BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.2
(1186 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA li... 151 6e-035
gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA li... 151 6e-035
gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, dro... 147 1e-033
gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA li... 145 4e-033
gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. v... 137 9e-031
gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. v... 125 4e-027
gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedl... 105 3e-021
gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day ger... 101 5e-020
gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day ger... 101 5e-020
gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day ger... 101 5e-020
gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedl... 100 2e-019
gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedl... 96 3e-018
gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subs... 94 1e-017
gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subs... 94 1e-017
gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedl... 90 2e-016
gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA li... 90 2e-016
gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA li... 90 2e-016
gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedl... 88 8e-016
gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day ger... 84 1e-014
gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedl... 82 5e-014
gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA li... 78 7e-013
gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA li... 78 7e-013
gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, dro... 76 3e-012
gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedl... 68 7e-010
gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike... 66 3e-009
gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DA... 66 3e-009
gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedl... 64 1e-008
gb|BE216858.2|BE216858 HV_CEb0011N12f Hordeum vulgare seedl... 64 1e-008
gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedl... 64 1e-008
gb|BQ765750.1|BQ765750 EBro03_SQ008_F04_R root, 3 week, wat... 64 1e-008
gb|BF627814.2|BF627814 HVSMEb0005N23f Hordeum vulgare seedl... 62 4e-008
gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedl... 60 2e-007
gb|BE213990.1|BE213990 HV_CEb0001N13f Hordeum vulgare seedl... 60 2e-007
gb|BF623642.2|BF623642 HVSMEa0003E14f Hordeum vulgare seedl... 58 7e-007
gb|BG300488.1|BG300488 HVSMEb0017D20f Hordeum vulgare seedl... 58 7e-007
gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA li... 58 7e-007
gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA li... 58 7e-007
gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA li... 58 7e-007
gb|BM097408.2|BM097408 EBem07_SQ001_P19_R embryo, 28 DPA, n... 58 7e-007
gb|BM369656.2|BM369656 EBem07_SQ004_D22_R embryo, 28 DPA, n... 58 7e-007
gb|BM369786.2|BM369786 EBem07_SQ004_J18_R embryo, 28 DPA, n... 58 7e-007
gb|BM368400.2|BM368400 EBem08_SQ002_B18_R embryo, 40 DPA, n... 58 7e-007
gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedl... 56 3e-006
gb|BQ757141.1|BQ757141 EBem10_SQ003_A07_R embryo, 2 Day ger... 52 4e-005
gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedl... 48 7e-004
gb|BG368852.1|BG368852 HVSMEi0020P03f Hordeum vulgare 20 DA... 48 7e-004
gb|BG368854.1|BG368854 HVSMEi0020P07f Hordeum vulgare 20 DA... 48 7e-004
gb|BI949464.1|BI949464 HVSMEl0014A17f Hordeum vulgare spike... 48 7e-004
gb|BG365857.2|BG365857 HVSMEi0004I09f Hordeum vulgare 20 DA... 48 7e-004
gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA li... 48 7e-004
gb|BJ459432.1|BJ459432 BJ459432 K. Sato unpublished cDNA li... 48 7e-004
gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Le... 46 0.003
gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Le... 46 0.003
gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Li... 46 0.003
gb|BG365157.2|BG365157 HVSMEi0001I15f Hordeum vulgare 20 DA... 46 0.003
gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedl... 46 0.003
gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA li... 46 0.003
gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA li... 46 0.003
gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA li... 46 0.003
gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA li... 46 0.003
gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA li... 46 0.003
gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA li... 46 0.003
gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA li... 46 0.003
gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA li... 46 0.003
gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA li... 46 0.003
gb|AV935825.1|AV935825 AV935825 K. Sato unpublished cDNA li... 46 0.003
gb|BJ469713.1|BJ469713 BJ469713 K. Sato unpublished cDNA li... 46 0.003
gb|BJ476805.1|BJ476805 BJ476805 K. Sato unpublished cDNA li... 46 0.003
gb|BQ659497.1|BQ659497 HE01J14u HE Hordeum vulgare subsp. v... 46 0.003
gb|BM372933.2|BM372933 EBma04_SQ002_H02_R maternal, 10 DPA,... 46 0.003
gb|CA022080.1|CA022080 HZ42B20r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CA026694.1|CA026694 HZ56K16r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB858429.1|CB858429 HI06P17w HI Hordeum vulgare subsp. v... 46 0.003
gb|CB877034.1|CB877034 HP03F07T HP Hordeum vulgare subsp. v... 46 0.003
gb|CB879697.1|CB879697 HP03F07w HP Hordeum vulgare subsp. v... 46 0.003
gb|CD663592.1|CD663592 UCRHV18_06aa04_b1 Drought-stressed D... 46 0.003
gb|BF621706.2|BF621706 HVSMEa0011P10f Hordeum vulgare seedl... 44 0.010
gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DA... 44 0.010
gb|BI947443.1|BI947443 HVSMEl0005H24f Hordeum vulgare spike... 44 0.010
gb|BI948276.1|BI948276 HVSMEl0008N14f Hordeum vulgare spike... 44 0.010
