BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.28
(3878 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 827 0.0
gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. v... 739 0.0
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 733 0.0
gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. v... 670 0.0
gb|BQ469880.1|BQ469880 HX01C05T HX Hordeum vulgare subsp. v... 573 e-161
gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA,... 557 e-156
gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA li... 539 e-151
gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. v... 533 e-149
gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots... 525 e-147
gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedl... 521 e-146
gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hyd... 517 e-145
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 466 e-129
gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. v... 438 e-121
gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots... 426 e-117
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 426 e-117
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 406 e-111
gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. v... 404 e-111
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 363 3e-098
gb|BG366351.1|BG366351 HVSMEi0006M09f Hordeum vulgare 20 DA... 359 5e-097
gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. v... 357 2e-096
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 357 2e-096
gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA li... 353 3e-095
gb|CA020497.1|CA020497 HZ36H21r HZ Hordeum vulgare subsp. v... 347 2e-093
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 327 2e-087
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 317 2e-084
gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, wat... 313 2e-083
gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedl... 305 6e-081
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 303 2e-080
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 301 9e-080
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 289 3e-076
gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA li... 285 5e-075
gb|BI957138.1|BI957138 HVSMEn0007L07f Hordeum vulgare rachi... 281 8e-074
gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. v... 270 3e-070
gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA li... 240 3e-061
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 218 1e-054
gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots... 135 1e-029
gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedl... 135 1e-029
gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedl... 135 1e-029
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 135 1e-029
gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. v... 135 1e-029
gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. v... 135 1e-029
gb|CA027985.1|CA027985 HZ60K07r HZ Hordeum vulgare subsp. v... 135 1e-029
gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-a... 127 3e-027
gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike... 127 3e-027
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 119 7e-025
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 119 7e-025
gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike... 117 3e-024
gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA li... 117 3e-024
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 115 1e-023
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 115 1e-023
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 115 1e-023
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 115 1e-023
gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. v... 115 1e-023
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 115 1e-023
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 115 1e-023
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 115 1e-023
gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots... 111 2e-022
gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm librar... 111 2e-022
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 109 7e-022
gb|CA009146.1|CA009146 HU13E22r HU Hordeum vulgare subsp. v... 109 7e-022
gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. v... 107 3e-021
gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA li... 105 1e-020
gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedl... 105 1e-020
gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgar... 105 1e-020
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 101 2e-019
gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedl... 98 3e-018
gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA li... 92 2e-016
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 88 3e-015
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 88 3e-015
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 88 3e-015
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 88 3e-015
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 88 3e-015
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 88 3e-015
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 88 3e-015
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 88 3e-015
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 88 3e-015
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 88 3e-015
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 88 3e-015
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 88 3e-015
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 88 3e-015
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 88 3e-015
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 88 3e-015
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 88 3e-015
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 88 3e-015
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 88 3e-015
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 88 3e-015
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 88 3e-015
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 88 3e-015
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 88 3e-015
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 88 3e-015
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 88 3e-015
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 88 3e-015
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 88 3e-015
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 88 3e-015
gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedl... 86 1e-014
gb|BG369245.1|BG369245 HVSMEi0023G07f Hordeum vulgare 20 DA... 86 1e-014
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 86 1e-014
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 86 1e-014
gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. v... 86 1e-014
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 86 1e-014
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 84 4e-014
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 84 4e-014
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 84 4e-014
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 84 4e-014
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 84 4e-014
gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, dro... 84 4e-014
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 82 2e-013
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 82 2e-013
gb|BG368813.1|BG368813 HVSMEi0020M13f Hordeum vulgare 20 DA... 80 6e-013
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 80 6e-013
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 78 2e-012
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 78 2e-012
gb|BQ464113.1|BQ464113 HF01G08T HF Hordeum vulgare subsp. v... 78 2e-012
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 76 1e-011
gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. v... 76 1e-011
gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. v... 76 1e-011
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 74 4e-011
gb|CA020225.1|CA020225 HV14L03r HV Hordeum vulgare subsp. v... 74 4e-011
gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. v... 72 2e-010
gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA li... 70 6e-010
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 70 6e-010
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 70 6e-010
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 70 6e-010
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 70 6e-010
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 70 6e-010
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 70 6e-010
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 70 6e-010
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 70 6e-010
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 70 6e-010
gb|BU968059.1|BU968059 HB06E15r BC Hordeum vulgare subsp. v... 70 6e-010
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 70 6e-010
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 70 6e-010
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 70 6e-010
gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. v... 70 6e-010
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 70 6e-010
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 70 6e-010
gb|BE193304.2|BE193304 HVSMEh0080I07f Hordeum vulgare 5-45 ... 68 2e-009
gb|BI948539.1|BI948539 HVSMEl0010A07f Hordeum vulgare spike... 68 2e-009
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 68 2e-009
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 68 2e-009
gb|BF259426.2|BF259426 HVSMEf0019B07f Hordeum vulgare seedl... 66 9e-009
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 66 9e-009
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 66 9e-009
gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA li... 66 9e-009
gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. v... 66 9e-009
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 64 4e-008
gb|BM368747.1|BM368747 EBem08_SQ004_H23_R embryo, 40 DPA, n... 64 4e-008
gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA li... 62 1e-007
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 60 6e-007
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 60 6e-007
gb|BG366095.2|BG366095 HVSMEi0005L08f Hordeum vulgare 20 DA... 60 6e-007
gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. v... 60 6e-007
gb|BQ665967.1|BQ665967 HZ01L16u HZ Hordeum vulgare subsp. v... 60 6e-007
gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hyd... 60 6e-007
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 60 6e-007
gb|CA023762.1|CA023762 HZ47F10r HZ Hordeum vulgare subsp. v... 60 6e-007
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 58 2e-006
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 58 2e-006
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 58 2e-006
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 58 2e-006
gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare s... 56 9e-006
gb|BJ464018.1|BJ464018 BJ464018 K. Sato unpublished cDNA li... 56 9e-006
gb|BE216853.1|BE216853 HV_CEb0011N06f Hordeum vulgare seedl... 52 1e-004
gb|BQ663315.1|BQ663315 HU02B19u HU Hordeum vulgare subsp. v... 52 1e-004
gb|CA009062.1|CA009062 HU13B03r HU Hordeum vulgare subsp. v... 52 1e-004
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 52 1e-004
