gb|BM369492.2|BM369492 EBem07_SQ003_L23_R embryo, 28 DPA, n... 42 0.037
gb|BM368454.2|BM368454 EBem08_SQ002_F06_R embryo, 40 DPA, n... 42 0.037
gb|CA001846.1|CA001846 HS05M05r HS Hordeum vulgare subsp. v... 42 0.037
gb|CA007409.1|CA007409 HU07O02r HU Hordeum vulgare subsp. v... 42 0.037
gb|CA013229.1|CA013229 HT07M09r HT Hordeum vulgare subsp. v... 42 0.037
gb|CV056271.1|CV056271 BNEL15H10 Barley EST endosperm libra... 42 0.037
gb|BI957523.1|BI957523 HVSMEn0009P18f Hordeum vulgare rachi... 40 0.15
gb|BQ470305.1|BQ470305 HX02H16r HX Hordeum vulgare subsp. v... 40 0.15
gb|BM442576.2|BM442576 EBan01_SQ003_J04_R anther, yellow st... 40 0.15
gb|BI776244.2|BI776244 EBem04_SQ001_C10_R embryo, 12 DPA, n... 40 0.15
gb|BM443042.2|BM443042 EBro02_SQ002_E20_R root, 3 week, hyd... 40 0.15
gb|BQ764178.1|BQ764178 EBan01_SQ005_H05 _R anther, yellow s... 40 0.15
gb|BQ764250.1|BQ764250 EBan01_SQ005_F10_R anther, yellow st... 40 0.15
gb|BQ764434.1|BQ764434 EBan01_SQ005_I22_R anther, yellow st... 40 0.15
gb|BU990528.1|BU990528 HF25F03r HF Hordeum vulgare subsp. v... 40 0.15
gb|BU997011.1|BU997011 HI06J17r HI Hordeum vulgare subsp. v... 40 0.15
gb|BU999717.1|BU999717 HI15H15r HI Hordeum vulgare subsp. v... 40 0.15
gb|CA007733.1|CA007733 HU08N16r HU Hordeum vulgare subsp. v... 40 0.15
gb|CA027036.1|CA027036 HZ57L10r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CA027334.1|CA027334 HZ58J11r HZ Hordeum vulgare subsp. v... 40 0.15
>gb|BU995014.1|BU995014 HM08O20r HM Hordeum vulgare subsp. vulgare cDNA clone HM08O20
5-PRIME, mRNA sequence
Length = 615
Score = 523 bits (264), Expect = e-147
Identities = 420/472 (88%)
Strand = Plus / Minus
Query: 597 ccagcatcttcaatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaaca 656
||||| ||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 615 ccagcttcttcaatacgttgccgctcatctgtctgatcaggcttgtgatctttcgaaaca 556
Query: 657 gcaatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaag 716
| | |||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 555 ggtacagcatttcctgccctgcatatgatagccctggagtctccaacatttgcgacaaag 496
Query: 717 agacgatcaccaacaagtacagcagttgatgcagttgacccacattgattttgactactg 776
|||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||||
Sbjct: 495 agacgatcaccaacaagtacagcagttgatgcggttgacccacactggttttgagtactg 436
Query: 777 tcagattctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagta 836
|||||||| ||||| ||||||||||| |||||||||| |||||||||||| ||||| ||
Sbjct: 435 tcagattccaagaactcactgtcggtacttttataagaatcatctatagccacttttgtg 376
Query: 837 tcactgatgaactttggatgactaacaagattgttgaacaggttttctttaacatactct 896
||||| |||||||||||||| |||| ||||| | |||| ||||| | ||| |||||||||
Sbjct: 375 tcactcatgaactttggatgcctaagaagatggctgaagaggttgtgtttcacatactct 316
Query: 897 gctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatca 956
||||| |||||||||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct: 315 gctactttagcaccaccatgaccatcaaaaactccaaatagaccaataagctgcccatcg 256
Query: 957 acacaatcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagctt 1016
|||| |||||| |||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 255 acactttcaattcttgtctcataaaagtcttccatggaagcccttttaccgagggagctc 196
Query: 1017 gcatagccatagctaaatctaccattctggctgaggccgccgccgctgacgg 1068
||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 195 gcataaccatagctaaacttactattctggctgaggccgccgccgctgacgg 144
>gb|BU998986.1|BU998986 HI12N05r HI Hordeum vulgare subsp. vulgare cDNA clone HI12N05
5-PRIME, mRNA sequence
Length = 600
Score = 502 bits (253), Expect = e-140
Identities = 408/460 (88%)
Strand = Plus / Minus
Query: 609 atacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcattt 668
||||| ||||||||||| || ||||||||||||||||| || ||||||| | |||||||
Sbjct: 600 atacgttgccgctcatctgtctgatcaggcttgtgatctttcgaaacaggtacagcattt 541
Query: 669 ccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacgatcacca 728
||| |||||||||||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct: 540 cctgccctgcatatgatagcnctggagtctccaacatttgcgacaaagagacgatcacca 481
Query: 729 acaagtacagcagttgatgcagttgacccacattgattttgactactgtcagattctaag 788
|||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||
Sbjct: 480 acaagtacagcagttgatgcggttgacccacactggttttgagtactgtcagattccaag 421
Query: 789 aattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactgatgaac 848
|| ||||||||||| |||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 420 aactcactgtcggtacttttataagaatcatctatagccacttttgtgtcactcatgaac 361
Query: 849 tttggatgactaacaagattgttgaacaggttttctttaacatactctgctaccttagca 908
|||||||| |||| ||||| | |||| ||||| | ||| |||||||||||||| ||||||
Sbjct: 360 tttggatgcctaagaagatggctgaagaggttgtgtttcacatactctgctactttagca 301
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
|||||||||||||||||||||||||| ||||||| | ||| ||||| |||| ||||||
Sbjct: 300 ccaccatgaccatcaaaaactccaaatagaccaataagctgcccatcgacactttcaatt 241
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatag 1028
|||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||
Sbjct: 240 cttgtctcataaaagtcttccatggaagcccttttaccgagggagctcgcataaccatag 181