gb|BI949249.1|BI949249 HVSMEl0013A02f Hordeum vulgare spike... 44 0.010
gb|BI949350.1|BI949350 HVSMEl0013H11f Hordeum vulgare spike... 44 0.010
gb|BI949605.1|BI949605 HVSMEl0014O01f Hordeum vulgare spike... 44 0.010
gb|BI950473.1|BI950473 HVSMEl0020N22f Hordeum vulgare spike... 44 0.010
gb|BI950475.1|BI950475 HVSMEl0020N24f Hordeum vulgare spike... 44 0.010
gb|BI951414.1|BI951414 HVSMEl0025N19f Hordeum vulgare spike... 44 0.010
gb|BI951463.1|BI951463 HVSMEm0001A11f Hordeum vulgare green... 44 0.010
gb|BI952917.1|BI952917 HVSMEm0008F23f Hordeum vulgare green... 44 0.010
gb|BI953201.1|BI953201 HVSMEm0011K01f Hordeum vulgare green... 44 0.010
gb|BI953910.1|BI953910 HVSMEm0015F08f Hordeum vulgare green... 44 0.010
gb|BI954227.1|BI954227 HVSMEm0016L11f Hordeum vulgare green... 44 0.010
gb|BI954237.1|BI954237 HVSMEm0016M07f Hordeum vulgare green... 44 0.010
gb|BI955596.1|BI955596 HVSMEm0023L14f Hordeum vulgare green... 44 0.010
gb|BI955638.1|BI955638 HVSMEm0023N21f Hordeum vulgare green... 44 0.010
gb|BI955968.1|BI955968 HVSMEm0025D17f Hordeum vulgare green... 44 0.010
gb|BE214283.1|BE214283 HV_CEb0003A01f Hordeum vulgare seedl... 44 0.010
gb|BE216024.1|BE216024 HV_CEb0009C12f Hordeum vulgare seedl... 44 0.010
gb|BE559371.1|BE559371 HV_CEb0024F08f Hordeum vulgare seedl... 44 0.010
gb|BF064990.1|BF064990 HV_CEb0022F13f Hordeum vulgare seedl... 44 0.010
gb|BF065067.1|BF065067 HV_CEb0022N01f Hordeum vulgare seedl... 44 0.010
gb|BF066058.1|BF066058 HV_CEb0014L16f Hordeum vulgare seedl... 44 0.010
gb|BF265236.1|BF265236 HV_CEa0011O17f Hordeum vulgare seedl... 44 0.010
gb|BF265978.2|BF265978 HV_CEa0013N09f Hordeum vulgare seedl... 44 0.010
gb|BF266125.2|BF266125 HV_CEa0014D24f Hordeum vulgare seedl... 44 0.010
gb|BE214577.2|BE214577 HV_CEb0003N19f Hordeum vulgare seedl... 44 0.010
gb|BF065377.2|BF065377 HV_CEb0012E08f Hordeum vulgare seedl... 44 0.010
gb|BF065694.2|BF065694 HV_CEb0013H08f Hordeum vulgare seedl... 44 0.010
gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedl... 44 0.010
gb|BE215473.3|BE215473 HV_CEb0006O09f Hordeum vulgare seedl... 44 0.010
gb|BF065825.3|BF065825 HV_CEb0014B14f Hordeum vulgare seedl... 44 0.010
gb|BE559387.2|BE559387 HV_CEb0024H02f Hordeum vulgare seedl... 44 0.010
gb|AV924171.1|AV924171 AV924171 K. Sato unpublished cDNA li... 44 0.010
gb|AV925874.1|AV925874 AV925874 K. Sato unpublished cDNA li... 44 0.010
gb|BM444141.1|BM444141 EBem09_SQ004_E15_R embryo, 1 Day ger... 44 0.010
gb|BM369392.2|BM369392 EBem07_SQ003_H07_R embryo, 28 DPA, n... 44 0.010
gb|BI780166.2|BI780166 EBma08_SQ001_J11_R maternal, 28 DPA,... 44 0.010
gb|CA003742.1|CA003742 HS15G18r HS Hordeum vulgare subsp. v... 44 0.010
gb|CA019311.1|CA019311 HV11J14r HV Hordeum vulgare subsp. v... 44 0.010
gb|CA028432.1|CA028432 HZ61P07r HZ Hordeum vulgare subsp. v... 44 0.010
gb|BJ543978.1|BJ543978 BJ543978 K. Sato unpublished cDNA li... 44 0.010
gb|BJ544278.1|BJ544278 BJ544278 K. Sato unpublished cDNA li... 44 0.010
gb|BJ544300.1|BJ544300 BJ544300 K. Sato unpublished cDNA li... 44 0.010
gb|BJ544690.1|BJ544690 BJ544690 K. Sato unpublished cDNA li... 44 0.010
gb|BJ544774.1|BJ544774 BJ544774 K. Sato unpublished cDNA li... 44 0.010
gb|BJ544954.1|BJ544954 BJ544954 K. Sato unpublished cDNA li... 44 0.010
gb|BJ545180.1|BJ545180 BJ545180 K. Sato unpublished cDNA li... 44 0.010
gb|BJ546437.1|BJ546437 BJ546437 K. Sato unpublished cDNA li... 44 0.010
gb|BJ546657.1|BJ546657 BJ546657 K. Sato unpublished cDNA li... 44 0.010
gb|CB878161.1|CB878161 HP07J01T HP Hordeum vulgare subsp. v... 44 0.010
emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase... 44 0.010
emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a 44 0.010
emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b 44 0.010
gb|BF628657.2|BF628657 HVSMEb0006P01f Hordeum vulgare seedl... 42 0.041
gb|BI947731.1|BI947731 HVSMEl0006K11f Hordeum vulgare spike... 42 0.041
gb|BI948372.1|BI948372 HVSMEl0009E13f Hordeum vulgare spike... 42 0.041
gb|BE214536.1|BE214536 HV_CEb0003L19f Hordeum vulgare seedl... 42 0.041
gb|BF262973.2|BF262973 HV_CEa0005H11f Hordeum vulgare seedl... 42 0.041
gb|BQ465191.1|BQ465191 HU02O12r HU Hordeum vulgare subsp. v... 42 0.041
gb|BQ466147.1|BQ466147 HT01L11T HT Hordeum vulgare subsp. v... 42 0.041
gb|CA012210.1|CA012210 HT04M11r HT Hordeum vulgare subsp. v... 42 0.041
gb|CA013166.1|CA013166 HT07J12r HT Hordeum vulgare subsp. v... 42 0.041
gb|CA013604.1|CA013604 HT08P16r HT Hordeum vulgare subsp. v... 42 0.041
gb|CA018162.1|CA018162 HV07L16r HV Hordeum vulgare subsp. v... 42 0.041
gb|CA019539.1|CA019539 HV12E21r HV Hordeum vulgare subsp. v... 42 0.041
gb|BF257020.3|BF257020 HVSMEf0011K07f Hordeum vulgare seedl... 40 0.16
gb|BE195244.3|BE195244 HVSMEh0088K24f Hordeum vulgare 5-45 ... 40 0.16
gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 ... 40 0.16
gb|BQ663496.1|BQ663496 HU02O12u HU Hordeum vulgare subsp. v... 40 0.16
gb|BQ768502.1|BQ768502 EBro08_SQ011_K24_R root, 3 week, dro... 40 0.16
gb|BU985025.1|BU985025 HF05O19r HF Hordeum vulgare subsp. v... 40 0.16
gb|BU989862.1|BU989862 HF22O11r HF Hordeum vulgare subsp. v... 40 0.16
gb|CA016825.1|CA016825 HV05P04u HV Hordeum vulgare subsp. v... 40 0.16
gb|CA017694.1|CA017694 HV05P04r HV Hordeum vulgare subsp. v... 40 0.16
gb|U02287.1|HVU02287 Hordeum vulgare cultivar NK1558 chitin... 40 0.16
emb|X15349.1|HVENDCHT Barley (H.vulgare) mRNA for endochiti... 40 0.16
>gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 3', mRNA sequence
Length = 633
Score = 151 bits (76), Expect = 6e-035
Identities = 193/232 (83%)
Strand = Plus / Minus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 549 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 490
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
|||||||||||||||| | ||||||| | | |||| |||||||||||| |||| |
Sbjct: 489 gaactacaactacggggcggcggggaagagcgtcgggttcgacgggctcaacaacccgga 430
