BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.3
(672 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedl... 131 3e-029
gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA li... 121 3e-026
gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA li... 121 3e-026
gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA li... 113 8e-024
gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA li... 111 3e-023
gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, dro... 107 5e-022
gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA li... 105 2e-021
gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. v... 103 7e-021
gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. v... 96 2e-018
gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedl... 90 1e-016
gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA li... 86 2e-015
gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedl... 82 3e-014
gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedl... 82 3e-014
gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day ger... 78 4e-013
gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day ger... 78 4e-013
gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day ger... 78 4e-013
gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day ger... 74 7e-012
gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedl... 72 3e-011
gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subs... 70 1e-010
gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subs... 70 1e-010
gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike... 66 2e-009
gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DA... 66 2e-009
gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedl... 66 2e-009
gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, dro... 64 6e-009
gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedl... 60 1e-007
gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA li... 60 1e-007
gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DA... 52 2e-005
gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedl... 52 2e-005
gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedl... 52 2e-005
gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedl... 50 9e-005
gb|BM443649.2|BM443649 EBem09_SQ001_A19_R embryo, 1 Day ger... 50 9e-005
gb|BM445101.2|BM445101 EBem09_SQ007_G24_R embryo, 1 Day ger... 50 9e-005
gb|BM445279.2|BM445279 EBem09_SQ007_P07_R embryo, 1 Day ger... 50 9e-005
gb|BQ756597.1|BQ756597 EBem09_SQ003_D03_R embryo, 1 Day ger... 50 9e-005
gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA li... 48 4e-004
gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Le... 46 0.001
gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Le... 46 0.001
gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Li... 46 0.001
gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedl... 46 0.001
gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA li... 46 0.001
gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA li... 46 0.001
gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA li... 46 0.001
gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA li... 46 0.001
gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA li... 46 0.001
gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA li... 46 0.001
gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA li... 46 0.001
gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA li... 46 0.001
gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA li... 46 0.001
gb|AV935825.1|AV935825 AV935825 K. Sato unpublished cDNA li... 46 0.001
gb|BJ469713.1|BJ469713 BJ469713 K. Sato unpublished cDNA li... 46 0.001
gb|BJ476805.1|BJ476805 BJ476805 K. Sato unpublished cDNA li... 46 0.001
gb|BQ659497.1|BQ659497 HE01J14u HE Hordeum vulgare subsp. v... 46 0.001
gb|BM372933.2|BM372933 EBma04_SQ002_H02_R maternal, 10 DPA,... 46 0.001
gb|CA022080.1|CA022080 HZ42B20r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA026694.1|CA026694 HZ56K16r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CB858429.1|CB858429 HI06P17w HI Hordeum vulgare subsp. v... 46 0.001
gb|CB877034.1|CB877034 HP03F07T HP Hordeum vulgare subsp. v... 46 0.001
gb|CB879697.1|CB879697 HP03F07w HP Hordeum vulgare subsp. v... 46 0.001
gb|CD663592.1|CD663592 UCRHV18_06aa04_b1 Drought-stressed D... 46 0.001
gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedl... 42 0.023
gb|BI947731.1|BI947731 HVSMEl0006K11f Hordeum vulgare spike... 42 0.023
gb|BI948372.1|BI948372 HVSMEl0009E13f Hordeum vulgare spike... 40 0.091
gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedl... 40 0.091
gb|BE195244.3|BE195244 HVSMEh0088K24f Hordeum vulgare 5-45 ... 40 0.091
gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 ... 40 0.091
gb|AV931076.1|AV931076 AV931076 K. Sato unpublished cDNA li... 40 0.091
gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA li... 40 0.091
gb|BJ459432.1|BJ459432 BJ459432 K. Sato unpublished cDNA li... 40 0.091
gb|CA022259.1|CA022259 HZ42J20r HZ Hordeum vulgare subsp. v... 40 0.091
