BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 281 3e-074
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA li... 121 6e-026
gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, dro... 100 2e-019
gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA li... 92 5e-017
gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA li... 88 8e-016
gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA li... 70 2e-010
gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA li... 70 2e-010
gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA li... 66 3e-009
gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subs... 60 2e-007
gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. v... 60 2e-007
gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. v... 60 2e-007
gb|CA005756.1|CA005756 HU08O17u HU Hordeum vulgare subsp. v... 60 2e-007
gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. v... 60 2e-007
gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. v... 60 2e-007
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 50 2e-004
gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. v... 50 2e-004
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 48 7e-004
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 48 7e-004
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 48 7e-004
gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. v... 48 7e-004
gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. v... 48 7e-004
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 48 7e-004
gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. v... 48 7e-004
gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed D... 48 7e-004
gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots... 44 0.010
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 42 0.041
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 42 0.041
gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. v... 42 0.041
gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. v... 42 0.041
gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgar... 42 0.041
gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green... 40 0.16
gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare s... 40 0.16
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 281 bits (142), Expect = 3e-074
Identities = 456/560 (81%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 12 gatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaatccagtt 71
||||| ||||| |||||| |||| |||| |||||||||||||||||| ||||| || |||
Sbjct: 4 gatatataccggtcagattctgagtggaggatcattttacttaggtatttcaacccggtt 63
Query: 72 ggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaatcttatg 131
|| ||||| || |||||||| ||||| || |||||||| ||| |||| ||||| ||||||
Sbjct: 64 ggggctcaccccagtggataccttggtgaagacccacgtggagttccaaacaaccttatg 123
Query: 132 ccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttaggaaatgac 191
|||| |||||||||||||| ||||| |||||||| | ||||| | || |||||| ||
Sbjct: 124 cccttcgttcagcaagttgctgttgggaggaggccgtcagtgacaatctttggaaataac 183
Query: 192 tatgcaacaagagacgggactggggtccgagattacatccatgtggttgaccttgctgac 251
|||||||| | ||| ||||||||||| |||||||| || |||||| |||| ||||||||
Sbjct: 184 tatgcaactaaagatgggactggggtacgagattatattcatgtgcttgatcttgctgag 243
Query: 252 ggacatattgctgcattgcagaagctttttgaga---actctagcatagggtgtgaagcg 308
|| |||||||||||| | | |||||||||||| | |||| |||||| |||||| |
Sbjct: 244 gggcatattgctgcactacggaagctttttgatagttcgtctaacataggatgtgaacca 303
Query: 309 tacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgagaag 368
|||||||||||||| |||| ||| || || ||| ||||||| || || ||||| ||||||
Sbjct: 304 tacaaccttggaactggaaaagggacgtcagtgttggagatagtaaatgcattcgagaag 363
Query: 369 gcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagatt 428
|||||||| |||||||| || ||| | | ||| | | ||||| ||||| || ||||||
Sbjct: 364 gcttctggaaagaaaatcccgctggtcgtcggtcagcgccgccctggtgacgcggagatt 423
Query: 429 ctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatacggtatt 488
|| ||| ||| ||| |||||||||||| || || |||||||||||||| || || ||
Sbjct: 424 ctctttgcaggaactggtaaagcagagagagaactcaactggaaagcaaagtatggcatc 483
Query: 489 gaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatca 548
||||||||| | ||||| ||||||||||| |||||||||||||| || || || |||
Sbjct: 484 acggagatgtgcagggaccagtggaactgggctagcaagaacccttacgggtacgggtca 543
Query: 549 cctgactctatcaagcagaa 568
|| ||||| | |||||||||
Sbjct: 544 cccgactcgaccaagcagaa 563
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 238 bits (120), Expect = 3e-061
Identities = 420/518 (81%), Gaps = 4/518 (0%)
Strand = Plus / Plus
Query: 6 tgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttcaat 65
||||| ||||| ||||| |||||| |||| |||| ||| |||||||||||||| |||||
Sbjct: 23 tgccgtgatatataccggtcagattctgagtggaggat-attttacttaggtatttcaac 81
Query: 66 ccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaacaat 125
|| ||||| ||||| || |||||||| ||||| || |||||||| ||| |||| |||||
Sbjct: 82 ccggttggggctcaccccagtggataccttggtgaagacccacgtggagttccaaacaac 141
