BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA li... 319 8e-086
gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare s... 305 1e-081
gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA li... 299 7e-080
gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA li... 278 3e-073
gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike... 272 2e-071
gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, n... 256 1e-066
gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA li... 234 4e-060
gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA li... 224 3e-057
gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA li... 224 3e-057
gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA li... 224 3e-057
gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA li... 224 3e-057
gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedl... 210 5e-053
gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. v... 210 5e-053
gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA li... 206 8e-052
gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA li... 161 4e-038
gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA li... 141 4e-032
gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. v... 125 2e-027
gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedl... 100 1e-019
gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. v... 94 8e-018
gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. v... 94 8e-018
gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. v... 94 8e-018
gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. v... 92 3e-017
gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, n... 84 8e-015
gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hyd... 80 1e-013
gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subs... 80 1e-013
gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiol... 74 8e-012
gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiol... 66 2e-009
gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiol... 66 2e-009
gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. v... 66 2e-009
gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA li... 64 7e-009
gb|BE420972.1|BE420972 HWM004.E01 ITEC HWM Barley Leaf Libr... 52 3e-005
gb|BE437927.1|BE437927 SFR009.A04F990512 ITEC SFR Barley Le... 52 3e-005
gb|BI951143.1|BI951143 HVSMEl0024K06f Hordeum vulgare spike... 50 1e-004
gb|BF622269.2|BF622269 HVSMEa0002G17f Hordeum vulgare seedl... 38 0.42
>gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 5', mRNA sequence
Length = 712
Score = 319 bits (161), Expect = 8e-086
Identities = 485/593 (81%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 632 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 573
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 572 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 513
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 512 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 453
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 452 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 393
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 392 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 333
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 332 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 273
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 272 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 213
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttcacgaag 659
||||||||||||||||||||||| || || ||||||||||| || |||||||| || |||
Sbjct: 212 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtttacaaag 153
Query: 660 agtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtgaggaaa 719
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 152 agcggtgcataacttgccatatgaacaatatcactgttcttctccagcccagtaaggaag 93
Query: 720 gcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctcca 772
||||| || |||| ||| ||||||| || |||||||| || ||| |||||||
Sbjct: 92 gcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagttctcca 40
>gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111G07_T3.ab1 similar to (AC011708) putative
alpha-L-arabinofuranosidase [Arabidopsis thaliana], mRNA
sequence
Length = 924
Score = 305 bits (154), Expect = 1e-081
Identities = 448/546 (82%)
Strand = Plus / Minus
Query: 227 gaaggagtgaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggctttt 286
||||||||| | ||| ||||||||||||||||| ||||||||||| || ||| ||| |
Sbjct: 731 gaaggagtgggcagcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgt 672
Query: 287 caccggcgcaaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgt 346
||| ||| | |||||| | ||||||||||| || || || ||| | || |||| |||||
Sbjct: 671 cacgggcacgaccttggttgggttactgaaagaattttcatcctttacattgctggacgt 612
Query: 347 gaggacggtggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagac 406
||| || || ||| |||| ||||||||||||| ||| ||| ||||||| | ||||
Sbjct: 611 gagaacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagat 552
Query: 407 cgtgaggctaacggggtccgacccgaagttcacgaccttcactctcaggaagctattctc 466