gb|BI779456.2|BI779456 EBro01_SQ004_B14_R root, 3 week, hyd... 50 6e-004
gb|BF253907.1|BF253907 HVSMEf0002H08f Hordeum vulgare seedl... 48 0.002
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 48 0.002
gb|AV931127.1|AV931127 AV931127 K. Sato unpublished cDNA li... 48 0.002
gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. v... 48 0.002
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 48 0.002
gb|BU996532.1|BU996532 HM13O16r HM Hordeum vulgare subsp. v... 48 0.002
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 46 0.009
gb|BQ468579.1|BQ468579 HM01K12T HM Hordeum vulgare subsp. v... 46 0.009
gb|BQ767053.1|BQ767053 EBro08_SQ007_H22_R root, 3 week, dro... 46 0.009
gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots... 44 0.034
gb|AL502925.1|AL502925 AL502925 Hordeum vulgare Barke roots... 42 0.14
gb|BQ468196.1|BQ468196 HP01F17T HP Hordeum vulgare subsp. v... 42 0.14
>gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. vulgare cDNA clone HV11P23
5-PRIME, mRNA sequence
Length = 619
Score = 827 bits (417), Expect = 0.0
Identities = 558/605 (92%)
Strand = Plus / Minus
Query: 2152 aactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgcttcc 2211
||||||||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 615 aactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgcttcc 556
Query: 2212 tttatagccttactattattgatatagtgatcacaatccaagttcagcaaataaggagca 2271
|| | ||||| || || || | |||||||||||||||||||||||||| || ||||||
Sbjct: 555 ttgactgccttgctgttgttcacatagtgatcacaatccaagttcagcatgtatggagca 496
Query: 2272 ttagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtgatgg 2331
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 ttagttagtacagcagagacccggaccaatgcgttcatagcaccagccttcttgtgatgg 436
Query: 2332 ttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttcc 2391
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttatagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttcc 376
Query: 2392 acatcatggccaccactttgaccaaggaaaacctgaatcattccaggatgatcacggaca 2451
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 375 acatcaaggccaccactttgaccaaggaagacctgaatcattccagggtgatcacggaca 316
Query: 2452 ttatttccgggccatggagttccatcctgcattgtccatccttcctcaggaaccttttgg 2511
|| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || |||
Sbjct: 315 ttgtttcctggccagggagtaccatcctgcatggtccatccttcctcaggaactttctgg 256
Query: 2512 gctttagcaaccaaggcattgattctgaccttgaattcctcatactctctcttcattgct 2571
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 255 gctttagcaaccaaagcattgattcggatcttgaattcctcatactctctcttcattgct 196
Query: 2572 ctccgttctctaacaaagtttggcgccaccttgtctttcaggtagtctatcttctgttgg 2631
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 195 ctcctgtccctaacaaagtttggtaccaccttgtctttcaggtagtctatcttctgttga 136
Query: 2632 aagtaccactctggagcacgaggctcaaggctatatcttttgcagaaaggaacccatttc 2691
|||||||||||||||||||||||||||| || || | || ||||||||||||||||||
Sbjct: 135 aagtaccactctggagcacgaggctcaatactgtacttcttacagaaaggaacccatttc 76
Query: 2692 tttgcaaattcagatgtttcagacaatgcttcaaatgtcagcatggcagcaccatcatca 2751
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 75 tttgcaaattcagatgtttcagacaatccttcgaatgtcagcatggcagcaccatcatca 16
Query: 2752 gaaac 2756
|||||
Sbjct: 15 gaaac 11
>gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. vulgare cDNA clone HM07A02
5-PRIME, mRNA sequence
Length = 619
Score = 739 bits (373), Expect = 0.0
Identities = 557/617 (90%), Gaps = 1/617 (0%)
Strand = Plus / Minus
Query: 2041 acataaattgggccctggataccatccaaacctttcatgttgatatcgaaaaagacaaca 2100
||||| || ||||| || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 616 acatagatggggccttgaataccatccaaacctttcatgttgatatcaaagaagacgacg 557
Query: 2101 tttctgttagcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcaca 2160
|| |||| |||||||||||||| || ||||| || ||||||||||| |||||||||
Sbjct: 556 ttcttgttggcatatcgatcatgacggtcaatggagtcgaatctttgagggaactgcaca 497
Query: 2161 tagcaaactttctttccaagcaaaggatccatcataaaacacattgcttcctttatagcc 2220
|| ||||| |||||||| | ||||||||||||||| ||||||||||||||||| | |||
Sbjct: 496 taacaaaccttctttccgaccaaaggatccatcatgaaacacattgcttccttgactgcc 437
Query: 2221 ttactattattgatatagtgatcacaatccaagttcagcaaataaggagcattagttagt 2280
|| || || || | |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 436 ttgctgttgttcacatagtgatcacaatccaagttcagcatgtatggagcattagttagt 377
Query: 2281 acagcagagactcggaccaatgcattcatagcaccagccttcttgtgatggttgtagcct 2340
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 376 acagcagagacccggaccaatgcgttcatagcaccagccttcttgtgatggttatagcct 317
Query: 2341 ggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttccacatcatgg 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 316 ggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttccacatcaagg 257
Query: 2401 ccaccactttgaccaaggaaaacctgaatcattccaggatgatcacggacattatttccg 2460
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 256 ccaccactttgaccaaggaagacctgaatcattccagggtgatcacggacattgtttcct 197
Query: 2461 ggccatggagttccatcctgcattgtccatccttcctcaggaaccttttgggctttagca 2520
||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 196 ggccagggagtaccatcctgcatggtccatccttcctcaggaactttctgggctttagca 137
Query: 2521 accaaggcattgattctgaccttgaattcctcatactctctcttcattgctctccgttct 2580
||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 136 accaaagcattgattcggatcttgaattcctcatactctctcttcattgctctcctgtcc 77
Query: 2581 ctaacaaagtttggcgccaccttgtctttcaggtagtctatcttctgttggaagtaccac 2640
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 76 ctaacaaagtttggtaccaccttgtctttcaggtagtctatcttctgttaaaggtaccac 17
Query: 2641 tctggagcacgaggctc 2657
||| |||||||||||||
Sbjct: 16 tct-gagcacgaggctc 1
>gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G05f, mRNA sequence
Length = 624
Score = 733 bits (370), Expect = 0.0
Identities = 520/570 (91%)
Strand = Plus / Minus
Query: 2235 atagtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagactcg 2294
|||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 594 atagtgatcacaatccaagttcagcatgtatggagcattagttagtccagcagagacccg 535
Query: 2295 gaccaatgcattcatagcaccagccttcttgtgatggttgtagcctggccgtttttctct 2354
||||||||| || ||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct: 534 gaccaatgcgttaatagcaccagccttcttgtatgggttatagcctggcgttttttctct 475
Query: 2355 tgaaacataaaccaatcgaggcagctcatttccttccacatcatggccaccactttgacc 2414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 474 tgaaacataaaccaatcgaggcagctcatttccttccacatcaaggccaccactttgacc 415
Query: 2415 aaggaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagttcc 2474
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 414 aaggaagacctgaatcattccagggtgatcacggacattgtttcctggccagggagtacc 355
Query: 2475 atcctgcattgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgat 2534
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 354 atcctgcatggtccatccttcctcaggaactttctgggctttagcaaccaaggcattgat 295
Query: 2535 tctgaccttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttgg 2594
|| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 294 tcggatcttgaattcctcatactctctcttcattgctctcctgtccctaacaaagtttgg 235
Query: 2595 cgccaccttgtctttcaggtagtctatcttctgttggaagtaccactctggagcacgagg 2654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 234 taccaccttgtctttcaggtagtctatcttctgttgaaagtaccactctggagcacgagg 175
Query: 2655 ctcaaggctatatcttttgcagaaaggaacccatttctttgcaaattcagatgtttcaga 2714
||||| || || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ctcaatactgtacttcttacagaaaggaacccatttctttgcaaattcagatgtttcaga 115
Query: 2715 caatgcttcaaatgtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatc 2774
|||| |||| |||||||||||||||||||||||||||||||| ||||| || | ||| ||
Sbjct: 114 caatccttcgaatgtcagcatggcagcaccatcatcagaaacatagcaagagagcttgtc 55
Query: 2775 aactggataatccaccgaaaggatagatag 2804
||| |||||||| || | |||||||||||
Sbjct: 54 aaccggataatctacagccaggatagatag 25
>gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. vulgare cDNA clone HV07A23
5-PRIME, mRNA sequence
Length = 569
Score = 670 bits (338), Expect = 0.0
Identities = 510/570 (89%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 2187 atccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcaca 2246
||||||||| ||||||||||||||||| | ||||| || || || | |||||||| ||
Sbjct: 569 atccatcatgaaacacattgcttccttgactgccttgctgttgttcacatagtgatnnca 510
Query: 2247 atccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcatt 2306
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 509 atccaagttcagcatgtatggagcattagttagtacagcagagacccggaccaatgcgtt 450
Query: 2307 catagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaac 2366
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 catagcaccnnncttcttgtgatggttatagcctggccgtttttctcttgaaacataaac 390
Query: 2367 caatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctg 2426
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 389 caatcgaggcagctcatttccttnnncatcaaggccaccactttgaccaaggaagacctg 330
Query: 2427 aatcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgt 2486
|||||||||||| |||||||||||||| ||||| |||| |||| ||||||||||| ||
Sbjct: 329 aatcattccagggtgatcacggacattgtttcctggcccnngagtaccatcctgcatggt 270
Query: 2487 ccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaa 2546
|||||||||||||||||| || ||||||||||||||||| |||| |||| || ||||||
Sbjct: 269 ccatccttcctcaggaactttctgggctttagcaaccaaagcatnnattcggatcttgaa 210
Query: 2547 ttcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccaccttgtc 2606
||||||||||||||||||||||||||||| || |||||||||||||| | ||||||
Sbjct: 209 ttcctcatactctctcttcattgctctcctgtccctaacaaagtttggtacnnncttgtc 150
Query: 2607 tttcaggtagtctatcttctgttggaagtaccactctggagcacgaggctcaaggctata 2666
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct: 149 tttcaggtagtctatcttctgttgaaagtaccactctggagcacgaggctcaatactgtc 90
Query: 2667 tcttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaa 2726
| | || |||||| | |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 89 t-tcttacagaaa-gnacccatttctttgcaaattcagatgtttcagacaatccttcgaa 32
Query: 2727 tgtcagcatggcagcaccatcatcagaaac 2756
||||||||||||||||||||||||||||||
Sbjct: 31 tgtcagcatggcagcaccatcatcagaaac 2
>gb|BQ469880.1|BQ469880 HX01C05T HX Hordeum vulgare subsp. vulgare cDNA clone HX01C05
5-PRIME, mRNA sequence
Length = 642
Score = 573 bits (289), Expect = e-161
Identities = 490/557 (87%)
Strand = Plus / Minus
Query: 3208 ccgccatcgttcctcgtctggtgcatcctctcctgcttctgcttccagctctccatcctc 3267
|||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 581 ccgccatcattcctggtctgatgcagcctctcctgcttctgcttccagctctccatcctc 522
Query: 3268 tccttccatgctacgctcccgtagccatatgcggcgagatccttggaagggtccatagac 3327
|| ||||| || |||||||| || || || | | | ||||||||| |||||||| ||
Sbjct: 521 tctttccaggcgacgctcccatacccgtaggaaccaatatccttggatgggtccatggat 462
Query: 3328 ctcggttgcacaggaaggttgggatccgcgtacgggagagggtgaatcctcttccccccg 3387
|| ||||||||||||||||||| ||| || || ||||| ||||| |||||||| ||||||
Sbjct: 461 cttggttgcacaggaaggttggaatcagcataagggagcgggtggatcctctttcccccg 402
Query: 3388 ccacccacgaacgagggcacaagggcgtgctggtccggcgggatgtcatcgaccatctgt 3447
|| || ||||| || || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 401 ccgccgacgaaggaaggaacaagggcatgctgctccggcgggatgtcatcgaccatctgg 342
Query: 3448 ccgttggtgaggaggggaacattggggatgggctggaatggctgcggcacgccgtcgagg 3507
|| |||||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||
Sbjct: 341 ccattggtgaggagggggacattggggtttggctggaagggctggtgcacgccgtcgagg 282