Query: 1029 ctaaatctaccattctggctgaggccgccgccgctgacgg 1068
||||| ||| |||||||||||||||||||||||||||||
Sbjct: 180 ctaaacttactattctggctgaggccgccgccgctgacgg 141
>gb|AL507001.1|AL507001 AL507001 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N23T 5',
mRNA sequence
Length = 560
Score = 448 bits (226), Expect = e-124
Identities = 361/407 (88%)
Strand = Plus / Minus
Query: 662 agcatttccttccctgcatatgatagccctagagtcaccaacatttgcgacgaagagacg 721
|||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 547 agcatttcctgccctgcatatgatagccctggagtctccaacatttgcgacaaagagacg 488
Query: 722 atcaccaacaagtacagcagttgatgcagttgacccacattgattttgactactgtcaga 781
||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||
Sbjct: 487 atcaccaacaagtacagcagttgatgcggttgacccacactggttttgagtactgtcaga 428
Query: 782 ttctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcact 841
||| ||||| ||||||||||| ||||||||| |||||||||||| ||||| || |||||
Sbjct: 427 ttccaagaactcactgtcggtacttttataanaatcatctatagccacttttgtgtcact 368
Query: 842 gatgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgctac 901
|||||||||||||| |||| ||||| | |||| ||||| | ||| ||||||| ||||||
Sbjct: 367 catgaactttggatgcctaagaagatggctgaagaggttgtgtttcacatactntgctac 308
Query: 902 cttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacaca 961
||||| |||||||||||||||||||||||||| ||||||| | ||| ||||| ||||
Sbjct: 307 tttagcnccaccatgaccatcaaaaactccaaatagaccaataagctgcccatcgacact 248
Query: 962 atcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcata 1021
|||||| |||||||||| |||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 247 ttcaattcttgtctcataaaagtcttccatggaagcccttttaccgagggagctcgcata 188
Query: 1022 gccatagctaaatctaccattctggctgaggccgccgccgctgacgg 1068
||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 187 accatagctaaacttactattctggctgaggccgccgccgctgacgg 141
>gb|AL507890.1|AL507890 AL507890 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07C13V 5',
mRNA sequence
Length = 541
Score = 414 bits (209), Expect = e-114
Identities = 358/406 (88%), Gaps = 2/406 (0%)
Strand = Plus / Minus
Query: 665 atttccttccctgcatatgatagccc-tagagtcaccaacatttgcgacgaagagacgat 723
||||||| || ||||||||||||||| | ||||| |||||||||||||| ||||| ||||
Sbjct: 541 atttcctgccntgcatatgatagcccctggagtctccaacatttgcgacaaagagncgat 482
Query: 724 caccaacaagtacagcagttgatgcag-ttgacccacattgattttgactactgtcagat 782
||||||||||||||||||||||||| | |||||||||| || |||||| |||||||||||
Sbjct: 481 caccaacaagtacagcagttgatgcgggttgacccacactggttttgagtactgtcagat 422
Query: 783 tctaagaattcactgtcggtgcttttataagcatcatctatagcgactttagtatcactg 842
|| ||||| ||||||||||| |||||||||| |||||||||||| ||||| || |||||
Sbjct: 421 tccaagaactcactgtcggtacttttataagaatcatctatagccacttttgtgtcactc 362
Query: 843 atgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacc 902
|||| ||||||||| |||| ||||| | |||| ||||| | ||| ||||||||||||||
Sbjct: 361 atganctttggatgcctaagaagatggctgaagaggttgtgtttcacatactctgctact 302
Query: 903 ttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaa 962
|||||||||||||||||||||||||||||||| ||||||| | ||| ||||| ||||
Sbjct: 301 ttagcaccaccatgaccatcaaaaactccaaatagaccaataagctgcccatcgacactt 242
Query: 963 tcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatag 1022
|||||| |||||||||| |||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 241 tcaattcttgtctcataaaagtcttccatggaagcccttttaccgagggagctcgcataa 182
Query: 1023 ccatagctaaatctaccattctggctgaggccgccgccgctgacgg 1068
||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 181 ccatagctaaacttactattctggctgaggccgccgccgctgacgg 136
>gb|CD663105.1|CD663105 UCRHV18_04be04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_04be04, mRNA sequence
Length = 770
Score = 412 bits (208), Expect = e-113
Identities = 367/420 (87%)
Strand = Plus / Plus
Query: 257 gctttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttat 316
|||||||||| ||||| || ||||| ||||| |||||| |||| |||||||| |||||
Sbjct: 351 gctttaagcgggcccgctactcccttgaccatggaagaagcgcacaacgacgcaggttat 410
Query: 317 gttgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgg 376
||||||||||||||||| |||||| ||||| ||||||||| |||| ||||| || |||||
Sbjct: 411 gttgtcactgctctcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgg 470
Query: 377 gtcctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagccc 436
||| || || || | ||||| ||||||| ||||||||||||||||||||||| || ||
Sbjct: 471 gtcttgtatcgaccgggtcatgtcgacagcctcctcgttagagaccacatcccaaagtcc 530
Query: 437 atcacttgcaaggataagaaactcgagtgtgtcatcaacaacctcctctcggatctccgg 496
||| ||||||||||| |||||||| || | |||||||| | ||||| |||||||| ||
Sbjct: 531 atcgcttgcaaggatgagaaactccagggactcatcaacgatttcctcccggatctctgg 590
Query: 497 atccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtac 556
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 591 atccacaactacatattgctttaagagcttgtcaccaaaagcacgagaaacagcaagtac 650
Query: 557 accaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctg 616
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 651 accaccaacgcgccatgttcctgcccacataacaaaacctccagcttcttcaatacgttg 710