Query: 678 cagggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacag 737
| |||||||| |||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaa 370
Query: 738 cgtgcacggggtggtgccgcaggggttcggcgccaccaccagggccatcaac 789
|||| | ||| |||||| |||||||||||| ||||||||||| ||||||
Sbjct: 369 cgtgaagcaggtcctgccgcgggggttcggcgcgaccaccagggcaatcaac 318
>gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31c19 3', mRNA sequence
Length = 537
Score = 151 bits (76), Expect = 6e-035
Identities = 193/232 (83%)
Strand = Plus / Minus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 405 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 346
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
|||||||||||||||| | ||||||| | | |||| |||||||||||| |||| |
Sbjct: 345 gaactacaactacggggcggcggggaagagcgtcgggttcgacgggctcaacaacccgga 286
Query: 678 cagggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacag 737
| |||||||| |||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaaggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaa 226
Query: 738 cgtgcacggggtggtgccgcaggggttcggcgccaccaccagggccatcaac 789
|||| | ||| |||||| |||||||||||| ||||||||||| ||||||
Sbjct: 225 cgtgaagcaggtcctgccgcgggggttcggcgcgaccaccagggcaatcaac 174
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| ||||||||||||||||||| ||| || |||||
Sbjct: 518 ggcaagagggagatagccgccttcttcgcgcacgtcacacatgagac 472
>gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_K13 5', mRNA sequence
Length = 403
Score = 147 bits (74), Expect = 1e-033
Identities = 191/230 (83%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||||
Sbjct: 21 agtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatgga 80
Query: 620 actacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccggca 679
|||||||||||||| | ||||||| | | |||| |||||||||||| |||| | |
Sbjct: 81 actacaactacggggcggcggggaagagcgtcgggttcgacgggctcaacaacccggaga 140
Query: 680 gggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacagcg 739
|||||||| |||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 141 aggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaacg 200
Query: 740 tgcacggggtggtgccgcaggggttcggcgccaccaccagggccatcaac 789
|| | ||| |||||| |||||||||||| ||||||||||| ||||||
Sbjct: 201 tgaagcaggtcctgccgcgggggttcggcgcgaccaccagggcaatcaac 250
>gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31e07 3', mRNA sequence
Length = 536
Score = 145 bits (73), Expect = 4e-033
Identities = 192/232 (82%)
Strand = Plus / Minus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || |||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 489 gcagtggccgtgcacctcgggnaaggggtactacgggcgcgggccgctgcagctgacatg 430
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
|||||||||||||||| | ||||||| | | |||| |||||||||||| |||| |
Sbjct: 429 gaactacaactacggggcggcggggaagagcgtcgggttcgacgggctcaacaacccgga 370
Query: 678 cagggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacag 737
| |||||||| |||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaaggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaa 310
Query: 738 cgtgcacggggtggtgccgcaggggttcggcgccaccaccagggccatcaac 789
|||| | ||| |||||| |||||||||||| ||||||||||| ||||||
Sbjct: 309 cgtgaagcaggtcctgccgcgggggttcggcgcgaccaccagggcaatcaac 258
>gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX10F18
5-PRIME, mRNA sequence
Length = 613
Score = 137 bits (69), Expect = 9e-031
Identities = 193/233 (82%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 354 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 413
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
|||||||||||||||| | ||||||| | | |||| |||||||||||| |||| |
Sbjct: 414 gaactacaactacggggcggcggggaagagcgtcgggttcgacgggctcaacaacccgga 473
Query: 678 cagggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacag 737
| |||||||| |||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaaggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaa 533
Query: 738 cgtgcacggggtggtgccgcagg-ggttcggcgccaccaccagggccatcaac 789
|||| | ||| |||||| || |||||||||| ||||||||||| ||||||
Sbjct: 534 cgtgaagcaggtcctgccgcgggnggttcggcgcgaccaccagggcaatcaac 586
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 98 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 157
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 158 gcaagagcttttacac 173
>gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K07
3-PRIME, mRNA sequence
Length = 576
Score = 125 bits (63), Expect = 4e-027
Identities = 165/199 (82%)
Strand = Plus / Minus
Query: 591 cgggcgcggcccgctgcagatctcgtggaactacaactacgggcccgcggggagggccat 650
||||||||| ||||||||| | | |||||||||||||||||| | ||||||| | | |
Sbjct: 576 cgggcgcgggccgctgcagctgacatggaactacaactacggggcggcggggaagagcgt 517
Query: 651 cggcttcgacgggctcggggaccccggcagggtggcgcgggacgccgtggtggcgttcaa 710
||| |||||||||||| |||| | | |||||||| |||| | | ||||||||||||
Sbjct: 516 cgggttcgacgggctcaacaacccggagaaggtggcgcaggacccagaggtggcgttcaa 457
Query: 711 ggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggttcggcgc 770
|||||||||||||||||||||||||| |||| | ||| |||||| ||||||||||||
Sbjct: 456 ggcggcgctctggttctggatgaacaacgtgaagcaggtcctgccgcgggggttcggcgc 397
Query: 771 caccaccagggccatcaac 789
||||||||||| ||||||
Sbjct: 396 gaccaccagggcaatcaac 378
>gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P16f, mRNA sequence
Length = 725
Score = 105 bits (53), Expect = 3e-021
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 360 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 419
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
||||||||||||||| | ||||||| | | |||| |||||||||||| |||||
Sbjct: 420 gaactacaactacggngcggcggggaagagcgtcgggttcgacgggctcaacacccccga 479
Query: 678 cagggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacag 737
| ||||||| ||| | | |||||||||||| |||||||||||||||||||||||||
Sbjct: 480 gaatgtggcgcatgacccagaggtggcgttcaaagcggcgctctggttctggatgaacaa 539
Query: 738 cgtgcacggggtggtgccgcaggggttcggcgccaccaccagggccatcaac 789
||| | || |||||| |||||||||||| ||||||||||| ||||||