Query: 3508 tcggcgccgcggccgtagctcatgtgggcgtggagcatggactcggcgaggtactgggag 3567
|| |||||||||||||| |||||||||| |||||||||||||||||| |||||| |||
Sbjct: 281 tctccgccgcggccgtaggtcatgtgggcatggagcatggactcggcggcgtactgcgag 222
Query: 3568 tcgtgcttgtcgccccagttgaactcgttctccaggtcgtcgacgccgtcctcctcctcg 3627
|||| | |||| | |||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct: 221 tcgtccctgtccctccagttgaactcgtcctcgaggtcgtcggcgccgtcctcctcctca 162
Query: 3628 tccccgggcacgcgcgcgcaccccttgaagcgcttgaagcgggtcttgcactgggggcag 3687
|||||||||||||||||||||||||||| ||||||| | | |||||||||||| ||||||
Sbjct: 161 tccccgggcacgcgcgcgcaccccttgaggcgcttgtatctggtcttgcactgtgggcag 102
Query: 3688 ttctgcgtgccctcgcggcgctcgtactcgtagcagtcccggcagatggggaaggcgcac 3747
||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 101 ttctgggtgccctcgcgtcgctcgtactcgtagcagtcgcggcagacggggaaggcgcac 42
Query: 3748 tcgttgcaggccacgaa 3764
||||||||||| |||||
Sbjct: 41 tcgttgcaggcgacgaa 25
Score = 75.8 bits (38), Expect = 1e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 3156 ctgtctagcttcatccattagtggtagatctgcatcatcaccatca 3201
|||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 642 ctgtctagcttcatccattagtggtagatctgcatcgtcgccatca 597
>gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_E01 5', mRNA sequence
Length = 477
Score = 557 bits (281), Expect = e-156
Identities = 425/473 (89%)
Strand = Plus / Minus
Query: 1948 ggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatat 2007
||||||||||||||||| ||||| |||||||||||||||||||||||||| || || ||
Sbjct: 477 ggccagcagttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtac 418
Query: 2008 aatgcctgccttctgaagacacatccagtacccacataaattgggccctggataccatcc 2067
| |||||||||||||||||||||||||||||| ||||| || ||||| || |||||||||
Sbjct: 417 agtgcctgccttctgaagacacatccagtaccaacatagatggggccttgaataccatcc 358
Query: 2068 aaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcga 2127
|||||||||||||||||||| || ||||| || || |||| ||||||||||| || ||
Sbjct: 357 aaacctttcatgttgatatcaaagaagacgacgttcttgttggcatatcgatcgtgacgg 298
Query: 2128 tcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaagga 2187
||||| || ||||||||||| ||||||||||| ||||| |||||||| | |||||||
Sbjct: 297 tcaatggagtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaagga 238
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| ||||||||||||||||| | ||||| || || || | |||||||||||||
Sbjct: 237 tccatcatgaaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaa 178
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 177 tccaagttcagcatgtatggagcattagttagtacagcagagacccggaccaatgcgttc 118
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 117 atagcaccagccttcttgtgatggttatagcctggccgtttttctcttgaaacataaacc 58
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaa 2420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 57 aatcgaggcagctcatttccttccacatcaaggccaccactttgaccaaggaa 5
>gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd1a04 5', mRNA sequence
Length = 476
Score = 539 bits (272), Expect = e-151
Identities = 427/476 (89%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 2018 ttctgaagacacatcc-agtacccacataaattgggccctggataccatccaaacctttc 2076
|||||||||||||||| |||||| ||||| || ||||| || ||||||||||||||||||
Sbjct: 476 ttctgaagacacatcccagtaccaacatagatggggccttgaataccatccaaacctttc 417
Query: 2077 atgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccca 2136
||||||||||| || ||||| || || |||| ||||||||||| || || |||||
Sbjct: 416 atgttgatatcaaagaagacgacgttcttgttggcatatcgatcgtgacggtcaatggag 357
Query: 2137 tcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcata 2196
|| ||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 356 tcgaatctttgagggaactgcacataacaaaccttctttccgaccaaaggatccatcatg 297
Query: 2197 aaacacattgcttcctttatagccttactattattgatatagtgatcacaatccaagttc 2256
||||||||||||||||| | ||||| || || || | ||||||||||||||||||||||
Sbjct: 296 aaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaatccaagttc 237
Query: 2257 agcaaataaggagcattagttagtacagcagagactcggaccaatgcattcatagcacca 2316
|||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 236 agcatgtatggagcattagttagtacagcagagacccggaccaatgcgttcatagcacca 177
Query: 2317 gccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggc 2376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gccttcttgtgatggttatagcctggccgtttttctcttgaaacataaaccaatcgaggc 117
Query: 2377 agctcatttccttccacatcatggccaccactttgaccaaggaaaacctgaatcattcca 2436
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 116 agctcatttccttccacatcaaggccaccactttgaccaaggaagacctgaatcattcca 57
Query: 2437 ggatgatcacggacattatttccgggccatggagttccatcctgcattgtccatcc 2492
|| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 56 gggtgatcacggacattgtttcc-ggccagggagtaccatcctgcatggtccatcc 2
>gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. vulgare cDNA clone HM13A10
5-PRIME, mRNA sequence
Length = 629
Score = 533 bits (269), Expect = e-149
Identities = 428/481 (88%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 490 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 431
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 430 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 371
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccctggataccatccaaaccttt 2075
|||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 370 ccttctgaagacacatccagtaccaacatagatggggccttgaataccatccaaaccttt 311
Query: 2076 catgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccc 2135
|||||||||||| || ||||| || || |||| |||||||||||||| || |||||
Sbjct: 310 catgttgatatcaaagaagacgacgttcttgttggcatatcgatcatgacggtcaatgga 251
Query: 2136 atcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcat 2195
|| ||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 250 gtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaaggatccatcat 191
Query: 2196 aaaacacattgcttcctttatagccttactattattgatatagtgatcacaatccaagtt 2255
||||||||||||||||| | ||||| || || || | |||||||||||||||||||||
Sbjct: 190 gaaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaatccaagtt 131
Query: 2256 cagcaaataaggagcattagttagtacagcagagactcggaccaatgcattcatagcacc 2315
||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 130 cagcatgtatggagcattagttagtacagcagagacccggaccaatgcgttcatagcacc 71
Query: 2316 agccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgagg 2375
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 agccttcttgtgatggttatagcctggccgtttttctcttgaaacataaaccaatcgagg 11
Query: 2376 c 2376
|
Sbjct: 10 c 10
Score = 65.9 bits (33), Expect = 9e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 1754 gttgatttacaatactagccttttcattttcagctcctggagcggcttcatcaatttcac 1813
|||| |||||||||| |||||| | | |||||||||||| |||||||||||||||||||
Sbjct: 629 gttggtttacaataccagccttctgagtttcagctcctgcggcggcttcatcaatttcac 570
Query: 1814 caagagcatatgcaggggcttgatt 1838
||| || || ||||| | ||||||
Sbjct: 569 taagtgcgtacgcaggtgattgatt 545
>gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H13T 5', mRNA sequence
Length = 700
Score = 525 bits (265), Expect = e-147
Identities = 448/509 (88%)
Strand = Plus / Minus
Query: 1330 atggagttaatgtacgaaaacctttccaggaactttagtccaccaccatacccataccag 1389
|||||||| ||||| ||||| ||||||| || || |||||||||||||||||||||||
Sbjct: 628 atggagttgatgtaggaaaatctttccaaaaatttcagtccaccaccatacccataccaa 569
Query: 1390 agagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctgg 1449
|||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 568 agagggcaatggttgctgaagaagatctcaatagacccaagagcccaccgaagaacctgg 509
Query: 1450 tgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatg 1509
| ||||||||| |||||||||||||| || ||||| ||||| || | ||||||||| |||
Sbjct: 508 ttaagacgatctgaaagattgagaggcgcagaacccttgaatgcaggccgtttaggaatg 449
Query: 1510 cagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtg 1569
||||||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct: 448 cagtaaattgatcgccagccatggcaatgcatcttaaacccagttaggatatcctctgta 389
Query: 1570 actgatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaa 1629
||||| ||||| ||||| ||||| |||||||||||| |||| ||||||||||| ||||||
Sbjct: 388 actgacccatagatccagccaatctcttttccccagtctgtcttgtcttcatagccacaa 329
Query: 1630 ctgatgacatgtatagcttccttcagaagagaagctggactggcactcttcagggttcca 1689
| ||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||||
Sbjct: 328 ccgatgacatggatagcttccttcagaagagaagcaggactatcacacctcagggttcca 269
Query: 1690 ccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttccaac 1749
|||||||||||||||||||||||||||||||| | |||||||||||||||||| || | |
Sbjct: 268 ccattctcaagaagtgtggatgcaacaaaaacggcagactggccaaatttcttctctagc 209
Query: 1750 ttctgttgatttacaatactagccttttcattttcagctcctggagcggcttcatcaatt 1809
|||||||| |||||||||| |||||| | | |||||||||||| |||||||||||||||
Sbjct: 208 ttctgttggtttacaataccagccttctgagtttcagctcctgcggcggcttcatcaatt 149
Query: 1810 tcaccaagagcatatgcaggggcttgatt 1838
|||| ||| || || ||||| | ||||||
Sbjct: 148 tcactaagtgcgtacgcaggtgattgatt 120
Score = 73.8 bits (37), Expect = 4e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 65 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 6
Query: 1956 gttgc 1960
|||||
Sbjct: 5 gttgc 1
>gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016K01f, mRNA sequence
Length = 588
Score = 521 bits (263), Expect = e-146
Identities = 440/499 (88%)
Strand = Plus / Minus
Query: 1315 gtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactttagtccacca 1374
|||||||| || || |||||||| ||||| ||||| |||||| || || |||||||||
Sbjct: 511 gtccaaggatagacaatggagttgatgtaggaaaatctttccgaaaatttcagtccacca 452
Query: 1375 ccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcc 1434
|||||||||||||| |||||||| |||||||||||||| || ||||| || |||||||||
Sbjct: 451 ccatacccataccaaagagggcaatggttgctgaagaagatctcaatagacccaagagcc 392
Query: 1435 caccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcg 1494
|||||||||||||||| ||||||||| |||||||||||||| || ||||| ||||| ||
Sbjct: 391 caccgaagaacctggttaagacgatctgaaagattgagaggcgcagaacccttgaatgca 332
Query: 1495 gcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagta 1554
| ||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 331 ggccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatcttaaacccagtt 272
Query: 1555 agaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttg 1614
|| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| |||| |||
Sbjct: 271 aggatatcctctgtaactgacccatagatccagccaatctcttttccccagtctgtcttg 212
Query: 1615 tcttcatatccacaactgatgacatgtatagcttccttcagaagagaagctggactggca 1674
|||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 211 tcttcatagccacaaccgatgacatggatagcttccttcagaagagaagcaggactatca 152
Query: 1675 ctcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactgaagactggcca 1734
| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 151 cacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggcagactggcca 92
Query: 1735 aatttcttttccaacttctgttgatttacaatactagccttttcattttcagctcctgga 1794
|||||||| || | ||||||||| |||||||||| |||||| | | ||||||||||||
Sbjct: 91 aatttcttctctagcttctgttggtttacaataccagccttctgagtttcagctcctgcg 32
Query: 1795 gcggcttcatcaatttcac 1813
|||||||||||||||||||
Sbjct: 31 gcggcttcatcaatttcac 13
>gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_F12 5', mRNA sequence
Length = 596
Score = 517 bits (261), Expect = e-145
Identities = 505/585 (86%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 1185 cgtagcaaaaatgcagatgaaaagtgacatgaaccacaggctggcaacattgttaagctc 1244
|||||| |||||||||||||||||||||||| |||| | ||||||| ||| |||||||