Query: 126 cttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttttagga 185
|||||||||| |||||||||||||| ||||| |||||||| | ||||| | || |||
Sbjct: 142 cttatgcccttcgttcagcaagttgctgttgggaggaggccgtcagtgacaatctttgga 201
Query: 186 aatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgacctt 245
||| |||||||||| | ||| ||||||||||| |||||||| || |||||| |||| |||
Sbjct: 202 aataactatgcaactaaagatgggactggggtacgagattatattcatgtgcttgatctt 261
Query: 246 gctgacggacatattgctgcattgcagaagctttttgaga---actctagcatagggtgt 302
||||| || |||||||||||| | | |||||||||||| | |||| |||||| |||
Sbjct: 262 gctgaggggcatattgctgcactacggaagctttttgatagttcgtctaacataggatgt 321
Query: 303 gaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcattt 362
||| | |||||||||||||| |||| ||| || || ||| ||||||| || || |||||
Sbjct: 322 gaaccatacaaccttggaactggaaaagggacgtcagtgttggagatagtaaatgcattc 381
Query: 363 gagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgca 422
|||||||||||||| |||||||| || ||| | | ||| | | ||||| ||||| ||
Sbjct: 382 gagaaggcttctggaaagaaaatcccgctggtcgtcggtcagcgccgccctggtgacgcg 441
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||| ||| ||| |||||||||||| || || |||||||||||||| ||
Sbjct: 442 gagattctctttgcaggaactggtaaagcagagagagaactcaactggaaagcaaagtat 501
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggc 520
|| || ||||||||| | ||||| |||||||||||
Sbjct: 502 ggcatcacggagatgtgcagggaccagtggaactgggc 539
>gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 5', mRNA sequence
Length = 588
Score = 121 bits (61), Expect = 6e-026
Identities = 223/277 (80%)
Strand = Plus / Plus
Query: 292 gcatagggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattg 351
||||||| |||||| | |||||||||||||| |||| ||| || || ||| ||||||| |
Sbjct: 1 gcataggatgtgaaccatacaaccttggaactggaaaagggacgtcagtgttggagatag 60
Query: 352 ttaaagcatttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcc 411
| || ||||| |||||||||||||| |||||||| || ||| | | ||| | | ||||
Sbjct: 61 taaatgcattcgagaaggcttctggaaagaaaatcccgctggtcgtcggtcagcgccgcc 120
Query: 412 caggtgatgcagagattctgttttcagagactactaaagcagagagggagcttaactgga 471
| ||||| || |||||||| ||| ||| ||| |||||||||||| || || |||||||
Sbjct: 121 ctggtgacgccgagattctctttgcaggaactggtaaagcagagagagaactcaactgga 180
Query: 472 aagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacc 531
||||||| || || || ||||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 181 aagcaaagtatggcatcacggagatgtgcagggaccagtggaactgggctagcaagaacc 240
Query: 532 cttatggctatggatcacctgactctatcaagcagaa 568
|||| || || || ||||| ||||| | |||||||||
Sbjct: 241 cttacgggtacgggtcacccgactcgaccaagcagaa 277
>gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C17 5', mRNA sequence
Length = 639
Score = 99.6 bits (50), Expect = 2e-019
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 315 cttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgagaaggcttct 374
|||||||| |||| ||| || || ||| ||||||| || || ||||| ||||||||||||
Sbjct: 1 cttggaactggaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttct 60
Query: 375 gggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttt 434
|| |||||||| || ||| | | ||| | | ||||| ||||| || |||||||| |||
Sbjct: 61 ggaaagaaaatcccgctggtcgtcggtcagcgccgccctggtgacgcggagattctcttt 120
Query: 435 tcagagactactaaagcagagagggagcttaactggaaagcaaaatacggtattgaagag 494
||| ||| |||||||||||| || || |||||||||||||| || || || |||
Sbjct: 121 gcaggaactggtaaagcagagagagaactcaactggaaagcaaagtatggcatcacggag 180
Query: 495 atgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatcacctgac 554
|||||| | ||||| ||||||||||| |||||||||||||| || || || ||||| |||
Sbjct: 181 atgtgcagggaccagtggaactgggctagcaagaacccttacgggtacgggtcacccgac 240
Query: 555 tctatcaagcagaa 568
|| | |||||||||
Sbjct: 241 tcgaccaagcagaa 254
>gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 3', mRNA sequence
Length = 667
Score = 91.7 bits (46), Expect = 5e-017
Identities = 181/226 (80%)
Strand = Plus / Minus
Query: 343 tggagattgttaaagcatttgagaaggcttctgggaagaaaatacctctgatttttggtg 402
||||||| || || ||||| |||||||||||||| |||||||| || ||| | | |||
Sbjct: 649 tggagatagtaaatgcattcgagaaggcttctggaaagaaaatcccgctggtcgtcggtc 590
Query: 403 aaaggcgcccaggtgatgcagagattctgttttcagagactactaaagcagagagggagc 462
| | ||||| ||||| || |||||||| ||| ||| ||| |||||||||||| || |
Sbjct: 589 agcgccgccctggtgacgcggagattctctttgcaggaactggtaaagcagagagagaac 530
Query: 463 ttaactggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggcca 522
| |||||||||||||| || || || ||||||||| | ||||| ||||||||||| |
Sbjct: 529 tcaactggaaagcaaagtatggcatcacggagatgtgcagggaccagtggaactgggcta 470
Query: 523 gcaagaacccttatggctatggatcacctgactctatcaagcagaa 568
||||||||||||| || || || ||||| ||||| | |||||||||
Sbjct: 469 gcaagaacccttacgggtacgggtcacccgactcgaccaagcagaa 424
>gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 3', mRNA sequence
Length = 579
Score = 87.7 bits (44), Expect = 8e-016
Identities = 170/212 (80%)
Strand = Plus / Minus
Query: 357 gcatttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggt 416