Query: 617 ccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccct 676
||||||||| || ||||||||||||||||| || ||||||| | |||||||||| ||||
Sbjct: 711 ccgctcatctgtctgatcaggcttgtgatctttcgaaacaggtacagcatttcctgccct 770
>gb|CB881044.1|CB881044 HM08J17w HM Hordeum vulgare subsp. vulgare cDNA clone HM08J17
3-PRIME, mRNA sequence
Length = 619
Score = 398 bits (201), Expect = e-109
Identities = 333/377 (88%)
Strand = Plus / Plus
Query: 270 ccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgttgtcactgctc 329
||||| || ||||| ||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct: 238 ccgctactcccttgaccatggaagaagcgcacaacgacgcaggttatgttgtcactgctc 297
Query: 330 tccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtcctgaatggat 389
|||| |||||| ||||| ||||||||| |||| ||||| || |||||||| || |||||
Sbjct: 298 tcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgggtcttgtatggac 357
Query: 390 ctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccatcacttgcaagg 449
| ||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 358 cgggtcatgtcgacagcctcctcgttagagaccacatcccaaagtccatcgcttgcaagg 417
Query: 450 ataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggatccacaaccaca 509
|| |||||||| || | |||||||| | ||||| |||||||| ||||||||||| |||
Sbjct: 418 atgagaaactccagggactcatcaacgatttcctcccggatctctggatccacaactaca 477
Query: 510 tattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgc 569
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 478 tattgctttaatagcttgtcaccaaaagcacgagaaacagcaagtacaccaccaacgcgc 537
Query: 570 catgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtt 629
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 538 catgttcctgcccacataacaaaacctccagcttcttcaatacgttgccgctcatctgtc 597
Query: 630 tgatcaggcttgtgatc 646
|||||||||||||||||
Sbjct: 598 tgatcaggcttgtgatc 614
>gb|CA022106.1|CA022106 HZ42C22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42C22
5-PRIME, mRNA sequence
Length = 530
Score = 234 bits (118), Expect = 5e-060
Identities = 199/226 (88%)
Strand = Plus / Minus
Query: 843 atgaactttggatgactaacaagattgttgaacaggttttctttaacatactctgctacc 902
|||||||||||||| |||| ||||| | |||| ||||| | ||| ||||||||||||||
Sbjct: 380 atgaactttggatgcctaagaagatggctgaagaggttgtgtttcacatactctgctact 321
Query: 903 ttagcaccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaa 962
|||||||||||||||||||||||||||||||| ||||||| | ||| ||||| ||||
Sbjct: 320 ttagcaccaccatgaccatcaaaaactccaaatagaccaataagctgcccatcgacactt 261
Query: 963 tcaatttttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatag 1022
|||||| |||||||||| |||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 260 tcaattcttgtctcataaaagtcttccatggaagcccttttaccgagggagctcgcataa 201
Query: 1023 ccatagctaaatctaccattctggctgaggccgccgccgctgacgg 1068
||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 200 ccatagctaaacttactattctggctgaggccgccgccgctgacgg 155
Score = 145 bits (73), Expect = 3e-033
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 312 gttatgttgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctct 371
|||||||||||||||||||||| |||||| ||||| ||||||||| |||| ||||| ||
Sbjct: 529 gttatgttgtcactgctctcccgcttgtaggcctcctgcaagagcctcttcgcagcttcc 470
Query: 372 tctgggtcctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccac 431
|||||||| || ||||| | ||||| ||||||| |||||||||||||||||||||||
Sbjct: 469 tctgggtcttgtatggaccgggtcatgtcgacagcctcctcgttagagaccacatcccaa 410
Query: 432 agcccatcacttgcaaggataagaaactc 460
|| ||||| ||||||||||| ||||||||
Sbjct: 409 agtccatcgcttgcaaggatgagaaactc 381
>gb|CB881152.1|CB881152 HM08O20w HM Hordeum vulgare subsp. vulgare cDNA clone HM08O20
3-PRIME, mRNA sequence
Length = 630
Score = 212 bits (107), Expect = 2e-053
Identities = 215/251 (85%)
Strand = Plus / Plus
Query: 270 ccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgttgtcactgctc 329
||||| || ||||| ||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct: 376 ccgctactcccttgaccatggaagaagcgcacaacgacgcaggttatgttgtcactgctc 435
Query: 330 tccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtcctgaatggat 389
|||| |||||| ||||| ||||||||| |||| ||||| || |||||||| || |||||
Sbjct: 436 tcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgggtcttgtatggac 495
Query: 390 ctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccatcacttgcaagg 449
| ||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 496 cgggtcatgtcgacagcctcctcgttagagaccacatcccaaagtccatcgcttgcaagg 555
Query: 450 ataagaaactcgagtgtgtcatcaacaacctcctctcggatctccggatccacaaccaca 509
|| |||||||| || | |||||||| | ||||| |||||||| ||||||||||| |||
Sbjct: 556 atgagaaactccagggactcatcaacgatttcctcccggatctctggatccacaactaca 615
Query: 510 tattgctttaa 520
|||||||||||
Sbjct: 616 tattgctttaa 626
>gb|BU994916.1|BU994916 HM08J17r HM Hordeum vulgare subsp. vulgare cDNA clone HM08J17
5-PRIME, mRNA sequence
Length = 599
Score = 200 bits (101), Expect = 7e-050
Identities = 161/181 (88%)
Strand = Plus / Minus
Query: 888 acatactctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatc 947
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| | |