|||||||| |||| |||||||||||||||||| | ||| |||||||||||| ||||| |
Sbjct: 551 tgtgaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattccc 492
Query: 467 tgcatcctgccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatatt 526
| ||||||||| ||||| ||||| || || || |||| ||||| | ||||||||| |
Sbjct: 491 ggaatcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgt 432
Query: 527 aaccggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctagg 586
|| ||||| |||||||| || || || |||||||||| | ||||||||||||| |||||
Sbjct: 431 aattggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactagg 372
Query: 587 agttccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcatt 646
|||||| || || ||||||||||||||||||||||| || || ||||||||||| || ||
Sbjct: 371 agttccgtattgttgccaggagttgaagacgatagcatctggattccacgtttgatcgtt 312
Query: 647 gtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccag 706
|||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 311 gtcgtttacaaagagcggtgcataacttgccatatgaacaatatcactgttcttctccag 252
Query: 707 accagtgaggaaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcact 766
||||| ||||| ||||| || |||| ||| ||| ||| || |||||||| || ||| |
Sbjct: 251 cccagtaaggaaggcagcctctgccagtgaaccaataaggcttcctctacctgcatcagt 192
Query: 767 tctcca 772
||||||
Sbjct: 191 tctcca 186
>gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 3', mRNA sequence
Length = 704
Score = 299 bits (151), Expect = 7e-080
Identities = 442/539 (82%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 164 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 223
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 224 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 283
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 284 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 343
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 344 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 403
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 404 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 463
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 464 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 523
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 524 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 583
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttcacgaag 659
||||||||||||||||||||||| || || ||||||||||| || |||||||| || |||
Sbjct: 584 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtttacaaag 643
Query: 660 agtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtgaggaa 718
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 644 agcggtgcataacttgccatatgaacaatatcactgttcttctccagcccagtaaggaa 702
>gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 3', mRNA sequence
Length = 715
Score = 278 bits (140), Expect = 3e-073
Identities = 427/523 (81%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 190 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 249
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 250 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 309
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 310 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 369
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 370 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 429
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 430 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 489
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 490 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 549
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 550 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 609
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttcacgaag 659
||||||||||||||||||||||| || || ||||||||||| || |||||||| || |||
Sbjct: 610 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtttacaaag 669
Query: 660 agtggtgcgtaacttgccatctgaacaatatcactgttcttct 702
|| ||||| ||||||||||| ||||||||||||||| ||||||
Sbjct: 670 agcggtgcataacttgccatatgaacaatatcactgntcttct 712
>gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010F06f, mRNA sequence
Length = 817
Score = 272 bits (137), Expect = 2e-071
Identities = 308/365 (84%)
Strand = Plus / Minus
Query: 408 gtgaggctaacggggtccgacccgaagttcacgaccttcactctcaggaagctattctct 467
|||||||| |||| |||||||||||||||||| |||| |||||||||||| ||||| |
Sbjct: 533 gtgaggctcacggtgtccgacccgaagttcacatcctttactctcaggaagttattcccg 474
Query: 468 gcatcctgccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatatta 527
| ||||||||| ||||| ||||| || || || |||| ||||| | ||||||||| ||
Sbjct: 473 gaatcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgta 414
Query: 528 accggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctagga 587
| ||||| |||||||| || || || |||||||||| | ||||||||||||| ||||||
Sbjct: 413 attggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactagga 354
Query: 588 gttccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattg 647
||||| || || ||||||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 353 gttccgtattgttgccaggagttgaagacgatagcatctggattccacgtttgatcgttg 294
Query: 648 tcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccaga 707
