BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.1
(747 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 125 2e-027
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 125 2e-027
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 117 5e-025
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 105 2e-021
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 100 1e-019
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 100 1e-019
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 98 5e-019
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 98 5e-019
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 98 5e-019
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 98 5e-019
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 94 8e-018
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 92 3e-017
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 92 3e-017
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 92 3e-017
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. v... 92 3e-017
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 90 1e-016
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 84 8e-015
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 74 7e-012
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 72 3e-011
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 58 4e-007
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 58 4e-007
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 58 4e-007
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 58 4e-007
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 58 4e-007
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 58 4e-007
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 58 4e-007
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 58 4e-007
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 58 4e-007
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 58 4e-007
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 58 4e-007
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 58 4e-007
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 58 4e-007
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 58 4e-007
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 58 4e-007
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 58 4e-007
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 54 7e-006
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 54 7e-006
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 54 7e-006
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 54 7e-006
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 54 7e-006
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 54 7e-006
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 54 7e-006
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 52 3e-005
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 52 3e-005
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 52 3e-005
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 52 3e-005
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 52 3e-005
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 52 3e-005
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 52 3e-005
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 52 3e-005
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 52 3e-005
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 52 3e-005
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 52 3e-005
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 52 3e-005
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 52 3e-005
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 52 3e-005
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 52 3e-005
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 50 1e-004
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 50 1e-004
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 50 1e-004
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 50 1e-004
gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. v... 50 1e-004
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 50 1e-004
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 50 1e-004
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 50 1e-004
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 48 4e-004
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 48 4e-004
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 48 4e-004
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 48 4e-004
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 48 4e-004
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 48 4e-004
gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, dro... 48 4e-004
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 48 4e-004
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 48 4e-004
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 48 4e-004
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 46 0.002
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 46 0.002
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 46 0.002
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 46 0.002
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 46 0.002
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 46 0.002
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 46 0.002
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 44 0.007
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 44 0.007
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 44 0.007
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 44 0.007
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 44 0.007
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 44 0.007
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 42 0.026
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 42 0.026
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 42 0.026
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 40 0.10
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 40 0.10
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 40 0.10
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 40 0.10
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 38 0.40
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 38 0.40
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 38 0.40
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 38 0.40
>gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
3-PRIME, mRNA sequence
Length = 520
Score = 125 bits (63), Expect = 2e-027
Identities = 96/107 (89%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
|||||||||||||||||| |||| ||||| ||| |||||| ||||||||||||||||
Sbjct: 356 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttctccatccgc 297