Sbjct: 588 cgtagcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgataagctc 529
Query: 1245 tggcgtgataaatttccctgtcagcaagcagatggcaggcaatgtgcaataggccaagag 1304
||| ||||| || || || || | ||||||||| || ||||| || || || |||| ||
Sbjct: 528 tggagtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagccagaag 469
Query: 1305 cgggatagatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactt 1364
|| || || |||||||| || || |||||||| ||||| ||||| ||||||| || ||
Sbjct: 468 tggaatggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaaaattt 409
Query: 1365 tagtccaccacc-atacccataccagagagggcagtggttgctgaagaaaatttcaattg 1423
||||||||||| |||||||||||| |||||||| |||||||||||||| || ||||| |
Sbjct: 408 cagtccaccacccatacccataccaaagagggcaatggttgctgaagaagatctcaatag 349
Query: 1424 aaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaac 1483
| ||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||
Sbjct: 348 acccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaac 289
Query: 1484 ctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatct 1543
| ||||| || | ||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct: 288 ccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatct 229
Query: 1544 taaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttcccc 1603
|||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||
Sbjct: 228 taaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcccc 169
Query: 1604 agcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcagaagagaag 1663
|| |||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 168 agtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagagaag 109
Query: 1664 ctggactggcactcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactg 1723
| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 108 caggactatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacgg 49
Query: 1724 aagactggccaaatttcttttccaacttctgttgatttacaatac 1768
|||||||||||||||||| || | ||||||||| ||||||||||
Sbjct: 48 cagactggccaaatttcttctctagcttctgttggtttacaatac 4
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 466 bits (235), Expect = e-129
Identities = 544/647 (84%)
Strand = Plus / Minus
Query: 829 agatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattca 888
||||| || |||||||| || || ||||||||||||||||| || || ||||||||||||
Sbjct: 660 agatgaacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattca 601
Query: 889 tatccgttgttgatcgcattggaaatgccagctaccactccaatgaagttcagtaggagc 948
|||||||||||||| || ||||| |||||||| ||||| || ||||||||||| || |||
Sbjct: 600 tatccgttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagc 541
Query: 949 agggttgtcggaggtatcagaagggtcgtccatttgaatgtgtacagctctgagaactcc 1008
||||| ||||| || |||| | ||| |||||||||||||| |||||||| || ||||||
Sbjct: 540 agggtggtcgggggaatcaacaaggttgtccatttgaatgtatacagctcagaaaactcc 481
Query: 1009 tcgtcgtctccgcccttggatgtcacagtgaagctcgtgtctacaccagctatgaccttg 1068
|| || |||||| |||| | ||| || |||||||| ||||| ||||||||||| ||||||
Sbjct: 480 tcatcatctccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttg 421
Query: 1069 agtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgc 1128
|| ||||| |||||||| ||||| ||||| | ||| || |||||||||||||| ||||||
Sbjct: 420 agaagtccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgc 361
Query: 1129 tcgtttctccaccagtcatcgatgcctacaccactccatctcatttccaggatgctcgta 1188
|||||||||||||| || || | | |||| | ||||||||||||||| || | ||||
Sbjct: 360 tcgtttctccaccaatcgtcaactgcgacacgagcccatctcatttccagaatacccgta 301
Query: 1189 gcaaaaatgcagatgaaaagtgacatgaaccacaggctggcaacattgttaagctctggc 1248
|| |||||||||||||||||||||||| |||| | ||||||| ||| ||||||||||
Sbjct: 300 gcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgctaagctctgga 241
Query: 1249 gtgataaatttccctgtcagcaagcagatggcaggcaatgtgcaataggccaagagcggg 1308
||||| || || || || | ||||||||| || ||||| || || || |||| || ||
Sbjct: 240 gtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagccagaagtgga 181
Query: 1309 atagatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactttagt 1368
|| || |||||||| || || |||||||| ||||| ||||| ||||||| || || |||
Sbjct: 180 atggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaaaatttcagt 121
Query: 1369 ccaccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaacca 1428
|||||||||||||||||||| |||||||| |||||||||||||| || ||||| || |||
Sbjct: 120 ccaccaccatacccataccaaagagggcaatggttgctgaagaagatctcaatagaccca 61
Query: 1429 agagcccaccgaagaacctggtgaagacgatcggaaagattgagagg 1475
|||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 60 agagcccaccgaagaacctggttaagacgatctgaaagattgagagg 14
>gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D18
5-PRIME, mRNA sequence
Length = 654
Score = 438 bits (221), Expect = e-121
Identities = 365/413 (88%)
Strand = Plus / Minus
Query: 1426 ccaagagcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacct 1485
||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||
Sbjct: 646 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 587
Query: 1486 ttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatctta 1545
||||| || | ||||||||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 586 ttgaatgcaggccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatctta 527
Query: 1546 aacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccag 1605
|||||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 526 aacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttccccag 467
Query: 1606 cctgttttgtcttcatatccacaactgatgacatgtatagcttccttcagaagagaagct 1665
|||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 466 tctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagagaagca 407
Query: 1666 ggactggcactcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactgaa 1725
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 406 ggactatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggca 347
Query: 1726 gactggccaaatttcttttccaacttctgttgatttacaatactagccttttcattttca 1785
||||||||||||||||| || | ||||||||| |||||||||| |||||| | | |||||
Sbjct: 346 gactggccaaatttcttctctagcttctgttggtttacaataccagccttctgagtttca 287
Query: 1786 gctcctggagcggcttcatcaatttcaccaagagcatatgcaggggcttgatt 1838
||||||| ||||||||||||||||||| ||| || || ||||| | ||||||
Sbjct: 286 gctcctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgatt 234
Score = 176 bits (89), Expect = 4e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 179 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 120
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 119 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 60
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccct 2056
|||||| ||||||||||||||||| ||||| || |||||||
Sbjct: 59 ccttctcaagacacatccagtaccaacatagatggggccct 19
>gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C19V 5', mRNA sequence
Length = 497
Score = 426 bits (215), Expect = e-117
Identities = 380/434 (87%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 1406 tgaagaaaatttcaattgaaccaagagcccacc-gaagaacctggtgaagacgatcggaa 1464
||||||| || ||||| || ||||||||||||| |||||||||||| ||||||||| |||
Sbjct: 497 tgaagaagatctcaatagacccaagagcccacccgaagaacctggttaagacgatctgaa 438
Query: 1465 agattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgc 1524
||||||||||| || ||||| ||||| || | ||||||||| |||||||||||||| |||
Sbjct: 437 agattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcgc 378
Query: 1525 caaccatggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatc 1584
|| |||||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| |||
Sbjct: 377 cagccatggcaatgcatcttaaacccagttaggatatcctctgtaactgacccatagatc 318
Query: 1585 caaccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgtata 1644
|| ||||| |||||||||||| |||| ||||||||||| ||||||| ||||||||| |||
Sbjct: 317 cagccaatctcttttccccagtctgtcttgtcttcatagccacaaccgatgacatggata 258
Query: 1645 gcttccttcagaagagaagctggactggcactcttcagggttccaccattctcaagaagt 1704
|||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||
Sbjct: 257 gcttccttcagaagagaagcaggactatcacacctcagggttccaccattctcaagaagt 198
Query: 1705 gtggatgcaacaaaaactgaagactggccaaatttcttttccaacttctgttgatttaca 1764
||||||||||||||||| | |||||||||||||||||| || | ||||||||| ||| ||
Sbjct: 197 gtggatgcaacaaaaacggcagactggccaaatttcttctctagcttctgttggtttnca 138
Query: 1765 atactagccttttcattttcagctcctggagcggcttcatcaatttcaccaagagcatat 1824
|||| |||||| | | |||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 137 ataccagccttctgagtttcagctcctgcggcggcttcatcaatttcactaagtgcgtac 78
Query: 1825 gcaggggcttgatt 1838
||||| | ||||||
Sbjct: 77 gcaggtgattgatt 64
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 426 bits (215), Expect = e-117
Identities = 528/631 (83%), Gaps = 1/631 (0%)
Strand = Plus / Minus
Query: 820 aacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccc 879
|||||||| ||||| || |||||||| || || ||||||||||||||||| || || |||
Sbjct: 644 aacgggtacagatgaacaatcacccagaacgcgaagaagagcttcccgaagagaggcccc 585
Query: 880 catgattcatatccgttgttgatcgcattggaaatgccagctaccactccaatgaagttc 939
||||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||||
Sbjct: 584 catgattcatatccgttgttgattgcgttggagatgccagcaaccacaccgatgaagttc 525
Query: 940 agtaggagcagggttgtcggaggtatcagaagggtcgtccatttgaatgtgtacagctct 999
|| || |||||||| ||||| || |||| | ||| |||||||||||||| ||||||||
Sbjct: 524 agcagaagcagggtggtcgggggaatcaacaaggttgtccatttgaatgtatacagctca 465
Query: 1000 gagaactcctcgtcgtctccgcccttggatgtcacagtgaagctcgtgtctacaccagct 1059
|| |||||||| || |||||| |||| | ||| || |||||||| ||||| |||||||||
Sbjct: 464 gaaaactcctcatcatctccggcctttgttgtgacggtgaagctagtgtccacaccagct 405
Query: 1060 atgaccttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacc 1119
|| |||||||| ||||| |||||||| ||||| ||||| | ||| || ||||||||||||
Sbjct: 404 atcaccttgagaagtccttggaacacggcaaatagatgggcagagacacctccaatgacc 345
Query: 1120 caaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctcatttccagg 1179
|| |||||||||||||||||||| || || | | |||| | |||||||||||||||
Sbjct: 344 cagaactgctcgtttctccaccaatcgtcaactgcgacacgagcccatctcatttccaga 285
Query: 1180 atgctcgtagcaaaaatgcagatgaaaagtgacatgaaccacaggctggcaacattgtta 1239
|| | |||||| |||||||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct: 284 atacccgtagcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgcta 225
Query: 1240 agctctggcgtgataaatttccctgtcagcaagcagatggcaggcaatgtgcaataggcc 1299
|||||||| ||||| || || || || | ||||||||| || ||||| || || || |||
Sbjct: 224 agctctggagtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagcc 165
Query: 1300 aagagcgggatagatgtccaagggtatacgatggagttaatgtacgaaaacctttccagg 1359
| || || || || |||||||| || || |||||||| ||||| ||||| |||||||
Sbjct: 164 agaagtggaatggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaa 105
Query: 1360 aactttagtccaccaccatacccataccagagagggcagtggttgctgaagaaaatttca 1419
|| || ||||||||||||||||||||||| |||||||| |||||||| ||||| || |||
Sbjct: 104 aatttcagtccaccaccatacccataccaaagagggcaatggttgct-aagaagatctca 46
Query: 1420 attgaaccaagagcccaccgaagaacctggt 1450
|| || |||||||||||||||||||||||||
Sbjct: 45 atagacccaagagcccaccgaagaacctggt 15
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 406 bits (205), Expect = e-111
Identities = 514/617 (83%)
Strand = Plus / Minus
Query: 727 acccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatcgttggc 786
||||| || ||||||| ||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 629 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 570
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||||||||| || | ||||||||||||||||||||| ||||| || ||||||||