||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 293 tcgtttacaaagagcggtgcataacttgccatatgaacaatatcactgttcttctccagc 234
Query: 708 ccagtgaggaaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcactt 767
||||| ||||| ||||| || |||| ||| ||||||| || |||||||| || ||| ||
Sbjct: 233 ccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagtt 174
Query: 768 ctcca 772
|||||
Sbjct: 173 ctcca 169
>gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_K02 5', mRNA sequence
Length = 479
Score = 256 bits (129), Expect = 1e-066
Identities = 372/453 (82%)
Strand = Plus / Minus
Query: 286 tcaccggcgcaaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacg 345
|||||||| |||||||||| |||||| ||| |||||||||||||| || |||||| |
Sbjct: 453 tcaccggcacaaccttgtttgggttagcgaaagagttctcgtccattacaccgccagatg 394
Query: 346 tgaggacggtggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggaga 405
|||| ||||| ||||| ||||| ||||| |||| |||| || |||||| ||| ||||
Sbjct: 393 tgagaacggtcgcggtggatccgagcgcattgatgctgccctggagcccagtcgccgaga 334
Query: 406 ccgtgaggctaacggggtccgacccgaagttcacgaccttcactctcaggaagctattct 465
||||||| |||| || | |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 333 tggtgaggcccacggcatctggcccgaaattcacaatcttcactctcaggaagctgttct 274
Query: 466 ctgcatcctgccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatat 525
| |||| ||||||||||||||||| || |||||| ||| ||| | | ||||||| |
Sbjct: 273 cgtcatcatgccacgtgatcgcagatgctgccagcaaaccagagcagcttgaactgagac 214
Query: 526 taaccggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctag 585
| | ||||||| | | || |||||||| || ||||||| ||||||||||||||| || |
Sbjct: 213 tgatgggatggaccgtagcaccgcttgattctcggaaaagcgtctgcatccagtaactgg 154
Query: 586 gagttccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcat 645
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct: 153 gagttccgtattgctgccaggagttgaagacgatagcgtctgggttccacgtgcggtcgt 94
Query: 646 tgtcgttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctcca 705
| ||||| | |||||| ||||| || |||||||||||||||| |||||| ||||||||||
Sbjct: 93 tatcgtttatgaagagcggtgcatagcttgccatctgaacaacatcactattcttctcca 34
Query: 706 gaccagtgaggaaagcagcttcagccaacgaag 738
| ||||| |||||||| || || ||||| ||||
Sbjct: 33 gcccagtaaggaaagcggcctctgccaatgaag 1
>gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 5', mRNA sequence
Length = 591
Score = 234 bits (118), Expect = 4e-060
Identities = 274/326 (84%)
Strand = Plus / Minus
Query: 447 actctcaggaagctattctctgcatcctgccacgtgatcgcagacgcggccagcgaactc 506
|||||||||||| ||||| | | ||||||||| ||||| ||||| || || || ||||
Sbjct: 590 actctcaggaagttattcccggaatcctgccaggtgatagcagatgctgctagagaacca 531
Query: 507 gagtaccgggaactgatattaaccggatggatcatggcgccgcttgactcgcggaaaatc 566
||||| | ||||||||| ||| ||||| |||||||| || || || |||||||||| |
Sbjct: 530 gagtagctggaactgattgtaattggatgaatcatggcaccactagattcgcggaaaaac 471
Query: 567 gtctgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtcc 626
||||||||||||| ||||||||||| || || ||||||||||||||||||||||| ||
Sbjct: 470 ttctgcatccagtaactaggagttccgtattgttgccaggagttgaagacgatagcatct 411
Query: 627 gggttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaaca 686
|| ||||||||||| || |||||||| || ||||| ||||| ||||||||||| ||||||
Sbjct: 410 ggattccacgtttgatcgttgtcgtttacaaagagcggtgcataacttgccatatgaaca 351
Query: 687 atatcactgttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaaga 746
|||||||||||||||||||| ||||| ||||| ||||| || |||| ||| |||||||
Sbjct: 350 atatcactgttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaagg 291
Query: 747 ctgcctctacccgcgtcacttctcca 772
|| |||||||| || ||| |||||||
Sbjct: 290 cttcctctacctgcatcagttctcca 265
>gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 3', mRNA sequence
Length = 656
Score = 224 bits (113), Expect = 3e-057
Identities = 383/473 (80%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 183 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 242
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 243 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 302
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 303 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 362
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 363 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 422
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 423 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 482
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 483 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 542
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 543 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 602
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgtt 652
||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 603 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtt 655
>gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 3', mRNA sequence
Length = 642
Score = 224 bits (113), Expect = 3e-057
Identities = 383/473 (80%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 169 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 228
