BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.15
(797 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 109 1e-022
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 109 1e-022
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 107 6e-022
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 105 2e-021
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 105 2e-021
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 105 2e-021
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 105 2e-021
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 105 2e-021
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 101 3e-020
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 101 3e-020
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 100 1e-019
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 98 5e-019
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 94 8e-018
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 94 8e-018
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 94 8e-018
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 94 8e-018
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 94 8e-018
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 86 2e-015
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 74 8e-012
gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. v... 74 8e-012
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 72 3e-011
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 60 1e-007
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 58 5e-007
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 58 5e-007
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 58 5e-007
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 58 5e-007
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 58 5e-007
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 58 5e-007
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 58 5e-007
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 58 5e-007
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 58 5e-007
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 58 5e-007
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 58 5e-007
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 58 5e-007
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 58 5e-007
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 58 5e-007
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 58 5e-007
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 58 5e-007
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 58 5e-007
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 58 5e-007
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 58 5e-007
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 58 5e-007
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 58 5e-007
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 54 7e-006
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 54 7e-006
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 54 7e-006
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 54 7e-006
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 54 7e-006
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 54 7e-006
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 54 7e-006
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 54 7e-006
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 54 7e-006
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 54 7e-006
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 54 7e-006
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 54 7e-006
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 54 7e-006
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 52 3e-005
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 52 3e-005
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 52 3e-005
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 52 3e-005
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 52 3e-005
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 52 3e-005
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 52 3e-005
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 52 3e-005
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 52 3e-005
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 52 3e-005
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 52 3e-005
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 52 3e-005
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 52 3e-005
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 50 1e-004
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 50 1e-004
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 50 1e-004
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 48 4e-004
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 48 4e-004
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 46 0.002
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 46 0.002
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 46 0.002
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 46 0.002
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 44 0.007
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 44 0.007
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 44 0.007
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 44 0.007
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 44 0.007
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 44 0.007
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 44 0.007
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 44 0.007
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 42 0.027
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 42 0.027
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 42 0.027
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 42 0.027
gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. v... 42 0.027
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 42 0.027
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 42 0.027
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 42 0.027
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 42 0.027
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 40 0.11
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 40 0.11
gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachi... 40 0.11
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 40 0.11
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 40 0.11
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 40 0.11
gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DA... 40 0.11
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 40 0.11
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 40 0.11
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 40 0.11
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 40 0.11
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 40 0.11
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 40 0.11
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 40 0.11
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 40 0.11
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 40 0.11
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 40 0.11
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 40 0.11
gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, dro... 40 0.11
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 40 0.11
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 40 0.11
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 38 0.43
gb|BI954215.1|BI954215 HVSMEm0016K09f Hordeum vulgare green... 38 0.43
gb|BI956518.1|BI956518 HVSMEn0003O09f Hordeum vulgare rachi... 38 0.43
gb|BI957226.1|BI957226 HVSMEn0008D17f Hordeum vulgare rachi... 38 0.43
gb|BI958795.1|BI958795 HVSMEn0016K11f Hordeum vulgare rachi... 38 0.43
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 38 0.43
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 38 0.43
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 38 0.43
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 38 0.43
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 38 0.43
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 38 0.43
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 38 0.43
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 38 0.43
>gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
3-PRIME, mRNA sequence
Length = 520
Score = 109 bits (55), Expect = 1e-022
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 383 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctctatccgc 442
|||||||||||||||||| |||| ||||| ||| |||||| ||||||||| ||||||
Sbjct: 356 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttctccatccgc 297
Query: 443 ctcaccagcgagtccggcaagaaggtcatcgctaaagacatcatcccggcgaactggaga 502
|||||||||||||||||||||||| ||||||| | ||| ||||||| || |||||||
Sbjct: 296 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccccgccaactggaag 237
Query: 503 cccgatgccgtctac 517
||||| ||||||||
Sbjct: 236 cccgacaccgtctac 222
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 251 ttccacatcgagaagggctgcaaccccaactacctggccgtgctggtgaagtttgtggcg 310
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 491 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 432
Query: 311 gacgatggcgacatcgtgctgatggaaatccagga 345
||||| ||||||||||||| |||||| || |||||
Sbjct: 431 gacgacggcgacatcgtgcagatggagattcagga 397
>gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G06
3-PRIME, mRNA sequence
Length = 588
Score = 109 bits (55), Expect = 1e-022
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 383 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctctatccgc 442
|||||||||||||||||| |||| ||||| ||| |||||| ||||||||| ||||||
Sbjct: 357 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttctccatccgc 298
Query: 443 ctcaccagcgagtccggcaagaaggtcatcgctaaagacatcatcccggcgaactggaga 502
|||||||||||||||||||||||| ||||||| | ||| ||||||| || |||||||
Sbjct: 297 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccccgccaactggaag 238
Query: 503 cccgatgccgtctac 517
||||| ||||||||
Sbjct: 237 cccgacaccgtctac 223
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 251 ttccacatcgagaagggctgcaaccccaactacctggccgtgctggtgaagtttgtggcg 310
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 492 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 433
Query: 311 gacgatggcgacatcgtgctgatggaaatccagga 345
||||| ||||||||||||| |||||| || |||||
Sbjct: 432 gacgacggcgacatcgtgcagatggagattcagga 398
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 107 bits (54), Expect = 6e-022
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 78 tcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaagg 137
||||||| |||||||||||| | || | || ||||||||||||||| | ||||||| ||
Sbjct: 5 tcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacgg 64
Query: 138 ccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgg 197
| |||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| |
Sbjct: 65 cgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcg 124
Query: 198 acgtcgagttcagaagggtgcggtgc 223
|| ||||||||| | |||||| ||||
Sbjct: 125 acatcgagttcacacgggtgccgtgc 150
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| ||| |
Sbjct: 427 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctgacc 486
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||| |||||| || ||||||||| |||||||||||| ||| ||||||| ||||
Sbjct: 487 ggcacggcgttcggcaggctcgcaaagccccggctcaacgacaggctccgccactccggc 546
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| ||||||||| | |||||| ||||
Sbjct: 547 atcatcgacatcgagttcacacgggtgccgtgc 579
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| |||| || |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 425 acggtgatcattaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 484
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||| |||||| || |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 485 ggcacggcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggc 544
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| ||||||||| | |||||| ||||
Sbjct: 545 atcatcgacatcgagttcacacgggtgccgtgc 577
>gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H04 5', mRNA sequence
Length = 612
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 407 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 466
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| || |||||| || |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 467 ggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggc 526
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| ||||||||| | |||||| ||||