Sbjct: 569 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 510
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgttgatcgca 906
|| || ||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 509 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 450
Query: 907 ttggaaatgccagctaccactccaatgaagttcagtaggagcagggttgtcggaggtatc 966
||||| |||||||| ||||| || ||||||||||| || |||||||| ||||| || |||
Sbjct: 449 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 390
Query: 967 agaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtctccgcccttg 1026
| | ||| |||||||||||||| |||||||| || |||||||| || |||||| ||||
Sbjct: 389 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 330
Query: 1027 gatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacaca 1086
| ||| || |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 329 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 270
Query: 1087 gcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtca 1146
||||| ||||| | ||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct: 269 gcaaatagatgggcagagacacctccaatgacccagaactgctcgtttctccaccaatcg 210
Query: 1147 tcgatgcctacaccactccatctcatttccaggatgctcgtagcaaaaatgcagatgaaa 1206
|| | | |||| | ||||||||||||||| || | |||||| |||||||||||||||
Sbjct: 209 tcaactgcgacacgagcccatctcatttccagaatacccgtagcgaaaatgcagatgaaa 150
Query: 1207 agtgacatgaaccacaggctggcaacattgttaagctctggcgtgataaatttccctgtc 1266
||||||||| |||| | ||||||| ||| |||||||||| ||||| || || || ||
Sbjct: 149 agtgacatgtaccagatactggcaaggttgctaagctctggagtgatgaacttgcccgtt 90
Query: 1267 agcaagcagatggcaggcaatgtgcaataggccaagagcgggatagatgtccaagggtat 1326
| ||||||||| || ||||| || || || |||| || || || || |||||||| ||
Sbjct: 89 aacaagcagatagcgggcaacgtacagtaagccagaagtggaatggaggtccaaggatag 30
Query: 1327 acgatggagttaatgta 1343
|| |||||||| |||||
Sbjct: 29 acaatggagttgatgta 13
>gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. vulgare cDNA clone HB04E22
5-PRIME, mRNA sequence
Length = 634
Score = 404 bits (204), Expect = e-111
Identities = 357/408 (87%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 422 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 363
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 362 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 303
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccctggataccatccaaaccttt 2075
|||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 302 ccttctgaagacacatccagtaccaacatagatggggccttgaataccatccaaaccttt 243
Query: 2076 catgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccc 2135
|||||||||||| || ||||| || || |||| |||||||||||||| || |||||
Sbjct: 242 catgttgatatcaaagaagacgacgttcttgttggcatatcgatcatgacggtcaatgga 183
Query: 2136 atcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcat 2195
|| ||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 182 gtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaaggatccatcat 123
Query: 2196 aaaacacattgcttcctttatagccttactattattgatatagtgatcacaatccaagtt 2255
||||||||||||||||| | ||||| || || || | |||||||||||||||||||||
Sbjct: 122 gaaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaatccaagtt 63
Query: 2256 cagcaaataaggagcattagttagtacagcagagactcggaccaatgc 2303
||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 62 cagcatgtatggagcattagttagtacagcagagacccggaccaatgc 15
Score = 157 bits (79), Expect = 3e-036
Identities = 139/158 (87%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 1682 gggttccaccattctcaagaagtgtggatgcaacaaaaactga-agactggccaaatttc 1740
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 634 gggttccaccattctcaagaagtgtggatgcaacaaaaacggncagactggccaaatttc 575
Query: 1741 ttttccaacttctgttgatttacaatactagccttttcattttcagctcctggagcggct 1800
|| || | ||||||||| |||||||||| |||||| | | |||||||||||| ||||||
Sbjct: 574 ttctctagcttctgttggtttacaataccagccttctgagtttcagctcctgcggcggct 515
Query: 1801 tcatcaatttcaccaagagcatatgcaggggcttgatt 1838
||||||||||||| ||| || || ||||| | ||||||
Sbjct: 514 tcatcaatttcactaagtgcgtacgcaggtgattgatt 477
>gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50E24
5-PRIME, mRNA sequence
Length = 365
Score = 363 bits (183), Expect = 3e-098
Identities = 312/355 (87%)
Strand = Plus / Minus
Query: 2513 ctttagcaaccaaggcattgattctgaccttgaattcctcatactctctcttcattgctc 2572
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 365 ctttagcaaccaaagcattgattcggatcttgaattcctcatactctctcttcattgctc 306
Query: 2573 tccgttctctaacaaagtttggcgccaccttgtctttcaggtagtctatcttctgttgga 2632
||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 305 tcctgtccctaacaaagtttggtaccaccttgtctttcaggtagtctatcttctgttgaa 246
Query: 2633 agtaccactctggagcacgaggctcaaggctatatcttttgcagaaaggaacccatttct 2692
||||||||||||||||||||||||||| || || | || |||||||||||||||||||
Sbjct: 245 agtaccactctggagcacgaggctcaatactgtacttcttacagaaaggaacccatttct 186
Query: 2693 ttgcaaattcagatgtttcagacaatgcttcaaatgtcagcatggcagcaccatcatcag 2752
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 185 ttgcaaattccgatgtttcagacaatccttcgaatgtcagcatggcagcaccatcatcag 126
Query: 2753 aaacgtagcacgaaaccttatcaactggataatccaccgaaaggatagatagaacagtat 2812
|||| ||||| || | ||| ||||| |||||||| || | ||||||||||| | ||| |
Sbjct: 125 aaacatagcaagagagcttgtcaaccggataatctacagccaggatagataggatagtgt 66
Query: 2813 tagcagtgaccaatggaggttccttcaagggatcaaccgtactgacaaagaaatc 2867
| || ||||| | ||||| ||||| |||||| || |||||||||||||||||
Sbjct: 65 ttgctgtgactagcggaggctccttagcgggatcgactgtactgacaaagaaatc 11
>gb|BG366351.1|BG366351 HVSMEi0006M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006M09f, mRNA sequence
Length = 557
Score = 359 bits (181), Expect = 5e-097
Identities = 373/437 (85%)
Strand = Plus / Minus
Query: 3430 atgtcatcgaccatctgtccgttggtgaggaggggaacattggggatgggctggaatggc 3489
||||||||| ||||||| || |||||||||||| | |||| ||| | ||||| || ||
Sbjct: 437 atgtcatcgcccatctggccattggtgaggaggcgcacatgcgggtttggctgaaagggt 378
Query: 3490 tgcggcacgccgtcgaggtcggcgccgcggccgtagctcatgtgggcgtggagcatggac 3549
|| |||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct: 377 tggtgcaccccgtcgaggtctccgccgcggccgtaggtcatgtgggcatggagcatggac 318
Query: 3550 tcggcgaggtactgggagtcgtgcttgtcgccccagttgaactcgttctccaggtcgtcg 3609
||| | |||||| ||||||| | |||| | |||||||||||||| ||| |||||||||
Sbjct: 317 tcgctggcgtactgagagtcgtccctgtccctccagttgaactcgtcctcgaggtcgtcg 258
Query: 3610 acgccgtcctcctcctcgtccccgggcacgcgcgcgcaccccttgaagcgcttgaagcgg 3669
|||||||||||||||| |||||||||||||||||||||||||||| ||||||| | | |
Sbjct: 257 gcgccgtcctcctcctcatccccgggcacgcgcgcgcaccccttgaggcgcttgtatctg 198
Query: 3670 gtcttgcactgggggcagttctgcgtgccctcgcggcgctcgtactcgtagcagtcccgg 3729
||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 197 gtcttgcactgtgggcagttctgggtgccctcgcgtcgctcgtactcgtagcagtcgcgg 138
Query: 3730 cagatggggaaggcgcactcgttgcaggccacgaaaggctccccgtcggggttgcgcccc 3789
|||| |||||||||||||||||||||||| ||||| || || ||| ||||| | |||||
Sbjct: 137 cagacggggaaggcgcactcgttgcaggcgacgaaggggtcgccgccggggccgagcccc 78
Query: 3790 acgtcgtcgccgcaaatctggcacacctggccgttccgctggtccatgggcttcggccct 3849
| |||||| ||||||||||||||| || || |||| |||| | || ||| ||| ||||
Sbjct: 77 aggtcgtccccgcaaatctggcacgccccgcggttctgctgcttcagcggcctcgcccct 18
Query: 3850 ggctcgccatcgcggcg 3866
||||| || ||||||||
Sbjct: 17 ggctccccgtcgcggcg 1
>gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K11
5-PRIME, mRNA sequence
Length = 586
Score = 357 bits (180), Expect = 2e-096
Identities = 330/380 (86%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 390 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 331
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 330 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 271
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccctggataccatccaaaccttt 2075
|||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 270 ccttctgaagacacatccagtaccaacatagatggggccttgaataccatccaaaccttt 211
Query: 2076 catgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccc 2135
|||||||||||| || ||||| || || |||| |||||||||||||| || |||||
Sbjct: 210 catgttgatatcaaagaagacgacgttcttgttggcatatcgatcatgacggtcaatgga 151
Query: 2136 atcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcat 2195
|| ||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 150 gtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaaggatccatcat 91
Query: 2196 aaaacacattgcttcctttatagccttactattattgatatagtgatcacaatccaagtt 2255
||||||||||||||||| | ||||| || || || | |||||||||||||||||||||
Sbjct: 90 gaaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaatccaagtt 31
Query: 2256 cagcaaataaggagcattag 2275
||||| || ||||||||||
Sbjct: 30 cagcatgtatggagcattag 11
Score = 139 bits (70), Expect = 8e-031
Identities = 124/142 (87%)
Strand = Plus / Minus
Query: 1697 caagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttccaacttctgtt 1756
||||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||
Sbjct: 586 caagaagtgtggatgcaacaaaaacggcagactggccaaatttcttctctagcttctgtt 527
Query: 1757 gatttacaatactagccttttcattttcagctcctggagcggcttcatcaatttcaccaa 1816
| |||||||||| |||||| | | |||||||||||| ||||||||||||||||||| ||
Sbjct: 526 ggtttacaataccagccttctgagtttcagctcctgcggcggcttcatcaatttcactaa 467
Query: 1817 gagcatatgcaggggcttgatt 1838
| || || ||||| | ||||||
Sbjct: 466 gtgcgtacgcaggtgattgatt 445
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 357 bits (180), Expect = 2e-096
Identities = 357/416 (85%)
Strand = Plus / Minus
Query: 727 acccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatcgttggc 786
||||| || ||||||| ||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 427 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 368
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||||||||| || | ||||||||||||||||||||| ||||| || ||||||||
Sbjct: 367 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 308
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgttgatcgca 906
|| || ||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 307 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 248
Query: 907 ttggaaatgccagctaccactccaatgaagttcagtaggagcagggttgtcggaggtatc 966
||||| |||||||| ||||| || ||||||||||| || |||||||| ||||| || |||
Sbjct: 247 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 188
Query: 967 agaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtctccgcccttg 1026
| | ||| |||||||||||||| |||||||| || |||||||| || |||||| ||||
Sbjct: 187 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 128
Query: 1027 gatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacaca 1086
| ||| || |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 127 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 68
Query: 1087 gcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccacca 1142
||||| ||||| | ||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 67 gcaaatagatgggcagagacacctccaatgacccagaactgctcgtttctccacca 12
>gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd25p02, mRNA sequence
Length = 349
Score = 353 bits (178), Expect = 3e-095
Identities = 307/349 (87%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 1345 gaaaacctttccaggaactttagtccaccaccatacccataccagagagggcagtggttg 1404
||||| ||||||| || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 348 gaaaatctttccaaaaatttcagtccaccaccatacccataccaaagagggcaatggttg 289
Query: 1405 ctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaa 1464
|||||||| || ||||| || ||||||||||||||||||||||||| ||||||||| |||
Sbjct: 288 ctgaagaagatctcaatagacccaagagcccaccgaagaacctggttaagacgatctgaa 229