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct: 296 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccc 250
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 491 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 432
Query: 249 gacgacggtgacatcgtgctgatggaaatccagga 283
|||||||| |||||||||| |||||| || |||||
Sbjct: 431 gacgacggcgacatcgtgcagatggagattcagga 397
>gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G06
3-PRIME, mRNA sequence
Length = 588
Score = 125 bits (63), Expect = 2e-027
Identities = 96/107 (89%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
|||||||||||||||||| |||| ||||| ||| |||||| ||||||||||||||||
Sbjct: 357 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttctccatccgc 298
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct: 297 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccc 251
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 492 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 433
Query: 249 gacgacggtgacatcgtgctgatggaaatccagga 283
|||||||| |||||||||| |||||| || |||||
Sbjct: 432 gacgacggcgacatcgtgcagatggagattcagga 398
>gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
3-PRIME, mRNA sequence
Length = 545
Score = 117 bits (59), Expect = 5e-025
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
|||||||||||||||||| |||| ||||| ||| |||||| |||||| |||||||||
Sbjct: 367 tggggcgccatctggaggtgggacggcgccaatgcgatcaaggcccccttttccatccgc 308
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct: 307 ctcaccagcgagtccggcaagaagctcatcgcccaggacgtcatccc 261
Score = 54.0 bits (27), Expect = 7e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 502 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 443
Query: 249 gacgacggtgacatcgtgctgatggaaatccagga 283
|||||||| |||||||||| |||||| || |||||
Sbjct: 442 gacgacggcgacatcgtgcagatggagattcagga 408
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 105 bits (53), Expect = 2e-021
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 6 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggc 65
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 66 gttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcga 125
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| ||||||||| | |||||| ||||
Sbjct: 126 catcgagttcacacgggtgccgtgc 150
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 99.6 bits (50), Expect = 1e-019
Identities = 116/138 (84%)
Strand = Plus / Plus
Query: 24 gacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggccttcggc 83
|||||||||||| | || | || ||||||||||||||| | ||||||| ||| ||||||
Sbjct: 440 gacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcggc 499
Query: 84 tccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgag 143
|| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||
Sbjct: 500 aggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcgag 559
Query: 144 ttcagaagggtgcggtgc 161
|||| | |||||| ||||
Sbjct: 560 ttcacacgggtgccgtgc 577
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 99.6 bits (50), Expect = 1e-019
Identities = 116/138 (84%)
Strand = Plus / Plus
Query: 24 gacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggccttcggc 83
|||||||||||| | || | || ||||||||||||||| | ||||||| ||| ||||||
Sbjct: 2 gacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcggc 61
Query: 84 tccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgag 143
|| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||
Sbjct: 62 aggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcgag 121
Query: 144 ttcagaagggtgcggtgc 161
|||| | |||||| ||||
Sbjct: 122 ttcacacgggtgccgtgc 139
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 369 ttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatcccg 428
|||||||||||| || || |||||||||||||| | || ||||||| | |||||||||
Sbjct: 353 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccg 412
Query: 429 ccgaactggag 439
| ||||||||
Sbjct: 413 gccaactggag 423
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 97.6 bits (49), Expect = 5e-019
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| ||| ||||| |||
Sbjct: 435 catcaccgacatgaactactacccggtggcgccctaccacttcgacctgaccggcacggc 494
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || ||||||||| |||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 495 gttcggcaggctcgcaaagccccggctcaacgacaggctccgccactccggcatcatcga 554
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| ||||||||| | |||||| ||||
Sbjct: 555 catcgagttcacacgggtgccgtgc 579
>gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H04 5', mRNA sequence
Length = 612
Score = 97.6 bits (49), Expect = 5e-019
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| ||
Sbjct: 415 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacagc 474
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 475 gttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcga 534
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| ||||||||| | |||||| ||||
Sbjct: 535 catcgagttcacacgggtgccgtgc 559
>gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01B01
3-PRIME, mRNA sequence
Length = 574
Score = 97.6 bits (49), Expect = 5e-019
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| ||
Sbjct: 429 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacagc 488
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 489 gttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcga 548
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| ||||||||| | |||||| ||||
Sbjct: 549 catcgagttcacacgggtgccgtgc 573
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 97.6 bits (49), Expect = 5e-019
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| ||
Sbjct: 123 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacagc 182
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 183 gttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcga 242
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| ||||||||| | |||||| ||||
Sbjct: 243 catcgagttcacacgggtgccgtgc 267
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 369 ttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatcccg 428
|||||||||||| || || |||||||||||||| | || ||||||| | |||||||||
Sbjct: 481 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccg 540
Query: 429 ccgaactggag 439
| ||||||||
Sbjct: 541 gccaactggag 551
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 93.7 bits (47), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| ||
Sbjct: 365 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacagc 424
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct: 425 gttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcga 484
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 485 catcgagttca 495
>gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped genomic sequences from PCR
products Hordeum vulgare subsp. vulgare genomic, DNA