Sbjct: 527 atcatcgacatcgagttcacacgggtgccgtgc 559
>gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01B01
3-PRIME, mRNA sequence
Length = 574
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 421 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 480
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| || |||||| || |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 481 ggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggc 540
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| ||||||||| | |||||| ||||
Sbjct: 541 atcatcgacatcgagttcacacgggtgccgtgc 573
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 115 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 174
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| || |||||| || |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 175 ggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggc 234
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| ||||||||| | |||||| ||||
Sbjct: 235 atcatcgacatcgagttcacacgggtgccgtgc 267
>gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
3-PRIME, mRNA sequence
Length = 545
Score = 101 bits (51), Expect = 3e-020
Identities = 114/135 (84%)
Strand = Plus / Minus
Query: 383 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctctatccgc 442
|||||||||||||||||| |||| ||||| ||| |||||| |||||| || ||||||
Sbjct: 367 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttttccatccgc 308
Query: 443 ctcaccagcgagtccggcaagaaggtcatcgctaaagacatcatcccggcgaactggaga 502
|||||||||||||||||||||||| ||||||| | ||| ||||||| || |||||||
Sbjct: 307 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccccgccaactggaag 248
Query: 503 cccgatgccgtctac 517
||||| ||||||||
Sbjct: 247 cccgacaccgtctac 233
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 251 ttccacatcgagaagggctgcaaccccaactacctggccgtgctggtgaagtttgtggcg 310
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 502 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 443
Query: 311 gacgatggcgacatcgtgctgatggaaatccagga 345
||||| ||||||||||||| |||||| || |||||
Sbjct: 442 gacgacggcgacatcgtgcagatggagattcagga 408
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 101 bits (51), Expect = 3e-020
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 357 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 416
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| || |||||| || |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 417 ggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggc 476
Query: 191 atcatggacgtcgagttca 209
||||| ||| |||||||||
Sbjct: 477 atcatcgacatcgagttca 495
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 99.6 bits (50), Expect = 1e-019
Identities = 116/138 (84%)
Strand = Plus / Plus
Query: 86 gacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggccttcggc 145
|||||||||||| | || | || ||||||||||||||| | ||||||| ||| ||||||
Sbjct: 2 gacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcggc 61
Query: 146 tccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgag 205
|| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||
Sbjct: 62 aggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcgag 121
Query: 206 ttcagaagggtgcggtgc 223
|||| | |||||| ||||
Sbjct: 122 ttcacacgggtgccgtgc 139
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 97.6 bits (49), Expect = 5e-019
Identities = 127/153 (83%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 413 acggtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagc 472
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||| |||||| || |||||||||||||||||||||| ||| || |||| ||||
Sbjct: 473 ggcacggcgttcggcaggctcgcaaagcccgggctcaacgacaggctccggcactccggc 532
Query: 191 atcatggacgtcgagttcagaagggtgcggtgc 223
||||| ||| |||| |||| | |||||| ||||
Sbjct: 533 atcatcgacatcgaattcacacgggtgccgtgc 565
>gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped genomic sequences from PCR
products Hordeum vulgare subsp. vulgare genomic, DNA
sequence
Length = 499
Score = 93.7 bits (47), Expect = 8e-018
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 185 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 126
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 125 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 66
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || ||||||| ||||||| ||||||
Sbjct: 65 atcatcgacatccagttcaggagggtgccgtgcaa 31
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 93.7 bits (47), Expect = 8e-018
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 402 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 461
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 462 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 521
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || ||||||| ||||||| ||||||
Sbjct: 522 atcatcgacatccagttcaggagggtgccgtgcaa 556
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 93.7 bits (47), Expect = 8e-018
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 424 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 483
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 484 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 543
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || ||||||| ||||||| ||||||
Sbjct: 544 atcatcgacatccagttcaggagggtgccgtgcaa 578
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 93.7 bits (47), Expect = 8e-018
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 373 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 432
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 433 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 492
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || ||||||| ||||||| ||||||
Sbjct: 493 atcatcgacatccagttcaggagggtgccgtgcaa 527
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 93.7 bits (47), Expect = 8e-018
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 422 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 481
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 482 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 541
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || ||||||| ||||||| ||||||
Sbjct: 542 atcatcgacatccagttcaggagggtgccgtgcaa 576
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 85.7 bits (43), Expect = 2e-015
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || |||| | |||||||| ||| |||||