Sbjct: 589 acatactctgctactttagcacccccatgaccatcaaaaactccaaatagaccaataagc 530
Query: 948 tggccatcaacacaatcaatttttgtctcatagaagtcttccatggatgcccttttacca 1007
|| ||||| |||| |||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 529 tgcccatcgacactttcaattcttgtctcataaaagtcttccatggaagcccttttaccg 470
Query: 1008 ggggagcttgcatagccatagctaaatctaccattctggctgaggccgccgccgctgacg 1067
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 469 agggagctcgcataaccatagctaaacttactattctggctgaggccgccgccgctgacg 410
Query: 1068 g 1068
|
Sbjct: 409 g 409
>gb|BM101220.2|BM101220 EBpi01_SQ003_D21_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_D21 5', mRNA sequence
Length = 534
Score = 163 bits (82), Expect = 1e-038
Identities = 172/202 (85%)
Strand = Plus / Minus
Query: 257 gctttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttat 316
|||||||||| ||||| || ||||| ||||| |||||| |||| |||||||| |||||
Sbjct: 202 gctttaagcgggcccgctactcccttgaccatggaagaagcgcacaacgacgcaggttat 143
Query: 317 gttgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgg 376
||||||||||||||||| |||||| ||||| ||||||||| |||| ||||| || |||||
Sbjct: 142 gttgtcactgctctcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgg 83
Query: 377 gtcctgaatggatctagtcatcgcgacagcttcctcgttagagaccacatcccacagccc 436
||| || || || | ||||| ||||||| ||||||||||||||||||||||| || ||
Sbjct: 82 gtcttgtatcgaccgggtcatgtcgacagcctcctcgttagagaccacatcccaaagtcc 23
Query: 437 atcacttgcaaggataagaaac 458
||| ||||||||||| ||||||
Sbjct: 22 atcgcttgcaaggatgagaaac 1
>gb|CB860151.1|CB860151 HI12N05w HI Hordeum vulgare subsp. vulgare cDNA clone HI12N05
3-PRIME, mRNA sequence
Length = 558
Score = 163 bits (82), Expect = 1e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 270 ccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgttgtcactgctc 329
||||| || ||||| ||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct: 376 ccgctactcccttgaccatggaagaagcgcacaacgacgcaggttatgttgtcactgctc 435
Query: 330 tccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtcctgaatggat 389
|||| |||||| ||||| ||||||||| |||| ||||| || |||||||| || |||||
Sbjct: 436 tcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgggtcttgtatggac 495
Query: 390 ctagtcatcgcgacagcttcctcgttagagaccacatcccacagcccatcacttgcaagg 449
| ||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 496 cgggtcatgtcgacagcctcctcgttagagaccacatcccaaagtccatcgcttgcaagg 555
Query: 450 at 451
||
Sbjct: 556 at 557
>gb|BQ763819.1|BQ763819 EBro03_SQ005_B16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B16 5', mRNA sequence
Length = 535
Score = 127 bits (64), Expect = 8e-028
Identities = 142/168 (84%)
Strand = Plus / Minus
Query: 257 gctttaagcgtatccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttat 316
|||||||||| ||||| || ||||| ||||| |||||| |||| |||||||| |||||
Sbjct: 168 gctttaagcgggcccgctactcccttgaccatggaagaagcgcacaacgacgcaggttat 109
Query: 317 gttgtcactgctctccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgg 376
||||||||||||||||| |||||| ||||| ||||||||| |||| ||||| || |||||
Sbjct: 108 gttgtcactgctctcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgg 49
Query: 377 gtcctgaatggatctagtcatcgcgacagcttcctcgttagagaccac 424
||| || || || | ||||| ||||||| |||||||||||||||||
Sbjct: 48 gtcttgtatcgaccgggtcatgtcgacagcctcctcgttagagaccac 1
>gb|CK122942.1|CK122942 BES1824101g06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G061 5-PRIME, mRNA sequence
Length = 774
Score = 125 bits (63), Expect = 3e-027
Identities = 213/263 (80%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 659 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 600
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|||| | || || |||||||| |||||| || || | || ||||| ||||||||
Sbjct: 599 agtgagctgtcgaccacctcctccttgatctctgggtcagctacaacatactgctttaaa 540
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || |||
Sbjct: 539 agtttatcaccaaaggctcgagaaacagcaagaacaccaccaacacgccatgtcccagcc 480
Query: 582 cacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttg 641
||||||||||| |||||||| || ||||| | ||| | ||| || || || ||||| |||
Sbjct: 479 cacatcacaaagcctccagcttcctcaattctctgtctctcgtctgtctggtcaggtttg 420
Query: 642 tgatcctttgaaacagcaatagc 664
|||||| | ||||| ||||||||
Sbjct: 419 tgatccctggaaaccgcaatagc 397
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 149 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 90
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 89 cttgtctcgtagaaatcctccattgatgcccttttcccag 50
>gb|BQ464213.1|BQ464213 HF01K13T HF Hordeum vulgare subsp. vulgare cDNA clone HF01K13
5-PRIME, mRNA sequence
Length = 551
Score = 115 bits (58), Expect = 3e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||||| |||||||| || || ||||||||||| |||||||||||
Sbjct: 541 acatactgctttaaaagtttatcaccaaaggctcgagaaacagcaagaacaccaccaaca 482
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||||||||| |||||||| || ||||| | ||| | ||| ||
Sbjct: 481 cgccatgtcccagcccacatcacaaagcctccagcttcctcaattctctgtctctcgtct 422
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|| || ||||| ||||||||| | ||||| ||||||||