gb|BE427729.1|BE427729 PSR6671 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427731.1|BE427731 PSR6673 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427732.1|BE427732 PSR6674 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427734.1|BE427734 PSR6677 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427735.1|BE427735 PSR6678 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427739.1|BE427739 PSR6684 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427794.1|BE427794 PSR6781 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427800.1|BE427800 PSR6790 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427802.1|BE427802 PSR6792 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427803.1|BE427803 PSR6793 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427805.1|BE427805 PSR6795 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427806.1|BE427806 PSR6796 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427807.1|BE427807 PSR6797 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427811.1|BE427811 PSR6802 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427814.1|BE427814 PSR6808 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427815.1|BE427815 PSR6809 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427816.1|BE427816 PSR6810 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427821.1|BE427821 PSR6815 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427823.1|BE427823 PSR6817 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427825.1|BE427825 PSR6819 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427826.1|BE427826 PSR6820 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427827.1|BE427827 PSR6821 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427828.1|BE427828 PSR6822 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427833.1|BE427833 PSR6827 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE427842.1|BE427842 PSR6840 ITEC PSR Barley Inflorescenc... 38 0.36
gb|BE454845.1|BE454845 HVSMEh0095E05f Hordeum vulgare 5-45 ... 38 0.36
gb|BG365536.1|BG365536 HVSMEi0003B22f Hordeum vulgare 20 DA... 38 0.36
gb|BI949025.1|BI949025 HVSMEl0012B07f Hordeum vulgare spike... 38 0.36
gb|BF266125.2|BF266125 HV_CEa0014D24f Hordeum vulgare seedl... 38 0.36
gb|BG414755.1|BG414755 HVSMEk0003J19f Hordeum vulgare testa... 38 0.36
gb|BG415203.1|BG415203 HVSMEk0005I16f Hordeum vulgare testa... 38 0.36
gb|BG416746.1|BG416746 HVSMEk0014F08f Hordeum vulgare testa... 38 0.36
gb|BG417971.1|BG417971 HVSMEk0020F20f Hordeum vulgare testa... 38 0.36
gb|BE454366.3|BE454366 HVSMEh0093N17f Hordeum vulgare 5-45 ... 38 0.36
gb|BE454492.3|BE454492 HVSMEh0094A02f Hordeum vulgare 5-45 ... 38 0.36
gb|BE602672.2|BE602672 HVSMEh0101A21f Hordeum vulgare 5-45 ... 38 0.36
gb|BG365634.2|BG365634 HVSMEi0003I02f Hordeum vulgare 20 DA... 38 0.36
gb|BG366386.2|BG366386 HVSMEi0006N24f Hordeum vulgare 20 DA... 38 0.36
gb|BG369358.2|BG369358 HVSMEi0024B14f Hordeum vulgare 20 DA... 38 0.36
gb|BG369588.2|BG369588 HVSMEi0025B12f Hordeum vulgare 20 DA... 38 0.36
gb|BG414551.2|BG414551 HVSMEk0002N14f Hordeum vulgare testa... 38 0.36
gb|BG418257.2|BG418257 HVSMEk0022B19f Hordeum vulgare testa... 38 0.36
gb|BQ465942.1|BQ465942 HT01C02T HT Hordeum vulgare subsp. v... 38 0.36
gb|BQ466541.1|BQ466541 HT02N08r HT Hordeum vulgare subsp. v... 38 0.36
gb|BM441867.2|BM441867 EBed07_SQ001_M10_R endosperm, 28 DPA... 38 0.36
gb|BI780034.2|BI780034 EBma08_SQ001_D14_R maternal, 28 DPA,... 38 0.36
gb|BI780179.2|BI780179 EBma08_SQ001_K01_R maternal, 28 DPA,... 38 0.36
gb|BM096890.2|BM096890 EBma08_SQ001_O17_R maternal, 28 DPA,... 38 0.36
gb|BM371442.2|BM371442 EBma08_SQ002_M02_R maternal, 28 DPA,... 38 0.36
gb|BM371550.2|BM371550 EBma08_SQ003_C16_R maternal, 28 DPA,... 38 0.36
gb|BM371924.2|BM371924 EBma08_SQ004_G15_R maternal, 28 DPA,... 38 0.36
gb|BQ755807.1|BQ755807 EBed07_SQ003_N15_R endosperm, 28 DPA... 38 0.36
gb|BU984341.1|BU984341 HF03K16r HF Hordeum vulgare subsp. v... 38 0.36
gb|BU988906.1|BU988906 HF19B23r HF Hordeum vulgare subsp. v... 38 0.36
gb|CA012187.1|CA012187 HT04K16r HT Hordeum vulgare subsp. v... 38 0.36
gb|CA013184.1|CA013184 HT07K10r HT Hordeum vulgare subsp. v... 38 0.36
gb|CA013444.1|CA013444 HT08H14r HT Hordeum vulgare subsp. v... 38 0.36
gb|CA014196.1|CA014196 HT10K16r HT Hordeum vulgare subsp. v... 38 0.36
gb|CA019539.1|CA019539 HV12E21r HV Hordeum vulgare subsp. v... 38 0.36
>gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023K15f, mRNA sequence
Length = 551
Score = 131 bits (66), Expect = 3e-029
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 246 tagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagtag 305
||||| |||||| ||| ||| |||||||||| || |||||||||| ||||||||||||||
Sbjct: 101 tagcaggtgaggctggtccccgggtcgacgccgaactgctggcagaactgcttgtagtag 160
Query: 306 ccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttgatg 365
||||||| |||| | || |||||| || |||||||||||||| ||||||||||||
Sbjct: 161 gcgacgcgatcgttgacggcggtggggttcttgccgttgcactcgagcgcgccgttgatg 220
Query: 366 gccctgatggtggcgccgaagccctg 391
|||||||||||||||||||| |||||
Sbjct: 221 gccctgatggtggcgccgaatccctg 246
Score = 63.9 bits (32), Expect = 6e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 516 ccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgcc 575