Sbjct: 540 tgtgaagcatgtcctgccgcgggggttcggcgcgaccaccagggcaatcaac 591
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 104 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 163
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 164 gcaagagcttttacac 179
>gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_C05 5', mRNA sequence
Length = 426
Score = 101 bits (51), Expect = 5e-020
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 699 ggtggcgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgca 758
|||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 16 ggtggcgttcaaggcggcgctctggttctggatgaacaacgtgaagcaggtcctgccgcg 75
Query: 759 ggggttcggcgccaccaccagggccatcaac 789
|||||||||||| ||||||||||| ||||||
Sbjct: 76 ggggttcggcgcgaccaccagggcaatcaac 106
>gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_F06 5', mRNA sequence
Length = 420
Score = 101 bits (51), Expect = 5e-020
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 699 ggtggcgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgca 758
|||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 16 ggtggcgttcaaggcggcgctctggttctggatgaacaacgtgaagcaggtcctgccgcg 75
Query: 759 ggggttcggcgccaccaccagggccatcaac 789
|||||||||||| ||||||||||| ||||||
Sbjct: 76 ggggttcggcgcgaccaccagggcaatcaac 106
>gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_G13 5', mRNA sequence
Length = 420
Score = 101 bits (51), Expect = 5e-020
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 699 ggtggcgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgca 758
|||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 16 ggtggcgttcaaggcggcgctctggttctggatgaacaacgtgaagcaggtcctgccgcg 75
Query: 759 ggggttcggcgccaccaccagggccatcaac 789
|||||||||||| ||||||||||| ||||||
Sbjct: 76 ggggttcggcgcgaccaccagggcaatcaac 106
>gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023K15f, mRNA sequence
Length = 551
Score = 99.6 bits (50), Expect = 2e-019
Identities = 172/210 (81%), Gaps = 2/210 (0%)
Strand = Plus / Minus
Query: 537 ctactgcgacccgagcaagaggcagtggccgtgcgccgcggggcagaagtactacgggcg 596
|||||||||||||| || | | |||||||||||| ||| ||| || |||||||| ||
Sbjct: 472 ctactgcgacccgacgaacacggagtggccgtgcgtcgccgggaagggctactacggccg 413
Query: 597 cggcccgctgcagatctcgtggaactacaactacgggcccgc-ggggagggccatcggct 655
||| |||||||| |||||||||||||||||||||| | || ||| || ||| | ||||
Sbjct: 412 cggtccgctgcaattctcgtggaactacaactacggagctgcagggcagagcc-tgggct 354
Query: 656 tcgacgggctcggggaccccggcagggtggcgcgggacgccgtggtggcgttcaaggcgg 715
||||||||||| ||||| | | |||||||||| | |||| |||||||| | ||||
Sbjct: 353 tcgacgggctcaacgacccggacgcggtggcgcggagccccgtcttggcgttccaagcgg 294
Query: 716 cgctctggttctggatgaacagcgtgcacg 745
||||||||| ||||||||||||||||||||
Sbjct: 293 cgctctggtactggatgaacagcgtgcacg 264
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 757 caggggttcggcgccaccaccagggccatcaacggcgccctcgagtgcggcgggaacaac 816
||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| || |||
Sbjct: 246 cagggattcggcgccaccatcagggccatcaacggcgcgctcgagtgcaacggcaagaac 187
Query: 817 cccgcccagatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcggcgtc 876
||| || | |||| ||||||| |||||||| ||||| ||||| ||| ||||||||
Sbjct: 186 cccaccgccgtcaacgatcgcgtcgcctactacaagcagttctgccagcagttcggcgtc 127
Query: 877 gaccccgggcccaacctcacctgcta 902
||||| ||| ||| ||||||||||||
Sbjct: 126 gacccggggaccagcctcacctgcta 101
>gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018G12f, mRNA sequence
Length = 523
Score = 95.6 bits (48), Expect = 3e-018
Identities = 148/180 (82%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 124 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 183
Query: 618 gaactacaactacgggcccgcggggagggccatcggcttcgacgggctcggggaccccgg 677
||||||||||||||| | ||||||| | | |||| | |||||||||| | |||||
Sbjct: 184 gaactacaactacggcgcggcggggaagagcgtcgggtacgacgggctcaacaaacccgg 243
Query: 678 c-agggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaaca 736
| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agaaggtggcgcacgaccccaaggtggcgttcaaggcggcgctctggttctggatgaaca 303
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 457 gagatcgccgccttcttcgcgcacgccacgcacgagac 494
||||| ||||||||||||||||||| ||| || |||||
Sbjct: 20 gagatagccgccttcttcgcgcacgtcacacatgagac 57
>gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F1, mRNA sequence
Length = 240
Score = 93.7 bits (47), Expect = 1e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 699 ggtggcgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgca 758
|||||||||||||||||| ||||||||||||||||||| |||| | ||| ||||||
Sbjct: 8 ggtggcgttcaaggcggcactctggttctggatgaacaacgtgaagcaggtcctgccgcg 67
Query: 759 ggggttcggcgccaccaccagggccatcaac 789
|||||||||||| ||||||||||| ||||||
Sbjct: 68 ggggttcggcgcgaccaccagggcaatcaac 98
>gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F2, mRNA sequence
Length = 240
Score = 93.7 bits (47), Expect = 1e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 699 ggtggcgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgca 758
|||||||||||||||||| ||||||||||||||||||| |||| | ||| ||||||
Sbjct: 8 ggtggcgttcaaggcggcactctggttctggatgaacaacgtgaagcaggtcctgccgcg 67
Query: 759 ggggttcggcgccaccaccagggccatcaac 789
|||||||||||| ||||||||||| ||||||
Sbjct: 68 ggggttcggcgcgaccaccagggcaatcaac 98
>gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012G06f, mRNA sequence
Length = 767
Score = 89.7 bits (45), Expect = 2e-016
Identities = 162/201 (80%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggt 763
||||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 352 cgttccaggcggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggt 293
Query: 764 tcggcgccaccaccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgccc 823
||||||| || |||||||| |||||||| | | ||||||| ||| || || || | |
Sbjct: 292 tcggcgcgacgaccagggcaatcaacggttacgtggagtgcgacggcaagaagccagact 233
Query: 824 agatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccg 883