Query: 1465 agattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgc 1524
||||||||||| || ||||| ||||| || | ||||||||| |||||||||||||| |||
Sbjct: 228 agattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcgc 169
Query: 1525 caaccatggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatc 1584
|| |||||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| |||
Sbjct: 168 cagccatggcaatgcatcttaaacccagttaggatatcctctgtaactgacccatagatc 109
Query: 1585 caaccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgtata 1644
|| ||||| |||||||||||| |||| ||||||||||| ||||| | ||||||||| |||
Sbjct: 108 cagccaatctcttttccccagtctgtcttgtcttcatagccacanccgatgacatggata 49
Query: 1645 gcttccttcagaagagaagctggactggcactcttcagggttccaccat 1693
|||||||||||||||||||| ||||| ||| | |||||||||||||||
Sbjct: 48 gcttccttcagaagagaagcaggactatcacac-tcagggttccaccat 1
>gb|CA020497.1|CA020497 HZ36H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36H21
5-PRIME, mRNA sequence
Length = 556
Score = 347 bits (175), Expect = 2e-093
Identities = 302/343 (88%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 1497 ccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaag 1556
||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct: 556 ccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatcttaaacccagttag 497
Query: 1557 aatatcttctgtgactgatcc-ataaatccaaccaatatcttttccccagcctgttttgt 1615
||||| ||||| ||||| || ||| ||||| ||||| |||||||||||| |||| ||||
Sbjct: 496 gatatcctctgtaactgaccccatagatccagccaatctcttttccccagtctgtcttgt 437
Query: 1616 cttcatatccacaactgatgacatgtatagcttccttcagaagagaagctggactggcac 1675
||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 436 cttcatagccacaaccgatgacatggatagcttccttcagaagagaagcaggactatcac 377
Query: 1676 tcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaa 1735
| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 376 acctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggcagactggccaa 317
Query: 1736 atttcttttccaacttctgttgatttacaatactagccttttcattttcagctcctggag 1795
||||||| || | ||||||||| |||||||||| |||||| | | |||||||||||| |
Sbjct: 316 atttcttctctagcttctgttggtttacaataccagccttctgagtttcagctcctgcgg 257
Query: 1796 cggcttcatcaatttcaccaagagcatatgcaggggcttgatt 1838
|||||||||||||||||| ||| || || ||||| | ||||||
Sbjct: 256 cggcttcatcaatttcactaagtgcgtacgcaggtgattgatt 214
Score = 180 bits (91), Expect = 2e-043
Identities = 142/159 (89%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 159 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 100
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 99 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 40
Query: 2016 ccttctgaagacacatccagtacccacataaattgggcc 2054
|||||||||||||||||||||||| ||||| || |||||
Sbjct: 39 ccttctgaagacacatccagtaccaacatagatggggcc 1
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 327 bits (165), Expect = 2e-087
Identities = 315/365 (86%)
Strand = Plus / Plus
Query: 778 atcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacg 837
||||| || |||||||||||||| || | ||||||||||||||||||||| ||||| ||
Sbjct: 210 atcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaaca 269
Query: 838 atcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttg 897
|||||||| || || ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 270 atcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttg 329
Query: 898 ttgatcgcattggaaatgccagctaccactccaatgaagttcagtaggagcagggttgtc 957
||||| || ||||| |||||||| ||||| || ||||||||||| || |||||||| |||
Sbjct: 330 ttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtc 389
Query: 958 ggaggtatcagaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
|| || |||| | ||| ||||||||||||||||||||||| || |||||||| || |||
Sbjct: 390 gggggaatcaacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatcatct 449
Query: 1018 ccgcccttggatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtccc 1077
||| |||| | ||| || |||||||| ||||| ||||||||||| |||||||| |||||
Sbjct: 450 ccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtcct 509
Query: 1078 tggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctc 1137
|||||||| ||||| ||||| | ||| || |||||||||||||| |||||||||||||||
Sbjct: 510 tggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgtttctc 569
Query: 1138 cacca 1142
|||||
Sbjct: 570 cacca 574
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 317 bits (160), Expect = 2e-084
Identities = 373/444 (84%)
Strand = Plus / Minus
Query: 654 ctcctagttgcaatccagaccacactcctccaacaggggaccatcatccttcgcaaggaa 713
||||||| |||| |||||||| |||||||||| || || || || ||| || |||||
Sbjct: 456 ctcctaggtgcagtccagaccgcactcctccagaagagggccgtcggtcttggcgaggaa 397
Query: 714 agggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaat 773
||||| | || ||||| || ||||||| ||||||||||| |||||||||||||| ||
Sbjct: 396 agggttcacacgcacccacaggagcgagatgatcgaagccaacaggatggaccagacgat 337
Query: 774 gacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatg 833
|| ||||| || |||||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 336 cacgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatg 277
Query: 834 gacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatcc 893
|| |||||||| || || ||||||||||||||||| || || |||||||||||||||||
Sbjct: 276 aacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattcatatcc 217
Query: 894 gttgttgatcgcattggaaatgccagctaccactccaatgaagttcagtaggagcagggt 953
||||||||| || ||||| |||||||| ||||| || ||||||||||| || ||||||||
Sbjct: 216 gttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagcagggt 157
Query: 954 tgtcggaggtatcagaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtc 1013
||||| || |||| | ||| ||||||||||||||||||||||| || |||||||| ||
Sbjct: 156 ggtcgggggaatcaacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatc 97
Query: 1014 gtctccgcccttggatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtag 1073
|||||| |||| | ||| || |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 96 atctccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttgagaag 37
Query: 1074 tccctggaacacagcaaagagatg 1097
||| |||||||| ||||| |||||
Sbjct: 36 tccttggaacacggcaaatagatg 13
>gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_O01 5', mRNA sequence
Length = 401
Score = 313 bits (158), Expect = 2e-083
Identities = 332/390 (85%)
Strand = Plus / Minus
Query: 1164 ccatctcatttccaggatgctcgtagcaaaaatgcagatgaaaagtgacatgaaccacag 1223
||||||||||||||| || | |||||| |||||||||||||||||||||||| |||| |
Sbjct: 392 ccatctcatttccagaatacccgtagcgaaaatgcagatgaaaagtgacatgtaccagat 333
Query: 1224 gctggcaacattgttaagctctggcgtgataaatttccctgtcagcaagcagatggcagg 1283
||||||| ||| |||||||||| ||||| || || || || | ||||||||| || ||
Sbjct: 332 actggcaaggttgctaagctctggagtgatgaacttgcccgttaacaagcagatagcggg 273
Query: 1284 caatgtgcaataggccaagagcgggatagatgtccaagggtatacgatggagttaatgta 1343
||| || || || |||| || || || || |||||||| || || |||||||| |||||
Sbjct: 272 caacgtacagtaagccagaagtggaatggaggtccaaggatagacaatggagttgatgta 213
Query: 1344 cgaaaacctttccaggaactttagtccaccaccatacccataccagagagggcagtggtt 1403
||||| ||||||| || || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 212 ggaaaatctttccaaaaatttcagtccaccaccatacccataccaaagagggcaatggtt 153
Query: 1404 gctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcgga 1463
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||| ||
Sbjct: 152 gctgaagaagatctcaatagacccaagagcccaccgaagaacctggttaagacgatctga 93
Query: 1464 aagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccg 1523
|||||||||||| || ||||| ||||| || | ||||||||| |||||||||||||| ||
Sbjct: 92 aagattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcg 33
Query: 1524 ccaaccatggcagtgcatcttaaacccagt 1553
||| |||||||| |||||||||||||||||
Sbjct: 32 ccagccatggcaatgcatcttaaacccagt 3
>gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007M11f, mRNA sequence
Length = 693
Score = 305 bits (154), Expect = 6e-081
Identities = 277/318 (87%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 349 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 290
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||| ||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 289 gttacaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 230
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccctggataccatccaaaccttt 2075
|||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 229 ccttctgaagacacatccagtaccaacatagatggggccttgaataccatccaaaccttt 170
Query: 2076 catgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccc 2135
|||||||||||| || ||||| || || |||| ||||||||||| || || |||||
Sbjct: 169 catgttgatatcaaagaagacgacgttcttgttggcatatcgatcgtgacggtcaatgga 110
Query: 2136 atcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcat 2195
|| ||||||||||| ||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 109 gtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaaggatccatcat 50
Query: 2196 aaaacacattgcttcctt 2213
|||||||||||||||||
Sbjct: 49 gaaacacattgcttcctt 32
Score = 289 bits (146), Expect = 3e-076
Identities = 254/290 (87%)
Strand = Plus / Minus
Query: 1549 ccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcct 1608
||||| || ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| ||
Sbjct: 693 ccagttaggatatcctctgtaactgacccatagatccagccaatctcttttccccagtct 634
Query: 1609 gttttgtcttcatatccacaactgatgacatgtatagcttccttcagaagagaagctgga 1668
|| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct: 633 gtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagagaagcagga 574
Query: 1669 ctggcactcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactgaagac 1728
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 573 ctatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggcagac 514
Query: 1729 tggccaaatttcttttccaacttctgttgatttacaatactagccttttcattttcagct 1788
|||||||||||||| || | ||||||||| |||||||||| |||||| | | ||||||||
Sbjct: 513 tggccaaatttcttctctagcttctgttggtttacaataccagccttctgagtttcagct 454
Query: 1789 cctggagcggcttcatcaatttcaccaagagcatatgcaggggcttgatt 1838
|||| ||||||||||||||||||| ||| || || ||||| | ||||||
Sbjct: 453 cctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgatt 404
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 303 bits (153), Expect = 2e-080
Identities = 330/389 (84%)
Strand = Plus / Minus
Query: 727 acccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatcgttggc 786
||||| || ||||||| ||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 405 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 346
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||||||||| || | ||||||||||||||||||||| ||||| || ||||||||
Sbjct: 345 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 286
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgttgatcgca 906
|| || ||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 285 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 226
Query: 907 ttggaaatgccagctaccactccaatgaagttcagtaggagcagggttgtcggaggtatc 966
||||| |||||||| ||||| || ||||||||||| || |||||||| |||| | |||
Sbjct: 225 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgccgccatc 166
Query: 967 agaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtctccgcccttg 1026
| | ||| ||||||||||||||||||||||| || |||||||| || |||||| ||||
Sbjct: 165 aacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatcatctccggccttt 106
Query: 1027 gatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacaca 1086
| ||| || |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 105 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 46