Sbjct: 421 gtctggtcaggtttgtgatccctggaaaccgcaatagc 384
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 136 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 77
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 76 cttgtctcgtagaaatcctccattgatgcccttttcccag 37
>gb|BQ465558.1|BQ465558 HU04A05r HU Hordeum vulgare subsp. vulgare cDNA clone HU04A05
5-PRIME, mRNA sequence
Length = 660
Score = 115 bits (58), Expect = 3e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||||| |||||||| || || ||||||||||| |||||||||||
Sbjct: 574 acatactgctttaaaagtttatcaccaaaggctcgagaaacagcaagaacaccaccaaca 515
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||||||||| |||||||| || ||||| | ||| | ||| ||
Sbjct: 514 cgccatgtcccagcccacatcacaaagcctccagcttcctcaattctctgtctctcgtct 455
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|| || ||||| ||||||||| | ||||| ||||||||
Sbjct: 454 gtctggtcaggtttgtgatccctggaaaccgcaatagc 417
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 169 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 110
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 109 cttgtctcgtagaaatcctccattgatgcccttttcccag 70
>gb|CA005298.1|CA005298 HU11C04u HU Hordeum vulgare subsp. vulgare cDNA clone HU11C04
3-PRIME, mRNA sequence
Length = 567
Score = 115 bits (58), Expect = 3e-024
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||||| |||||||| || || ||||||||||| |||||||||||
Sbjct: 515 acatactgctttaaaagtttatcaccaaaggctcgagaaacagcaagaacaccaccaaca 456
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||||||||| |||||||| || ||||| | ||| | ||| ||
Sbjct: 455 cgccatgtcccagcccacatcacaaagcctccagcttcctcaattctctgtctctcgtct 396
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|| || ||||| ||||||||| | ||||| ||||||||
Sbjct: 395 gtctggtcaggtttgtgatccctggaaaccgcaatagc 358
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 110 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 51
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 50 cttgtctcgtagaaatcctccattgatgcccttttcccag 11
>gb|BU967312.1|BU967312 HB03O11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03O11
5-PRIME, mRNA sequence
Length = 646
Score = 113 bits (57), Expect = 1e-023
Identities = 171/209 (81%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 220 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 161
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|||| | || || |||||||| |||||| || || | || ||||| ||||||||
Sbjct: 160 agtgagctgtcgaccacctcctccttgatctctgggtcagctacaacatactgctttaaa 101
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || |||
Sbjct: 100 agtttatcaccaaaggctcgagaaacagcaagaacaccaccaacacgccatgtcccagcc 41
Query: 582 cacatcacaaaacctccagcatcttcaat 610
||||||||||| |||||||| || |||||
Sbjct: 40 cacatcacaaagcctccagcttcctcaat 12
>gb|BU971207.1|BU971207 HB16O21r BC Hordeum vulgare subsp. vulgare cDNA clone HB16O21
5-PRIME, mRNA sequence
Length = 420
Score = 113 bits (57), Expect = 1e-023
Identities = 171/209 (81%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 238 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 179
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|||| | || || |||||||| |||||| || || | || ||||| ||||||||
Sbjct: 178 agtgagctgtcgaccacctcctccttgatctctgggtcagctacaacatactgctttaaa 119
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || |||
Sbjct: 118 agtttatcaccaaaggctcgagaaacagcaagaacaccaccaacacgccatgtcccagcc 59
Query: 582 cacatcacaaaacctccagcatcttcaat 610
||||||||||| |||||||| || |||||
Sbjct: 58 cacatcacaaagcctccagcttcctcaat 30
>gb|BQ471031.1|BQ471031 HX04M04r HX Hordeum vulgare subsp. vulgare cDNA clone HX04M04
5-PRIME, mRNA sequence
Length = 700
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 270 ccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgttgtcactgctc 329
||||| || ||||| ||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct: 145 ccgctactcccttgaccatggaagaagcgcacaacgacgcaggttatgttgtcactgctc 86
Query: 330 tccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtcctgaatgga 388
|||| |||||| ||||| ||||||||| |||| ||||| || |||||||| || |||||
Sbjct: 85 tcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgggtcttgtatgga 27
>gb|BQ665702.1|BQ665702 HX04M04u HX Hordeum vulgare subsp. vulgare cDNA clone HX04M04
3-PRIME, mRNA sequence
Length = 525
Score = 109 bits (55), Expect = 2e-022
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 270 ccgctgctaccttgcccatgcaagaagtgcacgacgacgcaagttatgttgtcactgctc 329
||||| || ||||| ||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct: 382 ccgctactcccttgaccatggaagaagcgcacaacgacgcaggttatgttgtcactgctc 441
Query: 330 tccctcttgtacgcctcttgcaagagcatctttgcagcctcttctgggtcctgaatgga 388
|||| |||||| ||||| ||||||||| |||| ||||| || |||||||| || |||||
Sbjct: 442 tcccgcttgtaggcctcctgcaagagcctcttcgcagcttcctctgggtcttgtatgga 500
>gb|BE421191.1|BE421191 HWM006.G04 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM006.G04, mRNA sequence
Length = 811
Score = 79.8 bits (40), Expect = 2e-013
Identities = 126/152 (82%), Gaps = 2/152 (1%)
Strand = Plus / Minus