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 229 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 288
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 289 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 348
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 349 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 408
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 409 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 468
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 469 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 528
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 529 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 588
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgtt 652
||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 589 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtt 641
>gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 3', mRNA sequence
Length = 646
Score = 224 bits (113), Expect = 3e-057
Identities = 383/473 (80%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 173 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 232
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 233 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 292
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 293 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 352
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 353 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 412
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 413 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 472
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 473 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 532
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 533 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 592
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgtt 652
||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 593 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtt 645
>gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 3', mRNA sequence
Length = 654
Score = 224 bits (113), Expect = 3e-057
Identities = 383/473 (80%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 182 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 241
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 242 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 301
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 302 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 361
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 362 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 421
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 422 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 481
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 482 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 541
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatagtgc 599
||||| || || || |||||||||| | ||||||||||||| ||||||||||| || ||
Sbjct: 542 atggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgt 601
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgtt 652
||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 602 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtt 654
>gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020B07f, mRNA sequence
Length = 832
Score = 210 bits (106), Expect = 5e-053
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
||||| |||||||| || || || |||||||||| | ||||||||||||| |||||||||
Sbjct: 474 ggatgaatcatggcccccctagattcgcggaaaaacttctgcatccagtaactaggagtt 415
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
|| || || ||||||||||||||||||||||| || || ||||||||||| || ||||||
Sbjct: 414 ccgtattgttgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcg 355
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 354 tttacaaagagcggtgcataacttgccatatgaacaatatcactgttcttctccagccca 295
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctc 770
|| ||||| ||||| || |||| ||| ||||||| || |||||||| || ||| |||||
Sbjct: 294 gtaaggaaggcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagttctc 235
Query: 771 ca 772
||
Sbjct: 234 ca 233
>gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF17D19
5-PRIME, mRNA sequence
Length = 638
Score = 210 bits (106), Expect = 5e-053
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
||||| |||||||| || || || |||||||||| | ||||||||||||| |||||||||
Sbjct: 584 ggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagtt 525
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
|| || || ||||||||||||||||||||||| || || ||||||||||| || ||||||
Sbjct: 524 ccgtattgttgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcg 465
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 464 tttacaaagagcggtgcataacttgccatatgaacaatatcactgttcttctccagccca 405
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctc 770
|| ||||| ||||| || |||| ||| ||||||| || |||||||| || ||| |||||
Sbjct: 404 gtaaggaaggcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagttctc 345
Query: 771 ca 772
||
Sbjct: 344 ca 343
>gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 5', mRNA sequence
Length = 639