||||| |||||||||||||| |||||||| || ||| | | ||| | | ||||| |||
Sbjct: 557 gcattcgagaaggcttctggaaagaaaatcccgctggtcgtcggtcagcgccgccctggt 498
Query: 417 gatgcagagattctgttttcagagactactaaagcagagagggagcttaactggaaagca 476
|| || |||||||| ||| ||| ||| |||||||||||| || || ||||||||||||
Sbjct: 497 gacgccgagattctctttgcaggaactggtaaagcagagagagaactcaactggaaagca 438
Query: 477 aaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttat 536
|| || || || ||||||||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 437 aagtatggcatcacggagatgtgcagggaccagtggaactgggctagcaagaacccttac 378
Query: 537 ggctatggatcacctgactctatcaagcagaa 568
|| || || ||||| ||||| | |||||||||
Sbjct: 377 gggtacgggtcacccgactcgaccaagcagaa 346
>gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 3', mRNA sequence
Length = 468
Score = 69.9 bits (35), Expect = 2e-010
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 450 gcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgaccaa 509
|||||||| || || |||||||||||||| || || || ||||||||| | |||||
Sbjct: 468 gcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgcagggaccag 409
Query: 510 tggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcagaa 568
||||||||||| |||||||||||||| || || || ||||| ||||| | |||||||||
Sbjct: 408 tggaactgggctagcaagaacccttacgggtacgggtcacccgactcgaccaagcagaa 350
>gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 3', mRNA sequence
Length = 469
Score = 69.9 bits (35), Expect = 2e-010
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 450 gcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgaccaa 509
|||||||| || || |||||||||||||| || || || ||||||||| | |||||
Sbjct: 469 gcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgcagggaccag 410
Query: 510 tggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcagaa 568
||||||||||| |||||||||||||| || || || ||||| ||||| | |||||||||
Sbjct: 409 tggaactgggctagcaagaacccttacgggtacgggtcacccgactcgaccaagcagaa 351
>gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 5', mRNA sequence
Length = 488
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatcacct 551
||||||||| | ||||| ||||||||||| |||||||||||||| || || || |||||
Sbjct: 29 gagatgtgcagggaccagtggaactgggctagcaagaacccttacgggtacgggtcaccc 88
Query: 552 gactctatcaagcagaa 568
||||| | |||||||||
Sbjct: 89 gactcgaccaagcagaa 105
>gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 5', mRNA sequence
Length = 492
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatcacct 551
||||||||| | ||||| ||||||||||| |||||||||||||| || || || |||||
Sbjct: 33 gagatgtgcagggaccagtggaactgggctagcaagaacccttacgggtacgggtcaccc 92
Query: 552 gactctatcaagcagaa 568
||||| | |||||||||
Sbjct: 93 gactcgaccaagcagaa 109
>gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070B09F1, mRNA sequence
Length = 360
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 208 gagatgtgcagggaccagtggaactgggccaggaagaacccctatggcta 257
>gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. vulgare cDNA clone HS09J09
3-PRIME, mRNA sequence
Length = 549
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 275 gagatgtgcagggaccagtggaactgggccaggaagaacccgtatggcta 226
>gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. vulgare cDNA clone HS17O15
3-PRIME, mRNA sequence
Length = 550
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 426 gagatgtgcagggaccagtggaactgggccaggaagaacccgtatggcta 377
>gb|CA005756.1|CA005756 HU08O17u HU Hordeum vulgare subsp. vulgare cDNA clone HU08O17
3-PRIME, mRNA sequence
Length = 350
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 284 gagatgtgcagggaccagtggaactgggccaggaagaacccgtatggcta 235
>gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K20
3-PRIME, mRNA sequence
Length = 356
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 233 gagatgtgcagggaccagtggaactgggccaggaagaacccgtatggcta 184
>gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07F09
5-PRIME, mRNA sequence
Length = 637
Score = 60.0 bits (30), Expect = 2e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 496 gagatgtgcagggaccagtggaactgggccaggaagaacccgtatggcta 545
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtggatatctt 95
||||||||||| | || ||||||||||| |||||||| ||||| || ||||| || |
Sbjct: 199 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtggctacatc 258
Query: 96 ggcgaggacccacgaggaattcccaacaatcttatgccctatgttcagcaagt 148
|| || ||||| | ||| | |||||||| || ||||||||||| ||||||||
Sbjct: 259 ggggaagacccccttggagtccccaacaacctgatgccctatgtccagcaagt 311
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 388 tacatccatgttgttgacctggctgacgg 416
>gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. vulgare cDNA clone HB31F04
5-PRIME, mRNA sequence
Length = 501
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtggatatctt 95
||||||||||| | || ||||||||||| |||||||| ||||| || ||||| || |
Sbjct: 262 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtggctacatc 321
Query: 96 ggcgaggacccacgaggaattcccaacaatcttatgccctatgttcagcaagt 148
|| || ||||| | ||| | |||||||| || ||||||||||| ||||||||