Query: 515 ctttaagagtttgtcaccaaaag-cacgcgaaacagcaagtaca-ccaccaacgcgccat 572
|||||| ||||| ||||||| || | || ||||||||||| ||| |||||||| ||||||
Sbjct: 725 ctttaaaagtttatcaccaacaggctcgagaaacagcaagaacaaccaccaacacgccat 666
Query: 573 gttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttga 632
|| || |||||||||||||| |||||||| || ||||| | ||| | ||| || || ||
Sbjct: 665 gtcccagcccacatcacaaagcctccagcttcctcaattctctgtctctcgtctgtctgg 606
Query: 633 tcaggcttgtgatcctttgaaacagcaatagc 664
||||| ||||||||| | ||||| ||||||||
Sbjct: 605 tcaggtttgtgatccctggaaaccgcaatagc 574
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 326 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 267
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 266 cttgtctcgtagaaatcctccattgatgcccttttcccag 227
>gb|BE422031.1|BE422031 HWM019cB.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM019cB.10, mRNA sequence
Length = 1214
Score = 75.8 bits (38), Expect = 3e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||||| |||||||| || || ||||||||||| |||||||||||
Sbjct: 891 acatactgctttaaaagtttatcaccaaaggctcgagaaacagcaagaacaccaccaaca 832
Query: 567 cgccatgttcctgc 580
|||||||| |||||
Sbjct: 831 cgccatgtccctgc 818
Score = 52.0 bits (26), Expect = 4e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
|||||||||||||| |||||||| || ||||| | ||| | ||| || || || |||||
Sbjct: 728 gcccacatcacaaagcctccagcttcctcaattctctgtctctcgtctgtctggtcaggt 669
Query: 639 ttgtgatcctttgaaacagcaatagc 664
||||||||| | ||||| ||||||||
Sbjct: 668 ttgtgatccctggaaaccgcaatagc 643
>gb|BG343905.2|BG343905 HVSMEg0007B08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007B08f, mRNA sequence
Length = 850
Score = 73.8 bits (37), Expect = 1e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 176 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 117
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|||| | || || |||||||| ||||| || || | || ||||| ||||||||
Sbjct: 116 agtgagctgtcgaccacctcctccttgatctgtgggtcagctacaacatactgctttaaa 57
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgt 574
||||| |||||||| || || ||||||||||| ||||||||||| ||||||||
Sbjct: 56 agtttatcaccaaaggctcgagaaacagcaagaacaccaccaacacgccatgt 4
>gb|BE601667.3|BE601667 HVSMEh0099C03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099C03f, mRNA sequence
Length = 502
Score = 69.9 bits (35), Expect = 2e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 255 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 196
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
||||| || || || || |||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 195 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatcctc 136
Query: 608 aatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcat 666
|| | ||||| ||| || || || |||||||| || ||| |||| || || |||||||
Sbjct: 135 tatcctctgcctctcgtctgtctggtcaggcttatggtcccttgacaccgctatagcat 77
>gb|BM369604.2|BM369604 EBem07_SQ004_B17_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_B17 5', mRNA sequence
Length = 404
Score = 69.9 bits (35), Expect = 2e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 317 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 258
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatcttc 607
||||| || || || || |||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 257 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatcctc 198
Query: 608 aatacgctgccgctcatcagtttgatcaggcttgtgatcctttgaaacagcaatagcat 666
|| | ||||| ||| || || || |||||||| || ||| |||| || || |||||||
Sbjct: 197 tatcctctgcctctcgtctgtctggtcaggcttatggtcccttgacaccgctatagcat 139
>gb|BM816972.1|BM816972 HB107D11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB107D11_SK.ab1 similar to (AC022314) F9C16.6
[Arabidopsis thaliana], mRNA sequence
Length = 870
Score = 65.9 bits (33), Expect = 3e-009
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 662 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 603
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatc 604
||||| || || || || |||||||| ||||||||||| || || ||||| |||||
Sbjct: 602 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatc 546
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 177 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 118
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 117 taaacttaccattctcactgaacccgccgccactgac 81
>gb|CA015149.1|CA015149 HT13G24r HT Hordeum vulgare subsp. vulgare cDNA clone HT13G24
5-PRIME, mRNA sequence
Length = 593
Score = 65.9 bits (33), Expect = 3e-009
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 447 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 506
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatc 604
||||| || || || || |||||||| ||||||||||| || || ||||| |||||
Sbjct: 507 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatc 563
>gb|CA024367.1|CA024367 HZ49B19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49B19
5-PRIME, mRNA sequence
Length = 553
Score = 65.9 bits (33), Expect = 3e-009
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 181 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 122