|||||||||||||||||||||| |||||||| ||||| |||||||| || ||| ||
Sbjct: 377 ccgtagttgtagttccacgagaattgcagcggaccgcggccgtagtagcccttcccggcg 436
Query: 576 gcgcacggccactgcctgttgctcgcgtcgcagtag 611
|||||||||||| | |||| ||| ||||||||||
Sbjct: 437 acgcacggccactccgtgttcgtcgggtcgcagtag 472
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 404 gtgcacgttgttcatccagaaccagagcgccg 435
||||||| ||||||||||| ||||||||||||
Sbjct: 265 gtgcacgctgttcatccagtaccagagcgccg 296
>gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 5', mRNA sequence
Length = 532
Score = 121 bits (61), Expect = 3e-026
Identities = 274/345 (79%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 381 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 322
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 321 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 262
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 261 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 202
Query: 424 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 483
|||||| ||||| || ||||| | | | | ||||||||||||| | | |||| | | |
Sbjct: 201 accagaacgccgcctggaacgtcaacgccgggtcctgcgccaccgtctccgggttgtcca 142
Query: 484 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 543
|||||||||| |||| | | |||||| | |||||||||||||||||||| | |||||
Sbjct: 141 gcccgttgaacccgagcttctccccggccgccccgtagttgtagttccacgtcagctgca 82
Query: 544 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 588
|||| || |||||||||||| || ||||| | |||||||||||
Sbjct: 81 gcggccctcgcccgtagtaccccttccccgaggtgcacggccact 37
>gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 3', mRNA sequence
Length = 505
Score = 121 bits (61), Expect = 3e-026
Identities = 274/345 (79%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 124 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 183
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 184 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 243
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 244 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 303
Query: 424 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 483
|||||| ||||| || ||||| | | | | ||||||||||||| | | |||| | | |
Sbjct: 304 accagaacgccgcctggaacgtcaacgccgggtcctgcgccaccgtctccgggttgtcca 363
Query: 484 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 543
|||||||||| |||| | | |||||| | |||||||||||||||||||| | |||||
Sbjct: 364 gcccgttgaacccgagcttctccccggccgccccgtagttgtagttccacgtcagctgca 423
Query: 544 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 588
|||| || |||||||||||| || ||||| | |||||||||||
Sbjct: 424 gcggccctcgcccgtagtaccccttccccgaggtgcacggccact 468
>gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 3', mRNA sequence
Length = 633
Score = 113 bits (57), Expect = 8e-024
Identities = 275/347 (79%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
|||||||||||||| || ||| |||||||||| || |||||||||||| | |||||
Sbjct: 206 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagtaggcccggtagt 265
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | ||||||||||| ||| | ||| |||||||||||| ||| |||||
Sbjct: 266 agcccccccgcgcgttcatggcggccgagttcccgccgttgcactcgc---cgctgttga 322
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 323 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 382
Query: 424 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 483
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 383 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 442
Query: 484 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 543
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 443 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 502
Query: 544 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 590
|||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 503 gcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 549
>gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31c19 3', mRNA sequence
Length = 537
Score = 111 bits (56), Expect = 3e-023
Identities = 188/232 (81%)
Strand = Plus / Plus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 174 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 233
Query: 419 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 478
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 234 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 293
Query: 479 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 538
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 294 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 353
Query: 539 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 590
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 354 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 405
>gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_K13 5', mRNA sequence
Length = 403
Score = 107 bits (54), Expect = 5e-022
Identities = 186/230 (80%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 250 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 191
Query: 419 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 478
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 190 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 131
Query: 479 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 538