Score = 206 bits (104), Expect = 8e-052
Identities = 203/236 (86%)
Strand = Plus / Minus
Query: 537 atcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagttccatag 596
|||||||| || || || |||||||||| | ||||||||||||| ||||||||||| ||
Sbjct: 635 atcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtat 576
Query: 597 tgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttcacg 656
|| ||||||||||||||||||||||| || || ||||||||||| || |||||||| ||
Sbjct: 575 tgttgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtttaca 516
Query: 657 aagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtgagg 716
||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 515 aagagcggtgcataacttgccatatgaacaatatcactgttcttctccagcccagtaagg 456
Query: 717 aaagcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctcca 772
|| ||||| || |||| ||| ||||||| || |||||||| || ||| |||||||
Sbjct: 455 aaggcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagttctcca 400
>gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 5', mRNA sequence
Length = 585
Score = 161 bits (81), Expect = 4e-038
Identities = 150/173 (86%)
Strand = Plus / Minus
Query: 600 tgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttcacgaag 659
||||||||||||||||||||||| || || ||||||||||| || |||||||| || |||
Sbjct: 576 tgccaggagttgaagacgatagcatctggattccacgtttgatcgttgtcgtttacaaag 517
Query: 660 agtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtgaggaaa 719
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 516 agcggtgcataacttgccatatgaacaatatcactgttcttctccagcccagtaaggaag 457
Query: 720 gcagcttcagccaacgaagcaagaagactgcctctacccgcgtcacttctcca 772
||||| || |||| ||| ||||||| || |||||||| || ||| |||||||
Sbjct: 456 gcagcctctgccagtgaaccaagaaggcttcctctacctgcatcagttctcca 404
>gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24j13 3', mRNA sequence
Length = 561
Score = 141 bits (71), Expect = 4e-032
Identities = 314/395 (79%)
Strand = Plus / Plus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 164 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 223
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 224 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 283
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 284 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 343
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 344 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 403
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 404 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 463
Query: 480 gtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccggatggatc 539
||||| ||||| || || || |||| ||||| | ||||||||| ||| ||||| |||
Sbjct: 464 gtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatc 523
Query: 540 atggcgccgcttgactcgcggaaaatcgtctgcat 574
||||| || || || |||||||||| | |||||||
Sbjct: 524 atggcaccactagattcgcggaaaaacttctgcat 558
>gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19F12
5-PRIME, mRNA sequence
Length = 556
Score = 125 bits (63), Expect = 2e-027
Identities = 249/311 (80%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 366 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 307
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 306 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 247
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 246 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 187
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
|||| ||||||||||||| ||| ||| ||||||| | |||| |||||||| |||
Sbjct: 186 tttgaccccagcgcgttgatgctagcctggagcccggacacagagattgtgaggctcacg 127
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
| |||||||||||||||||| | ||| |||||||||||| ||||| | | |||||||||
Sbjct: 126 gtgtccgacccgaagttcacaatctttactctcaggaagttattcccggaatcctgccag 67
Query: 480 gtgatcgcaga 490
||||| |||||
Sbjct: 66 gtgatagcaga 56
>gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015O10f, mRNA sequence
Length = 762
Score = 99.6 bits (50), Expect = 1e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
||||| |||||||| || || || |||||||||| | | ||||||||||| |||||||||
Sbjct: 213 ggatgaatcatggcaccactagattcgcggaaaaacttttgcatccagtaactaggagtt 154
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
|| || || ||||||||||||||||||| ||| || || ||||||||||| || ||||||
Sbjct: 153 ccgtattgttgccaggagttgaagacgacagcatctggattccacgtttgatcgttgtcg 94
Query: 651 tt 652
||
Sbjct: 93 tt 92
>gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49P14
5-PRIME, mRNA sequence
Length = 597
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||| || || ||||| || ||||||| ||||||||||||||||||||||||
Sbjct: 545 ggatggatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagtt 486
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
||||| || ||||||||||||||||| || || || ||| ||||| |||| || ||
Sbjct: 485 ccatactgttgccaggagttgaagactattgcatctggggtccactggcggtcgttttca 426
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|| ||||||||||| || || || ||||| || || |||||||| ||| || | |||
Sbjct: 425 tttacgaagagtggagcatagctcgccatgtggacgatatcactattcacttctaatcca 366
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaag 745