Sbjct: 408 acggtgatgatcaccgacatgaactactacccggtcgcccagtaccactttgacctgagc 467
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| |||||||||| ||||||| ||| | || |||||||| ||||| ||||||| |||
Sbjct: 468 ggcacggccttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggc 527
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaa 225
||||| ||| || |||||| ||||||| ||||||
Sbjct: 528 atcatcgacatccagttcaagagggtgccgtgcaa 562
>gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005N13f, mRNA sequence
Length = 798
Score = 73.8 bits (37), Expect = 8e-012
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 153 caaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgagttca 209
|||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||||||
Sbjct: 498 caaaacccgggctcaacgacaagctccgccactccggcatcatcgacatcgagttca 554
>gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. vulgare cDNA clone HM10A08
3-PRIME, mRNA sequence
Length = 368
Score = 73.8 bits (37), Expect = 8e-012
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 420 tcaagggccccttctctatccgcctcaccagcgagtccggcaagaaggtcatcgctaaag 479
|||||| |||||| || |||||||||||||| ||||||||||||||| ||||||| | |
Sbjct: 367 tcaaggcccccttttccatccgcctcaccagggagtccggcaagaagctcatcgcccagg 308
Query: 480 acatcatcccggcgaactgga 500
|| ||||||| || |||||||
Sbjct: 307 acgtcatccccgccaactgga 287
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 71.9 bits (36), Expect = 3e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 152 gcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgagtt 207
|||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||
Sbjct: 29 gcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcgagtt 84
>gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_N05 5', mRNA sequence
Length = 625
Score = 60.0 bits (30), Expect = 1e-007
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| ||||||| |||||||||||| | || |||| | ||||||||||||| | |||
Sbjct: 468 acggtgatcatcaccgacatgaactactacccggtcgcccgctaccacttcgacctcagc 527
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || |||| || ||| | ||||||| |||| |||||| ||||
Sbjct: 528 ggcactgccttcggcgccatggccaaagacggccgcaacgacgagctccgccacgccggc 587
Query: 191 atcatggacgtcgagttcagaagggtgcggtgcaagta 228
||||| ||| | |||||| ||||||| |||| ||||
Sbjct: 588 atcatcgacatgcagttcaagagggtgccgtgccagta 625
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 322 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 381
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 382 aagctccggcactccggcatcatcgacatccagttca 418
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 397 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 456
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 457 aagctccggcactccggcatcatcgacatccagttca 493
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 435 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 494
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 495 aagctccggcactccggcatcatcgacatccagttca 531
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 339 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 398
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 399 aagctccggcactccggcatcatcgacatccagttca 435
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 449 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 508
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 509 aagctccggcactccggcatcatcgacatccagttca 545
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 444 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 503
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 504 aagctccggcactccggcatcatcgacatccagttca 540
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 438 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 497
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 498 aagctccggcactccggcatcatcgacatccagttca 534
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 426 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 485
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 486 aagctccggcactccggcatcatcgacatccagttca 522
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 449 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 508
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 509 aagctccggcactccggcatcatcgacatccagttca 545
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 361 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 420
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 421 aagctccggcactccggcatcatcgacatccagttca 457
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 447 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 506
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 507 aagctccggcactccggcatcatcgacatccagttca 543
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 435 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 494
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 495 aagctccggcactccggcatcatcgacatccagttca 531
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 77 ttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaag 136
|||||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||
Sbjct: 386 ttcatcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaag 445
Query: 137 gccttcggc 145
|||||||||
Sbjct: 446 gccttcggc 454
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 272 aaccccaactacctggccgtgctggtgaagtttgtggcggacgatggcgacatcgtgctg 331
||||| |||||||||||| | || || ||||| || || ||||| ||||||||||||| |
Sbjct: 581 aacccaaactacctggccatactcgtcaagttcgtcgccgacgacggcgacatcgtgcag 640
Query: 332 atgga 336
|||||
Sbjct: 641 atgga 645
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 77 ttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaag 136
|||||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||
Sbjct: 396 ttcatcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaag 455
Query: 137 gccttcggc 145
|||||||||
Sbjct: 456 gccttcggc 464
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 2 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 61
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 62 aagctccggcactccggcatcatcgacatccagttca 98
Score = 42.1 bits (21), Expect = 0.027
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 428 cccttctctatccgcctcaccagcgagtccggcaaga 464
|||||||| || ||| |||||| ||||||||||||||