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 130 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 71
Query: 539 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 588
||||||||| ||||||||||||||| || ||||| | |||||||||||
Sbjct: 70 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccact 21
>gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31e07 3', mRNA sequence
Length = 536
Score = 105 bits (53), Expect = 2e-021
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 258 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 317
Query: 419 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 478
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 318 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 377
Query: 479 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 538
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 378 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 437
Query: 539 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 590
||||||||| ||||||||||||||| || |||| | |||||||||||||
Sbjct: 438 ctgcagcggcccgcgcccgtagtaccccttncccgaggtgcacggccactgc 489
Score = 99.6 bits (50), Expect = 1e-019
Identities = 253/320 (79%), Gaps = 3/320 (0%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
|||||||||||||| || ||| |||||||||| || ||||| |||||| | |||||
Sbjct: 146 cctagcaagtgaggctgttccccgggtcgacgccgaactgcttgcagtaggcccggtagt 205
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | ||||||||||| ||| | ||| ||||||||||| | ||| |||||
Sbjct: 206 agcccgcccgcgcgttcatggcggccgagttcccgccgttgcactc---gccgctgttga 262
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 263 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 322
Query: 424 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 483
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 323 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 382
Query: 484 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 543
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 383 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 442
Query: 544 gcgggccgcgcccgtagtac 563
|||| |||||||||||||||
Sbjct: 443 gcggcccgcgcccgtagtac 462
>gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX10F18
5-PRIME, mRNA sequence
Length = 613
Score = 103 bits (52), Expect = 7e-021
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 407 cacgttgttcatccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccac 466
||||||||||||||||||||||||||||| ||||||||| | | | | ||||||||||||
Sbjct: 537 cacgttgttcatccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccac 478
Query: 467 cctgttggggtcggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgta 526
| | | |||| | |||||||| ||| |||| | | |||| || | ||||||||||||
Sbjct: 477 cttctccgggttgttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgta 418
Query: 527 gttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggcca 586
|||||| | | ||||||||| ||||||||||||||| || ||||| | |||||||||
Sbjct: 417 gttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggcca 358
Query: 587 ctgc 590
||||
Sbjct: 357 ctgc 354
>gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K07
3-PRIME, mRNA sequence
Length = 576
Score = 95.6 bits (48), Expect = 2e-018
Identities = 248/314 (78%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
|||||||||||||| || ||| |||||||||| || |||||||||||| | |||||
Sbjct: 266 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagtaggcccggtagt 325
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | ||||||||||| ||| | ||| |||||||||||| ||| |||||
Sbjct: 326 agcccccccgcgcgttcatggcggccgagttcccgccgttgcactcgc---cgctgttga 382
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 383 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 442
Query: 424 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 483
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 443 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 502
Query: 484 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 543
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 503 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 562
Query: 544 gcgggccgcgcccg 557
|||| |||||||||
Sbjct: 563 gcggcccgcgcccg 576
>gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012G06f, mRNA sequence
Length = 767
Score = 89.7 bits (45), Expect = 1e-016
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 152 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 211
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 212 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 271
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 272 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 331
Query: 424 accagagcgccgtcttgaacg 444
|||||| ||||| || |||||
Sbjct: 332 accagaacgccgcctggaacg 352
Score = 60.0 bits (30), Expect = 1e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 506 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtac 563
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 414 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtac 471
>gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 5', mRNA sequence
Length = 360
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 192 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 133