||||||| |||||||| ||||| ||||| |||||
Sbjct: 365 atgaggaatgcagcttctgccaatgaagctagaag 331
>gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62C12
5-PRIME, mRNA sequence
Length = 557
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||| || || ||||| || ||||||| ||||||||||||||||||||||||
Sbjct: 371 ggatggatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagtt 312
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
||||| || ||||||||||||||||| || || || ||| ||||| |||| || ||
Sbjct: 311 ccatactgttgccaggagttgaagactattgcatctggggtccactggcggtcgttttca 252
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|| ||||||||||| || || || ||||| || || |||||||| ||| || | |||
Sbjct: 251 tttacgaagagtggagcatagctcgccatgtggacgatatcactattcacttctaatcca 192
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaag 745
||||||| |||||||| ||||| ||||| |||||
Sbjct: 191 atgaggaatgcagcttctgccaatgaagctagaag 157
>gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63F05
5-PRIME, mRNA sequence
Length = 415
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||| || || ||||| || ||||||| ||||||||||||||||||||||||
Sbjct: 371 ggatggatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagtt 312
Query: 591 ccatagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcg 650
||||| || ||||||||||||||||| || || || ||| ||||| |||| || ||
Sbjct: 311 ccatactgttgccaggagttgaagactattgcatctggggtccactggcggtcgttttca 252
Query: 651 ttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacca 710
|| ||||||||||| || || || ||||| || || |||||||| ||| || | |||
Sbjct: 251 tttacgaagagtggagcatagctcgccatgtggacgatatcactattcacttctaatcca 192
Query: 711 gtgaggaaagcagcttcagccaacgaagcaagaag 745
||||||| |||||||| ||||| ||||| |||||
Sbjct: 191 atgaggaatgcagcttctgccaatgaagctagaag 157
>gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. vulgare cDNA clone HA25B23
5-PRIME, mRNA sequence
Length = 558
Score = 91.7 bits (46), Expect = 3e-017
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||| || || ||||| || ||||||| ||||||||||||||||||||||||
Sbjct: 107 ggatggatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagtt 48
Query: 591 ccatagtgctgccaggagttgaagac 616
||||| || |||||||||||||||||
Sbjct: 47 ccatactgttgccaggagttgaagac 22
>gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_B24 5', mRNA sequence
Length = 453
Score = 83.8 bits (42), Expect = 8e-015
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 531 ggatggatcatggcgccgcttgactcgcggaaaatcgtctgcatccagtagctaggagtt 590
|||||||||| || || ||||| || ||||||| || |||||||||||||||||||||
Sbjct: 147 ggatggatcacagcaccacttgattcacggaaaaatgtatgcatccagtagctaggagtt 88
Query: 591 ccatagtgctgccaggagttgaagac 616
||||| || |||||||||||||||||
Sbjct: 87 ccatactgttgccaggagttgaagac 62
>gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_M09 5', mRNA sequence
Length = 429
Score = 79.8 bits (40), Expect = 1e-013
Identities = 172/216 (79%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 240 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 181
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 180 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 121
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 120 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 61
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccg 395
|||| ||||||||||||| ||| ||| |||||||
Sbjct: 60 tttgaccccagcgcgttgatgctagcctggagcccg 25
>gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200082D06F1, mRNA sequence
Length = 240
Score = 79.8 bits (40), Expect = 1e-013
Identities = 172/216 (79%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
||||| || ||||||| || || ||| ||||| || ||||| | || ||||||||| | |
Sbjct: 225 atctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggca 166
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
|| ||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | |||
Sbjct: 165 gcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgacc 106
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||| | ||||||||||| || || || ||| | || |||| |||||||| || || |||
Sbjct: 105 ttggttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcg 46
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccg 395
|||| ||||||||||||| ||| ||| |||||||
Sbjct: 45 tttgaccccagcgcgttgatgctagcctggagcccg 10
>gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M19r 3', mRNA sequence
Length = 514
Score = 73.8 bits (37), Expect = 8e-012
Identities = 181/228 (79%), Gaps = 1/228 (0%)
Strand = Plus / Plus
Query: 227 gaaggagtgaggagccagcgtgacctgcatctgctccgcggcgttgctcagctggctttt 286
||||||||| | ||| ||||||||||||||||| ||||||||||| || ||| ||| |
Sbjct: 273 gaaggagtgggcagcgagcgtgacctgcatctgttccgcggcgttatgcaactgacttgt 332
Query: 287 caccggcgcaaccttgttcgggttactgaaggagttctcgtccatgacgttgccagacgt 346
||| ||| | |||||| | ||||||||||| || || || ||| | || |||| |||||
Sbjct: 333 cacgggcacgaccttggttgggttactgaaagaattttcatcctttacattgctggacgt 392
Query: 347 gaggacggtggcggttgatcccagcgcgttgacgctggccccgagcccgctcgtggagac 406
||| || || ||| |||| ||||||||||||| ||| ||| ||||||| | |||
Sbjct: 393 gagaacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacanagat 452