sequence
Length = 499
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 176 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 117
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 116 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 57
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| ||||||| ||||||| ||||||
Sbjct: 56 atccagttcaggagggtgccgtgcaa 31
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 411 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 470
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 471 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 530
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| ||||||| ||||||| ||||||
Sbjct: 531 atccagttcaggagggtgccgtgcaa 556
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 433 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 492
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 493 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 552
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| ||||||| ||||||| ||||||
Sbjct: 553 atccagttcaggagggtgccgtgcaa 578
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 382 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 441
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 442 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 501
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| ||||||| ||||||| ||||||
Sbjct: 502 atccagttcaggagggtgccgtgcaa 527
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 431 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 490
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 491 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 550
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| ||||||| ||||||| ||||||
Sbjct: 551 atccagttcaggagggtgccgtgcaa 576
>gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. vulgare cDNA clone HM10A08
3-PRIME, mRNA sequence
Length = 368
Score = 91.7 bits (46), Expect = 3e-017
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 358 tcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaag 417
|||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||| | |
Sbjct: 367 tcaaggcccccttttccatccgcctcaccagggagtccggcaagaagctcatcgcccagg 308
Query: 418 acgtcatccc 427
||||||||||
Sbjct: 307 acgtcatccc 298
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 89.7 bits (45), Expect = 1e-016
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 421 catcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggc 480
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || |||||||||||||||||||||| ||| || |||| ||||||||| ||
Sbjct: 481 gttcggcaggctcgcaaagcccgggctcaacgacaggctccggcactccggcatcatcga 540
Query: 137 cgtcgagttcagaagggtgcggtgc 161
| |||| |||| | |||||| ||||
Sbjct: 541 catcgaattcacacgggtgccgtgc 565
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 83.8 bits (42), Expect = 8e-015
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || |||| | |||||||| ||| ||||||||| ||||
Sbjct: 417 atcaccgacatgaactactacccggtcgcccagtaccactttgacctgagcggcacggcc 476
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| ||||||| ||| | || |||||||| ||||| ||||||| |||||||| |||
Sbjct: 477 ttcggcgccctggccaagtcgggcctcaacgagaagctccgccactcgggcatcatcgac 536
Query: 138 gtcgagttcagaagggtgcggtgcaa 163
|| |||||| ||||||| ||||||
Sbjct: 537 atccagttcaagagggtgccgtgcaa 562
>gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005N13f, mRNA sequence
Length = 798
Score = 73.8 bits (37), Expect = 7e-012
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 91 caaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||||||
Sbjct: 498 caaaacccgggctcaacgacaagctccgccactccggcatcatcgacatcgagttca 554
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 71.9 bits (36), Expect = 3e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 90 gcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggacgtcgagtt 145
|||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||
Sbjct: 29 gcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcgagtt 84
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 369 ttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatcccg 428
|||||||||||| || || |||||||||||||| | || ||||||| | |||||||||
Sbjct: 313 ttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccg 372
Query: 429 ccgaactggag 439
| ||||||||
Sbjct: 373 gccaactggag 383
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 322 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 381
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 382 aagctccggcactccggcatcatcgacatccagttca 418
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 397 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 456
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 457 aagctccggcactccggcatcatcgacatccagttca 493
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 435 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 494
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 495 aagctccggcactccggcatcatcgacatccagttca 531
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 339 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 398
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 399 aagctccggcactccggcatcatcgacatccagttca 435
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 449 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 508
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 509 aagctccggcactccggcatcatcgacatccagttca 545
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 444 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 503
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 504 aagctccggcactccggcatcatcgacatccagttca 540
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 438 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 497
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 498 aagctccggcactccggcatcatcgacatccagttca 534
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 426 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 485
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 486 aagctccggcactccggcatcatcgacatccagttca 522
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 449 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 508
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 509 aagctccggcactccggcatcatcgacatccagttca 545
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 361 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 420
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 421 aagctccggcactccggcatcatcgacatccagttca 457
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 447 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 506
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 507 aagctccggcactccggcatcatcgacatccagttca 543