Query: 1087 gcaaagagatgtgaagacacgcctccaat 1115
||||| ||||| | ||| || ||||||||
Sbjct: 45 gcaaatagatgggcagagacacctccaat 17
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 301 bits (152), Expect = 9e-080
Identities = 356/424 (83%)
Strand = Plus / Minus
Query: 654 ctcctagttgcaatccagaccacactcctccaacaggggaccatcatccttcgcaaggaa 713
||||||| |||| |||||||| |||||||||| || || || || ||| || |||||
Sbjct: 424 ctcctaggtgcagtccagaccgcactcctccagaagagggccgtcggtcttggcgaggaa 365
Query: 714 agggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaat 773
||||| | || ||||| || ||||||| ||||||||||| |||||||||||||| ||
Sbjct: 364 agggttcacacgcacccacaggagcgagatgatcgaagccaacaggatggaccagacgat 305
Query: 774 gacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatg 833
|| ||||| || |||||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 304 cacgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatg 245
Query: 834 gacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatcc 893
|| |||||||| || || ||||||||||||||||| || || |||||||||||||||||
Sbjct: 244 aacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattcatatcc 185
Query: 894 gttgttgatcgcattggaaatgccagctaccactccaatgaagttcagtaggagcagggt 953
||||||||| || ||||| |||||||| ||||| || ||||||||||| || ||||||||
Sbjct: 184 gttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagcagggt 125
Query: 954 tgtcggaggtatcagaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtc 1013
||||| || |||| | ||| ||||||||||||||||||||||| || |||||||| ||
Sbjct: 124 ggtcgggggaatcaacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatc 65
Query: 1014 gtctccgcccttggatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtag 1073
|||||| |||| | ||| || |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 64 atctccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttgagaag 5
Query: 1074 tccc 1077
||||
Sbjct: 4 tccc 1
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 289 bits (146), Expect = 3e-076
Identities = 299/350 (85%)
Strand = Plus / Minus
Query: 727 acccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatcgttggc 786
||||| || ||||||| ||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 354 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 295
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||||||||| || | ||||||||||||||||||||| ||||| || ||||||||
Sbjct: 294 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 235
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgttgatcgca 906
|| || ||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 234 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 175
Query: 907 ttggaaatgccagctaccactccaatgaagttcagtaggagcagggttgtcggaggtatc 966
||||| |||||||| ||||| || ||||||||||| || |||||||| ||||| || |||
Sbjct: 174 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 115
Query: 967 agaagggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtctccgcccttg 1026
| | ||| |||||||||||||| |||||||| || |||||||| || |||||| ||||
Sbjct: 114 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 55
Query: 1027 gatgtcacagtgaagctcgtgtctacaccagctatgaccttgagtagtcc 1076
| ||| || |||||||| ||||| ||||||||||| |||||||| |||||
Sbjct: 54 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtcc 5
>gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd18j24, mRNA sequence
Length = 548
Score = 285 bits (144), Expect = 5e-075
Identities = 306/360 (85%)
Strand = Plus / Minus
Query: 2841 gggatcaaccgtactgacaaagaaatcaacaggggcgagttgagaaggatgcccttcctt 2900
|||||| || |||||||||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 490 gggatcgactgtactgacaaagaaatcaactggggcgagttgagatggctggccttcctt 431
Query: 2901 gtcaaaccttaaactcagccggtcaagataggtttccctctcgataggaaaccactttgg 2960
||| ||||| || ||| ||||||||| || || |||||||| |||||||||||||| ||
Sbjct: 430 gtcgaacctcaatgtcaaccggtcaaggtaagtctccctctcaataggaaaccacttggg 371
Query: 2961 aaactggtcaagaatccaagacatggcaaaccaaatttcacagatcacagatatgagcca 3020
|| || || ||||||||||||||||||||||| || || || || ||||||||||||||
Sbjct: 370 gaattgatcgagaatccaagacatggcaaaccatatctcgcatatgacagatatgagcca 311
Query: 3021 taaagcaaatgcatcaggcaccggatgcatcactcggtagtggaagaagaaacacaaaac 3080
||| ||||||||||| ||||||||||||| || |||||||||||||||| ||||| ||
Sbjct: 310 caaaacaaatgcatcatgcaccggatgcatgacacggtagtggaagaagagacacacaat 251
Query: 3081 cactagccgaattattataatcatcctataggggttgatttggcttgaaggaagcgggat 3140
||| | || || | || |||||||| || || || || |||||||||||| || |
Sbjct: 250 caccaaacggatcacaatgatcatcctgtaaggattaatcaggcttgaaggaatgggaac 191
Query: 3141 ctttctggacaatggctgtctagcttcatccattagtggtagatctgcatcatcaccatc 3200
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 190 ctttctggacagtggctgtctagcttcatccattagtggtagatctgcatcgtcgccatc 131
Score = 111 bits (56), Expect = 2e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 3208 ccgccatcgttcctcgtctggtgcatcctctcctgcttctgcttccagctctccatcctc 3267
|||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 114 ccgccatcattcctggtctgatgcagcctctcctgcttctgcttccagctctccatcctc 55
Query: 3268 tccttccatgctacgctccc 3287
|||||||| || ||||||||
Sbjct: 54 tccttccaggcgacgctccc 35
>gb|BI957138.1|BI957138 HVSMEn0007L07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0007L07f,
mRNA sequence
Length = 618
Score = 281 bits (142), Expect = 8e-074
Identities = 348/414 (84%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 1427 caagagcccaccgaagaacctggtgaagacgatcggaaaga-ttgagaggtgcggaacct 1485
||||||||||||||| || ||||| |||| ||||||||||| || ||||| || ||||||
Sbjct: 575 caagagcccaccgaacaaactggttaagatgatcggaaagaattaagaggggcagaacct 516
Query: 1486 ttgaaggcggcccgtttaggtatgcagtaaattgaccg-ccaaccatggcagtgcatctt 1544
|| || || | ||| |||| |||||| |||||| | ||| | |||||| |||||||
Sbjct: 515 ttaaatgcaggccgcttagcaatgcaggtaattgaatggccagctatggcaaggcatctt 456
Query: 1545 aaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttcccca 1604
||||||||| || ||||| ||||| | ||| ||||| ||||| ||||| |||||||| ||
Sbjct: 455 aaacccagttaggatatcctctgtaattgagccatagatccagccaatctcttttccgca 396
Query: 1605 gcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcagaagagaagc 1664
| |||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 395 gtctgtgttgtcttcatagccacaaccgatgacatggatagcttcgttcagaagagaagc 336
Query: 1665 tggactggcactcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactga 1724
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 335 aggactatcacacgtcagggttccaccattctcaagaagtgtggatgcaacaaaaacggc 276
Query: 1725 agactggccaaatttcttttccaacttctgttgatttacaatactagccttttcattttc 1784
||||||||| |||||||| || | ||| ||||| |||||||||| ||| || | | ||||
Sbjct: 275 agactggccgaatttcttctctagcttgtgttggtttacaataccagctttctgagtttc 216
Query: 1785 agctcctggagcggcttcatcaatttcaccaagagcatatgcaggggcttgatt 1838
|||||||| ||||||||||||||||||| ||| || || ||||| | ||||||
Sbjct: 215 agctcctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgatt 162
>gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. vulgare cDNA clone HX10O05
5-PRIME, mRNA sequence
Length = 295
Score = 270 bits (136), Expect = 3e-070
Identities = 257/296 (86%), Gaps = 1/296 (0%)
Strand = Plus / Minus
Query: 2030 atccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcga 2089
|||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| |
Sbjct: 295 atccagtaccaacatagatggggccttgaataccatccaaacctttcatgttgatatcaa 236
Query: 2090 aaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttgag 2149
| ||||| || || |||| |||||||||||||| || ||||| || ||||||||||
Sbjct: 235 agaagacgacgttcttgttggcatatcgatcatgacggtcaatggagtcgaatctttgag 176
Query: 2150 gaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgctt 2209
| ||||||||||| ||||| |||||||| | ||||||||||||||| |||||||||||||
Sbjct: 175 ggaactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgctt 116
Query: 2210 cctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataaggag 2269
|||| | ||||| || || || | |||||||||||||||||||||||||| | | |||
Sbjct: 115 ccttgactgccttgctgttgttcacatagtgatcacaatccaagttcagcatgt-atgag 57
Query: 2270 cattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttg 2325
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 56 cattagttagtacagcagagacccggaccaatgcgttcatagcaccagccttcttg 1
>gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30j03 5', mRNA sequence
Length = 364
Score = 240 bits (121), Expect = 3e-061
Identities = 199/225 (88%)
Strand = Plus / Minus
Query: 1896 cttcttcttggtcttcctgttaccaaaacagcaacagcaaatgcaccactttggccagca 1955
|||||||||| ||||||||||||| || ||| ||||||| | |||||||||||||||||
Sbjct: 272 cttcttcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagca 213
Query: 1956 gttgcaagttcttgatggtggcttctttgttttgggagcatcgtagccatataatgcctg 2015
||||||||| ||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct: 212 gttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctg 153
Query: 2016 ccttctgaagacacatccagtacccacataaattgggccctggataccatccaaaccttt 2075
|||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 152 ccttctgaagacacatccagtaccaacatagatggggccttgaataccatccaaaccttt 93
Query: 2076 catgttgatatcgaaaaagacaacatttctgttagcatatcgatc 2120
|||||||||||| || ||||| || || |||| |||||||||||
Sbjct: 92 catgttgatatcaaagaagacgacgttcttgttggcatatcgatc 48
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 218 bits (110), Expect = 1e-054
Identities = 257/306 (83%)
Strand = Plus / Minus
Query: 654 ctcctagttgcaatccagaccacactcctccaacaggggaccatcatccttcgcaaggaa 713
||||||| |||| |||||||| |||||||||| || || || || ||| || |||||
Sbjct: 315 ctcctaggtgcagtccagaccgcactcctccagaagagggccgtcggtcttggcgaggaa 256
Query: 714 agggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaat 773
||||| | || ||||| || ||||||| ||||||||||| |||||||||||||| ||
Sbjct: 255 agggttcacacgcacccacaggagcgagatgatcgaagccaacaggatggaccagacgat 196
Query: 774 gacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatg 833
|| ||||| || |||||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 195 cacgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatg 136
Query: 834 gacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatcc 893
|| |||||||| || || ||||||||||||||||| || || |||||||||||||||||
Sbjct: 135 aacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattcatatcc 76
Query: 894 gttgttgatcgcattggaaatgccagctaccactccaatgaagttcagtaggagcagggt 953
||||||||| || ||||| |||||||| ||||| || ||||||||||| || ||||||||
Sbjct: 75 gttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagcagggt 16
Query: 954 tgtcgg 959
|||||
Sbjct: 15 ggtcgg 10
>gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21V 5', mRNA sequence
Length = 499
Score = 135 bits (68), Expect = 1e-029
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 357 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 298
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 297 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 238
Query: 1656 aagagaagctgg 1667
|||||||||||
Sbjct: 237 tagagaagctgg 226
>gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006J03f, mRNA sequence
Length = 848
Score = 135 bits (68), Expect = 1e-029
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 454 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 395
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 394 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 335
Query: 1656 aagagaagctgg 1667
|||||||||||
Sbjct: 334 tagagaagctgg 323
>gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004C10f, mRNA sequence
Length = 636
Score = 135 bits (68), Expect = 1e-029
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 237 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 178