Sbjct: 322 ggggaagacccccttggagtccccaacaacctgatgccctatgtccagcaagt 374
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 451 tacatccatgttgttgacctggctgacgg 479
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 391 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 336
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 661 tacatccatgttgttgacctggctgacgg 633
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 402 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 457
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 132 tacatccatgttgttgacctggctgacgg 160
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 24 cccaacaacctgatgccctatgtccagcaagt 55
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 396 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 451
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 126 tacatccatgttgttgacctggctgacgg 154
>gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11O08
3-PRIME, mRNA sequence
Length = 477
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 408 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 353
>gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C10
3-PRIME, mRNA sequence
Length = 503
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 404 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 349
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 489 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 544
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 219 tacatccatgttgttgacctggctgacgg 247
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 111 cccaacaacctgatgccctatgtccagcaagt 142
>gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B01
5-PRIME, mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 247 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 302
>gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03cd03, mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggatc 547
||||||||| | |||| ||||||||||| ||||||||||| || ||||| |||||
Sbjct: 419 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacggatc 364
>gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D01u 3', mRNA sequence
Length = 468
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 492 gagatgtgccgcgaccaatggaactgggccagcaagaacccttatggcta 541
||||||||| | |||| ||||||||||| ||||||||||| || |||||
Sbjct: 432 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggcta 383
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 332 tacatccatgttgttgacctggctgacgg 360
Score = 42.1 bits (21), Expect = 0.041
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||||||||| | || ||||||||||| |||||||| ||||| || |||||
Sbjct: 142 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtgg 194
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 224 cccaacaacctgatgccctatgtccagcaagt 255
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 225 tacatccatgtggttgaccttgctgacgg 253
||||||||||| |||||||| ||||||||
Sbjct: 175 tacatccatgttgttgacctggctgacgg 203
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 67 cccaacaacctgatgccctatgtccagcaagt 98
>gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. vulgare cDNA clone HT07H24
5-PRIME, mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.041
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||||||||| | || ||||||||||| |||||||| ||||| || |||||
Sbjct: 514 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtgg 566
>gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H22
5-PRIME, mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.041
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||||||||| | || ||||||||||| |||||||| ||||| || |||||
Sbjct: 582 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtgg 634
>gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L124 5-PRIME, mRNA sequence
Length = 791
Score = 42.1 bits (21), Expect = 0.041
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 36 tggaagatcattttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||||||||| | || ||||||||||| |||||||| ||||| || |||||
Sbjct: 711 tggaagatcatactgctgaggtacttcaacccagttggcgctcacccgagtgg 763
>gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008B04f, mRNA sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 79 cccaacaacctgatgccctatgtccagcaagt 110
>gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D12_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 117 cccaacaatcttatgccctatgttcagcaagt 148
|||||||| || ||||||||||| ||||||||
Sbjct: 783 cccaacaacctgatgccctatgtccagcaagt 814
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,304
Number of Sequences: 312970
Number of extensions: 84304
Number of successful extensions: 22560
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22479
Number of HSP's gapped (non-prelim): 71
length of query: 1175
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1156
effective length of database: 169,188,109
effective search space: 195581454004
effective search space used: 195581454004
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)