| |||||||||| | |||||||||| | | |||||| ||| ||||||||||||| |
Sbjct: 232 tggtgaacgcgcgggcgggctactacatggactactgcaagcagttcggcgtcgacccgg 173
Query: 884 ggcccaacctcacctgctagg 904
|| ||||||||| |||||||
Sbjct: 172 ggaacaacctcacttgctagg 152
Score = 58.0 bits (29), Expect = 7e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 585 gtactacgggcgcggcccgctgcagatctcgtggaactacaactacggg 633
|||||||||||| || ||||||||| | ||||||||||||||||||||
Sbjct: 471 gtactacgggcgagggccgctgcagctgacgtggaactacaactacggg 423
>gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 5', mRNA sequence
Length = 532
Score = 89.7 bits (45), Expect = 2e-016
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggt 763
||||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 181 cgttccaggcggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggt 240
Query: 764 tcggcgccaccaccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgccc 823
||||||| || |||||||| |||||||| | | ||||||| ||| || || || | |
Sbjct: 241 tcggcgcgacgaccagggcaatcaacggttacgtggagtgcgacggcaagaagccagact 300
Query: 824 agatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccg 883
| |||||||||| | |||||||||| | | |||||| ||| ||||||||||||| |
Sbjct: 301 tggtgaacgcgcgggcgggctactacatggactactgcaagcagttcggcgtcgacccgg 360
Query: 884 ggcccaacctcacctgctagg 904
|| ||||||||| |||||||
Sbjct: 361 ggaacaacctcacttgctagg 381
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || ||||||||| | ||||||
Sbjct: 37 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcagctgacgtgga 96
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 97 actacaactacggg 110
>gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 3', mRNA sequence
Length = 505
Score = 89.7 bits (45), Expect = 2e-016
Identities = 162/201 (80%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggt 763
||||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 324 cgttccaggcggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggt 265
Query: 764 tcggcgccaccaccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgccc 823
||||||| || |||||||| |||||||| | | ||||||| ||| || || || | |
Sbjct: 264 tcggcgcgacgaccagggcaatcaacggttacgtggagtgcgacggcaagaagccagact 205
Query: 824 agatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccg 883
| |||||||||| | |||||||||| | | |||||| ||| ||||||||||||| |
Sbjct: 204 tggtgaacgcgcgggcgggctactacatggactactgcaagcagttcggcgtcgacccgg 145
Query: 884 ggcccaacctcacctgctagg 904
|| ||||||||| |||||||
Sbjct: 144 ggaacaacctcacttgctagg 124
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || ||||||||| | ||||||
Sbjct: 468 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcagctgacgtgga 409
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 408 actacaactacggg 395
>gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009D03f, mRNA sequence
Length = 557
Score = 87.7 bits (44), Expect = 8e-016
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggt 763
||||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 467 cgttccaggcggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggt 526
Query: 764 tcggcgccaccaccagggccatcaacgg 791
||||||| || |||||||| ||||||||
Sbjct: 527 tcggcgcgacgaccagggcaatcaacgg 554
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || ||||||||| | ||||||
Sbjct: 323 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcagctgacgtgga 382
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 383 actacaactacggg 396
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 196 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 242
>gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ003_J08 5', mRNA sequence
Length = 111
Score = 83.8 bits (42), Expect = 1e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 681 ggtggcgcgggacgccgtggtggcgttcaaggcggcgctctggttctggatgaacagcgt 740
|||||||| |||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 19 ggtggcgcaggacccagaggtggcgttcaaggcggcgctctggttctggatgaacaacgt 78
Query: 741 gcacggggtggtgccgcaggggttcggcgc 770
| | ||| |||||| ||||||||||||
Sbjct: 79 gaagcaggtcctgccgcgggggttcggcgc 108
>gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007D10f, mRNA sequence
Length = 617
Score = 81.8 bits (41), Expect = 5e-014
Identities = 161/201 (80%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggt 763
||||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 372 cgttccaggcggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggt 431
Query: 764 tcggcgccaccaccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgccc 823
||||||| || ||||| || |||||||| | | ||||||| ||| || || || | |
Sbjct: 432 tcggcgcgacgaccagtgcaatcaacggttacgtggagtgcgacggcaagaagccagact 491
Query: 824 agatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccg 883
| |||||||||| | |||||||||| | | |||||| ||| ||||||||||||| |
Sbjct: 492 tggtgaacgcgcgggcgggctactacatggactactgcaagcagttcggcgtcgacccgg 551
Query: 884 ggcccaacctcacctgctagg 904
|| ||||||||| |||||||
Sbjct: 552 ggaacaacctcacttgctagg 572
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || ||||||||| | ||||||
Sbjct: 228 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcagctgacgtgga 287
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 288 actacaactacggg 301
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 101 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 147
>gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 5', mRNA sequence
Length = 360
Score = 77.8 bits (39), Expect = 7e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 714 ggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggttcggcgccac 773
|||| ||||||||||||||| || ||||||| ||| ||||||||||||||||||| ||
Sbjct: 2 ggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggttcggcgcgac 61
Query: 774 caccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgcccagatgaacgc 833
|||||||| |||||||| | | ||||||| ||| || || || | | | |||||||
Sbjct: 62 gaccagggcaatcaacggttacgtggagtgcgacggcaagaagccagacttggtgaacgc 121
Query: 834 gcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccgggcccaacct 893