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 435 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 494
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 495 aagctccggcactccggcatcatcgacatccagttca 531
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 2 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 61
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 62 aagctccggcactccggcatcatcgacatccagttca 98
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaaga 402
||||||||||| ||| |||||| ||||||||||||||
Sbjct: 314 cccttctccatgcgcatcaccaacgagtccggcaaga 350
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 460 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 519
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 520 aagctccggcactccggcatcatcgacatccagttca 556
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 457 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 516
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 517 aagctccggcactccggcatcatcgacatccagttca 553
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 444 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 503
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 504 aagctccggcactccggcatcatcgacatccagttca 540
>gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H04f, mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 7e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| ||||||||||||| |||
Sbjct: 447 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccgggctcagcgag 506
Query: 111 aagcttcgccactgcggcatcat 133
||||| || |||| | |||||||
Sbjct: 507 aagctccggcactcccgcatcat 529
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||||
Sbjct: 388 catcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggc 447
Query: 77 cttcggc 83
|||||||
Sbjct: 448 cttcggc 454
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 210 aaccccaactacctggccgtgcttgtgaagtttgtggcggacgacggtgacatcgtgctg 269
||||| |||||||||||| | || || ||||| || || |||||||| |||||||||| |
Sbjct: 581 aacccaaactacctggccatactcgtcaagttcgtcgccgacgacggcgacatcgtgcag 640
Query: 270 atgga 274
|||||
Sbjct: 641 atgga 645
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||||
Sbjct: 398 catcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggc 457
Query: 77 cttcggc 83
|||||||
Sbjct: 458 cttcggc 464
>gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G16 5', mRNA sequence
Length = 521
Score = 54.0 bits (27), Expect = 7e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| |||| |||| || |||||| || |||| |||||||| |||| |||
Sbjct: 429 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcgag 488
Query: 111 aagcttcgccactgcggcatcat 133
||||| || |||| |||||||||
Sbjct: 489 aagctccggcactccggcatcat 511
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||||
Sbjct: 367 catcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggc 426
Query: 77 cttcggc 83
|||||||
Sbjct: 427 cttcggc 433
Score = 44.1 bits (22), Expect = 0.007
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||| |||| ||||| |||||||||||| | || || ||||| || ||
Sbjct: 539 ttccacgtcgagaccggctcgaacccaaactacctggccatactcgtcaagttcgtcgcc 598
Query: 249 gacgacggtgacatcgtg 266
|||||||| |||||||||
Sbjct: 599 gacgacggcgacatcgtg 616
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||||
Sbjct: 367 catcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggc 426
Query: 77 cttcggc 83
|||||||
Sbjct: 427 cttcggc 433
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||| |||||||||||| ||||| || |||||| | ||| || |||||||||
Sbjct: 367 catcaccgacaagaactacgagcccatcgcgccgtaccacattgacctgtccggcaaggc 426
Query: 77 cttcggc 83
|||||||
Sbjct: 427 cttcggc 433
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 3e-005
Identities = 81/98 (82%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaa-cga 109
|||||||||||| |||| |||| || |||||| || |||| |||||||| ||||| |||
Sbjct: 406 taccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcaagcga 465
Query: 110 caagcttcgccactgcggcatcatggacgtcgagttca 147
||||| || |||| ||||||||| ||| || ||||||
Sbjct: 466 gaagctccggcactccggcatcatcgacatccagttca 503
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 52.0 bits (26), Expect = 3e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 9 atcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcaccgcc 68
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| || || |||||||| | ||||||| |||| || ||| ||||||||| |||
Sbjct: 69 ttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatcgac 128
Query: 138 gtcgagttca 147
|| ||||||
Sbjct: 129 atccagttca 138
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 52.0 bits (26), Expect = 3e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 185 atcacggacatgaactactacccggtggcgccctaccacttcgacctcagcggcaccgcc 244
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| || || |||||||| | ||||||| |||| || ||| ||||||||| |||
Sbjct: 245 ttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatcgac 304
Query: 138 gtcgagttca 147
|| ||||||
Sbjct: 305 atccagttca 314
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 52.0 bits (26), Expect = 3e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 506 atcacggacatgaactactacccggtggcgccctaccacttcgacctcagcggcaccgcc 565
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| || || |||||||| | ||||||| |||| || ||| ||||||||| |||
Sbjct: 566 ttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatcgac 625
Query: 138 gtcgagttca 147
|| ||||||
Sbjct: 626 atccagttca 635
>gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E09f, mRNA sequence
Length = 699
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 90 gcaaagcccgggctcaacgacaagcttcgccact 123
|||||||||||||||||||||| ||| |||||||
Sbjct: 507 gcaaagcccgggctcaacgacaggctccgccact 540
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 52.0 bits (26), Expect = 3e-005
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 18 atcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggcc 77
||||| |||||||||||| | || | || ||||||||||||||| | ||||||| |||
Sbjct: 46 atcacggacatgaactactacccggtggcgccctaccacttcgacctcagcggcaccgcc 105
Query: 78 ttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatggac 137
|||||| || || |||||||| | ||||||| |||| || ||| ||||||||| |||
Sbjct: 106 ttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcatcgac 165
Query: 138 gtcgagttca 147
|| ||||||
Sbjct: 166 atccagttca 175
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,924
Number of Sequences: 312970
Number of extensions: 85924
Number of successful extensions: 26138
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25954
Number of HSP's gapped (non-prelim): 168
length of query: 747
length of database: 175,134,539
effective HSP length: 19
effective length of query: 728
effective length of database: 169,188,109
effective search space: 123168943352
effective search space used: 123168943352
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)