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 177 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 118
Query: 1656 aagagaagctgg 1667
|||||||||||
Sbjct: 117 tagagaagctgg 106
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 135 bits (68), Expect = 1e-029
Identities = 179/216 (82%)
Strand = Plus / Minus
Query: 654 ctcctagttgcaatccagaccacactcctccaacaggggaccatcatccttcgcaaggaa 713
||||||| |||| |||||||| |||||||||| || || || || ||| || |||||
Sbjct: 218 ctcctaggtgcagtccagaccgcactcctccagaagagggccgtcggtcttggcgaggaa 159
Query: 714 agggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaat 773
||||| | || ||||| || ||||||| ||||||||||| |||||||||||||| ||
Sbjct: 158 agggttcacacgcacccacaggagcgagatgatcgaagccaacaggatggaccagacgat 99
Query: 774 gacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatg 833
|| ||||| || |||||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 98 cacgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatg 39
Query: 834 gacgatcacccaaaatgcaaagaagagcttcccgaa 869
|| |||||||| || || |||||||||||||||||
Sbjct: 38 aacaatcacccagaacgcgaagaagagcttcccgaa 3
>gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
5-PRIME, mRNA sequence
Length = 523
Score = 135 bits (68), Expect = 1e-029
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 399 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 340
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 339 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 280
Query: 1656 aagagaagctgg 1667
|||||||||||
Sbjct: 279 tagagaagctgg 268
>gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. vulgare cDNA clone HB01H14
5-PRIME, mRNA sequence
Length = 586
Score = 135 bits (68), Expect = 1e-029
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 296 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 237
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 236 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 177
Query: 1656 aagagaagctgg 1667
|||||||||||
Sbjct: 176 tagagaagctgg 165
>gb|CA027985.1|CA027985 HZ60K07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60K07
5-PRIME, mRNA sequence
Length = 159
Score = 135 bits (68), Expect = 1e-029
Identities = 107/120 (89%)
Strand = Plus / Minus
Query: 3694 gtgccctcgcggcgctcgtactcgtagcagtcccggcagatggggaaggcgcactcgttg 3753
||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 155 gtgccctcgcgtcgctcgtactcgtagcagtcgcggcagacggggaaggcgcactcgttg 96
Query: 3754 caggccacgaaaggctccccgtcggggttgcgccccacgtcgtcgccgcaaatctggcac 3813
||||| ||||| || || ||| ||||| | |||||| |||||| |||||||||||||||
Sbjct: 95 caggcgacgaaggggtcgccgccggggccgagccccaggtcgtccccgcaaatctggcac 36
>gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007D23f, mRNA sequence
Length = 786
Score = 127 bits (64), Expect = 3e-027
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 337 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 278
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 277 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 218
Query: 1656 aagagaagctgg 1667
|| ||||||||
Sbjct: 217 tagggaagctgg 206
Score = 79.8 bits (40), Expect = 6e-013
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 1117 acccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatc 1168
||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 758 acccagaactgctcgtttctccaccagtcctcgatgccgacaccactccatc 707
Score = 42.1 bits (21), Expect = 0.14
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaac 1445
|||||||| ||| |||||||||||||| |||||
Sbjct: 460 aatttcaactgacccaagagcccaccggagaac 428
>gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0011E15f, mRNA sequence
Length = 807
Score = 127 bits (64), Expect = 3e-027
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct: 145 gtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaatctc 86
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcag 1655
||||||||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 85 ttttccccattcggttttgtcctcatatccacagctgatgacatggatggcttcctttag 26
Query: 1656 aagagaagctgg 1667
|| ||||||||
Sbjct: 25 tagggaagctgg 14
Score = 67.9 bits (34), Expect = 2e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 1122 aaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
||||||||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 559 aaactgctcgtttctcccccagtcctcgatgccgacaccactccat 514
Score = 42.1 bits (21), Expect = 0.14
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaac 1445
|||||||| ||| |||||||||||||| |||||
Sbjct: 268 aatttcaactgacccaagagcccaccggagaac 236
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 119 bits (60), Expect = 7e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 715 gggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatg 774
|||||||||| |||||||||||| ||||| || || || || || | |||||| | |||
Sbjct: 221 gggtcgatcctgacccaaagcagggagaacatggaggctagcagcacggaccatatgatg 280
Query: 775 acaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatgg 834
||||| || |||||||||||||||||||| | | |||||||||||||||||| |||||
Sbjct: 281 acaatggtgggcgtcctgttctgcctccccatgaaacccttgaggaacgggtagagatgc 340
Query: 835 acgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatccg 894
||||||||||| || || ||||||||||| ||||| || || ||||| || | || |||
Sbjct: 341 acgatcacccagaaggcgaagaagagcttaccgaatagcggcccccacgactggtacccg 400
Query: 895 ttgttgat 902
||||||||
Sbjct: 401 ttgttgat 408
>gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16h09 5', mRNA sequence
Length = 633
Score = 119 bits (60), Expect = 7e-025
Identities = 171/208 (82%)
Strand = Plus / Minus
Query: 654 ctcctagttgcaatccagaccacactcctccaacaggggaccatcatccttcgcaaggaa 713
||||||| |||| |||||||| |||||||||| || || || || ||| || |||||
Sbjct: 209 ctcctaggtgcagtccagaccgcactcctccagaagagggccgtcggtcttggcgaggaa 150
Query: 714 agggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaat 773
||||| | || ||||| || ||||||| ||||||||||| |||||||||||||| ||
Sbjct: 149 agggttcacacgcacccacaggagcgagatgatcgaagccaacaggatggaccagacgat 90
Query: 774 gacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatg 833
|| ||||| || |||||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 89 cacgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatg 30
Query: 834 gacgatcacccaaaatgcaaagaagagc 861
|| |||||||| || || |||||||||
Sbjct: 29 aacaatcacccagaacgcgaagaagagc 2
>gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0024F09f, mRNA sequence
Length = 900
Score = 117 bits (59), Expect = 3e-024
Identities = 211/259 (81%), Gaps = 2/259 (0%)
Strand = Plus / Minus
Query: 1404 gctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcgga 1463
|||||| | |||||||| ||||||||||||||||| || || |||| |||||||| ||
Sbjct: 275 gctgaaaagaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctga 216
Query: 1464 aagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccg 1523
|||||||| || || || || ||||| || | || ||||| ||||| || | ||||||
Sbjct: 215 aagattgatgggggcagatcccttgaaagctgggcgcttaggcatgcaatagactgaccg 156
Query: 1524 ccaacca-tggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaa 1582
||| || | || ||||||||| || ||||| ||||||||||||||||| ||||||||||
Sbjct: 155 ccagcctcttgc-gtgcatcttgaatccagtgagaatatcttctgtgacagatccataaa 97
Query: 1583 tccaaccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgta 1642
|||||||||| || ||||||| | | ||||| ||||| |||||||| |||||||| |
Sbjct: 96 tccaaccaatctcagttccccactcagacttgtcctcatagccacaacttatgacatgga 37
Query: 1643 tagcttccttcagaagaga 1661
||||||| |||| ||||||
Sbjct: 36 tagcttctttcaaaagaga 18
>gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 5', mRNA sequence
Length = 615
Score = 117 bits (59), Expect = 3e-024
Identities = 211/259 (81%), Gaps = 2/259 (0%)
Strand = Plus / Minus
Query: 1404 gctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcgga 1463
|||||| | |||||||| ||||||||||||||||| || || |||| |||||||| ||
Sbjct: 274 gctgaaaagaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctga 215
Query: 1464 aagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccg 1523
|||||||| || || || || ||||| || | || ||||| ||||| || | ||||||
Sbjct: 214 aagattgatgggggcagatcccttgaaagctgggcgcttaggcatgcaatagactgaccg 155
Query: 1524 ccaacca-tggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaa 1582
||| || | || ||||||||| || ||||| ||||||||||||||||| ||||||||||
Sbjct: 154 ccagcctcttgc-gtgcatcttgaatccagtgagaatatcttctgtgacagatccataaa 96
Query: 1583 tccaaccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgta 1642
|||||||||| || ||||||| | | ||||| ||||| |||||||| |||||||| |
Sbjct: 95 tccaaccaatctcagttccccactcagacttgtcctcatagccacaacttatgacatgga 36
Query: 1643 tagcttccttcagaagaga 1661
||||||| |||| ||||||
Sbjct: 35 tagcttctttcaaaagaga 17
Score = 60.0 bits (30), Expect = 6e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||||||||| ||||| || || |||||||| || || ||||| |||||||||||
Sbjct: 570 cctccaatgacccagaactgttcattcctccaccactcgtcaatgccaacaccactccac 511
Query: 1168 ctcatttccaggat 1181
||||| || |||||
Sbjct: 510 ctcatctcaaggat 497
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1063 accttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaa 1122
|||||||| || ||||||||||| || || ||||| | |||| ||| ||||||||||||
Sbjct: 241 accttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaa 182
Query: 1123 aactgctcgtttctccaccagtcatcgatgcctacaccactccatc 1168
||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 181 aactgctcgtttctccaccagtcctcgatgccgacaccactccatc 136
Score = 87.7 bits (44), Expect = 3e-015
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 711 gaaagggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagac 770
||||||||||||| ||||| || || |||||||| || || |||||||| ||||| ||
Sbjct: 596 gaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaaac 537
Query: 771 aatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaag 830
||||| || || ||||| | ||||||| |||| | |||||||||||||| ||||| ||
Sbjct: 536 gatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagag 477
Query: 831 atggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatgatt 886
||||| ||||||||| | || ||||||||||| || || || |||||||| ||||
Sbjct: 476 atggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggatt 421
>gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017G02f, mRNA sequence
Length = 812
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1063 accttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaa 1122
|||||||| || ||||||||||| || || ||||| | |||| ||| ||||||||||||
Sbjct: 510 accttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaa 451
Query: 1123 aactgctcgtttctccaccagtcatcgatgcctacaccactccatc 1168
||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 450 aactgctcgtttctccaccagtcctcgatgccgacaccactccatc 405
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttc 1565
|||||| |||||||||||||||||||||||
Sbjct: 37 gtgcattttaaacccagtaagaatatcttc 8
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 436,237
Number of Sequences: 312970
Number of extensions: 436237
Number of successful extensions: 124179
Number of sequences better than 0.5: 179
Number of HSP's better than 0.5 without gapping: 171
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 123688
Number of HSP's gapped (non-prelim): 451
length of query: 3878
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3858
effective length of database: 168,875,139
effective search space: 651520286262
effective search space used: 651520286262
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)