||| | |||||||||| | | |||||| ||| ||||||||||||| ||| ||||||
Sbjct: 122 gcgggcgggctactacatggactactgcaagcagttcggcgtcgacccggggaacaacct 181
Query: 894 cacctgctagg 904
||| |||||||
Sbjct: 182 cacttgctagg 192
>gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 3', mRNA sequence
Length = 340
Score = 77.8 bits (39), Expect = 7e-013
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 714 ggcgctctggttctggatgaacagcgtgcacggggtggtgccgcaggggttcggcgccac 773
|||| ||||||||||||||| || ||||||| ||| ||||||||||||||||||| ||
Sbjct: 339 ggcgttctggttctggatgaccaacgtgcaccaggtcctgccgcaggggttcggcgcgac 280
Query: 774 caccagggccatcaacggcgccctcgagtgcggcgggaacaaccccgcccagatgaacgc 833
|||||||| |||||||| | | ||||||| ||| || || || | | | |||||||
Sbjct: 279 gaccagggcaatcaacggttacgtggagtgcgacggcaagaagccagacttggtgaacgc 220
Query: 834 gcgcgtcggctactacaggcagtactgccgccagctcggcgtcgaccccgggcccaacct 893
||| | |||||||||| | | |||||| ||| ||||||||||||| ||| ||||||
Sbjct: 219 gcgggcgggctactacatggactactgcaagcagttcggcgtcgacccggggaacaacct 160
Query: 894 cacctgctagg 904
||| |||||||
Sbjct: 159 cacttgctagg 149
>gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_K12 5', mRNA sequence
Length = 592
Score = 75.8 bits (38), Expect = 3e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||||||||| | | ||
Sbjct: 500 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatg 559
Query: 618 gaactacaactacgggcccgcgggga 643
|||||||||||||||| | |||||||
Sbjct: 560 gaactacaactacggggcggcgggga 585
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 99 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 158
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 159 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 203
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 244 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 303
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 304 gcaagagcttttacac 319
>gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010F03f, mRNA sequence
Length = 953
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || ||||||||| | ||||||
Sbjct: 516 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcagctgacgtgga 575
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 576 actacaactacggg 589
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcgg 208
||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||
Sbjct: 104 gcgcagaactgcggctgccagccgaacgagtgctgcagcaagtacggttattgcgg 159
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 389 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 435
>gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002L21f, mRNA sequence
Length = 839
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||||| |||| ||||||||| ||||||||| || | ||||||||
Sbjct: 383 gcagtggccgtgcgcgccgggcaagaagtacttcgggcgcgggcccatccagatctccca 442
Query: 618 gaactacaactacgggcccgcggggagggccatcggc 654
||||||||||||||||| || ||| |||||||||||
Sbjct: 443 caactacaactacgggccggcagggcgggccatcggc 479
>gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012P08f, mRNA sequence
Length = 710
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||||| |||| ||||||||| ||||||||| || | ||||||||
Sbjct: 593 gcagtggccgtgcgcgccgggcaagaagtacttcgggcgcgggcccatccagatctccca 652
Query: 618 gaactacaactacgggcccgcggggagggccatcggc 654
||||||||||||||||| || ||| |||||||||||
Sbjct: 653 caactacaactacgggccggcagggcgggccatcggc 689
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 181 tctgctgcagcaagttcggctactgcggcacgaccgacgagtactgcggc 230
|||||||||||| |||||||| ||||||| | ||| ||| |||||||||
Sbjct: 165 tctgctgcagcaggttcggcttctgcggctccacctccgactactgcggc 214
>gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009I06f, mRNA sequence
Length = 569
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcgg 208
||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||
Sbjct: 80 gcgcagaactgcggctgccagccgaacgagtgctgcagcaagtacggttattgcgg 135
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 560 agtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtgga 619
||||||||||| || ||||| || |||||||||||| || |||||||| | ||||||
Sbjct: 492 agtggccgtgcacctcggggaaggggtactacgggcgagggccgctgcaactgacgtgga 551
Query: 620 actacaactacggg 633
||||||||||||||
Sbjct: 552 actacaactacggg 565
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 365 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 411
>gb|BE216858.2|BE216858 HV_CEb0011N12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011N12f, mRNA sequence
Length = 953
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcgg 208
||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||
Sbjct: 104 gcgcagaactgcggctgccagccgaacgagtgctgcagcaagtacggttattgcgg 159
>gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M17f, mRNA sequence
Length = 532
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 450 caagcgcgagatcgccgccttcttcgcgcacgccacgcacgagaccgggcatttctgcta 509
||||||||||||||||||||||||||| |||| || ||||||||| | ||||||||
Sbjct: 417 caagcgcgagatcgccgccttcttcgcccacgtcaaccacgagaccataaagttctgcta 476
Query: 510 catcagcgagatcaac 525
|||| ||||||||||
Sbjct: 477 catcgacgagatcaac 492
>gb|BQ765750.1|BQ765750 EBro03_SQ008_F04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_F04 5', mRNA sequence
Length = 549
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcgg 208
||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||
Sbjct: 117 gcgcagaactgcggctgccagccgaacgagtgctgcagcaagtacggttattgcgg 172
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 402 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 448
>gb|BF627814.2|BF627814 HVSMEb0005N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005N23f, mRNA sequence
Length = 751
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagt 195
||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 116 gcgcagaactgcggctgccagccgaacgagtgctgcagcaagt 158
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 402 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 448
>gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016O17f, mRNA sequence
Length = 843
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
||||||||||||| || ||||| || ||||||||||||||| ||| ||||| | | ||
Sbjct: 508 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgttgcagctgacatg 567
Query: 618 gaactacaactacgggcccgcgggga 643
||||||||||||| || | |||||||
Sbjct: 568 gaactacaactacagggcggcgggga 593
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 107 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 166
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 167 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 211
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 700 gtggcgttcaaggcggcgctctggttctggatgaaca 736
|||| ||||||||||| |||||||||| |||||||||
Sbjct: 649 gtggtgttcaaggcggggctctggttcgggatgaaca 685
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 252 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 311
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 312 gcaagagcttttacac 327
>gb|BE213990.1|BE213990 HV_CEb0001N13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001N13f, mRNA sequence
Length = 972
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaag 194
||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 137 gcgcagaactgcggctgccagccgaacgagtgctgcagcaag 178
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 422 ggcaagagggagatagccgccttcttcgcccacgtcacgcaggagac 468
>gb|BF623642.2|BF623642 HVSMEa0003E14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003E14f, mRNA sequence
Length = 488
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 114 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 173
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 174 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 218
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 259 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 318
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 319 gcaagagcttttacac 334
>gb|BG300488.1|BG300488 HVSMEb0017D20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017D20f, mRNA sequence
Length = 876
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 107 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 166
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 167 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 211
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 252 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 311
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 312 gcaagagcttttacac 327
>gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 5', mRNA sequence
Length = 558
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 92 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 151
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 152 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 196
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcag 609
||||||||||||| || ||||| || ||||||||||||||| |||||||||
Sbjct: 493 gcagtggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcag 544
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 237 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 296
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 297 gcaagagcttttacac 312
>gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 5', mRNA sequence
Length = 340
Score = 58.0 bits (29), Expect = 7e-007
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 752 tgccgcaggggttcggcgccaccaccagggccatcaacggcgccctcgagtgcggcggga 811
||||||||||||||||||| || |||||||| |||||||| | | ||||||| ||| |
Sbjct: 6 tgccgcaggggttcggcgcgacgaccagggcaatcaacggttacgtggagtgcgacggca 65
Query: 812 acaaccccgcccagatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcg 871
| || || | | | |||||||||| | |||||||||| | | |||||| ||| |||
Sbjct: 66 agaagccagacttggtgaacgcgcgggcgggctactacatggactactgcaagcagttcg 125
Query: 872 gcgtcgaccccgggcccaacctcacctgctagg 904
|||||||||| ||| ||||||||| |||||||
Sbjct: 126 gcgtcgacccggggaacaacctcacttgctagg 158
>gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 3', mRNA sequence
Length = 325
Score = 58.0 bits (29), Expect = 7e-007
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 752 tgccgcaggggttcggcgccaccaccagggccatcaacggcgccctcgagtgcggcggga 811
||||||||||||||||||| || |||||||| |||||||| | | ||||||| ||| |
Sbjct: 320 tgccgcaggggttcggcgcgacgaccagggcaatcaacggttacgtggagtgcgacggca 261
Query: 812 acaaccccgcccagatgaacgcgcgcgtcggctactacaggcagtactgccgccagctcg 871
| || || | | | |||||||||| | |||||||||| | | |||||| ||| |||
Sbjct: 260 agaagccagacttggtgaacgcgcgggcgggctactacatggactactgcaagcagttcg 201
Query: 872 gcgtcgaccccgggcccaacctcacctgctagg 904
|||||||||| ||| ||||||||| |||||||
Sbjct: 200 gcgtcgacccggggaacaacctcacttgctagg 168
>gb|BM097408.2|BM097408 EBem07_SQ001_P19_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_P19 5', mRNA sequence
Length = 366
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 98 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 157
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 158 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 202
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 243 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 302
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 303 gcaagagcttttacac 318
>gb|BM369656.2|BM369656 EBem07_SQ004_D22_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D22 5', mRNA sequence
Length = 322
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 120 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 179
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 180 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 224
Score = 42.1 bits (21), Expect = 0.041
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcg 361
|||||||||||| ||||||||||||| |||||| || |||||| | ||||||||
Sbjct: 265 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcg 321