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 132 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 73
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 72 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 13
Query: 424 accagagcgcc 434
|||||| ||||
Sbjct: 12 accagaacgcc 2
>gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 3', mRNA sequence
Length = 340
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 149 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 208
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 209 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 268
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 269 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 328
Query: 424 accagagcgcc 434
|||||| ||||
Sbjct: 329 accagaacgcc 339
>gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007D10f, mRNA sequence
Length = 617
Score = 81.8 bits (41), Expect = 3e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 572 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 513
Query: 304 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 363
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 512 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 453
Query: 364 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 423
| || ||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 452 ttgcactggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 393
Query: 424 accagagcgccgtcttgaacg 444
|||||| ||||| || |||||
Sbjct: 392 accagaacgccgcctggaacg 372
Score = 61.9 bits (31), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 506 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtactt 565
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 310 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccc 251
Query: 566 ctgccccgccgcgcacggccact 588
|| ||||| | |||||||||||
Sbjct: 250 cttccccgaggtgcacggccact 228
>gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P16f, mRNA sequence
Length = 725
Score = 81.8 bits (41), Expect = 3e-014
Identities = 184/232 (79%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| ||| | | ||| ||||||||
Sbjct: 591 gttgattgccctggtggtcgcgccgaacccccgcggcaggacatgcttcacattgttcat 532
Query: 419 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 478
||||||||||||||||| |||||||| | | | | ||| |||||||| | | ||||
Sbjct: 531 ccagaaccagagcgccgctttgaacgccacctctgggtcatgcgccacattctcgggggt 472
Query: 479 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 538
| |||||||| ||| |||| | | |||| || | ||||||||||||||||| | |
Sbjct: 471 gttgagcccgtcgaacccgacgctcttccccgccgcnccgtagttgtagttccatgtcag 412
Query: 539 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 590
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 411 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 360
>gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_C05 5', mRNA sequence
Length = 426
Score = 77.8 bits (39), Expect = 4e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 419 ccagaaccagagcgccgtcttgaacgc 445
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_F06 5', mRNA sequence
Length = 420
Score = 77.8 bits (39), Expect = 4e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 419 ccagaaccagagcgccgtcttgaacgc 445
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_G13 5', mRNA sequence
Length = 420
Score = 77.8 bits (39), Expect = 4e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 419 ccagaaccagagcgccgtcttgaacgc 445
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ003_J08 5', mRNA sequence
Length = 111
Score = 73.8 bits (37), Expect = 7e-012
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 407 cacgttgttcatccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccac 466
||||||||||||||||||||||||||||| ||||||||| | | | | ||||||||||||
Sbjct: 79 cacgttgttcatccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccac 20
Query: 467 c 467
|
Sbjct: 19 c 19
>gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009D03f, mRNA sequence
Length = 557
Score = 71.9 bits (36), Expect = 3e-011
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 357 ccgttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttc 416
|||||||| |||||| | || |||||||| |||||||||| || ||||||||||| ||
Sbjct: 554 ccgttgattgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtc 495
Query: 417 atccagaaccagagcgccgtcttgaacg 444
||||||||||||| ||||| || |||||
Sbjct: 494 atccagaaccagaacgccgcctggaacg 467
Score = 61.9 bits (31), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 506 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtactt 565
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 405 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccc 346
Query: 566 ctgccccgccgcgcacggccact 588
|| ||||| | |||||||||||
Sbjct: 345 cttccccgaggtgcacggccact 323
>gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F1, mRNA sequence
Length = 240
Score = 69.9 bits (35), Expect = 1e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 98 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 39
Query: 419 ccagaaccagagcgccgtcttgaacgc 445
|||||||||||| |||| |||||||||
Sbjct: 38 ccagaaccagagtgccgccttgaacgc 12
>gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F2, mRNA sequence
Length = 240
Score = 69.9 bits (35), Expect = 1e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 359 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 418
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 98 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 39
Query: 419 ccagaaccagagcgccgtcttgaacgc 445
|||||||||||| |||| |||||||||
Sbjct: 38 ccagaaccagagtgccgccttgaacgc 12
>gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002L21f, mRNA sequence
Length = 839
Score = 65.9 bits (33), Expect = 2e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 494 gccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcg 553
||||||| ||| ||| || ||||||||||||||||| |||||||| | || |||||
Sbjct: 479 gccgatggcccgccctgccggcccgtagttgtagttgtgggagatctggatgggcccgcg 420
Query: 554 cccgtagtacttctgccccgccgcgcacggccactgc 590
|||| ||||||||| |||| ||||||||||||||||
Sbjct: 419 cccgaagtacttcttgcccggcgcgcacggccactgc 383
Score = 40.1 bits (20), Expect = 0.091
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaa 442
||||||||||||| | ||||||||||||
Sbjct: 558 tcatccagaaccacaacgccgtcttgaa 531
>gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012P08f, mRNA sequence
Length = 710
Score = 65.9 bits (33), Expect = 2e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 494 gccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcg 553
||||||| ||| ||| || ||||||||||||||||| |||||||| | || |||||
Sbjct: 689 gccgatggcccgccctgccggcccgtagttgtagttgtgggagatctggatgggcccgcg 630
Query: 554 cccgtagtacttctgccccgccgcgcacggccactgc 590
|||| ||||||||| |||| ||||||||||||||||
Sbjct: 629 cccgaagtacttcttgcccggcgcgcacggccactgc 593
>gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018G12f, mRNA sequence
Length = 523
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 409 cgttgttcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||||||||||||||||| |||||||||
Sbjct: 306 cgttgttcatccagaaccagagcgccgccttgaacgc 270
Score = 61.9 bits (31), Expect = 2e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 516 ccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgcc 575
||||||||||||||||| | | ||||||||| ||||||||||||||| || |||||
Sbjct: 198 ccgtagttgtagttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccgag 139
Query: 576 gcgcacggccactgc 590
| |||||||||||||
Sbjct: 138 gtgcacggccactgc 124
>gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_K12 5', mRNA sequence
Length = 592
Score = 63.9 bits (32), Expect = 6e-009
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 574
|||||||||||||||||| | | ||||||||| ||||||||||||||| || |||||
Sbjct: 575 cccgtagttgtagttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccga 516
Query: 575 cgcgcacggccactgc 590
| |||||||||||||
Sbjct: 515 ggtgcacggccactgc 500
>gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010F03f, mRNA sequence
Length = 953
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 574
|||||||||||||||||||| | ||||||||| || |||||||||||| || |||||
Sbjct: 589 cccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccccttccccga 530
Query: 575 cgcgcacggccact 588
| |||||||||||
Sbjct: 529 ggtgcacggccact 516
>gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 5', mRNA sequence
Length = 340
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 158 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 99
Query: 304 agccgacgcgcgcgttca 321
|||| | ||||||||||
Sbjct: 98 agcccgcccgcgcgttca 81
>gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 3', mRNA sequence
Length = 325
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 303
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 168 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 227
Query: 304 agccgacgcgcgcgttca 321
|||| | ||||||||||
Sbjct: 228 agcccgcccgcgcgttca 245
>gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012F13f, mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 2e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 513 ggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgcccc 572
|||| |||||||||||| |||||||| | || ||||||||| ||||||||| |||
Sbjct: 671 ggccggtagttgtagttgtgggagatctggatgggcccgcgcccgaagtacttcttgccc 612
Query: 573 gccgcgcacggccactgc 590
| ||||||||||||||||
Sbjct: 611 ggcgcgcacggccactgc 594
>gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009I06f, mRNA sequence
Length = 569
Score = 52.0 bits (26), Expect = 2e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 574
|||||||||||||||||||| | |||||||| || |||||||||||| || |||||
Sbjct: 565 cccgtagttgtagttccacgtcagttgcagcggccctcgcccgtagtaccccttccccga 506
Query: 575 cgcgcacggccact 588
| |||||||||||
Sbjct: 505 ggtgcacggccact 492
>gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019P18f, mRNA sequence
Length = 713
Score = 52.0 bits (26), Expect = 2e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacg 444
||||||||||||| ||||||||||||||||
Sbjct: 244 tcatccagaaccacagcgccgtcttgaacg 215
Score = 38.2 bits (19), Expect = 0.36
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 516 ccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagta 562
|||||||||||||| | |||| ||||| |||||||| ||||||||
Sbjct: 143 ccgtagttgtagttgaaggagagctgcatggggccgcggccgtagta 97
>gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016O17f, mRNA sequence
Length = 843
Score = 50.1 bits (25), Expect = 9e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 518 gtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgccgc 577
||||||||||||||| | | ||||| ||| ||||||||||||||| || ||||| |
Sbjct: 580 gtagttgtagttccatgtcagctgcaacggcccgcgcccgtagtaccccttccccgaggt 521
Query: 578 gcacggccactgc 590
|||||||||||||
Sbjct: 520 gcacggccactgc 508
>gb|BM443649.2|BM443649 EBem09_SQ001_A19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_A19 5', mRNA sequence
Length = 262
Score = 50.1 bits (25), Expect = 9e-005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagta 292
|||||||||||||| || ||| |||||||||| || ||||||||||||
Sbjct: 94 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagta 46
>gb|BM445101.2|BM445101 EBem09_SQ007_G24_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_G24 5', mRNA sequence
Length = 132
Score = 50.1 bits (25), Expect = 9e-005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagta 292
|||||||||||||| || ||| |||||||||| || ||||||||||||
Sbjct: 94 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagta 46
>gb|BM445279.2|BM445279 EBem09_SQ007_P07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_P07 5', mRNA sequence
Length = 254
Score = 50.1 bits (25), Expect = 9e-005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagta 292
|||||||||||||| || ||| |||||||||| || ||||||||||||
Sbjct: 94 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagta 46
>gb|BQ756597.1|BQ756597 EBem09_SQ003_D03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_D03 5', mRNA sequence
Length = 259
Score = 50.1 bits (25), Expect = 9e-005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 244 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagta 292
|||||||||||||| || ||| |||||||||| || ||||||||||||
Sbjct: 94 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagta 46
>gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 5', mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 539 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 590
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 544 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 493
>gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC003.D02, mRNA sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 345 tcatccagaaccaaatcgccgtcttgaacgc 315
>gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.A09, mRNA sequence
Length = 486
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 113 tcatccagaaccaaatcgccgtcttgaacgc 83
>gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM023cB.11, mRNA sequence
Length = 1135
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 176 tcatccagaaccaaatcgccgtcttgaacgc 146
>gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E17f, mRNA sequence
Length = 815
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 704 tcatccagaaccaaatcgccgtcttgaacgc 674
>gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18g16 5', mRNA sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 273 tcatccagaaccaaatcgccgtcttgaacgc 243
>gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18h03 5', mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 272 tcatccagaaccaaatcgccgtcttgaacgc 242
>gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18h04 5', mRNA sequence
Length = 346
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 271 tcatccagaaccaaatcgccgtcttgaacgc 241
>gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18g16 3', mRNA sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 493 tcatccagaaccaaatcgccgtcttgaacgc 523
>gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6f19 5', mRNA sequence
Length = 192
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 119 tcatccagaaccaaatcgccgtcttgaacgc 89
>gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i19 5', mRNA sequence
Length = 583
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 120 tcatccagaaccaaatcgccgtcttgaacgc 90
>gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6j13 5', mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 78 tcatccagaaccaaatcgccgtcttgaacgc 48
>gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6f19 3', mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 497 tcatccagaaccaaatcgccgtcttgaacgc 527
>gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i19 3', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 415 tcatccagaaccagagcgccgtcttgaacgc 445
||||||||||||| | |||||||||||||||
Sbjct: 492 tcatccagaaccaaatcgccgtcttgaacgc 522
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,870
Number of Sequences: 312970
Number of extensions: 71870
Number of successful extensions: 20259
Number of sequences better than 0.5: 131
Number of HSP's better than 0.5 without gapping: 130
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19993
Number of HSP's gapped (non-prelim): 257
length of query: 672
length of database: 175,134,539
effective HSP length: 19
effective length of query: 653
effective length of database: 169,188,109
effective search space: 110479835177
effective search space used: 110479835177
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)