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatc 604
||||| || || || || |||||||| ||||||||||| || || ||||| |||||
Sbjct: 121 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatc 65
>gb|CA028306.1|CA028306 HZ61J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61J14
5-PRIME, mRNA sequence
Length = 489
Score = 65.9 bits (33), Expect = 3e-009
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 181 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 122
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacatcacaaaacctccagcatc 604
||||| || || || || |||||||| ||||||||||| || || ||||| |||||
Sbjct: 121 ggcaagcacgccgcctacacgccatgtacctgcccacatgacgaagcctccggcatc 65
>gb|BU973214.1|BU973214 HB24C10r BC Hordeum vulgare subsp. vulgare cDNA clone HB24C10
5-PRIME, mRNA sequence
Length = 570
Score = 58.0 bits (29), Expect = 6e-007
Identities = 116/145 (80%)
Strand = Plus / Minus
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgttcctgcc 581
|||||||||||||| || || ||||| ||||| || || || || |||||||| ||||||
Sbjct: 562 agtttgtcaccaaacgctcgagaaacggcaagcacgccgcctacacgccatgtacctgcc 503
Query: 582 cacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggcttg 641
||||| || || ||||| ||||| || || | ||||| ||| || || || ||||||||
Sbjct: 502 cacatgacgaagcctccggcatcctctatcctctgcctctcgtctgtctggtcaggctta 443
Query: 642 tgatcctttgaaacagcaatagcat 666
|| ||| |||| || || |||||||
Sbjct: 442 tggtcccttgacaccgctatagcat 418
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 111 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 52
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 51 taaacttaccattctcactgaacccgccgccactgac 15
>gb|CA001021.1|CA001021 HS05M05u HS Hordeum vulgare subsp. vulgare cDNA clone HS05M05
3-PRIME, mRNA sequence
Length = 515
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 488 gatctccggatccacaaccacatattgctttaagagtttgtcaccaaaagcacgcgaaac 547
|||||| ||||| ||||||| || ||||| || |||||||||||||| || || |||||
Sbjct: 416 gatctctggatcggcaaccacgtactgcttcaacagtttgtcaccaaacgctcgagaaac 475
Query: 548 agcaagtacaccaccaacgcgccatgttcctgcccacat 586
| ||| || || || || |||||||| |||||||||||
Sbjct: 476 gggaagcacgccgcctacacgccatgtacctgcccacat 514
>gb|BQ762722.1|BQ762722 EBro02_SQ004_J20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_J20 5', mRNA sequence
Length = 686
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||||||||| |||||||| || ||||| | ||| | ||| ||
Sbjct: 683 cgccatgtcccagcccacatcacaaagcctccagcttcctcaattctctgtctctcgtct 624
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagc 664
|| || ||||| |||||||| | ||||| ||||||||
Sbjct: 623 gtctggtcaggtgtgtgatccctggaaaccgcaatagc 586
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaacacaatcaatt 968
||||| ||||||||||| || ||||| | ||||| ||| ||||||||| ||| | |
Sbjct: 338 ccaccgtgaccatcaaatacgccaaacaacccaacagtctctccatcaacatcatccact 279
Query: 969 tttgtctcatagaagtcttccatggatgcccttttaccag 1008
||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 278 cttgtctcgtagaaatcctccattgatgcccttttcccag 239
>gb|BF257627.2|BF257627 HVSMEf0013G08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013G08f, mRNA sequence
Length = 492
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 145 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 86
Query: 462 agtg 465
||||
Sbjct: 85 agtg 82
>gb|BQ660739.1|BQ660739 HI05D11u HI Hordeum vulgare subsp. vulgare cDNA clone HI05D11
3-PRIME, mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 139 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 80
Query: 462 agtg 465
||||
Sbjct: 79 agtg 76
>gb|BQ663777.1|BQ663777 HU04A05u HU Hordeum vulgare subsp. vulgare cDNA clone HU04A05
3-PRIME, mRNA sequence
Length = 626
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 516 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 575
Query: 462 agtg 465
||||
Sbjct: 576 agtg 579
>gb|BQ665188.1|BQ665188 HX02H16u HX Hordeum vulgare subsp. vulgare cDNA clone HX02H16
3-PRIME, mRNA sequence
Length = 577
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 484 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 543
Query: 462 agtg 465
||||
Sbjct: 544 agtg 547
>gb|BU987042.1|BU987042 HF13K08r HF Hordeum vulgare subsp. vulgare cDNA clone HF13K08
5-PRIME, mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 80 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 21
Query: 462 agtg 465
||||
Sbjct: 20 agtg 17
>gb|CA014730.1|CA014730 HT12D03r HT Hordeum vulgare subsp. vulgare cDNA clone HT12D03
5-PRIME, mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 145 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 86
Query: 462 agtg 465
||||
Sbjct: 85 agtg 82
>gb|CB860120.1|CB860120 HI12L17w HI Hordeum vulgare subsp. vulgare cDNA clone HI12L17
3-PRIME, mRNA sequence
Length = 652
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 542 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 601
Query: 462 agtg 465
||||
Sbjct: 602 agtg 605
>gb|CB881802.1|CB881802 HM10O18w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O18
3-PRIME, mRNA sequence
Length = 595