>gb|BM369786.2|BM369786 EBem07_SQ004_J18_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_J18 5', mRNA sequence
Length = 394
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 120 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 179
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 180 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 224
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 265 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 324
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 325 gcaagagcttttacac 340
>gb|BM368400.2|BM368400 EBem08_SQ002_B18_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_B18 5', mRNA sequence
Length = 454
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 150 gccgcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcggc 209
|||||||||||||||||||||| | | |||| ||||||||| || ||| || ||||||
Sbjct: 108 gccgcgcagaactgcggctgccgggcgaacgagtgctgcagccggtacggttattgcggc 167
Query: 210 acgaccgacgagtactgcggcgacgggtgccagtcgggcccgtgc 254
|| ||||||| ||||| || || || || ||||| |||||||||
Sbjct: 168 actaccgacgcctactgtggagatggatgtcagtctggcccgtgc 212
Score = 48.1 bits (24), Expect = 7e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 305 gcgtcgtcaccggctccttcttcaacggcatcaagaaccaggccgggagcgggtgcgagg 364
|||||||||||| ||||||||||||| |||||| || |||||| | |||||||| |
Sbjct: 253 gcgtcgtcaccgaggccttcttcaacgggatcaagtcccgggccggcaacgggtgcgccg 312
Query: 365 gcaagaacttctacac 380
|||||| ||| |||||
Sbjct: 313 gcaagagcttttacac 328
>gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020C16f, mRNA sequence
Length = 789
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 153 gcgcagaactgcggctgccagccaaacgtctgctgcagcaagttcggctactgcgg 208
||||| ||||||||||||||||| |||| ||||||||||||| ||| || |||||
Sbjct: 110 gcgcaaaactgcggctgccagccgaacgagtgctgcagcaagtacggttattgcgg 165
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 448 ggcaagcgcgagatcgccgccttcttcgcgcacgccacgcacgagac 494
|||||| | ||||| |||||||||||||| |||| |||||| |||||
Sbjct: 395 ggcaagagggagatagccgccttcttcgcccacgtcacgcaagagac 441
>gb|BQ757141.1|BQ757141 EBem10_SQ003_A07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ003_A07 5', mRNA sequence
Length = 232
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 752 tgccgcaggggttcggcgccaccaccagggccatcaac 789
|||||| |||||||||||| ||||||||||| ||||||
Sbjct: 18 tgccgcgggggttcggcgcgaccaccagggcaatcaac 55
>gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020E19f, mRNA sequence
Length = 537
Score = 48.1 bits (24), Expect = 7e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tctcgtggaactacaactacgggcccgcggggagggccatcggcttcgacgggctcgggg 670
|||| |||||||||||||||||||| |||||| ||| | ||||||||||||| |||
Sbjct: 442 tctcctggaactacaactacgggccggcgggggaggcgctgtgcttcgacgggctgggga 501
Query: 671 accc 674
||||
Sbjct: 502 accc 505
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 449 gcaagcgcgagatcgccgccttcttcgcgca 479
||||||||||| ||||||||||| |||||||
Sbjct: 241 gcaagcgcgaggtcgccgccttcctcgcgca 271
>gb|BG368852.1|BG368852 HVSMEi0020P03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020P03f, mRNA sequence
Length = 623
Score = 48.1 bits (24), Expect = 7e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
|||||||||||||||| | ||| ||| |||||||| || || ||| | ||| ||||
Sbjct: 298 gcagtggccgtgcgccccagggaagagctactacggccgtgggccgatccagctctccca 357
Query: 618 gaactacaactacgggcccgcggggagggccatcgg 653
||||||||||||||||| ||||| ||||||||||
Sbjct: 358 caactacaactacgggcctgcgggccgggccatcgg 393
>gb|BG368854.1|BG368854 HVSMEi0020P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020P07f, mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 7e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
|||||||||||||||| | ||| ||| |||||||| || || ||| | ||| ||||
Sbjct: 298 gcagtggccgtgcgccccagggaagagctactacggccgtgggccgatccagctctccca 357
Query: 618 gaactacaactacgggcccgcggggagggccatcgg 653
||||||||||||||||| ||||| ||||||||||
Sbjct: 358 caactacaactacgggcctgcgggccgggccatcgg 393
>gb|BI949464.1|BI949464 HVSMEl0014A17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0014A17f, mRNA sequence
Length = 872
Score = 48.1 bits (24), Expect = 7e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
|||||||||||||||| | ||| ||| |||||||| || || ||| | ||| ||||
Sbjct: 397 gcagtggccgtgcgccccagggaagagctactacggccgtgggccgatccagctctccca 456
Query: 618 gaactacaactacgggcccgcggggagggccatcgg 653
||||||||||||||||| ||||| ||||||||||
Sbjct: 457 caactacaactacgggcctgcgggccgggccatcgg 492
>gb|BG365857.2|BG365857 HVSMEi0004I09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004I09f, mRNA sequence
Length = 933
Score = 48.1 bits (24), Expect = 7e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 558 gcagtggccgtgcgccgcggggcagaagtactacgggcgcggcccgctgcagatctcgtg 617
|||||||||||||||| | ||| ||| |||||||| || || ||| | ||| ||||
Sbjct: 565 gcagtggccgtgcgccccagggaagagctactacggccgtgggccgatccagctctccca 624
Query: 618 gaactacaactacgggcccgcggggagggccatcgg 653
||||||||||||||||| ||||| ||||||||||
Sbjct: 625 caactacaactacgggcctgcgggccgggccatcgg 660
>gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25c19 5', mRNA sequence
Length = 540
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 619 aactacaactacgggcccgcggggagggccatcggc 654
||||||||||||||||| || ||| |||||||||||
Sbjct: 5 aactacaactacgggccggcagggcgggccatcggc 40
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,322
Number of Sequences: 312970
Number of extensions: 154322
Number of successful extensions: 44585
Number of sequences better than 0.5: 156
Number of HSP's better than 0.5 without gapping: 154
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44117
Number of HSP's gapped (non-prelim): 441
length of query: 1186
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1167
effective length of database: 169,188,109
effective search space: 197442523203
effective search space used: 197442523203
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)