Sbjct: 314 cccttctccatgcgcatcaccaacgagtccggcaaga 350
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 460 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 519
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 520 aagctccggcactccggcatcatcgacatccagttca 556
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 457 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 516
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 517 aagctccggcactccggcatcatcgacatccagttca 553
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 58.0 bits (29), Expect = 5e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 444 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 503
Query: 173 aagcttcgccactgcggcatcatggacgtcgagttca 209
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 504 aagctccggcactccggcatcatcgacatccagttca 540
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 77 ttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaag 136
|||||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||
Sbjct: 365 ttcatcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaag 424
Query: 137 gccttcggc 145
|||||||||
Sbjct: 425 gccttcggc 433
Score = 44.1 bits (22), Expect = 0.007
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 251 ttccacatcgagaagggctgcaaccccaactacctggccgtgctggtgaagtttgtggcg 310
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 539 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 598
Query: 311 gacgatggcgacatcgtg 328
||||| ||||||||||||
Sbjct: 599 gacgacggcgacatcgtg 616
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 77 ttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaag 136
|||||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||
Sbjct: 365 ttcatcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaag 424
Query: 137 gccttcggc 145
|||||||||
Sbjct: 425 gccttcggc 433
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 58.0 bits (29), Expect = 5e-007
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 77 ttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaag 136
|||||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||
Sbjct: 365 ttcatcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaag 424
Query: 137 gccttcggc 145
|||||||||
Sbjct: 425 gccttcggc 433
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 54.0 bits (27), Expect = 7e-006
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 176 acggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagc 235
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || || |||||||| | ||||||| |||| || ||| ||||
Sbjct: 236 ggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggc 295
Query: 191 atcatggacgtcgagttca 209
||||| ||| || ||||||
Sbjct: 296 atcatcgacatccagttca 314
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 54.0 bits (27), Expect = 7e-006
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 497 acggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagc 556
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || || |||||||| | ||||||| |||| || ||| ||||
Sbjct: 557 ggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggc 616
Query: 191 atcatggacgtcgagttca 209
||||| ||| || ||||||
Sbjct: 617 atcatcgacatccagttca 635
>gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H04f, mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 7e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| ||||||||||||| |||
Sbjct: 447 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccgggctcagcgag 506
Query: 173 aagcttcgccactgcggcatcat 195
||||| || |||| | |||||||
Sbjct: 507 aagctccggcactcccgcatcat 529
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 54.0 bits (27), Expect = 7e-006
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 37 acggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagc 96
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || || |||||||| | ||||||| |||| || ||| ||||
Sbjct: 97 ggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggc 156
Query: 191 atcatggacgtcgagttca 209
||||| ||| || ||||||
Sbjct: 157 atcatcgacatccagttca 175
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 54.0 bits (27), Expect = 7e-006
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 197 acggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagc 256
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || || |||||||| | ||||||| |||| || ||| ||||
Sbjct: 257 ggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggc 316
Query: 191 atcatggacgtcgagttca 209
||||| ||| || ||||||
Sbjct: 317 atcatcgacatccagttca 335
>gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G16 5', mRNA sequence
Length = 521
Score = 54.0 bits (27), Expect = 7e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 113 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 172
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 429 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 488
Query: 173 aagcttcgccactgcggcatcat 195
||||| || |||| |||||||||
Sbjct: 489 aagctccggcactccggcatcat 511
>gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A06
5-PRIME, mRNA sequence
Length = 421
Score = 54.0 bits (27), Expect = 7e-006
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 71 acggtgttcatcacagacatgaactacgagcctatcgctccctaccacttcgacttgagc 130
|||||| | ||||| |||||||||||| | || | || ||||||||||||||| | |||
Sbjct: 273 acggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagc 332
Query: 131 ggcaaggccttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggc 190
|||| ||||||||| || || |||||||| | ||||||| |||| || ||| ||||
Sbjct: 333 ggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggc 392
Query: 191 atcatggacgtcgagttca 209
||||| ||| || ||||||
Sbjct: 393 atcatcgacatccagttca 411
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,484
Number of Sequences: 312970
Number of extensions: 83484
Number of successful extensions: 25838
Number of sequences better than 0.5: 129
Number of HSP's better than 0.5 without gapping: 123
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25552
Number of HSP's gapped (non-prelim): 260
length of query: 797
length of database: 175,134,539
effective HSP length: 19
effective length of query: 778
effective length of database: 169,188,109
effective search space: 131628348802
effective search space used: 131628348802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)