Query: 407 cgtgaggctaacggggtccgacccg-aagttcacgaccttcactctca 453
|||||||| |||| |||||||||| |||||||| | ||| |||||||
Sbjct: 453 tgtgaggctcacggtgtccgacccgaaagttcacaatctttactctca 500
>gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04K11r 3', mRNA sequence
Length = 499
Score = 65.9 bits (33), Expect = 2e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 243 agcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttg 302
||||||||||||||||| ||||||||||| || ||| ||| |||| ||| | ||||||
Sbjct: 282 agcgtgacctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgaccttg 341
Query: 303 ttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcggtt 362
| ||||||||||| || || || ||| | || |||| |||||||| || || ||| ||
Sbjct: 342 gttgggttactgaaagaattttcatcctttacattgctggacgtgagaacagtagcgttt 401
Query: 363 gatcccagcgcgttgacgctggccccgagcccg 395
|| ||||||||||||| ||| ||| |||||||
Sbjct: 402 gaccccagcgcgttgatgctagcctggagcccg 434
>gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06J09r 3', mRNA sequence
Length = 186
Score = 65.9 bits (33), Expect = 2e-009
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 408 gtgaggctaacggggtccgacccgaagttcacgaccttcactctcaggaagctattctct 467
|||||||| |||| ||||||||| |||||||| | ||| ||||| |||||| ||||| |
Sbjct: 19 gtgaggctcacggtgtccgacccnaagttcacaatctttactctnaggaagttattcccg 78
Query: 468 gcatcctgccacgtgatcgcaga 490
| ||||||||| ||||| |||||
Sbjct: 79 gaatcctgccaggtgatagcaga 101
>gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
3-PRIME, mRNA sequence
Length = 570
Score = 65.9 bits (33), Expect = 2e-009
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 183 tccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgaggagcc 242
||||| |||||| ||| || |||| |||||| ||||| || |||| |||||||||| |
Sbjct: 440 tccgctacaagcctggactgcgccaacgccaggtcgaatgcagtgagagagtgaggaggc 499
Query: 243 agcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttg 302
|||||||||||||||| |||||| |||| || || || | |||||||| ||||||||
Sbjct: 500 agcgtgacctgcatctcctccgcagcgtcgcgcaactcgaccgtcaccggcacaaccttg 559
Query: 303 ttcgggtta 311
|| ||||||
Sbjct: 560 tttgggtta 568
>gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-17
similar to Arabinoxylan arabinofuranohydrolase gene,
mRNA sequence
Length = 332
Score = 63.9 bits (32), Expect = 7e-009
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 189 acaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgaggagccagcgtg 248
||||||| || || ||| ||||| || ||||| | || ||||||||| | ||| ||||||
Sbjct: 203 acaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtgggcagcgagcgtg 144
Query: 249 acctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaaccttgttcggg 308
||||||||||| ||||||||||| || ||| ||| |||| ||| | |||||| | |||
Sbjct: 143 acctgcatctgttccgcggcgttatgcaactgacttgtcacgggcacgaccttggttggg 84
Query: 309 ttactgaa 316
||||||||
Sbjct: 83 ttactgaa 76
>gb|BE420972.1|BE420972 HWM004.E01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.E01, mRNA sequence
Length = 1149
Score = 52.0 bits (26), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 594 tagtgctgccaggagttgaagacgatagcgtccgggttccacgtttggtcattgtcgttc 653
||||||||||| |||||||| || || || |||||| ||||| | | |||||||| ||
Sbjct: 743 tagtgctgccatgagttgaacacaatggcatccgggctccacttgcgatcattgtcattt 684
Query: 654 acgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctc 703
||||| || |||||| | |||||||||| || | ||||||||||||||
Sbjct: 683 acgaaaagcggtgcgcagcttgccatctcgactacgtcactgttcttctc 634
>gb|BE437927.1|BE437927 SFR009.A04F990512 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 515
Score = 52.0 bits (26), Expect = 3e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 695 gttcttctccagaccagtgaggaaagcagcttcagccaacgaagcaagaagactgcctct 754
|||||||||||| ||||| ||||| ||||| || |||| ||| ||||||| || |||||
Sbjct: 515 gttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctct 456
Query: 755 acccgcgtcacttctcca 772
||| || ||| |||||||
Sbjct: 455 acctgcatcagttctcca 438
>gb|BI951143.1|BI951143 HVSMEl0024K06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K06f, mRNA sequence
Length = 866
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 424 ccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccacgtga 483
|||||||||||||||| | ||| |||||||||||| ||| | | | ||||||||| ||||
Sbjct: 149 ccgacccgaagttcacaatctttactctcaggaagttatccccggaatcctgccaggtga 90
Query: 484 t 484
|
Sbjct: 89 t 89
>gb|BF622269.2|BF622269 HVSMEa0002G17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002G17f, mRNA sequence
Length = 709
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 aaccaaccaacaccaagca 61
|||||||||||||||||||
Sbjct: 355 aaccaaccaacaccaagca 373
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,321
Number of Sequences: 312970
Number of extensions: 70321
Number of successful extensions: 17447
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17393
Number of HSP's gapped (non-prelim): 53
length of query: 780
length of database: 175,134,539
effective HSP length: 19
effective length of query: 761
effective length of database: 169,188,109
effective search space: 128752150949
effective search space used: 128752150949
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)