Score = 48.1 bits (24), Expect = 6e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 492 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 551
Query: 462 agtg 465
||||
Sbjct: 552 agtg 555
>gb|BI948576.1|BI948576 HVSMEl0010C03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010C03f, mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.002
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| ||||||| || |||||||||||||| ||||| || ||||| || || |||
Sbjct: 63 acagcttcatcgttagttacaacatcccacagcccgtcactagcgaggatgaggaattcg 4
Query: 462 agt 464
|||
Sbjct: 3 agt 1
>gb|BE216058.3|BE216058 HV_CEb0009E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E12f, mRNA sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 549 gcaagtacaccaccaacgcgccatgttcctgcccacatcacaa 591
||||||||||||||||| | ||| ||||| |||||||| ||||
Sbjct: 523 gcaagtacaccaccaaccctccaagttccagcccacataacaa 481
>gb|BE603237.2|BE603237 HVSMEh0102L08f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0102L08f, mRNA sequence
Length = 531
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 203 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 144
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 143 taaacttaccattctcactgaacccgccgccactgac 107
>gb|BM369249.2|BM369249 EBem07_SQ003_A17_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_A17 5', mRNA sequence
Length = 233
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 187 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 128
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 127 taaacttaccattctcactgaacccgccgccactgac 91
>gb|BM369492.2|BM369492 EBem07_SQ003_L23_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_L23 5', mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 267 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 208
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 207 taaacttaccattctcactgaacccgccgccactgac 171
>gb|BM368454.2|BM368454 EBem08_SQ002_F06_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_F06 5', mRNA sequence
Length = 468
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 187 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 128
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 127 taaacttaccattctcactgaacccgccgccactgac 91
>gb|CA001846.1|CA001846 HS05M05r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M05
5-PRIME, mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 203 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 144
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 143 taaacttaccattctcactgaacccgccgccactgac 107
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| ||||||||||| || || ||||| ||||| || || | ||||| ||| ||
Sbjct: 609 cgccatgtacctgcccacatgacgaagcctccggcatcctctatcctctgcctctcgtct 550
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcat 666
|| || |||||||| || ||| |||| || || |||||||
Sbjct: 549 gtctggtcaggcttatggtcccttgacaccgctatagcat 510
>gb|CA007409.1|CA007409 HU07O02r HU Hordeum vulgare subsp. vulgare cDNA clone HU07O02
5-PRIME, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 245 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 186
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 185 taaacttaccattctcactgaacccgccgccactgac 149
>gb|CA013229.1|CA013229 HT07M09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07M09
5-PRIME, mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 262 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 203
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 202 taaacttaccattctcactgaacccgccgccactgac 166
>gb|CV056271.1|CV056271 BNEL15H10 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL15H10 5' similar to protein phosphatase
2C, mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.037
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 970 ttgtctcatagaagtcttccatggatgcccttttaccaggggagcttgcatagccatagc 1029
||||||| | |||||| |||||||| | ||||| || || |||| ||||| |||||||
Sbjct: 154 ttgtctcgtggaagtcctccatggaagatcttttccctaggcagctcgcataaccatagc 95
Query: 1030 taaatctaccattctggctgaggccgccgccgctgac 1066
|||| ||||||||| |||| |||||||| |||||
Sbjct: 94 taaacttaccattctcactgaacccgccgccactgac 58
Score = 40.1 bits (20), Expect = 0.15
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| ||||||||||| || || ||||| ||||| || || | ||||| ||| ||
Sbjct: 560 cgccatgtacctgcccacatgacgaagcctccggcatcctctatcctctgcctctcgtct 501
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcat 666
|| || |||||||| || ||| |||| || || |||||||
Sbjct: 500 gtctggtcaggcttatggtcccttgacaccgctatagcat 461
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,840
Number of Sequences: 312970
Number of extensions: 125840
Number of successful extensions: 33405
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 33279
Number of HSP's gapped (non-prelim): 115
length of query: 1074
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1055
effective length of database: 169,188,109
effective search space: 178493454995
effective search space used: 178493454995
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)